BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14581
(124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49916|DNLI3_HUMAN DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2
Length = 1009
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 58/68 (85%)
Query: 37 VLEHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKS 96
V + K VWEI+GAEFS++E HTADGISIRFPR T+IRDDKDWK+ATNLP+LK L++ S
Sbjct: 773 VPDPKKAAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLS 832
Query: 97 KETSDFTL 104
KE +DFT+
Sbjct: 833 KEKADFTV 840
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 30/34 (88%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHK 41
+SEIKYDGERVQVHK G+ F YFSRSLKPVL HK
Sbjct: 504 FSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHK 537
>sp|P97386|DNLI3_MOUSE DNA ligase 3 OS=Mus musculus GN=Lig3 PE=1 SV=2
Length = 1015
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 57/68 (83%)
Query: 37 VLEHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKS 96
V + K VWEI+GAEFS++E HTADGISIRFPR T+IRDDKDWK+ATNLP+LK L++ S
Sbjct: 778 VPDPKKAAVWEITGAEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLS 837
Query: 97 KETSDFTL 104
K+ +DF +
Sbjct: 838 KDKADFAV 845
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 31/34 (91%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHK 41
+SEIKYDGERVQVHKKG+ F YFSRSLKPVL HK
Sbjct: 509 FSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHK 542
>sp|P33798|DNLI_VAR67 DNA ligase OS=Variola virus (isolate Human/India/Ind3/1967) GN=LIG
PE=3 SV=1
Length = 552
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 41 KAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFK 94
K +WEISGAEF+ ++ HTA+GISIRFPR T+IR+DK WK +T+L +L L K
Sbjct: 498 KQSQIWEISGAEFTSSKSHTANGISIRFPRFTRIREDKTWKESTHLNDLVNLTK 551
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQA-------EIHT 60
++E+KYDGERVQVHK NEF +FSR++KPVL +K + E F +A EI
Sbjct: 227 FAEVKYDGERVQVHKNNNEFAFFSRNMKPVLSYKVDYLKEYIPKAFKKATSIVLDSEIVL 286
Query: 61 ADGISIRFP 69
D +++ P
Sbjct: 287 VDEHNVQLP 295
>sp|P20492|DNLI_VACCC DNA ligase OS=Vaccinia virus (strain Copenhagen) GN=LIG PE=1 SV=1
Length = 552
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 41 KAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFK 94
K +WEISGAEF+ ++ HTA+GISIRFPR T+IR+DK WK +T+L +L L K
Sbjct: 498 KQSQIWEISGAEFTSSKSHTANGISIRFPRFTRIREDKTWKESTHLNDLVNLTK 551
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQA 56
++E+KYDGERVQVHK NEF +FSR++KPVL HK + E F +A
Sbjct: 227 FAEVKYDGERVQVHKNNNEFAFFSRNMKPVLSHKVDYLKEYIPKAFKKA 275
>sp|O57250|DNLI_VACCA DNA ligase OS=Vaccinia virus (strain Ankara) GN=LIG PE=3 SV=1
Length = 552
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 41 KAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFK 94
K +WEISGAEF+ ++ HTA+GISIRFPR T+IR+DK WK +T+L +L L K
Sbjct: 498 KQSQIWEISGAEFTSSKSHTANGISIRFPRFTRIREDKTWKESTHLNDLVNLTK 551
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQA 56
++E+KYDGERVQVHK NEF +FSR++KPVL HK + E F +A
Sbjct: 227 FAEVKYDGERVQVHKNNNEFAFFSRNMKPVLSHKVDYLKEYIPKAFKKA 275
>sp|P16272|DNLI_VACCW DNA ligase OS=Vaccinia virus (strain Western Reserve) GN=LIG PE=1
SV=1
Length = 552
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 41 KAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFK 94
K +WEISGAEF+ ++ HTA+GISIRFPR T+IR+DK WK +T+L +L L K
Sbjct: 498 KQSQIWEISGAEFTSSKSHTANGISIRFPRFTRIREDKTWKESTHLNDLVNLTK 551
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQA 56
