Your job contains 1 sequence.
>psy14580
MSDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHI
DCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIP
SSSEKKSKTPKKKAVAYFCLIRPLCFQNV
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14580
(149 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|K7ENR9 - symbol:LIG3 "DNA ligase 3" species:960... 216 9.5e-18 1
ZFIN|ZDB-GENE-030131-8453 - symbol:lig3 "ligase III, DNA,... 219 6.3e-17 1
UNIPROTKB|K7ERZ5 - symbol:LIG3 "DNA ligase 3" species:960... 216 7.2e-17 1
UNIPROTKB|I3LN18 - symbol:LIG3 "Uncharacterized protein" ... 215 7.7e-17 1
UNIPROTKB|F1P394 - symbol:LIG3 "DNA ligase" species:9031 ... 218 1.1e-16 1
UNIPROTKB|F1MQY1 - symbol:LIG3 "DNA ligase" species:9913 ... 218 1.1e-16 1
UNIPROTKB|P49916 - symbol:LIG3 "DNA ligase 3" species:960... 216 2.0e-16 1
RGD|1309875 - symbol:Lig3 "ligase III, DNA, ATP-dependent... 215 2.4e-16 1
UNIPROTKB|D4A2K2 - symbol:Lig3 "DNA ligase" species:10116... 215 2.4e-16 1
UNIPROTKB|D4A837 - symbol:Lig3 "DNA ligase" species:10116... 215 2.6e-16 1
MGI|MGI:109152 - symbol:Lig3 "ligase III, DNA, ATP-depend... 215 2.6e-16 1
UNIPROTKB|E2RNT6 - symbol:LIG3 "DNA ligase" species:9615 ... 214 3.0e-16 1
UNIPROTKB|J9P597 - symbol:LIG3 "DNA ligase" species:9615 ... 214 3.1e-16 1
DICTYBASE|DDB_G0291872 - symbol:DDB_G0291872 "PARP-type z... 172 8.7e-12 1
WB|WBGene00010626 - symbol:K07C5.3 species:6239 "Caenorha... 153 3.9e-10 1
UNIPROTKB|Q21275 - symbol:K07C5.3 "Protein K07C5.3" speci... 153 3.9e-10 1
UNIPROTKB|Q5VX84 - symbol:PARP1 "Poly [ADP-ribose] polyme... 138 1.8e-09 1
UNIPROTKB|Q5VX85 - symbol:PARP1 "Poly [ADP-ribose] polyme... 138 1.8e-09 1
ZFIN|ZDB-GENE-030131-3955 - symbol:parp1 "poly (ADP-ribos... 151 1.8e-09 1
UNIPROTKB|F1P5K6 - symbol:PARP1 "Poly [ADP-ribose] polyme... 146 6.1e-09 1
UNIPROTKB|P26446 - symbol:PARP1 "Poly [ADP-ribose] polyme... 141 2.1e-08 1
UNIPROTKB|F1NL05 - symbol:PARP1 "Poly [ADP-ribose] polyme... 141 2.1e-08 1
UNIPROTKB|F1MU08 - symbol:PARP1 "Poly [ADP-ribose] polyme... 140 2.7e-08 1
UNIPROTKB|P18493 - symbol:PARP1 "Poly [ADP-ribose] polyme... 139 3.4e-08 1
UNIPROTKB|P09874 - symbol:PARP1 "Poly [ADP-ribose] polyme... 138 4.3e-08 1
RGD|2053 - symbol:Parp1 "poly (ADP-ribose) polymerase 1" ... 136 7.1e-08 1
UNIPROTKB|I3LDH3 - symbol:PARP1 "Uncharacterized protein"... 136 7.1e-08 1
TAIR|locus:2042511 - symbol:PARP1 "POLY(ADP-RIBOSE) POLYM... 133 1.4e-07 1
FB|FBgn0010247 - symbol:Parp "Poly-(ADP-ribose) polymeras... 131 2.4e-07 1
MGI|MGI:1340806 - symbol:Parp1 "poly (ADP-ribose) polymer... 131 2.4e-07 1
TAIR|locus:2086355 - symbol:AT3G14890 species:3702 "Arabi... 123 1.1e-06 1
UNIPROTKB|J9NXE3 - symbol:PARP1 "Uncharacterized protein"... 120 3.4e-06 1
UNIPROTKB|F1Q2M3 - symbol:PARP1 "Uncharacterized protein"... 120 3.5e-06 1
WB|WBGene00004049 - symbol:pme-1 species:6239 "Caenorhabd... 102 0.00028 1
>UNIPROTKB|K7ENR9 [details] [associations]
symbol:LIG3 "DNA ligase 3" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001510 Pfam:PF00645
PROSITE:PS00347 PROSITE:PS50064 EMBL:AC004223 EMBL:AC022903
HGNC:HGNC:6600 Gene3D:3.30.1740.10 Ensembl:ENST00000592690
Uniprot:K7ENR9
Length = 207
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 42/108 (38%), Positives = 65/108 (60%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 3 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPER 117
R TT KIE + ++ GW++L ++E++ + S+K P++
Sbjct: 63 ARATTKKIEDLTELEGWEELEDNEKEQITQHIADL---SSKAAGTPKK 107
>ZFIN|ZDB-GENE-030131-8453 [details] [associations]
symbol:lig3 "ligase III, DNA, ATP-dependent"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003909 "DNA ligase activity" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 ZFIN:ZDB-GENE-030131-8453
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
TIGRFAMs:TIGR00574 CTD:3980 HOGENOM:HOG000007653 HOVERGEN:HBG005515
OrthoDB:EOG44BB1K Gene3D:3.30.1740.10 EMBL:BC098869 IPI:IPI00618829
RefSeq:NP_001025345.2 UniGene:Dr.107348 ProteinModelPortal:Q4KM23
SMR:Q4KM23 STRING:Q4KM23 GeneID:563276 InParanoid:Q4KM23
NextBio:20884821 Uniprot:Q4KM23
Length = 752
Score = 219 (82.2 bits), Expect = 6.3e-17, P = 6.3e-17
Identities = 41/100 (41%), Positives = 63/100 (63%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFKK 69
++ + V+ AK G +GCKKCK KI G VRI K+ NPF +G+MK+W+H+ CI E ++
Sbjct: 3 EQRYCVEYAKRGTAGCKKCKDKIMKGLVRIGKIVPNPFSESAGEMKEWYHVKCIFEKLER 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESN 109
R TT KIE + ++ GW++L ED++ + E + N
Sbjct: 63 ARATTKKIEDITELEGWEELQDEDKDLINKHVSELAAKVN 102
>UNIPROTKB|K7ERZ5 [details] [associations]
symbol:LIG3 "DNA ligase 3" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 PROSITE:PS00347
PROSITE:PS00697 PROSITE:PS50064 Gene3D:1.10.3260.10
SUPFAM:SSF117018 EMBL:AC004223 EMBL:AC022903 HGNC:HGNC:6600
Gene3D:3.30.1740.10 Ensembl:ENST00000585941 Uniprot:K7ERZ5
Length = 545
Score = 216 (81.1 bits), Expect = 7.2e-17, P = 7.2e-17
Identities = 42/108 (38%), Positives = 65/108 (60%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 99 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 158
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPER 117
R TT KIE + ++ GW++L ++E++ + S+K P++
Sbjct: 159 ARATTKKIEDLTELEGWEELEDNEKEQITQHIADL---SSKAAGTPKK 203
>UNIPROTKB|I3LN18 [details] [associations]
symbol:LIG3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001510
InterPro:IPR012308 Pfam:PF00645 Pfam:PF04675 PROSITE:PS00347
PROSITE:PS50064 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0006310 GO:GO:0003910 Gene3D:1.10.3260.10 SUPFAM:SSF117018
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:FP312781
Ensembl:ENSSSCT00000026782 OMA:WEELEDP Uniprot:I3LN18
Length = 502
Score = 215 (80.7 bits), Expect = 7.7e-17, P = 7.7e-17
Identities = 42/108 (38%), Positives = 65/108 (60%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPER 117
R TT KIE + ++ GW++L ++E++ + S+K P++
Sbjct: 150 ARATTKKIEDLTELEGWEELEDPEKEQISQHIADL---SSKAASTPKK 194
>UNIPROTKB|F1P394 [details] [associations]
symbol:LIG3 "DNA ligase" species:9031 "Gallus gallus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003910 "DNA ligase (ATP)
activity" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:WSETDLL Gene3D:3.30.1740.10
GeneTree:ENSGT00700000104500 EMBL:AADN02025943 IPI:IPI00586176
Ensembl:ENSGALT00000003599 Uniprot:F1P394
Length = 900
Score = 218 (81.8 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 40/92 (43%), Positives = 62/92 (67%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPF--GSGKMKQWHHIDCILEVFKK 69
++ + VD AK G +GCKKCK+KI G VRI K+ NPF G MK+W+H+ C+ E +K
Sbjct: 3 EQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESGGDMKEWYHVKCMFEKLEK 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRF 101
R +T KIE + D+ GW++L + ++E+++ F
Sbjct: 63 ARASTKKIEDITDLEGWEELQ-DGEKELITNF 93
>UNIPROTKB|F1MQY1 [details] [associations]
symbol:LIG3 "DNA ligase" species:9913 "Bos taurus"
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:WSETDLL Gene3D:3.30.1740.10
GeneTree:ENSGT00700000104500 EMBL:DAAA02048465 IPI:IPI00905942
UniGene:Bt.25483 Ensembl:ENSBTAT00000024875 Uniprot:F1MQY1
Length = 943
Score = 218 (81.8 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 45/108 (41%), Positives = 68/108 (62%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 89 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 148
