Query psy14581
Match_columns 124
No_of_seqs 130 out of 824
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 23:30:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l2p_A DNA ligase 3; DNA ligas 99.6 1.5E-16 5.3E-21 137.0 3.8 66 32-97 511-579 (579)
2 1x9n_A DNA ligase I; 5'-adenyl 99.5 1.4E-14 4.7E-19 127.0 6.2 72 30-101 595-674 (688)
3 3gde_A DNA ligase; DNA-binding 99.5 1.2E-14 4.1E-19 124.7 5.5 63 35-98 492-554 (558)
4 2hiv_A Thermostable DNA ligase 99.5 1.9E-14 6.3E-19 124.8 6.0 68 33-100 536-611 (621)
5 2cfm_A Thermostable DNA ligase 99.4 7.8E-14 2.7E-18 119.5 4.7 63 35-98 492-554 (561)
6 3vnn_A DNA ligase 4; non-homol 99.1 2.6E-11 9E-16 87.1 4.0 62 7-69 1-69 (139)
7 1vs0_A Putative DNA ligase-lik 98.6 6.5E-08 2.2E-12 77.2 5.4 63 4-69 24-86 (310)
8 3gde_A DNA ligase; DNA-binding 98.6 3.3E-08 1.1E-12 84.8 3.8 61 5-68 245-305 (558)
9 1vs0_A Putative DNA ligase-lik 98.5 3.5E-08 1.2E-12 78.7 2.5 45 34-85 265-309 (310)
10 1x9n_A DNA ligase I; 5'-adenyl 98.5 9.7E-08 3.3E-12 83.7 5.3 67 2-69 327-395 (688)
11 3l2p_A DNA ligase 3; DNA ligas 98.5 1.5E-07 5.1E-12 81.1 5.9 62 5-69 247-311 (579)
12 2hiv_A Thermostable DNA ligase 98.5 1E-07 3.4E-12 82.7 4.6 63 5-69 273-335 (621)
13 2cfm_A Thermostable DNA ligase 98.4 1.5E-07 5E-12 80.7 4.5 63 5-69 242-304 (561)
14 1a0i_A DNA ligase; DNA replica 98.3 4.7E-07 1.6E-11 72.9 3.9 64 5-68 26-96 (348)
15 1ckm_A MRNA capping enzyme; nu 97.5 0.00011 3.8E-09 59.1 5.6 40 5-44 75-118 (330)
16 1p16_A GTP--RNA, mRNA capping 97.4 0.00013 4.4E-09 59.9 4.0 63 4-68 59-130 (395)
17 3rtx_A MRNA-capping enzyme; gu 96.8 0.00092 3.2E-08 54.2 4.3 41 4-44 62-106 (343)
18 1fvi_A Chlorella virus DNA lig 96.8 0.00063 2.2E-08 53.7 3.0 31 4-39 18-48 (297)
19 1a0i_A DNA ligase; DNA replica 96.8 0.00045 1.5E-08 55.4 2.0 36 33-75 311-348 (348)
20 1fvi_A Chlorella virus DNA lig 95.4 0.0035 1.2E-07 49.4 0.7 31 43-80 267-297 (297)
21 3kyh_C MRNA-capping enzyme sub 94.0 0.072 2.5E-06 44.9 5.3 37 2-38 62-104 (461)
22 2vug_A PAB1020; RNA, ligase, A 93.9 0.062 2.1E-06 44.1 4.7 33 4-36 94-126 (389)
23 1p16_A GTP--RNA, mRNA capping 93.1 0.038 1.3E-06 45.1 2.1 44 42-96 320-364 (395)
24 1ckm_A MRNA capping enzyme; nu 87.5 0.39 1.3E-05 38.3 3.3 26 68-95 288-313 (330)
25 1s68_A RNA ligase 2; ribonucle 85.0 0.99 3.4E-05 34.5 4.3 34 2-35 25-58 (249)
26 2hvq_A ORF1, hypothetical 37.6 80.1 1.9 6.6E-05 34.4 4.4 34 2-35 26-59 (335)
27 3qwu_A DNA ligase; structural 70.7 5.2 0.00018 32.7 4.6 33 4-36 72-104 (370)
28 1ta8_A DNA ligase, NAD-depende 56.1 10 0.00035 30.4 3.7 34 6-39 114-152 (332)
29 4glw_A DNA ligase; inhibitor, 50.7 19 0.00064 28.3 4.4 37 3-39 100-141 (305)