++E+KYDGERVQVHK NEF +FSR++KPVL HK + E F +A
Sbjct: 227 FAEVKYDGERVQVHKNNNEFAFFSRNMKPVLSHKVDYLKEYIPKAFKKA 275
>sp|Q67480|DNLI_FOWPN DNA ligase OS=Fowlpox virus (strain NVSL) GN=LIG PE=3 SV=2
Length = 564
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 41/53 (77%)
Query: 44 PVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKS 96
PVWEI G+EF+++ HTA ISIRFPR ++IR+DK ++TA NL ++K L+ S
Sbjct: 506 PVWEIIGSEFTRSSTHTASNISIRFPRCSRIREDKTYETANNLNDIKQLYAVS 558
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 32/54 (59%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADG 63
E KYDGER+Q+HK FKYFSRSLKP+ HK E+ F A+ DG
Sbjct: 234 EFKYDGERIQIHKHDKNFKYFSRSLKPITPHKVTDFEELLDRAFPSAKNMILDG 287
>sp|Q9YMV2|DNLI_NPVLD DNA ligase OS=Lymantria dispar multicapsid nuclear polyhedrosis
virus GN=LIG PE=1 SV=1
Length = 548
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 5 ERCYSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHK 41
E +E+KYDGERVQVHK G+ FK+FSR+LKPV EHK
Sbjct: 191 EGALAEVKYDGERVQVHKAGSRFKFFSRTLKPVPEHK 227
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 44 PVWEISGAEFSQAEI--HTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKSKETSD 101
PVWEI+ +E +A I HTA G+++RFPRV + R DKDW TAT+L E + L + S+E +
Sbjct: 469 PVWEIACSEM-KANIGAHTA-GVTMRFPRVKRFRPDKDWSTATDLQEAEQLIRNSQENTK 526
Query: 102 FTL 104
T
Sbjct: 527 KTF 529
>sp|Q54QM4|DNLI3_DICDI DNA ligase 3 OS=Dictyostelium discoideum GN=lig3 PE=3 SV=1
Length = 1175
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 1 MAKNERC-YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPV 45
+ K+ C Y+EIKYDGER+Q+HK GN+F +SR+LKP++ K V
Sbjct: 271 VVKSSECFYAEIKYDGERIQIHKDGNQFSCYSRNLKPLMPWKVDEV 316
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 41 KAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPEL 89
K ++EI AEF++++ HT G S+RFPR+ KIR DKD+KTAT L EL
Sbjct: 554 KQAMIFEIESAEFTKSDHHTT-GYSMRFPRILKIRHDKDYKTATTLEEL 601
>sp|Q869E1|DNLI1_DICDI DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1
Length = 1192
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 20 VHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTA--------DGISIRFPRV 71
+++ N+F+ FS S+KP + VWE+ A+ S + +HTA GI++RFPR
Sbjct: 1093 INQPRNQFR-FSDSIKPDVWFSPSCVWEVLAADLSISPVHTAASGILDPNKGIALRFPRF 1151
Query: 72 TKIRDDKDWKTATNLPELKVLFKKSKETS 100
+IR DK + AT+ ++ +++ K S
Sbjct: 1152 IRIRPDKSPEDATSSDQVVDMYQNQKINS 1180
>sp|Q9W1H4|DNLI1_DROME DNA ligase 1 OS=Drosophila melanogaster GN=DNA-ligI PE=1 SV=2
Length = 747
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 30 FSRSLKPVLEHKAQPV--WEISGAEFSQAEIHTAD--------GISIRFPRVTKIRDDKD 79
+ SL+P +H +PV WE+ A+ S + IH A GIS+RFPR +IRDDK+
Sbjct: 653 YDPSLEP--DHWFEPVQVWEVKCADLSLSPIHRAAIGIVDGERGISLRFPRFIRIRDDKN 710
Query: 80 WKTATNLPELKVLFK 94
+ AT+ ++ +++
Sbjct: 711 SENATDANQVAHMYQ 725
>sp|O67398|DNLI_AQUAE Probable DNA ligase OS=Aquifex aeolicus (strain VF5) GN=lig PE=3
SV=2
Length = 584
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 6 RCYSEIKYDGERVQVHKKGNEFKYFSRSLKPV 37
+C +E KYDGER+Q H+KG+EF FSR L+ +
Sbjct: 244 KCGAEYKYDGERIQAHRKGDEFYLFSRRLENI 275
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 45 VWEISGAEFSQAEIHTAD--------GISIRFPRVT-KIRDDKDWKTATNLPELKVLFKK 95
V EI+GAE + + +HT GI +RFPR T + R DK + AT E+ +++
Sbjct: 517 VLEITGAELTLSPVHTCGWGKVSPNRGIGLRFPRFTGRYRFDKRPEDATTEQEIIEMYRM 576
Query: 96 SK 97
+
Sbjct: 577 QR 578
>sp|Q42572|DNLI1_ARATH DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2
Length = 790