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPER 117
R TT KIE + ++ GW++L E+++E +S+ L S+K P++
Sbjct: 149 ARATTKKIEDLTELEGWEELE-ENEKEQISQHIADL--SSKATSTPKK 193
>UNIPROTKB|P49916 [details] [associations]
symbol:LIG3 "DNA ligase 3" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0043504 "mitochondrial
DNA repair" evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=IDA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0007283 "spermatogenesis" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_216
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
InterPro:IPR001357 GO:GO:0005524 GO:GO:0005694 GO:GO:0005654
GO:GO:0051301 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0008270 GO:GO:0007283 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
EMBL:CH471147 GO:GO:0007131 GO:GO:0006289 DrugBank:DB00290
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10776
EMBL:X84740 EMBL:U40671 EMBL:AF491645 EMBL:AC004223 EMBL:AC022903
EMBL:BC068005 IPI:IPI00000156 IPI:IPI00029081 PIR:I37292
RefSeq:NP_002302.2 RefSeq:NP_039269.2 UniGene:Hs.100299 PDB:1IMO
PDB:1IN1 PDB:1UW0 PDB:3L2P PDB:3PC7 PDB:3PC8 PDB:3QVG PDBsum:1IMO
PDBsum:1IN1 PDBsum:1UW0 PDBsum:3L2P PDBsum:3PC7 PDBsum:3PC8
PDBsum:3QVG ProteinModelPortal:P49916 SMR:P49916 IntAct:P49916
MINT:MINT-4531178 STRING:P49916 PhosphoSite:P49916 DMDM:251757259
PaxDb:P49916 PRIDE:P49916 DNASU:3980 Ensembl:ENST00000262327
Ensembl:ENST00000378526 GeneID:3980 KEGG:hsa:3980 UCSC:uc002hik.2
CTD:3980 GeneCards:GC17P033307 HGNC:HGNC:6600 HPA:HPA006723
MIM:600940 neXtProt:NX_P49916 PharmGKB:PA30374 HOGENOM:HOG000007653
HOVERGEN:HBG005515 InParanoid:P49916 OMA:WSETDLL OrthoDB:EOG44BB1K
BRENDA:6.5.1.1 ChiTaRS:LIG3 EvolutionaryTrace:P49916
GenomeRNAi:3980 NextBio:15598 ArrayExpress:P49916 Bgee:P49916
CleanEx:HS_LIG3 Genevestigator:P49916 GermOnline:ENSG00000005156
Gene3D:3.30.1740.10 Uniprot:P49916
Length = 1009
Score = 216 (81.1 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 42/108 (38%), Positives = 65/108 (60%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 90 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 149
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPER 117
R TT KIE + ++ GW++L ++E++ + S+K P++
Sbjct: 150 ARATTKKIEDLTELEGWEELEDNEKEQITQHIADL---SSKAAGTPKK 194
>RGD|1309875 [details] [associations]
symbol:Lig3 "ligase III, DNA, ATP-dependent" species:10116
"Rattus norvegicus" [GO:0000794 "condensed nuclear chromosome"
evidence=ISO] [GO:0000795 "synaptonemal complex" evidence=IEA;ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266 "DNA
ligation" evidence=IBA] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA;ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA;ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA;ISO] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0033151 "V(D)J recombination" evidence=ISO]
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
RGD:1309875 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0008270 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 KO:K10776 CTD:3980 HOGENOM:HOG000007653
HOVERGEN:HBG005515 Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500
EMBL:BC085959 IPI:IPI00565239 RefSeq:NP_001012011.1
UniGene:Rn.230056 SMR:Q5U2M4 STRING:Q5U2M4
Ensembl:ENSRNOT00000055982 GeneID:303369 KEGG:rno:303369
NextBio:651212 Genevestigator:Q5U2M4 Uniprot:Q5U2M4
Length = 943
Score = 215 (80.7 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 39/88 (44%), Positives = 58/88 (65%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R TT KIE + ++ GW++L ++E++
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI 178
>UNIPROTKB|D4A2K2 [details] [associations]
symbol:Lig3 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 RGD:1309875 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG44BB1K Gene3D:3.30.1740.10
IPI:IPI00563728 PRIDE:D4A2K2 Ensembl:ENSRNOT00000047849
ArrayExpress:D4A2K2 Uniprot:D4A2K2
Length = 955
Score = 215 (80.7 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 39/88 (44%), Positives = 58/88 (65%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R TT KIE + ++ GW++L ++E++
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI 178
>UNIPROTKB|D4A837 [details] [associations]
symbol:Lig3 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 RGD:1309875
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0008270 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 Gene3D:3.30.1740.10 IPI:IPI00370404
Ensembl:ENSRNOT00000029555 ArrayExpress:D4A837 Uniprot:D4A837
Length = 1014
Score = 215 (80.7 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 39/88 (44%), Positives = 58/88 (65%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R TT KIE + ++ GW++L ++E++
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI 178
>MGI|MGI:109152 [details] [associations]
symbol:Lig3 "ligase III, DNA, ATP-dependent" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006266 "DNA ligation" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IMP] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0043504 "mitochondrial DNA repair"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
InterPro:IPR001357 EMBL:U66057 MGI:MGI:109152 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0007049
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303
GO:GO:0006289 GO:GO:0045910 GO:GO:0043504 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 HOGENOM:HOG000007653
HOVERGEN:HBG005515 OrthoDB:EOG44BB1K Gene3D:3.30.1740.10
EMBL:U66058 EMBL:AL645594 IPI:IPI00124272 IPI:IPI00230471
UniGene:Mm.277136 ProteinModelPortal:P97386 SMR:P97386
IntAct:P97386 STRING:P97386 PhosphoSite:P97386 PaxDb:P97386
PRIDE:P97386 InParanoid:P97386 Bgee:P97386 CleanEx:MM_LIG3
Genevestigator:P97386 GermOnline:ENSMUSG00000020697 GO:GO:0000795
Uniprot:P97386
Length = 1015
Score = 215 (80.7 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 39/88 (44%), Positives = 58/88 (65%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+HI C+ E ++
Sbjct: 91 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLER 150
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R TT KIE + ++ GW++L ++E++
Sbjct: 151 ARATTKKIEDLTELEGWEELEDNEKEQI 178
>UNIPROTKB|E2RNT6 [details] [associations]
symbol:LIG3 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:AAEX03006627
Ensembl:ENSCAFT00000029122 Uniprot:E2RNT6
Length = 938
Score = 214 (80.4 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+H+ C+ E ++
Sbjct: 3 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHVKCMFEKLER 62
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R TT KIE + ++ GW++L ++E++
Sbjct: 63 ARATTKKIEDLTELEGWEELEDNEKEQI 90
>UNIPROTKB|J9P597 [details] [associations]
symbol:LIG3 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:WSETDLL
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:AAEX03006627
Ensembl:ENSCAFT00000048097 Uniprot:J9P597
Length = 957
Score = 214 (80.4 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKK 69
++ F VD AK G +GCKKCK+KI G RI K+ NPF G MK+W+H+ C+ E ++
Sbjct: 57 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHVKCMFEKLER 116
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
R TT KIE + ++ GW++L ++E++
Sbjct: 117 ARATTKKIEDLTELEGWEELEDNEKEQI 144
>DICTYBASE|DDB_G0291872 [details] [associations]