30 1b04_A Protein (DNA ligase); D 50.4 16 0.00055 29.1 4.0 34 6-39 108-146 (318)
31 3prb_A FKBP-type peptidyl-prol 43.4 12 0.00041 28.4 2.1 59 43-108 116-178 (231)
32 2kr7_A FKBP-type peptidyl-prol 35.5 12 0.00039 26.2 0.9 34 43-76 112-146 (151)
33 1zau_A DNA ligase; AMP; HET: D 33.8 17 0.0006 29.0 1.8 35 5-39 116-155 (328)
34 3cgm_A SLYD, peptidyl-prolyl C 31.1 15 0.00053 25.9 0.9 34 43-76 103-137 (158)
35 4dt4_A FKBP-type 16 kDa peptid 30.8 15 0.00051 26.5 0.8 34 42-75 130-164 (169)
36 1ix5_A FKBP; ppiase, isomerase 27.7 20 0.00068 25.0 1.0 33 43-75 117-150 (151)
37 2kfw_A FKBP-type peptidyl-prol 26.2 17 0.00057 26.8 0.4 34 43-76 107-141 (196)
38 2c5u_A RNA ligase, T4 RNA liga 25.8 80 0.0027 25.3 4.4 32 4-35 92-123 (375)
39 2k8i_A SLYD, peptidyl-prolyl C 25.7 26 0.00088 25.1 1.4 34 43-76 107-141 (171)
40 3uq8_A DNA ligase; adenylated 24.0 95 0.0033 24.6 4.5 27 6-32 108-135 (322)
41 3jsl_A DNA ligase; NAD+-depend 21.5 1.1E+02 0.0037 24.3 4.3 28 5-32 105-133 (318)
42 1xdn_A RNA editing ligase MP52 20.3 1E+02 0.0035 24.2 3.9 32 3-34 31-66 (277)
43 2jys_A Protease/reverse transc 20.1 47 0.0016 22.4 1.6 36 5-42 58-95 (107)
No 1
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=99.61 E-value=1.5e-16 Score=137.03 Aligned_cols=66 Identities=64% Similarity=1.026 Sum_probs=52.8
Q ss_pred cCccceeec-cc--cccceeccceeccccceeccceEeecccceeeecCCCccccCCHHHHHHHHHHcc
Q psy14581 32 RSLKPVLEH-KA--QPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKSK 97 (124)
Q Consensus 32 Rn~ep~t~~-~P--s~V~EI~~a~~~~s~~~~~~G~~lrFPR~~~iR~DK~~~~a~t~~~l~~l~~~~~ 97 (124)
.+..|++|. .| +.||||++++++.|+.|+++|++||||||.++|+||+|+||+|+++|.+||+.++
T Consensus 511 ~~~~pd~~~~~P~~~~V~Ei~~~~i~~S~~~~~~G~sLRFPR~~riR~DK~~~ea~t~~~l~~l~~~~~ 579 (579)
T 3l2p_A 511 KIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSK 579 (579)
T ss_dssp --------------CEEEEEEESCEEECTTSSSTTEEESSCEECCCCSSCCSSSSCBHHHHHHHHHTCC
T ss_pred CCCCCcEEEecCCCCeEEEEEeeEEeecCCcccCCEEEECCeEEEEeCCCChHHCCCHHHHHHHHhhcC
Confidence 455688774 44 8999999999999999988999999999999999999999999999999998874
No 2
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=99.50 E-value=1.4e-14 Score=126.98 Aligned_cols=72 Identities=31% Similarity=0.545 Sum_probs=62.7
Q ss_pred eecCccceeeccccccceeccceeccccceec--------cceEeecccceeeecCCCccccCCHHHHHHHHHHcccCCC
Q psy14581 30 FSRSLKPVLEHKAQPVWEISGAEFSQAEIHTA--------DGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKSKETSD 101 (124)
Q Consensus 30 fSRn~ep~t~~~Ps~V~EI~~a~~~~s~~~~~--------~G~~lrFPR~~~iR~DK~~~~a~t~~~l~~l~~~~~~~~~ 101 (124)
+.....|++|..|..||||++++++.|+.|++ .|.+||||||.++|.||+|+||+|+++|.+||+.|.....