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 17 RVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTAD--------GISIRF 68
R QV ++ SL P + + VWE+ A+ + + +H A GIS+RF
Sbjct: 689 RSQVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGISLRF 748
Query: 69 PRVTKIRDDKDWKTATNLPELKVLFKKSK 97
PR+ ++R+DK + AT+ ++ L++ K
Sbjct: 749 PRLLRVREDKKPEEATSSEQIADLYQAQK 777
>sp|P51892|DNLI1_XENLA DNA ligase 1 OS=Xenopus laevis GN=lig1 PE=2 SV=1
Length = 1070
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 8/62 (12%)
Query: 45 VWEISGAEFSQAEIHTA--------DGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKS 96
VWE+ A+ S + +H A GIS+RFPR +IRDDK + +TN ++ L++K
Sbjct: 994 VWEVKCADLSISPVHKAALGLVEDQKGISLRFPRFLRIRDDKKPEESTNSFQVADLYRKQ 1053
Query: 97 KE 98
++
Sbjct: 1054 QQ 1055
>sp|A1RY72|DNLI2_THEPD DNA ligase 2 OS=Thermofilum pendens (strain Hrk 5) GN=lig2 PE=3
SV=1
Length = 601
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 6 RCYSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEH 40
+C +E KYDGERVQ HK G++ FSR L+ + H
Sbjct: 259 KCLAEYKYDGERVQAHKSGDKVLLFSRRLENITHH 293
>sp|Q9YD18|DNLI_AERPE DNA ligase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 /
JCM 9820 / NBRC 100138 / K1) GN=lig PE=3 SV=2
Length = 602
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 16/76 (21%)
Query: 36 PVLEHKAQP-VW-------EISGAEFSQAEIHT--------ADGISIRFPRVTKIRDDKD 79
P +E + +P VW EI GAE + + +HT GISIRFPR + RDDK
Sbjct: 515 PRVESRIEPDVWVEPALVAEILGAELTLSPMHTCCLNTVRPGVGISIRFPRFIRWRDDKS 574
Query: 80 WKTATNLPELKVLFKK 95
+ AT EL ++K+
Sbjct: 575 PEDATTTHELLEMYKR 590
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 6 RCYSEIKYDGERVQVHKKGNEFKYFSRSLKPV 37
R E KYDGER Q+HKK E +SR L+ +
Sbjct: 258 RAVVEYKYDGERAQIHKKDGEVYIYSRRLENI 289
>sp|Q6L195|DNLI_PICTO DNA ligase OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 /
JCM 10055 / NBRC 100828) GN=lig PE=3 SV=2
Length = 585
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 12/77 (15%)
Query: 33 SLKPVLEHKAQP--VWEISGAEFSQAEIHT--------ADGISIRFPRVTKIRDDKDWKT 82
S++P +H P V EI GAE + + +HT G+++RFPR+ K RDDK +
Sbjct: 507 SMEP--DHWIYPSLVLEIRGAEITVSPVHTCAMNIIEKGSGLALRFPRLIKPRDDKKPED 564
Query: 83 ATNLPELKVLFKKSKET 99
AT E+ ++K K+
Sbjct: 565 ATTTNEIIEMYKAQKKV 581
>sp|B1L3K8|DNLI1_KORCO DNA ligase 1 OS=Korarchaeum cryptofilum (strain OPF8) GN=lig1 PE=3
SV=1
Length = 541
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 6 RCYSEIKYDGERVQVHKKGNEFKYFSRSLKPV 37
RC E K DG RVQVHK+G+E ++FSR + +
Sbjct: 230 RCALEYKLDGVRVQVHKRGDEVRFFSRRMSDI 261
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 63 GISIRFPRVTKIRDDKDWKTATNLPELKVLFKK 95
G ++RF R+T+IRDDK + A + ++ +++K
Sbjct: 502 GFALRFARITRIRDDKSPEEADTIERVREIYEK 534
>sp|P12000|DNLI1_SCHPO DNA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cdc17 PE=3 SV=1
Length = 768
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 45 VWEISGAEFSQAEIHTA--------DGISIRFPRVTKIRDDKDWKTATNLPELKVLFK 94
+WE+ A+ S + ++ A GIS+RFPR +IR+DK W+ AT ++ ++
Sbjct: 692 LWEVLAADLSLSPVYKAAIGYVQEDKGISLRFPRFIRIREDKSWEDATTSEQVSEFYR 749
>sp|P18858|DNLI1_HUMAN DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1
Length = 919
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 45 VWEISGAEFSQAEIHTAD--------GISIRFPRVTKIRDDKDWKTATNLPELKVLFKKS 96
VWE+ A+ S + I+ A GIS+RFPR ++R+DK + AT ++ L++K
Sbjct: 841 VWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQ 900
Query: 97 KE 98
+
Sbjct: 901 SQ 902