symbol:DDB_G0291872 "PARP-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000253
InterPro:IPR001510 InterPro:IPR008984 Pfam:PF00645 PROSITE:PS50064
dictyBase:DDB_G0291872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.60.200.20 SUPFAM:SSF49879 EMBL:AAFI02000186
InterPro:IPR019406 Pfam:PF10283 Gene3D:3.30.1740.10
Gene3D:3.40.470.10 InterPro:IPR005122 SUPFAM:SSF52141
eggNOG:NOG250748 RefSeq:XP_629877.1 ProteinModelPortal:Q54E19
PRIDE:Q54E19 EnsemblProtists:DDB0232927 GeneID:8628375
KEGG:ddi:DDB_G0291872 InParanoid:Q54E19 OMA:CNLIQEN Uniprot:Q54E19
Length = 895
Score = 172 (65.6 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 38/96 (39%), Positives = 57/96 (59%)
Query: 12 DKNFWVDRAKTGRSGCK--KCKQKIDTGTVRI-AKMGYNPFGS-GKMKQWHHIDCILEVF 67
+ + ++ A TGRS CK KCK++I+ G VRI A F + G W H +C E
Sbjct: 3 NNTYRIEYASTGRSSCKQAKCKKQIEKGAVRIGAIFPSERFETDGVGTDWFHPNCFFEKQ 62
Query: 68 KKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPE 103
KK R+TT K++ +DD+ G+DDL+ DQ+ + S+ E
Sbjct: 63 KKARKTTKKVDDIDDLIGFDDLSKSDQKNIKSKVEE 98
>WB|WBGene00010626 [details] [associations]
symbol:K07C5.3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] InterPro:IPR001510
InterPro:IPR012308 Pfam:PF00645 Pfam:PF04675 PROSITE:PS50064
GO:GO:0005739 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0006310 InterPro:IPR019406
Pfam:PF10283 EMBL:Z71181 GO:GO:0006273 GO:GO:0003910
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 PIR:T23404
RefSeq:NP_505659.1 ProteinModelPortal:Q21275 SMR:Q21275
STRING:Q21275 PaxDb:Q21275 EnsemblMetazoa:K07C5.3.1
EnsemblMetazoa:K07C5.3.2 GeneID:179441 KEGG:cel:CELE_K07C5.3
UCSC:K07C5.3 CTD:179441 WormBase:K07C5.3 eggNOG:NOG250748
InParanoid:Q21275 OMA:CKMQLEK NextBio:905412 Uniprot:Q21275
Length = 493
Score = 153 (58.9 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 36/105 (34%), Positives = 57/105 (54%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGK--------MKQWHHIDCILEV 66
F D AK C+KCK +++ G +R+ K+ N F + K MKQ+ H +C+ E+
Sbjct: 9 FCTDYAKRVAK-CQKCKMQLEKGVLRMGKIMPNFFVAAKDPSKPPPDMKQYFHTNCLFEM 67
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKD 111
K R TT I+ D++ G++DL EDQ+E+ E + +KD
Sbjct: 68 LFKARPTTKVIDETDEIEGFEDLNAEDQDEIKKLVDELAEKRSKD 112
>UNIPROTKB|Q21275 [details] [associations]
symbol:K07C5.3 "Protein K07C5.3" species:6239
"Caenorhabditis elegans" [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IBA] InterPro:IPR001510
InterPro:IPR012308 Pfam:PF00645 Pfam:PF04675 PROSITE:PS50064
GO:GO:0005739 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0006310 InterPro:IPR019406
Pfam:PF10283 EMBL:Z71181 GO:GO:0006273 GO:GO:0003910
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 PIR:T23404
RefSeq:NP_505659.1 ProteinModelPortal:Q21275 SMR:Q21275
STRING:Q21275 PaxDb:Q21275 EnsemblMetazoa:K07C5.3.1
EnsemblMetazoa:K07C5.3.2 GeneID:179441 KEGG:cel:CELE_K07C5.3
UCSC:K07C5.3 CTD:179441 WormBase:K07C5.3 eggNOG:NOG250748
InParanoid:Q21275 OMA:CKMQLEK NextBio:905412 Uniprot:Q21275
Length = 493
Score = 153 (58.9 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 36/105 (34%), Positives = 57/105 (54%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGK--------MKQWHHIDCILEV 66
F D AK C+KCK +++ G +R+ K+ N F + K MKQ+ H +C+ E+
Sbjct: 9 FCTDYAKRVAK-CQKCKMQLEKGVLRMGKIMPNFFVAAKDPSKPPPDMKQYFHTNCLFEM 67
Query: 67 FKKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKD 111
K R TT I+ D++ G++DL EDQ+E+ E + +KD
Sbjct: 68 LFKARPTTKVIDETDEIEGFEDLNAEDQDEIKKLVDELAEKRSKD 112
>UNIPROTKB|Q5VX84 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001510 Pfam:PF00645
PROSITE:PS00347 PROSITE:PS50064 GO:GO:0003677 GO:GO:0008270
EMBL:AL359704 Gene3D:3.30.1740.10 EMBL:AL359742 UniGene:Hs.177766
HGNC:HGNC:270 ChiTaRS:PARP1 IPI:IPI00477173 SMR:Q5VX84
STRING:Q5VX84 Ensembl:ENST00000366791 Ensembl:ENST00000366792
Uniprot:Q5VX84
Length = 108
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDD 88
+++ ++ WDD
Sbjct: 66 HPDVEVDGFSELR-WDD 81
>UNIPROTKB|Q5VX85 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001510 Pfam:PF00645
PROSITE:PS00347 PROSITE:PS50064 GO:GO:0003677 GO:GO:0008270
EMBL:AL359704 Gene3D:3.30.1740.10 EMBL:AL359742 UniGene:Hs.177766
HGNC:HGNC:270 ChiTaRS:PARP1 IPI:IPI00478427 SMR:Q5VX85
STRING:Q5VX85 Ensembl:ENST00000366790 HOGENOM:HOG000208895
Uniprot:Q5VX85
Length = 155
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDD 88
+++ ++ WDD
Sbjct: 66 HPDVEVDGFSELR-WDD 81
>ZFIN|ZDB-GENE-030131-3955 [details] [associations]
symbol:parp1 "poly (ADP-ribose) polymerase family,
member 1" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003950 "NAD+ ADP-ribosyltransferase activity"
evidence=IEA] [GO:0006471 "protein ADP-ribosylation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA]
InterPro:IPR001510 InterPro:IPR004102 InterPro:IPR008288
InterPro:IPR012317 InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645
Pfam:PF02877 Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347
PROSITE:PS50064 PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357
Pfam:PF00533 ZFIN:ZDB-GENE-030131-3955 GO:GO:0005634 GO:GO:0051287
GO:GO:0003677 GO:GO:0008270 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0006471 GO:GO:0003950 Gene3D:3.30.1740.10
EMBL:BX470188 HOGENOM:HOG000030402 KO:K10798 OMA:SRYWIFR
Gene3D:1.20.142.10 InterPro:IPR008893 Pfam:PF05406 SMART:SM00773
SUPFAM:SSF47587 SUPFAM:SSF142921 CTD:142 HOVERGEN:HBG053513
GeneTree:ENSGT00390000017341 IPI:IPI00486287 RefSeq:NP_001038407.1
UniGene:Dr.36319 SMR:Q5RHR0 Ensembl:ENSDART00000017269
GeneID:560788 KEGG:dre:560788 InParanoid:Q5RHR0 NextBio:20883616
Uniprot:Q5RHR0
Length = 1013
Score = 151 (58.2 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 32/88 (36%), Positives = 48/88 (54%)
Query: 10 EDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKK 69
+DDK + + AK+GR+ CKKCK I ++R+A M +P GK+ WHH C
Sbjct: 5 QDDKLYKAEYAKSGRASCKKCKDNIAKDSLRMAIMVQSPMFDGKVPHWHHFSCFW----- 59
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
A ++ D+ G+ DL +DQE+V
Sbjct: 60 ---LRAAVQSPSDISGFTDLRWDDQEKV 84
Score = 121 (47.7 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 31/103 (30%), Positives = 51/103 (49%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F V+ AK+ RS CK C QKI+ +R++K +P G + +W+H C + ++
Sbjct: 112 DFAVEYAKSNRSTCKGCDQKIEKDQIRVSKKTVDPEKPQLGLIDRWYHTGCFVS---RRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ K E + G+ L ED+EE+ R P E + D
Sbjct: 169 ELIFKPEYSAAQLKGFAVLRDEDKEELKKRLPAVKSEGKRKAD 211
>UNIPROTKB|F1P5K6 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003950
"NAD+ ADP-ribosyltransferase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006471 "protein ADP-ribosylation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0051287 "NAD binding" evidence=IEA] InterPro:IPR001510
InterPro:IPR004102 InterPro:IPR008288 InterPro:IPR012317
InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645 Pfam:PF02877
Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064
PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005634 GO:GO:0051287 GO:GO:0003677 GO:GO:0008270
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006471
GO:GO:0003950 Gene3D:3.30.1740.10 Gene3D:1.20.142.10
InterPro:IPR008893 Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587
SUPFAM:SSF142921 GeneTree:ENSGT00390000017341 EMBL:AADN02012180