T Consensus 595 ~~~~~~p~vwv~P~~V~EV~~~e~t~S~~~~~~~g~~~~~~G~sLRfPrf~riR~DK~~~ea~t~~~l~~l~~~q~~~~~ 674 (688)
T 1x9n_A 595 IDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQN 674 (688)
T ss_dssp CSSSCCCSEEECSCCEEEEEESEEEEESSCCTTTTTSCSSCEEEEESCEEEEECTTCCGGGSCBHHHHHHHHHHHC----
T ss_pred cCCCCCCcEEeCCcEEEEEEEEeeeccccccccccccccCCCceEECcEEEEEeCCCChHHCCCHHHHHHHHHHhHhhhc
Confidence 33356789999999999999999999999976 5999999999999999999999999999999998876543
No 3
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=99.50 E-value=1.2e-14 Score=124.73 Aligned_cols=63 Identities=29% Similarity=0.469 Sum_probs=59.0
Q ss_pred cceeeccccccceeccceeccccceeccceEeecccceeeecCCCccccCCHHHHHHHHHHccc
Q psy14581 35 KPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKSKE 98 (124)
Q Consensus 35 ep~t~~~Ps~V~EI~~a~~~~s~~~~~~G~~lrFPR~~~iR~DK~~~~a~t~~~l~~l~~~~~~ 98 (124)
.|++|..|..||||++++++.|+.| .+|.+||||||.++|.||+|+||+|+++|.+||+.|++
T Consensus 492 ~~~vwv~P~lV~EV~~~~~t~s~~~-~~g~~LRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q~~ 554 (558)
T 3gde_A 492 GKKVEFIPKYVFEVAYQEIQKSPKY-ESGYALRFPRFVRLRDDKDVDEADTIERVENLYKLQFE 554 (558)
T ss_dssp TTEEEECSCCEEEEECSEEEECSSS-TTSEEEESCEEEEECTTCCGGGSCBHHHHHHHHHTTC-
T ss_pred CCcEEecCcEEEEEEEeeeecCCcc-CCCCEEECcEEEEEECCCChHHCCCHHHHHHHHHHhHh
Confidence 4789999999999999999999999 57999999999999999999999999999999998853
No 4
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=99.49 E-value=1.9e-14 Score=124.79 Aligned_cols=68 Identities=34% Similarity=0.513 Sum_probs=62.0
Q ss_pred Cccceeeccccccceeccceeccccceec--------cceEeecccceeeecCCCccccCCHHHHHHHHHHcccCC
Q psy14581 33 SLKPVLEHKAQPVWEISGAEFSQAEIHTA--------DGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKSKETS 100 (124)
Q Consensus 33 n~ep~t~~~Ps~V~EI~~a~~~~s~~~~~--------~G~~lrFPR~~~iR~DK~~~~a~t~~~l~~l~~~~~~~~ 100 (124)
...|++|..|..||||++++++.|+.|++ .|++||||||.++|.||+|+||+|+++|.+||+.|.+..
T Consensus 536 ~~~~~vwv~P~~V~EV~~~~~t~s~~~~a~~~~~~~~~G~sLRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q~~~~ 611 (621)
T 2hiv_A 536 KMEPDIWVEPVYVAEIIGSEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQPKKK 611 (621)
T ss_dssp SSCCSEEECSCCEEEEEESEEEEETTCCTTTTTSSTTCEEEEESCEEEEECTTCCGGGSCBHHHHHHHHHHSCCC-
T ss_pred CCCceEEecCceEEEEEEEEEEcCcccccccccccCCCCceEEcCEEEEEeCCCChHHCCCHHHHHHHHHHhhccc
Confidence 35789999999999999999999999964 589999999999999999999999999999999887543
No 5
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=99.42 E-value=7.8e-14 Score=119.54 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=59.6
Q ss_pred cceeeccccccceeccceeccccceeccceEeecccceeeecCCCccccCCHHHHHHHHHHccc
Q psy14581 35 KPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKSKE 98 (124)
Q Consensus 35 ep~t~~~Ps~V~EI~~a~~~~s~~~~~~G~~lrFPR~~~iR~DK~~~~a~t~~~l~~l~~~~~~ 98 (124)
.|++|..|..||||++++++.|+.| ..|.+||||||.++|.||+|+||+|+++|.+||+.|.+
T Consensus 492 ~~~~wv~P~~V~EV~~~~~t~s~~~-~~G~~lRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q~~ 554 (561)
T 2cfm_A 492 GKRVWLQPKVVIEVTYQEIQKSPKY-RSGFALRFPRFVALRDDKGPEDADTIERIAQLYELQEK 554 (561)
T ss_dssp TTEEEECSCCEEEEECSEEECCSSS-TTSCEEESCEEEEECTTSCGGGSCBHHHHHHHHHHHHH
T ss_pred CCeEEeCCceEEEEEEEEEEcCCcc-CCCCEEEccEEEEEeCCCChHHCCCHHHHHHHHHHhhh
Confidence 5889999999999999999999999 58999999999999999999999999999999998754
No 6
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=99.14 E-value=2.6e-11 Score=87.13 Aligned_cols=62 Identities=35% Similarity=0.519 Sum_probs=49.5
Q ss_pred eEEEeeeccceeeEeeeCCeeEEeecCccceeeccccccc------eeccceec-cccceeccceEeecc
Q psy14581 7 CYSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVW------EISGAEFS-QAEIHTADGISIRFP 69 (124)
Q Consensus 7 f~~E~K~DGER~QiH~~~~~~k~fSRn~ep~t~~~Ps~V~------EI~~a~~~-~s~~~~~~G~~lrFP 69 (124)
|++|+||||+|+|+|+.++.+++||||++++|..+|..+- .|..+ +. ..+.+++||+.+.+.