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 10 EIKYDGERVQVHK-KGNEFKYFSRS 33
E KYDG+R Q+H +G E K FSR+
Sbjct: 566 EYKYDGQRAQIHALEGGEVKIFSRN 590
>sp|C0QSL7|DNLI_PERMH Probable DNA ligase OS=Persephonella marina (strain DSM 14350 /
EX-H1) GN=lig PE=3 SV=1
Length = 582
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 9 SEIKYDGERVQVHKKGNEFKYFSRSLKPVLEH 40
+E KYDGER+QVH+KG+ F FSR L+ + +
Sbjct: 247 AEYKYDGERIQVHRKGDTFYLFSRRLENITDQ 278
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 45 VWEISGAEFSQAEIHTAD--------GISIRFPRVT-KIRDDKDWKTATNLPELKVLFK 94
V EI+GAE + + +HT G+ +RFPR T + R DK + AT E+ ++K
Sbjct: 517 VLEITGAELTLSPVHTCGWDRIKINRGLGLRFPRFTGRYRFDKRPEDATTEEEIINMYK 575
>sp|Q8TSR7|DNLI1_METAC DNA ligase 1 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=lig1 PE=3 SV=1
Length = 580
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 9 SEIKYDGERVQVHKKGNEFKYFSRSLKPV 37
+E KYDGERVQ+HK G+E K FSR L+ +
Sbjct: 244 AEEKYDGERVQIHKAGDEIKAFSRRLEDI 272
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 45 VWEISGAEFSQAEIHTAD------GISIRFPRVTKIRDDKDWKTATNLPELKVL 92
V E+ G+E + + HTA G+++RFPR +IR D+ AT + E++ L
Sbjct: 523 VIEVLGSEITNSPGHTAGEGEEETGLALRFPRFLRIRYDRAPFDATTVREIRDL 576
>sp|Q8BTF7|DNLI4_MOUSE DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=2
Length = 911
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 21 HKKGNEFKYFSRSLKP--VLEHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDK 78
HKK + KP +E + + +I AE ++++ G ++RFPR+ KIRDDK
Sbjct: 530 HKKSPPSSILCGTEKPEVYIEPQNSVIVQIKAAEIVPSDMYKT-GSTLRFPRIEKIRDDK 588
Query: 79 DWKTATNLPELKVLFKKS 96
+W L +L+ L K+
Sbjct: 589 EWHECMTLGDLEQLRGKA 606
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 3 KNERCYSEIKYDGERVQVHKKGNEFKYFSRS 33
K + Y E K DGER+Q+HK G ++YFSR+
Sbjct: 264 KQQSFYIETKLDGERMQMHKDGALYRYFSRN 294
>sp|Q4JAM1|DNLI_SULAC DNA ligase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=lig PE=3
SV=1
Length = 598
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 20/108 (18%)
Query: 14 DGERVQVHKKGNEFKYFSRSLKPVLEHKAQP-VW-------EISGAEFSQAEIHTA---- 61
D E +V K +E K + P +E + QP +W EI GAE + + +HT
Sbjct: 491 DAELEEVQKMLSEAKLDKKD--PRVESEIQPDIWVKPKYVAEIIGAEITLSPLHTCCKGV 548
Query: 62 ----DGISIRFPRVTKIRDDKDWKTATNLPELKVLFKK--SKETSDFT 103
G+SIRFPR + RDDK + AT E+ +++ K+ D T
Sbjct: 549 VSEEAGLSIRFPRFIRWRDDKSVEEATTPNEILEMYQSRLKKKVEDIT 596
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 12 KYDGERVQVHKKGNEFKYFSRSLKPV 37
KYDGER Q+HKKG + FSR L+ +
Sbjct: 260 KYDGERAQIHKKGEKVYIFSRRLENI 285
>sp|Q46C04|DNLI1_METBF DNA ligase 1 OS=Methanosarcina barkeri (strain Fusaro / DSM 804)
GN=lig1 PE=3 SV=1
Length = 549
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 9 SEIKYDGERVQVHKKGNEFKYFSRSLKPV 37
+E KYDGERVQ+HK G E K FSR L+ +
Sbjct: 211 AEEKYDGERVQIHKNGEEIKAFSRRLEDI 239
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 45 VWEISGAEFSQAEIHTAD------GISIRFPRVTKIRDDKDWKTATNLPELKVL 92
V E+ G+E +++ HTA G+++RFPR +IR DK T L E++ L
Sbjct: 490 VIEVLGSEITESPSHTAGQGEGDTGLALRFPRFLRIRHDKGPYDITTLTEVRNL 543
>sp|A1RTK4|DNLI_PYRIL DNA ligase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)
GN=lig PE=3 SV=1
Length = 584
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 9 SEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHT-------- 60
+++K E +Q +K + ++P + Q V E+ GAE + + +HT
Sbjct: 481 ADLKKMYEMLQPYKIPHRHPRVVSKMEPDVWFTPQVVIEVIGAEITLSPLHTCCLGAVKP 540
Query: 61 ADGISIRFPRVT-KIRDDKDWKTATNLPELKVLFKKSKETS 100
G++IRFPR T + R DK + AT + E+ L+K+ K+ +