EMBL:AADN02012181 EMBL:AADN02012182 IPI:IPI00588387
Ensembl:ENSGALT00000015016 ArrayExpress:F1P5K6 Uniprot:F1P5K6
Length = 1009
Score = 146 (56.5 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 34/96 (35%), Positives = 52/96 (54%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + + AK+GR+ CKKC + I ++R+A M +P GK+ WHH C F K+
Sbjct: 6 DKPYRAEYAKSGRASCKKCGESIAKDSLRLALMVQSPMFDGKVPHWHHYSC----FWKR- 60
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRE 107
A+I D+ G+ +L EDQE++ L+E
Sbjct: 61 ---ARIVSHTDIDGFPELRWEDQEKIKKAIETGLQE 93
Score = 115 (45.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/99 (29%), Positives = 48/99 (48%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C+QKI+ G +RI+K +P G + W+H DC V ++
Sbjct: 110 DFAAEYAKSNRSTCKGCEQKIEKGQIRISKKMVHPEKPQLGMIDNWYHPDCF--VSRRAE 167
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNK 110
+ G+ L ED+E + + P + E +
Sbjct: 168 LGFLPAYGATQLLGFSILKAEDKETLKKQLPATKTEGKR 206
>UNIPROTKB|P26446 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0051287 "NAD binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003950 "NAD+ ADP-ribosyltransferase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0070212
"protein poly-ADP-ribosylation" evidence=IDA] InterPro:IPR001510
InterPro:IPR004102 InterPro:IPR008288 InterPro:IPR012317
InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645 Pfam:PF02877
Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064
PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005634 GO:GO:0051287 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003950 Gene3D:3.30.1740.10 GO:GO:0070212 eggNOG:NOG243963
HOGENOM:HOG000030402 KO:K10798 Gene3D:1.20.142.10
InterPro:IPR008893 Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587
SUPFAM:SSF142921 CTD:142 HOVERGEN:HBG053513 Gene3D:2.20.140.10
EMBL:X52690 IPI:IPI00823125 PIR:JH0581 RefSeq:NP_990594.1
UniGene:Gga.5209 PDB:1A26 PDB:1EFY PDB:1PAX PDB:2PAW PDB:2PAX
PDB:3PAX PDB:4PAX PDBsum:1A26 PDBsum:1EFY PDBsum:1PAX PDBsum:2PAW
PDBsum:2PAX PDBsum:3PAX PDBsum:4PAX ProteinModelPortal:P26446
SMR:P26446 STRING:P26446 PRIDE:P26446 GeneID:396199 KEGG:gga:396199
EvolutionaryTrace:P26446 NextBio:20816251 Uniprot:P26446
Length = 1011
Score = 141 (54.7 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + + AK+GR+ CKKC + I ++R+A M +P GK+ WHH C F K+
Sbjct: 6 DKPYRAEYAKSGRASCKKCGESIAKDSLRLALMVQSPMFDGKVPHWHHYSC----FWKR- 60
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
A+I D+ G+ +L EDQE++
Sbjct: 61 ---ARIVSHTDIDGFPELRWEDQEKI 83
Score = 115 (45.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/99 (29%), Positives = 48/99 (48%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C+QKI+ G +RI+K +P G + W+H DC V ++
Sbjct: 112 DFAAEYAKSNRSTCKGCEQKIEKGQIRISKKMVHPEKPQLGMIDNWYHPDCF--VSRRAE 169
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNK 110
+ G+ L ED+E + + P + E +
Sbjct: 170 LGFLPAYGATQLLGFSILKAEDKETLKKQLPATKTEGKR 208
>UNIPROTKB|F1NL05 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0051287 "NAD binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0032869 "cellular response to insulin stimulus"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0047485 "protein N-terminus binding" evidence=IEA] [GO:0070212
"protein poly-ADP-ribosylation" evidence=IEA] InterPro:IPR001510
InterPro:IPR004102 InterPro:IPR008288 InterPro:IPR012317
InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645 Pfam:PF02877
Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064
PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005635 GO:GO:0005730 GO:GO:0051287 GO:GO:0032869
GO:GO:0006284 GO:GO:0003677 GO:GO:0008270 GO:GO:0005667
GO:GO:0040009 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0000723 GO:GO:0003950 Gene3D:3.30.1740.10 GO:GO:0070212
OMA:SRYWIFR Gene3D:1.20.142.10 InterPro:IPR008893 Pfam:PF05406
SMART:SM00773 SUPFAM:SSF47587 SUPFAM:SSF142921 Gene3D:2.20.140.10
IPI:IPI00823125 GeneTree:ENSGT00390000017341 EMBL:AADN02012180
EMBL:AADN02012181 EMBL:AADN02012182 Ensembl:ENSGALT00000038829
ArrayExpress:F1NL05 Uniprot:F1NL05
Length = 1015
Score = 141 (54.7 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + + AK+GR+ CKKC + I ++R+A M +P GK+ WHH C F K+
Sbjct: 6 DKPYRAEYAKSGRASCKKCGESIAKDSLRLALMVQSPMFDGKVPHWHHYSC----FWKR- 60
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEV 97
A+I D+ G+ +L EDQE++
Sbjct: 61 ---ARIVSHTDIDGFPELRWEDQEKI 83
Score = 115 (45.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/99 (29%), Positives = 48/99 (48%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C+QKI+ G +RI+K +P G + W+H DC V ++
Sbjct: 112 DFAAEYAKSNRSTCKGCEQKIEKGQIRISKKMVHPEKPQLGMIDNWYHPDCF--VSRRAE 169
Query: 72 QTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNK 110
+ G+ L ED+E + + P + E +
Sbjct: 170 LGFLPAYGATQLLGFSILKAEDKETLKKQLPATKTEGKR 208
>UNIPROTKB|F1MU08 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9913
"Bos taurus" [GO:0070212 "protein poly-ADP-ribosylation"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032869 "cellular response to insulin stimulus" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0051287 "NAD
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001510
InterPro:IPR004102 InterPro:IPR008288 InterPro:IPR012317
InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645 Pfam:PF02877
Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064
PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005635 GO:GO:0005730 GO:GO:0051287 GO:GO:0032869
GO:GO:0006284 GO:GO:0003677 GO:GO:0008270 GO:GO:0005667
GO:GO:0040009 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0000723 GO:GO:0003950 Gene3D:3.30.1740.10 GO:GO:0070212
OMA:SRYWIFR Gene3D:1.20.142.10 InterPro:IPR008893 Pfam:PF05406
SMART:SM00773 SUPFAM:SSF47587 SUPFAM:SSF142921 IPI:IPI00697783
UniGene:Bt.4803 Gene3D:2.20.140.10 GeneTree:ENSGT00390000017341
EMBL:DAAA02042671 Ensembl:ENSBTAT00000001113 Uniprot:F1MU08
Length = 1016
Score = 140 (54.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKCK+ I ++R+A M +P GK+ W+H+ C +V
Sbjct: 6 DKLYRVEYAKSGRASCKKCKESIPKDSIRMAFMVQSPMFDGKIPHWYHLSCFWKVGFSIW 65
Query: 72 QTTAKIEVVDDMGGWDD 88
++E ++ WDD
Sbjct: 66 HPDVEVEGFSELR-WDD 81
Score = 117 (46.2 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 32/103 (31%), Positives = 49/103 (47%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F AK+ RS CK C +KID G VR++K P G + W+H C ++ K+
Sbjct: 115 DFGAGYAKSNRSTCKSCMEKIDKGQVRLSKKVVYPDKPQLGMVDCWYHPKCFVQ---KRE 171
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ LT EDQE + + P E + D
Sbjct: 172 ELGFRPEFSASQLMGFSVLTAEDQETLKKQLPAIKGERKRKGD 214
>UNIPROTKB|P18493 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9913
"Bos taurus" [GO:0042802 "identical protein binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0005635 "nuclear
envelope" evidence=ISS] [GO:0003950 "NAD+ ADP-ribosyltransferase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051287 "NAD binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006471 "protein ADP-ribosylation" evidence=IEA]
InterPro:IPR001510 InterPro:IPR004102 InterPro:IPR008288
InterPro:IPR012317 InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645
Pfam:PF02877 Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347
PROSITE:PS50064 PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357
