RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14580
         (149 letters)



>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 117

 Score = 96.2 bits (239), Expect = 2e-27
 Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 20/128 (15%)

Query: 11  DDKNFWVDRAKTGRSGCKKCKQKIDTGTVRIAKMGYNPFG--SGKMKQWHHIDCILEVFK 68
            ++ F VD AK G +GCKKCK+KI  G  RI K+  NPF    G MK+W+HI C+ E  +
Sbjct: 2   AEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLE 61

Query: 69  KQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSK 128
           + R TT KIE + ++ GW++L   ++E++                   + I   S K + 
Sbjct: 62  RARATTKKIEDLTELEGWEELEDNEKEQIT------------------QHIADLSSKAAG 103

Query: 129 TPKKKAVA 136
           TPKKKAV 
Sbjct: 104 TPKKKAVV 111


>d2iiza1 d.58.4.14 (A:5-310) Melanin biosynthesis protein TyrA
           {Shewanella oneidensis [TaxId: 70863]}
          Length = 306

 Score = 27.9 bits (62), Expect = 0.51
 Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 82  DMGGWDDLTPEDQEEVLSRFPESLRESNKDRDVPERKIPSSSEKKSKTPKKKAVAYFCLI 141
           ++  W  L  + QE+++ R  +       + +      P +S  K    K +      ++
Sbjct: 184 NLSKWHRLPLKKQEDIIGRTKQD------NIEYESEDKPLTSHIKRVNLKDENGKSIEIL 237

Query: 142 R 142
           R
Sbjct: 238 R 238


>d2uy6b1 b.2.3.2 (B:10-163) Pap fimbrial major pilin protein PapA
          {Escherichia coli [TaxId: 562]}
          Length = 154

 Score = 27.1 bits (59), Expect = 0.71
 Identities = 8/60 (13%), Positives = 16/60 (26%)

Query: 32 QKIDTGTVRIAKMGYNPFGSGKMKQWHHIDCILEVFKKQRQTTAKIEVVDDMGGWDDLTP 91
          Q ID G +  + +               ++C +  FK           +   G   +   
Sbjct: 22 QSIDFGQLSKSFLEAGGVSKPMDLDIELVNCDITAFKGGNGAKKGTVKLAFTGPIVNGHS 81


>d2gvka1 d.58.4.14 (A:8-316) Hypothetical protein BT1219
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 309

 Score = 26.8 bits (59), Expect = 1.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 82  DMGGWDDLTPEDQEEVLSRFPES 104
           DM  W+ L  E QE+V+ R   +
Sbjct: 188 DMVAWNALPVEQQEKVIGRHKFN 210


>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2
           {Corynebacterium ammoniagenes [TaxId: 1697]}
          Length = 284

 Score = 25.9 bits (56), Expect = 2.4
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 63  ILEVFKKQRQ---TTAKIEVVDDMGGWDDLTPEDQEEVLSRF 101
            LEV+ +         KI V +D+  W+ +TP++Q   +  F
Sbjct: 16  DLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVF 57


>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase
          (Pantoate-beta-alanine ligase, PanC) {Mycobacterium
          tuberculosis [TaxId: 1773]}
          Length = 286

 Score = 25.2 bits (54), Expect = 4.1
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 49 FGSGKMKQWHHIDCILEVFKKQRQTTAKIEVVDDMGG 85
          F  G++  +     + +V +  R T  ++ +V  MG 
Sbjct: 4  FHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGA 40


>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308
           {Desulfitobacterium hafniense [TaxId: 49338]}
          Length = 251

 Score = 24.8 bits (54), Expect = 5.1
 Identities = 3/33 (9%), Positives = 10/33 (30%)

Query: 68  KKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSR 100
           +   +    + +++      D      E +L  
Sbjct: 135 ESLLEPICDLSILEWSPEEGDYPLPASEFILPE 167


>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 283

 Score = 24.7 bits (53), Expect = 5.3
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 63  ILEVFKKQRQ---TTAKIEVVDDMGGWDDLTPEDQEEVLSRF 101
            LEV+ +         K+ + +D+  W  L+  +Q+  +  F
Sbjct: 14  DLEVWNRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVF 55


>d2d9ra1 b.129.2.1 (A:20-104) Hypothetical protein PG0164
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 85

 Score = 23.1 bits (50), Expect = 7.9
 Identities = 8/27 (29%), Positives = 10/27 (37%)

Query: 74  TAKIEVVDDMGGWDDLTPEDQEEVLSR 100
            A I  V DM       P D + V  +
Sbjct: 6   DAIIRQVPDMDAAYVEIPFDVKTVYGK 32


>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit
           {Methylosinus trichosporium [TaxId: 426]}
          Length = 383

 Score = 24.0 bits (52), Expect = 9.7
 Identities = 6/34 (17%), Positives = 16/34 (47%)

Query: 68  KKQRQTTAKIEVVDDMGGWDDLTPEDQEEVLSRF 101
           ++ R T   +      G    + P  ++E+L+++
Sbjct: 108 EEARYTQRFLAAYSSEGSIRTIDPYWRDEILNKY 141


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0511    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 598,928
Number of extensions: 27050
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 19
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.2 bits)