Sbjct: 541 GVGLAIRFPRFTGRYRTDKSPEQATTVSEMIELYKRQKKVA 581
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPV 37
E KYDGER Q+H K K FSR L+ +
Sbjct: 249 EYKYDGERAQIHLKEGVVKIFSRRLEDI 276
>sp|A2BJX6|DNLI_HYPBU DNA ligase OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
GN=lig PE=3 SV=1
Length = 608
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 34 LKPVLEHKAQPVWEISGAEFSQAEIHT--------ADGISIRFPRVTKIRDDKDWKTATN 85
+KP + + V EI GAE + + IHT GISIRFPR + R DK + AT
Sbjct: 525 MKPDVWVEPTLVAEIIGAELTLSPIHTCCYGWVKSGAGISIRFPRFIRWRPDKGPEDATT 584
Query: 86 LPELKVLFKK 95
EL ++K+
Sbjct: 585 TKELYEMYKR 594
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 6 RCYSEIKYDGERVQVHKKGNEFKYFSRSLKPV 37
R E KYDGER Q+HKKG++ FSR L+ +
Sbjct: 262 RALVEYKYDGERAQIHKKGDKIWIFSRRLENI 293
>sp|Q5R6L3|DNLI4_PONAB DNA ligase 4 OS=Pongo abelii GN=DNL4 PE=2 SV=1
Length = 911
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 21 HKKGNEFKYFSRSLKP--VLEHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDK 78
HKK + KP +E + +I AE ++++ G ++RFPR+ KIRDDK
Sbjct: 530 HKKAPPSSILCGTEKPEVYIEPCNSVIVQIKAAEIVPSDMYKT-GCTLRFPRIEKIRDDK 588
Query: 79 DWKTATNLPELKVLFKKS 96
+W L +L+ L K+
Sbjct: 589 EWHECMTLDDLEQLRGKA 606
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 3 KNERCYSEIKYDGERVQVHKKGNEFKYFSRS 33
K++ Y E K DGER+Q+HK G+ +KYFSR+
Sbjct: 264 KHQSFYIETKLDGERMQMHKDGDVYKYFSRN 294
>sp|P49917|DNLI4_HUMAN DNA ligase 4 OS=Homo sapiens GN=LIG4 PE=1 SV=2
Length = 911
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 45 VWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKS 96
+ +I AE ++++ G ++RFPR+ KIRDDK+W L +L+ L K+
Sbjct: 556 IVQIKAAEIVPSDMYKT-GCTLRFPRIEKIRDDKEWHECMTLDDLEQLRGKA 606
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 3 KNERCYSEIKYDGERVQVHKKGNEFKYFSRS 33
K++ Y E K DGER+Q+HK G+ +KYFSR+
Sbjct: 264 KHQSFYIETKLDGERMQMHKDGDVYKYFSRN 294
>sp|Q90YB1|DNLI4_CHICK DNA ligase 4 OS=Gallus gallus GN=LIG4 PE=2 SV=2
Length = 912
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 4 NERCYSEIKYDGERVQVHKKGNEFKYFSRS 33
N+ Y E K DGER+Q+HK G+ +KYFSR+
Sbjct: 270 NQVFYIETKLDGERMQMHKDGDVYKYFSRN 299
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 45 VWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVL 92
+ +I AE ++++ D ++RFPR+ KIR+DK+W L L+ L
Sbjct: 561 IVQIKAAEIVNSDMYKTD-CTLRFPRIEKIREDKEWYECMTLDMLEHL 607
>sp|A6UNY0|DNLI_METVS DNA ligase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM
1224) GN=lig PE=3 SV=1
Length = 573
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQA 56
E KYDG RVQVHK E K +SR L+ + + V EI E
Sbjct: 250 ETKYDGARVQVHKSNGEVKIYSRRLEDITNSVPELVLEIKNLEVDNV 296
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 19 QVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDK 78
++ K NE K + +LE K V E++ E +E + G ++RFPRV IR+DK
Sbjct: 495 KLTKIANEIKIEDLGGEVILEPKI--VLEVTYEEIQTSEKYEM-GYALRFPRVVGIREDK 551
Query: 79 DWKTATNLPELKVLFK 94
+L ++K +++
Sbjct: 552 SINDINSLDDVKKIYE 567
>sp|Q9C1W9|DNLI3_SCHPO DNA ligase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=adl1 PE=3 SV=1
Length = 774
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 34 LKPVLEHKAQPVWEISGAEFSQAEIHTAD--------GISIRFPRVTKIRDDKDWKTATN 85
+ P + Q VWEI GA+ + + + A G+SIRFPR ++R DK + A+
Sbjct: 701 VTPQIYFAPQEVWEIKGAQITSSPAYKAALGLIQDDRGLSIRFPRFIRVRSDKGPEDAST 760
Query: 86 LPELKVLFKKSKET 99
L ++ K T
Sbjct: 761 NSILADMYMKQLNT 774
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 10 EIKYDGERVQVH--KKGNEFKYFSRSLKPV 37
E KYDG+R Q+H + GN K FSR L+ +