Pfam:PF00533 GO:GO:0005635 GO:GO:0005730 GO:GO:0006355
GO:GO:0051287 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0006351 GO:GO:0042802 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006471 GO:GO:0003950
Gene3D:3.30.1740.10 eggNOG:NOG243963 HOGENOM:HOG000030402 KO:K10798
Gene3D:1.20.142.10 InterPro:IPR008893 Pfam:PF05406 SMART:SM00773
SUPFAM:SSF47587 SUPFAM:SSF142921 EMBL:D90073 EMBL:X06986
EMBL:X06987 IPI:IPI00697783 PIR:JS0428 RefSeq:NP_777176.1
UniGene:Bt.4803 ProteinModelPortal:P18493 SMR:P18493 STRING:P18493
PRIDE:P18493 GeneID:286764 KEGG:bta:286764 CTD:142
HOVERGEN:HBG053513 InParanoid:P18493 OrthoDB:EOG4PG609
BindingDB:P18493 ChEMBL:CHEMBL5691 NextBio:20806425
Gene3D:2.20.140.10 Uniprot:P18493
Length = 1016
Score = 139 (54.0 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKCK+ I ++R+A M +P GK+ W+H+ C +V
Sbjct: 6 DKLYRVEYAKSGRASCKKCKESIPKDSIRMAFMVESPMFDGKIPHWYHLSCFWKVGFSIW 65
Query: 72 QTTAKIEVVDDMGGWDD 88
++E ++ WDD
Sbjct: 66 HPDVEVEGFSELR-WDD 81
Score = 115 (45.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 32/103 (31%), Positives = 49/103 (47%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F AK+ RS CK C +KID G VR++K P G + W+H C ++ K+
Sbjct: 115 DFGAGYAKSNRSTCKSCMEKIDKGQVRLSKKVVYPDKPQLGMVDCWYHPKCFVQ---KRE 171
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ LT EDQE + + P E + D
Sbjct: 172 ELGFRPEFSATHLMGFSVLTAEDQETLKKQLPAIKGERKRKGD 214
>UNIPROTKB|P09874 [details] [associations]
symbol:PARP1 "Poly [ADP-ribose] polymerase 1" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0016540 "protein autoprocessing" evidence=IEA]
[GO:0040009 "regulation of growth rate" evidence=IEA] [GO:0042769
"DNA damage response, detection of DNA damage" evidence=IEA]
[GO:0051287 "NAD binding" evidence=IEA] [GO:0003950 "NAD+
ADP-ribosyltransferase activity" evidence=IDA;TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0047485 "protein N-terminus binding"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006471 "protein ADP-ribosylation" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0070212 "protein poly-ADP-ribosylation"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=TAS] [GO:0007179
"transforming growth factor beta receptor signaling pathway"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0032869 "cellular response to insulin stimulus" evidence=IDA]
[GO:0005667 "transcription factor complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR001510 InterPro:IPR004102 InterPro:IPR008288
InterPro:IPR012317 InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645
Pfam:PF02877 Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347
PROSITE:PS50064 PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357
EMBL:M18112 Pfam:PF00533 GO:GO:0005635 Reactome:REACT_111102
GO:GO:0005730 GO:GO:0051287 GO:GO:0032869 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
Pathway_Interaction_DB:caspase_pathway EMBL:CH471098 GO:GO:0005667
GO:GO:0000122 GO:GO:0007179 GO:GO:0040009 GO:GO:0006367
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0000723
Pathway_Interaction_DB:faspathway EMBL:AL359704 GO:GO:0016540
GO:GO:0003950 GO:GO:0042769 Gene3D:3.30.1740.10 GO:GO:0070212
BRENDA:2.4.2.30 eggNOG:NOG243963 HOGENOM:HOG000030402 KO:K10798
OMA:SRYWIFR Gene3D:1.20.142.10 InterPro:IPR008893 Pfam:PF05406
SMART:SM00773 SUPFAM:SSF47587 SUPFAM:SSF142921 CTD:142
HOVERGEN:HBG053513 OrthoDB:EOG4PG609 Gene3D:2.20.140.10 EMBL:J03473
EMBL:M32721 EMBL:M29786 EMBL:M29545 EMBL:M29766 EMBL:M29767
EMBL:M29768 EMBL:M29769 EMBL:M29770 EMBL:M29771 EMBL:M29772
EMBL:M29773 EMBL:M29774 EMBL:M29775 EMBL:M29776 EMBL:M29777
EMBL:M29778 EMBL:M29779 EMBL:M29780 EMBL:M29781 EMBL:M29783
EMBL:M29784 EMBL:M29785 EMBL:M29544 EMBL:M29782 EMBL:AF524947
EMBL:AL359742 EMBL:BC037545 EMBL:X56140 EMBL:X56141 EMBL:X16674
EMBL:M60436 EMBL:M17081 IPI:IPI00449049 PIR:A29725
RefSeq:NP_001609.2 UniGene:Hs.177766 PDB:1UK0 PDB:1UK1 PDB:1WOK
PDB:2COK PDB:2CR9 PDB:2CS2 PDB:2DMJ PDB:2JVN PDB:2L30 PDB:2L31
PDB:2RCW PDB:2RD6 PDB:2RIQ PDB:3GJW PDB:3GN7 PDB:3L3L PDB:3L3M
PDB:3OD8 PDB:3ODA PDB:3ODC PDB:3ODE PDB:4AV1 PDB:4DQY PDBsum:1UK0
PDBsum:1UK1 PDBsum:1WOK PDBsum:2COK PDBsum:2CR9 PDBsum:2CS2
PDBsum:2DMJ PDBsum:2JVN PDBsum:2L30 PDBsum:2L31 PDBsum:2RCW
PDBsum:2RD6 PDBsum:2RIQ PDBsum:3GJW PDBsum:3GN7 PDBsum:3L3L
PDBsum:3L3M PDBsum:3OD8 PDBsum:3ODA PDBsum:3ODC PDBsum:3ODE
PDBsum:4AV1 PDBsum:4DQY ProteinModelPortal:P09874 SMR:P09874
DIP:DIP-38N IntAct:P09874 MINT:MINT-104344 STRING:P09874
PhosphoSite:P09874 DMDM:130781 SWISS-2DPAGE:P09874 PaxDb:P09874
PeptideAtlas:P09874 PRIDE:P09874 DNASU:142 Ensembl:ENST00000366794
GeneID:142 KEGG:hsa:142 UCSC:uc001hqd.4 GeneCards:GC01M224102
H-InvDB:HIX0023551 HGNC:HGNC:270 HPA:CAB000147 HPA:CAB003839
HPA:CAB003840 HPA:HPA045168 MIM:173870 neXtProt:NX_P09874
PharmGKB:PA32 InParanoid:P09874 PhylomeDB:P09874 BindingDB:P09874
ChEMBL:CHEMBL3105 ChiTaRS:PARP1 EvolutionaryTrace:P09874
GenomeRNAi:142 NextBio:565 PMAP-CutDB:P09874 ArrayExpress:P09874
Bgee:P09874 CleanEx:HS_PARP1 Genevestigator:P09874
GermOnline:ENSG00000143799 Uniprot:P09874
Length = 1014
Score = 138 (53.6 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDD 88
+++ ++ WDD
Sbjct: 66 HPDVEVDGFSELR-WDD 81
Score = 110 (43.8 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV---KNRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGD 211
>RGD|2053 [details] [associations]
symbol:Parp1 "poly (ADP-ribose) polymerase 1" species:10116 "Rattus
norvegicus" [GO:0000723 "telomere maintenance" evidence=IEA;ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003950 "NAD+
ADP-ribosyltransferase activity" evidence=ISO;IDA;IMP] [GO:0005634
"nucleus" evidence=ISO;NAS;IDA] [GO:0005635 "nuclear envelope"
evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005667
"transcription factor complex" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0006259 "DNA metabolic process"
evidence=ISO] [GO:0006284 "base-excision repair" evidence=IEA;ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006471
"protein ADP-ribosylation" evidence=ISO;IDA] [GO:0007179
"transforming growth factor beta receptor signaling pathway"
evidence=IMP] [GO:0008134 "transcription factor binding"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016540 "protein autoprocessing" evidence=IDA] [GO:0016763
"transferase activity, transferring pentosyl groups" evidence=NAS]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0023019 "signal
transduction involved in regulation of gene expression" evidence=IMP]
[GO:0032869 "cellular response to insulin stimulus" evidence=IEA;ISO]
[GO:0040009 "regulation of growth rate" evidence=IEA;ISO] [GO:0042769
"DNA damage response, detection of DNA damage" evidence=IDA]
[GO:0043234 "protein complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0047485 "protein N-terminus binding"
evidence=IEA;ISO] [GO:0051287 "NAD binding" evidence=IDA] [GO:0060391
"positive regulation of SMAD protein import into nucleus"
evidence=IMP] [GO:0070212 "protein poly-ADP-ribosylation"
evidence=ISO;IMP] [GO:0070412 "R-SMAD binding" evidence=IPI]
[GO:2000679 "positive regulation of transcription regulatory region
DNA binding" evidence=IMP] InterPro:IPR001510 InterPro:IPR004102
InterPro:IPR008288 InterPro:IPR012317 InterPro:IPR012982 Pfam:PF00644
Pfam:PF00645 Pfam:PF02877 Pfam:PF08063 PIRSF:PIRSF000489
PROSITE:PS00347 PROSITE:PS50064 PROSITE:PS51059 PROSITE:PS51060
InterPro:IPR001357 Pfam:PF00533 RGD:2053 GO:GO:0005634 GO:GO:0005635
GO:GO:0005730 GO:GO:0051287 GO:GO:0032869 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 GO:GO:0005667
GO:GO:0007179 GO:GO:0040009 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0000723 GO:GO:0060391 GO:GO:0023019
GO:GO:0016540 GO:GO:0003950 GO:GO:0042769 Gene3D:3.30.1740.10
GO:GO:2000679 GO:GO:0070212 eggNOG:NOG243963 HOGENOM:HOG000030402
KO:K10798 OMA:SRYWIFR Gene3D:1.20.142.10 InterPro:IPR008893
Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587 SUPFAM:SSF142921 CTD:142
HOVERGEN:HBG053513 OrthoDB:EOG4PG609 Gene3D:2.20.140.10 EMBL:U94340
EMBL:BC085765 EMBL:X65496 EMBL:X65497 IPI:IPI00231678 PIR:S21163
PIR:S26057 RefSeq:NP_037195.1 UniGene:Rn.11327 PDB:2LE0 PDBsum:2LE0
ProteinModelPortal:P27008 SMR:P27008 STRING:P27008 PhosphoSite:P27008
PRIDE:P27008 Ensembl:ENSRNOT00000004232 GeneID:25591 KEGG:rno:25591
UCSC:RGD:2053 GeneTree:ENSGT00390000017341 InParanoid:P27008
BindingDB:P27008 ChEMBL:CHEMBL4664 NextBio:607267
Genevestigator:P27008 GermOnline:ENSRNOG00000003084 Uniprot:P27008
Length = 1014
Score = 136 (52.9 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 ERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIR 65
Query: 72 QTTAKIEVVDDMGGWDD 88
Q +++ ++ WDD
Sbjct: 66 QPDTEVDGFSELR-WDD 81
Score = 106 (42.4 bits), Expect = 0.00011, P = 0.00011
Identities = 28/103 (27%), Positives = 51/103 (49%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C + K +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQLGMIDRWYHPTCFV---KNRD 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L+ ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAVKSEGKRKCD 211
>UNIPROTKB|I3LDH3 [details] [associations]
symbol:PARP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070212 "protein poly-ADP-ribosylation" evidence=IEA]
[GO:0047485 "protein N-terminus binding" evidence=IEA] [GO:0040009
"regulation of growth rate" evidence=IEA] [GO:0032869 "cellular
response to insulin stimulus" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0051287 "NAD
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001510
InterPro:IPR004102 InterPro:IPR008288 InterPro:IPR012317
InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645 Pfam:PF02877
Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064
PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005635 GO:GO:0005730 GO:GO:0051287 GO:GO:0032869
GO:GO:0006284 GO:GO:0003677 GO:GO:0008270 GO:GO:0005667
GO:GO:0040009 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0000723 GO:GO:0003950 Gene3D:3.30.1740.10 GO:GO:0070212
KO:K10798 OMA:SRYWIFR Gene3D:1.20.142.10 InterPro:IPR008893
Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587 SUPFAM:SSF142921 CTD:142
Gene3D:2.20.140.10 GeneTree:ENSGT00390000017341 EMBL:FP312825
EMBL:FP340210 RefSeq:XP_003357689.1 Ensembl:ENSSSCT00000028077
GeneID:100621034 KEGG:ssc:100621034 Uniprot:I3LDH3
Length = 1018
Score = 136 (52.9 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
DK + V+ AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V R
Sbjct: 6 DKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHAIR 65
Query: 72 QTTAKIEVVDDMGGWDD 88
+++ ++ WDD
Sbjct: 66 HPDIEVDGFSELR-WDD 81
Score = 113 (44.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 29/103 (28%), Positives = 52/103 (50%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G VR++K +P G + +W+H +C ++ +
Sbjct: 112 DFAAEYAKSNRSTCKGCMEKIEKGHVRLSKKMLDPEKPQLGMIDRWYHPNCFVQ---NRE 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ LT ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLTAEDKEALKKQLPGIKSEGKRKGD 211
>TAIR|locus:2042511 [details] [associations]
symbol:PARP1 "POLY(ADP-RIBOSE) POLYMERASE 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003950 "NAD+ ADP-ribosyltransferase activity"
evidence=IEA;ISS;IDA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;ISS] [GO:0006471 "protein
ADP-ribosylation" evidence=ISS;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEP] [GO:0006979 "response to oxidative
stress" evidence=IEP] [GO:0009737 "response to abscisic acid
stimulus" evidence=IEP] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA] [GO:0000911 "cytokinesis by
cell plate formation" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007067 "mitosis" evidence=RCA]
[GO:0007129 "synapsis" evidence=RCA] [GO:0007131 "reciprocal
meiotic recombination" evidence=RCA] [GO:0007267 "cell-cell
signaling" evidence=RCA] [GO:0009555 "pollen development"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010073 "meristem maintenance" evidence=RCA] [GO:0010212
"response to ionizing radiation" evidence=RCA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0010564 "regulation of cell cycle process"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0016570
"histone modification" evidence=RCA] [GO:0031047 "gene silencing by
RNA" evidence=RCA] [GO:0035196 "production of miRNAs involved in
gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] [GO:0051726 "regulation
of cell cycle" evidence=RCA] InterPro:IPR001510 InterPro:IPR004102
InterPro:IPR008288 InterPro:IPR012317 InterPro:IPR012982
Pfam:PF00644 Pfam:PF00645 Pfam:PF02877 Pfam:PF08063
PIRSF:PIRSF000489 PROSITE:PS50064 PROSITE:PS51059 PROSITE:PS51060
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009737 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006979 GO:GO:0051287
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
EMBL:AC006593 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0006471 GO:GO:0003950 GO:GO:0009628 Gene3D:3.30.1740.10
EMBL:AJ131705 EMBL:AY091061 EMBL:AY150460 IPI:IPI00537729
PIR:C84719 PIR:T51353 RefSeq:NP_850165.1 UniGene:At.65741 PDB:1V9X
PDBsum:1V9X ProteinModelPortal:Q9ZP54 SMR:Q9ZP54 STRING:Q9ZP54
PaxDb:Q9ZP54 PRIDE:Q9ZP54 EnsemblPlants:AT2G31320.1 GeneID:817690
KEGG:ath:AT2G31320 GeneFarm:4815 TAIR:At2g31320 eggNOG:NOG243963
HOGENOM:HOG000030402 InParanoid:Q9ZP54 KO:K10798 OMA:SRYWIFR
PhylomeDB:Q9ZP54 ProtClustDB:PLN03123 EvolutionaryTrace:Q9ZP54
Genevestigator:Q9ZP54 GermOnline:AT2G31320 Gene3D:1.20.142.10
InterPro:IPR008893 Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587
SUPFAM:SSF142921 Uniprot:Q9ZP54
Length = 983
Score = 133 (51.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 35/95 (36%), Positives = 51/95 (53%)
Query: 16 W-VDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
W + AK+ RS CK CK I+ R+ K+ + G M W+H CIL KK +Q
Sbjct: 8 WRAEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL---KKTKQ-- 62
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESN 109
I+ VDD+ G + L EDQ+++ ++ ES SN
Sbjct: 63 --IKSVDDVEGIESLRWEDQQKI-RKYVESGAGSN 94
Score = 128 (50.1 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ ++ ++T R+GC+KC +KI G VRI P G M WHH C LE+ ++
Sbjct: 114 YGIEVSQTSRAGCRKCSEKILKGEVRIFSKPEGPGNKGLM--WHHAKCFLEM-----SSS 166
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPESL 105
++E + GW + DQE +L ++L
Sbjct: 167 TELE---SLSGWRSIPDSDQEALLPLVKKAL 194
>FB|FBgn0010247 [details] [associations]
symbol:Parp "Poly-(ADP-ribose) polymerase" species:7227
"Drosophila melanogaster" [GO:0003950 "NAD+ ADP-ribosyltransferase