Sbjct: 431 EFKYDGQRAQIHCDRLGN-IKIFSRHLEEI 459
>sp|C3MYD2|DNLI_SULIM DNA ligase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1)
GN=lig PE=3 SV=1
Length = 601
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 42 AQPVW--EISGAEFSQAEIHTA--------DGISIRFPRVTKIRDDKDWKTATNLPELKV 91
+PV+ EI GAE + + +HT G+SIRFPR + RDDK + AT E+
Sbjct: 523 VEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILE 582
Query: 92 LFKK 95
++ K
Sbjct: 583 MYNK 586
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 12 KYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEIS----GAEF-SQAEIHTAD 62
KYDGER Q+HKK ++ FSR L+ + V IS G EF + EI D
Sbjct: 260 KYDGERAQIHKKDDKIFIFSRRLENITSQYPDVVEYISKYTEGKEFIIEGEIVAVD 315
>sp|C3MJ14|DNLI_SULIL DNA ligase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1)
GN=lig PE=3 SV=1
Length = 601
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 42 AQPVW--EISGAEFSQAEIHTA--------DGISIRFPRVTKIRDDKDWKTATNLPELKV 91
+PV+ EI GAE + + +HT G+SIRFPR + RDDK + AT E+
Sbjct: 523 VEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILE 582
Query: 92 LFKK 95
++ K
Sbjct: 583 MYNK 586
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 12 KYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEIS----GAEF-SQAEIHTAD 62
KYDGER Q+HKK ++ FSR L+ + V IS G EF + EI D
Sbjct: 260 KYDGERAQIHKKDDKIFIFSRRLENITSQYPDVVEYISKYTEGKEFIIEGEIVAVD 315
>sp|C4KIZ2|DNLI_SULIK DNA ligase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3)
GN=lig PE=3 SV=1
Length = 601
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 42 AQPVW--EISGAEFSQAEIHTA--------DGISIRFPRVTKIRDDKDWKTATNLPELKV 91
+PV+ EI GAE + + +HT G+SIRFPR + RDDK + AT E+
Sbjct: 523 VEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILE 582
Query: 92 LFKK 95
++ K
Sbjct: 583 MYNK 586
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 12 KYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEIS----GAEF-SQAEIHTAD 62
KYDGER Q+HKK ++ FSR L+ + V IS G EF + EI D
Sbjct: 260 KYDGERAQIHKKDDKIFIFSRRLENITSQYPDVVEYISKYTEGKEFIIEGEIVAVD 315
>sp|C3MZR1|DNLI_SULIA DNA ligase OS=Sulfolobus islandicus (strain M.16.27) GN=lig PE=3
SV=1
Length = 601
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 42 AQPVW--EISGAEFSQAEIHTA--------DGISIRFPRVTKIRDDKDWKTATNLPELKV 91
+PV+ EI GAE + + +HT G+SIRFPR + RDDK + AT E+
Sbjct: 523 VEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILE 582
Query: 92 LFKK 95
++ K
Sbjct: 583 MYNK 586
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 12 KYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEIS----GAEF-SQAEIHTAD 62
KYDGER Q+HKK ++ FSR L+ + V IS G EF + EI D
Sbjct: 260 KYDGERAQIHKKDDKIFIFSRRLENITSQYPDVVEYISKYTEGKEFIIEGEIVAVD 315
>sp|C3N834|DNLI_SULIY DNA ligase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone
#1) GN=lig PE=3 SV=1
Length = 601
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 42 AQPVW--EISGAEFSQAEIHTA--------DGISIRFPRVTKIRDDKDWKTATNLPELKV 91
+PV+ EI GAE + + +HT G+SIRFPR + RDDK + AT E+
Sbjct: 523 VEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILE 582
Query: 92 LFKK 95
++ K
Sbjct: 583 MYNK 586
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 12 KYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEIS----GAEF-SQAEIHTAD 62
KYDGER Q+HKK ++ FSR L+ + V IS G EF + EI D
Sbjct: 260 KYDGERAQIHKKDDKIFIFSRRLENITSQYPDVVEYISKYTEGKEFIIEGEIVAVD 315
>sp|C3NF77|DNLI_SULIN DNA ligase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone
#2) GN=lig PE=3 SV=1
Length = 601