activity" evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006471 "protein ADP-ribosylation" evidence=IMP;NAS;TAS]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0005730
"nucleolus" evidence=IDA;TAS] [GO:0005703 "polytene chromosome
puff" evidence=IDA;TAS] [GO:0051276 "chromosome organization"
evidence=TAS] [GO:0035079 "polytene chromosome puffing"
evidence=TAS] [GO:0007552 "metamorphosis" evidence=TAS] [GO:0009303
"rRNA transcription" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0005700 "polytene
chromosome" evidence=IDA;TAS] [GO:0006963 "positive regulation of
antibacterial peptide biosynthetic process" evidence=IMP]
[GO:0005719 "nuclear euchromatin" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IMP] [GO:0035080 "heat shock-mediated
polytene chromosome puffing" evidence=IEP;IMP] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051457 "maintenance of
protein location in nucleus" evidence=IMP] [GO:0005694 "chromosome"
evidence=IDA] [GO:0048812 "neuron projection morphogenesis"
evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0042393 "histone binding" evidence=IPI]
[GO:0035363 "histone locus body" evidence=IDA] [GO:0015030 "Cajal
body" evidence=IDA] [GO:0030576 "Cajal body organization"
evidence=IMP] InterPro:IPR001510 InterPro:IPR004102
InterPro:IPR008288 InterPro:IPR012317 InterPro:IPR012982
Pfam:PF00644 Pfam:PF00645 Pfam:PF02877 Pfam:PF08063
PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064 PROSITE:PS51059
PROSITE:PS51060 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005730
GO:GO:0006355 GO:GO:0051287 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045087 GO:GO:0016568 GO:GO:0007552
GO:GO:0043484 GO:GO:0005719 GO:GO:0009303 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0051457 GO:GO:0006471
GO:GO:0006963 GO:GO:0005703 GO:GO:0003950 GO:GO:0007000
Gene3D:3.30.1740.10 GO:GO:0035080 eggNOG:NOG243963 KO:K10798
OMA:SRYWIFR Gene3D:1.20.142.10 InterPro:IPR008893 Pfam:PF05406
SMART:SM00773 SUPFAM:SSF47587 SUPFAM:SSF142921 Gene3D:2.20.140.10
ChiTaRS:PARP1 GeneTree:ENSGT00390000017341 EMBL:D13806
EMBL:AF051548 EMBL:AF051544 EMBL:AF051545 EMBL:AF051546
EMBL:AF051547 EMBL:AF533701 EMBL:CM000459 EMBL:BT015238
EMBL:AY118947 PIR:A47474 RefSeq:NP_001015396.2
RefSeq:NP_001104452.1 UniGene:Dm.7847 ProteinModelPortal:P35875
SMR:P35875 DIP:DIP-23413N MINT:MINT-836001 STRING:P35875
PaxDb:P35875 PRIDE:P35875 EnsemblMetazoa:FBtr0113885 GeneID:3355109
KEGG:dme:Dmel_CG40411 CTD:3355109 FlyBase:FBgn0010247
InParanoid:P35875 OrthoDB:EOG4JM64P PhylomeDB:P35875
GenomeRNAi:3355109 NextBio:850624 Bgee:P35875 GermOnline:CG40411
Uniprot:P35875
Length = 994
Score = 131 (51.2 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 33/102 (32%), Positives = 50/102 (49%)
Query: 13 KNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNP-FGS--GKMKQWHHIDCILEVFKK 69
K+F ++ AK+ RS C+ C+QKI+ VR+ K Y+ G G WHH++C F +
Sbjct: 109 KDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLEC----FAQ 164
Query: 70 QRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKD 111
R +DM G+ L +DQ +V + P E D
Sbjct: 165 LRSELGWFASGEDMPGFQSLADDDQAKVKNAIPPIKSEELPD 206
Score = 117 (46.2 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 32/93 (34%), Positives = 48/93 (51%)
Query: 15 FWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTT 74
+ + A+TGR+ CK CK I T+RIA M + F K+ W H C FK QR ++
Sbjct: 7 YLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKVPNWFHKTCF---FKNQRPSS 63
Query: 75 AKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRE 107
V D+ +L DQ+E L+ E+++E
Sbjct: 64 -----VGDIQNIGNLRFADQKE-LTDLVENIQE 90
Score = 38 (18.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 99 SRFPESLRESNKDRDV 114
S F SL ++NK+ DV
Sbjct: 357 STFSRSLLKTNKNNDV 372
>MGI|MGI:1340806 [details] [associations]
symbol:Parp1 "poly (ADP-ribose) polymerase family, member 1"
species:10090 "Mus musculus" [GO:0000723 "telomere maintenance"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003950
"NAD+ ADP-ribosyltransferase activity" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;TAS] [GO:0005635 "nuclear envelope" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005667 "transcription
factor complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006259 "DNA metabolic process" evidence=IMP]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006284 "base-excision
repair" evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006471 "protein ADP-ribosylation"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007179 "transforming growth factor beta receptor
signaling pathway" evidence=ISO] [GO:0008134 "transcription factor
binding" evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016540 "protein autoprocessing" evidence=ISO] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016757 "transferase
activity, transferring glycosyl groups" evidence=IEA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0023019 "signal transduction
involved in regulation of gene expression" evidence=ISO]
[GO:0032869 "cellular response to insulin stimulus" evidence=ISO]
[GO:0040009 "regulation of growth rate" evidence=IMP] [GO:0042769
"DNA damage response, detection of DNA damage" evidence=ISO]
[GO:0043234 "protein complex" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0047485 "protein N-terminus binding" evidence=ISO] [GO:0051287
"NAD binding" evidence=ISO] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=ISO] [GO:0070212
"protein poly-ADP-ribosylation" evidence=ISO] [GO:0070412 "R-SMAD
binding" evidence=ISO] [GO:2000679 "positive regulation of
transcription regulatory region DNA binding" evidence=ISO]
InterPro:IPR001510 InterPro:IPR004102 InterPro:IPR008288
InterPro:IPR012317 InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645
Pfam:PF02877 Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347
PROSITE:PS50064 PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357
MGI:MGI:1340806 Pfam:PF00533 GO:GO:0005737 GO:GO:0043234
GO:GO:0005654 GO:GO:0005730 GO:GO:0006355 GO:GO:0051287
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0040009 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0006471 GO:GO:0000723 GO:GO:0003950
Gene3D:3.30.1740.10 eggNOG:NOG243963 Gene3D:1.20.142.10
InterPro:IPR008893 Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587
SUPFAM:SSF142921 HOVERGEN:HBG053513 OrthoDB:EOG4PG609
Gene3D:2.20.140.10 EMBL:X14206 EMBL:AF126717 IPI:IPI00112473
IPI:IPI00759945 PIR:S04200 UniGene:Mm.277779
ProteinModelPortal:P11103 SMR:P11103 DIP:DIP-39371N IntAct:P11103
MINT:MINT-237428 STRING:P11103 PhosphoSite:P11103 PaxDb:P11103
PRIDE:P11103 InParanoid:P11103 BindingDB:P11103 ChEMBL:CHEMBL3740
CleanEx:MM_PARP1 Genevestigator:P11103
GermOnline:ENSMUSG00000026496 Uniprot:P11103
Length = 1013
Score = 131 (51.2 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 12 DKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQR 71
++ + V AK+GR+ CKKC + I ++R+A M +P GK+ W+H C +V + R
Sbjct: 6 ERLYRVQYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGQSIR 65
Query: 72 QTTAKIEVVDDMGGWDD 88
+++ ++ WDD
Sbjct: 66 HPDVEVDGFSELR-WDD 81
Score = 111 (44.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 29/103 (28%), Positives = 52/103 (50%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H C + KK+
Sbjct: 112 DFAAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHPTCFV---KKRD 168
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E + G+ L+ ED+E + + P E + D
Sbjct: 169 ELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGD 211
>TAIR|locus:2086355 [details] [associations]
symbol:AT3G14890 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001510
Pfam:PF00645 PROSITE:PS50064 EMBL:CP002686 GO:GO:0005654
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 Gene3D:3.40.50.1000
InterPro:IPR023214 SUPFAM:SSF56784 GO:GO:0008270 GO:GO:0006281
GO:GO:0006351 GO:GO:0016301 GO:GO:0046403 EMBL:AP000370
BRENDA:3.1.3.7 Gene3D:3.30.1740.10 InterPro:IPR006549
TIGRFAMs:TIGR01662 eggNOG:COG0241 InterPro:IPR013954 Pfam:PF08645
InterPro:IPR015636 InterPro:IPR006551 PANTHER:PTHR12083
TIGRFAMs:TIGR01664 KO:K08073 EMBL:BT003865 EMBL:BT005159
EMBL:AF453835 IPI:IPI00527473 IPI:IPI00895619 RefSeq:NP_188107.3
RefSeq:NP_850586.2 UniGene:At.39147 ProteinModelPortal:Q84JE8
SMR:Q84JE8 PaxDb:Q84JE8 PRIDE:Q84JE8 EnsemblPlants:AT3G14890.1
GeneID:820718 KEGG:ath:AT3G14890 TAIR:At3g14890
HOGENOM:HOG000082825 InParanoid:Q84JE8 OMA:DSIKDHD
ProtClustDB:CLSN2680840 BRENDA:3.1.3.32 Genevestigator:Q84JE8
Uniprot:Q84JE8
Length = 694
Score = 123 (48.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/92 (33%), Positives = 43/92 (46%)
Query: 4 KEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCI 63
K+ N D + AK+ RS CKKC Q I +R+ + N F MKQWHH+ C
Sbjct: 317 KDVKNSPDSSKVISEYAKSSRSTCKKCSQTIAAKELRLGLVTRN-FRGFDMKQWHHLGC- 374
Query: 64 LEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQE 95
F +E D+GG+ +L DQ+
Sbjct: 375 ---FPVDSDPIVSVE---DIGGFSELQSGDQD 400
Score = 107 (42.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 20 AKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIEV 79
AK+ RS C+ C KI ++R+ + G M +WHH DC F ++ A
Sbjct: 55 AKSNRSSCRSCSNKIAVKSLRLGLISKGR-GGVDMTRWHHFDC----FPTDSESIAS--- 106
Query: 80 VDDMGGWDDLTPEDQEEVLSRFPE 103
VDD+ G L EDQ+ L++ E
Sbjct: 107 VDDIQGLSALEKEDQD-ALTKLVE 129
Score = 101 (40.6 bits), Expect = 0.00024, P = 0.00024
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 18 DRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKI 77
D AK+ RS C +C Q I + +R+ + + G + +WHH+ C F I
Sbjct: 168 DNAKSSRSSCNRCSQTIVSKDLRVGLVTEDSRGFD-ITRWHHLGCFPIDFHP-------I 219
Query: 78 EVVDDMGGWDDLTPEDQEEV 97
+ V+D+GG+ L DQ E+
Sbjct: 220 DSVEDIGGYSSLEKGDQMEL 239
>UNIPROTKB|J9NXE3 [details] [associations]
symbol:PARP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051287 "NAD binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006471 "protein
ADP-ribosylation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001510
InterPro:IPR004102 InterPro:IPR008288 InterPro:IPR012317
InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645 Pfam:PF02877
Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064
PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005634 GO:GO:0051287 GO:GO:0003677 GO:GO:0008270
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006471
GO:GO:0003950 Gene3D:3.30.1740.10 KO:K10798 Gene3D:1.20.142.10
InterPro:IPR008893 Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587
SUPFAM:SSF142921 CTD:142 Gene3D:2.20.140.10
GeneTree:ENSGT00390000017341 EMBL:AAEX03005272 RefSeq:XP_547506.2
Ensembl:ENSCAFT00000045712 GeneID:490385 KEGG:cfa:490385
Uniprot:J9NXE3
Length = 972
Score = 120 (47.3 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 30/103 (29%), Positives = 52/103 (50%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H +C + K +
Sbjct: 70 DFAAEYAKSNRSTCKGCLEKIEKGQIRLSKKMLDPEKPQLGMIDRWYHPNCFV---KNRE 126
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E G+ LTPED+E + + P E + D
Sbjct: 127 ELGFRPEYSASQFKGFGLLTPEDKEALKKQLPGVKSEGKRKGD 169
>UNIPROTKB|F1Q2M3 [details] [associations]
symbol:PARP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003950
"NAD+ ADP-ribosyltransferase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0051287 "NAD binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006471 "protein
ADP-ribosylation" evidence=IEA] InterPro:IPR001510
InterPro:IPR004102 InterPro:IPR008288 InterPro:IPR012317
InterPro:IPR012982 Pfam:PF00644 Pfam:PF00645 Pfam:PF02877
Pfam:PF08063 PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064
PROSITE:PS51059 PROSITE:PS51060 InterPro:IPR001357 GO:GO:0005634
GO:GO:0051287 GO:GO:0003677 GO:GO:0008270 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006471 GO:GO:0003950
Gene3D:3.30.1740.10 OMA:SRYWIFR Gene3D:1.20.142.10
InterPro:IPR008893 Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587
SUPFAM:SSF142921 Gene3D:2.20.140.10 GeneTree:ENSGT00390000017341
EMBL:AAEX03005272 Ensembl:ENSCAFT00000025541 Uniprot:F1Q2M3
Length = 976
Score = 120 (47.3 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 30/103 (29%), Positives = 52/103 (50%)
Query: 14 NFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGS--GKMKQWHHIDCILEVFKKQR 71
+F + AK+ RS CK C +KI+ G +R++K +P G + +W+H +C + K +
Sbjct: 72 DFAAEYAKSNRSTCKGCLEKIEKGQIRLSKKMLDPEKPQLGMIDRWYHPNCFV---KNRE 128
Query: 72 QTTAKIEV-VDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRD 113
+ + E G+ LTPED+E + + P E + D
Sbjct: 129 ELGFRPEYSASQFKGFGLLTPEDKEALKKQLPGVKSEGKRKGD 171
>WB|WBGene00004049 [details] [associations]
symbol:pme-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003950 "NAD+ ADP-ribosyltransferase
activity" evidence=IEA] [GO:0006471 "protein ADP-ribosylation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0051287 "NAD
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR001510 InterPro:IPR004102
InterPro:IPR008288 InterPro:IPR012317 InterPro:IPR012982
Pfam:PF00644 Pfam:PF00645 Pfam:PF02877 Pfam:PF08063
PIRSF:PIRSF000489 PROSITE:PS00347 PROSITE:PS50064 PROSITE:PS51059
PROSITE:PS51060 GO:GO:0005634 GO:GO:0051287 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006281 GO:GO:0006974
GO:GO:0006471 EMBL:FO081777 GO:GO:0003950 Gene3D:3.30.1740.10
eggNOG:NOG243963 HOGENOM:HOG000030402 KO:K10798 Gene3D:1.20.142.10
InterPro:IPR008893 Pfam:PF05406 SMART:SM00773 SUPFAM:SSF47587
SUPFAM:SSF142921 Gene3D:2.20.140.10 GeneTree:ENSGT00390000017341
EMBL:AF499444 RefSeq:NP_491072.1 ProteinModelPortal:Q9N4H4
SMR:Q9N4H4 PaxDb:Q9N4H4 EnsemblMetazoa:Y71F9AL.18.1
EnsemblMetazoa:Y71F9AL.18.2 GeneID:266823 KEGG:cel:CELE_Y71F9AL.18
UCSC:Y71F9AL.18.1 CTD:266823 WormBase:Y71F9AL.18 InParanoid:Q9N4H4
OMA:HYELLRW NextBio:953164 Uniprot:Q9N4H4
Length = 945
Score = 102 (41.0 bits), Expect = 0.00028, P = 0.00028
Identities = 30/97 (30%), Positives = 46/97 (47%)
Query: 1 MSDKEEPNPEDDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFGSGKMKQWHHI 60
M EP P + ++ AK+GRS CK CK+ I +R++ + F G M W H
Sbjct: 1 MIHSNEPLP-----YAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHY 55
Query: 61 DCILEVFKKQRQTTAKIEVVDDMGGWDDLTPEDQEEV 97
+C + K + I + + G D L EDQE++
Sbjct: 56 NCF---WIKMIRGRDDINI-SSIRGVDWLRWEDQEKL 88
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.426 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 149 133 0.00091 102 3 11 22 0.43 31
30 0.43 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 596 (63 KB)
Total size of DFA: 159 KB (2095 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.34u 0.10s 15.44t Elapsed: 00:00:02
Total cpu time: 15.35u 0.10s 15.45t Elapsed: 00:00:02
Start: Thu Aug 15 15:54:08 2013 End: Thu Aug 15 15:54:10 2013