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 42 AQPVW--EISGAEFSQAEIHTA--------DGISIRFPRVTKIRDDKDWKTATNLPELKV 91
+PV+ EI GAE + + +HT G+SIRFPR + RDDK + AT E+
Sbjct: 523 VEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILE 582
Query: 92 LFKK 95
++ K
Sbjct: 583 MYNK 586
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 12 KYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEIS----GAEF-SQAEIHTAD 62
KYDGER Q+HKK ++ FSR L+ + V IS G EF + EI D
Sbjct: 260 KYDGERAQIHKKDDKIFIFSRRLENITSQYPDVVEYISKYTEGKEFIIEGEIVAVD 315
>sp|Q9P9K9|DNLI_SULSH DNA ligase OS=Sulfolobus shibatae GN=lig PE=3 SV=1
Length = 601
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 43 QPVW--EISGAEFSQAEIHTA--------DGISIRFPRVTKIRDDKDWKTATNLPELKVL 92
+PV+ EI GAE + + +HT G+SIRFPR + RDDK + AT E+ +
Sbjct: 524 EPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEM 583
Query: 93 FKK 95
+ K
Sbjct: 584 YNK 586
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 12 KYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEIS----GAEF-SQAEIHTAD 62
KYDGER Q+HKK ++ FSR L+ + V IS G EF + EI D
Sbjct: 260 KYDGERAQIHKKSDKIFIFSRRLENITSQYPDVVEYISKYVEGKEFIIEGEIVAVD 315
>sp|A4YD25|DNLI_METS5 DNA ligase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348)
GN=lig PE=3 SV=1
Length = 598
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 45 VWEISGAEFSQAEIHTA-----DGISIRFPRVTKIRDDKDWKTATNLPELKVLFKK 95
V E+ GAE + + +HT G+SIRFPR + RDDK + AT E+ ++ K
Sbjct: 529 VAEVIGAEITISPLHTCCRGEKGGLSIRFPRFIRWRDDKSPEDATTNQEIMEMYSK 584
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 4 NERCYSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEH 40
N + + KYDGER Q+H+KG++ FSR ++ + +
Sbjct: 253 NGKALVDYKYDGERAQIHRKGDKVTIFSRRMENITDQ 289
>sp|Q979A1|DNLI_THEVO DNA ligase OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299
/ JCM 9571 / NBRC 15438 / GSS1) GN=lig PE=3 SV=1
Length = 588
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 9/64 (14%)
Query: 45 VWEISGAEFSQAEIHTAD--------GISIRFPRVT-KIRDDKDWKTATNLPELKVLFKK 95
V EI GAE + + +HT G+SIRFPR T K RDDK + +T E+ ++K+
Sbjct: 519 VMEIIGAEITISPVHTCAFGIIEKDAGLSIRFPRFTGKWRDDKKPEDSTTTQEIIEMYKE 578
Query: 96 SKET 99
K+T
Sbjct: 579 QKKT 582
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 4 NERCYSEIKYDGERVQVHKKGNEFKYFSRS 33
N +C E KYDG R ++H + + FSR
Sbjct: 242 NGKCAFEYKYDGMRTEIHIVDEKVRLFSRG 271
>sp|P37913|DNLI1_MOUSE DNA ligase 1 OS=Mus musculus GN=Lig1 PE=1 SV=2
Length = 916
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 45 VWEISGAEFSQAEIHTA--------DGISIRFPRVTKIRDDKDWKTATNLPELKVLFKK 95
VWE+ A+ S + I+ A GIS+RFPR ++R DK + AT ++ L++K
Sbjct: 839 VWEVKCADLSLSPIYPAARGLVDKEKGISLRFPRFIRVRKDKQPEQATTSNQVASLYRK 897
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 10 EIKYDGERVQVHK-KGNEFKYFSRS 33
E KYDG+R Q+H +G E K FSR+
Sbjct: 564 EYKYDGQRAQIHVLEGGEVKIFSRN 588
>sp|Q57635|DNLI_METJA DNA ligase OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=lig PE=3
SV=1
Length = 573
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 6 RCYSEIKYDGERVQVHKKGNEFKYFSRSLKPV 37
R E KYDG RVQ+HK GN+ K +SR L+ V
Sbjct: 244 RAQFETKYDGARVQIHKDGNKVKIYSRRLEDV 275
>sp|Q9JHY8|DNLI1_RAT DNA ligase 1 OS=Rattus norvegicus GN=Lig1 PE=2 SV=1
Length = 918
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 45 VWEISGAEFSQAEIHTA--------DGISIRFPRVTKIRDDKDWKTATNLPELKVLFKK 95
VWE+ A+ + + I+ A GIS+RFPR ++R+DK + AT ++ L++K
Sbjct: 841 VWEVKCADLTLSPIYRAARGMVDKEKGISLRFPRFIRVREDKQPEQATTSDQVASLYRK 899
>sp|Q7X7E9|DNLI4_ORYSJ Putative DNA ligase 4 OS=Oryza sativa subsp. japonica GN=LIG4 PE=2
SV=2
Length = 1322
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Query: 9 SEIKYDGERVQVHKKGNEFKYFSRSLKPVLEH 40
+E K+DG+R+Q+HK G E +FSRS L+H
Sbjct: 264 AECKFDGDRIQIHKNGEEIHFFSRSF---LDH 292
>sp|A3DP49|DNLI_STAMF DNA ligase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1) GN=lig PE=3 SV=2
Length = 597
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 45 VWEISGAEFSQAEIHT--------ADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKK 95
V EI GAE + + +HT GISIRFPR + R DK + AT EL ++K+
Sbjct: 532 VAEIIGAELTLSPLHTCCLDIIKPGVGISIRFPRFIRWRPDKGPEDATTSQELLEMYKR 590
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 7 CYSEIKYDGERVQVHKKGNEFKYFSRSLKPV 37
+ E KYDGER Q+HK G++ +SR L+ +
Sbjct: 259 AFVEYKYDGERAQIHKLGDKIWIYSRRLENI 289
>sp|B1YA52|DNLI_PYRNV DNA ligase OS=Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278
/ V24Sta) GN=lig PE=3 SV=1
Length = 584
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 9 SEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHT-------- 60
+++K E +Q +K + + P + Q V E+ GAE + + +HT
Sbjct: 481 ADLKKMYEVLQPYKIPHRHPRVVSKMTPDVWFTPQVVIEVIGAEITLSPLHTCCLGAVRP 540
Query: 61 ADGISIRFPRVT-KIRDDKDWKTATNLPELKVLFKKSKETS 100
G++IRFPR T + R DK + AT E+ L+K+ K+ +
Sbjct: 541 GVGLAIRFPRFTGRYRTDKSPEQATTPAEMVELYKRQKKVA 581
Score = 35.8 bits (81), Expect = 0.079, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPV 37
E KYDGER Q+H G K FSR L+ +
Sbjct: 249 EYKYDGERAQIHISGGSVKIFSRRLEDI 276
>sp|O93723|DNLI_PYRAE DNA ligase OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM
7523 / JCM 9630 / NBRC 100827) GN=lig PE=3 SV=2
Length = 584
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
Query: 43 QPVWEISGAEFSQAEIHT--------ADGISIRFPRVT-KIRDDKDWKTATNLPELKVLF 93
Q V E+ GAE + + +HT G+++RFPR T + R DK + AT + E+ L+
Sbjct: 515 QVVIEVIGAEITLSPLHTCCLGAVRPGVGLAVRFPRFTGRYRSDKSPEQATTVAEMLELY 574
Query: 94 KKSKE 98
K+ K+
Sbjct: 575 KRQKK 579
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPV 37
E KYDGER Q+H K FSR L+ +
Sbjct: 249 EYKYDGERAQIHLTPGGVKIFSRRLEDI 276
>sp|Q8PVR7|DNLI1_METMA DNA ligase 1 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM
3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=lig1 PE=3
SV=1
Length = 579
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 9 SEIKYDGERVQVHKKGNEFKYFSRSLKPV 37
+E KYDGERVQVHK G K FSR L+ +
Sbjct: 243 AEEKYDGERVQVHKTGEGIKAFSRRLEDI 271
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 45 VWEISGAEFSQAEIHTAD------GISIRFPRVTKIRDDKDWKTATNLPELKVL 92
V E+ G+E + + HTA G+++RFPR +IR DK A + E++ L
Sbjct: 522 VIEVLGSEITNSPGHTAGEGEEETGLALRFPRFLRIRHDKTPYDAMTVKEVRDL 575
>sp|Q3IPX0|DNLI_NATPD DNA ligase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678)
GN=lig PE=3 SV=1
Length = 548
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPVLE 39
E KYDG RVQVH G+ + FSR+L+ V E
Sbjct: 252 ETKYDGARVQVHYDGDSARLFSRNLEEVTE 281
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,198,008
Number of Sequences: 539616
Number of extensions: 1619149
Number of successful extensions: 5117
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 4814
Number of HSP's gapped (non-prelim): 300
length of query: 124
length of database: 191,569,459
effective HSP length: 91
effective length of query: 33
effective length of database: 142,464,403
effective search space: 4701325299
effective search space used: 4701325299
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)