T Consensus 1 f~~E~K~DG~R~q~~~~g~~v~l~SR~g~d~t~~fPel~~~~~l~~~i~~~-~~~~~~~~iLDGEiv~~d 69 (139)
T 3vnn_A 1 FYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNA-FKADIQICILDGEMMAYN 69 (139)
T ss_dssp CCCCCCCCCEEEEEEEETTEEEEECSSCCBCTTTSCSSTTC--CCSGGGSC-CCTTCCEEEEEEEEEEEE
T ss_pred CEEEEEECeEEEEEEEECCEEEEEeCCCCCchhhccchhhhcchhHHHHHH-HhccCCceEeeeEEEEec
Confidence 7899999999999999999999999999999998897552 12222 22 235677899998874
No 7
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=98.56 E-value=6.5e-08 Score=77.16 Aligned_cols=63 Identities=19% Similarity=0.129 Sum_probs=49.9
Q ss_pred CceeEEEeeeccceeeEeeeCCeeEEeecCccceeeccccccceeccceeccccceeccceEeecc
Q psy14581 4 NERCYSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFP 69 (124)
Q Consensus 4 ~~~f~~E~K~DGER~QiH~~~~~~k~fSRn~ep~t~~~Ps~V~EI~~a~~~~s~~~~~~G~~lrFP 69 (124)
++.|++|+||||+|+|+|+.++.+.+|||++++++..+|.+++-.. .+ +...+++||+.+.+.
T Consensus 24 ~~~~~~E~K~DG~R~~~~~~~g~v~l~SR~g~~~t~~fPel~~~~~--~l-~~~~~iLDGElv~~d 86 (310)
T 1vs0_A 24 ASQWAFEGXWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAE--DL-ADHHVVLDGEAVVLD 86 (310)
T ss_dssp TTTEEEEEECCSEEEEEEEETTEEEEEETTCCBCGGGCGGGHHHHH--HT-TTCEEEEEEEEECBC
T ss_pred CCCEEEEEccCcEEEEEEEECCEEEEEcCCCCCchhhchhHHHHHH--hC-CCccEEEeeEEEEEC
Confidence 5689999999999999999999999999999999988887654221 12 123566889888874
No 8
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=98.55 E-value=3.3e-08 Score=84.81 Aligned_cols=61 Identities=33% Similarity=0.374 Sum_probs=48.1
Q ss_pred ceeEEEeeeccceeeEeeeCCeeEEeecCccceeeccccccceeccceeccccceeccceEeec
Q psy14581 5 ERCYSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADGISIRF 68 (124)
Q Consensus 5 ~~f~~E~K~DGER~QiH~~~~~~k~fSRn~ep~t~~~Ps~V~EI~~a~~~~s~~~~~~G~~lrF 68 (124)
+.|++|+||||+|+|+|+.++.+.+|||+++++|..+|.++-.+... +.. .+++||+.+.+
T Consensus 245 ~~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~d~t~~fPel~~~~~~~-l~~--~~iLDGElv~~ 305 (558)
T 3gde_A 245 RTAAVEWKFDGSRVQVHWDGSRVTIYSRRLENVTNALPDIVEEIKKS-VKP--GVILDGEVIAV 305 (558)
T ss_dssp SSEEEEEECSSEEEEEEECSSCCEEEETTCCBCGGGCHHHHHHHHHH-BCS--SEEEEEEEEEE
T ss_pred cceEEEEeEeeEEEEEEEeCCEEEEEcCCCCcccccchHHHHHHHhh-CCC--CeEEEeEEEEc
Confidence 46999999999999999999999999999999998888664333221 221 26688888776
No 9
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=98.50 E-value=3.5e-08 Score=78.69 Aligned_cols=45 Identities=20% Similarity=0.126 Sum_probs=39.5
Q ss_pred ccceeeccccccceeccceeccccceeccceEeecccceeeecCCCccccCC
Q psy14581 34 LKPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATN 85 (124)
Q Consensus 34 ~ep~t~~~Ps~V~EI~~a~~~~s~~~~~~G~~lrFPR~~~iR~DK~~~~a~t 85 (124)
..|++|..|..|+||++++++. +.+||||||.++|.||+|+||+.
T Consensus 265 ~~~~~wv~P~~V~ev~~~~~t~-------~g~lRfP~f~r~R~DK~~~~~~~ 309 (310)
T 1vs0_A 265 AKGITYVKPALVAEVRYSEWTP-------EGRLRQSSWRGLRPDKKPSEVVR 309 (310)
T ss_dssp HTTEEEBCTTCEEEEEESCBCT-------TSCBTTCEEEEECTTSCGGGCCC
T ss_pred CCCCEEEcCCEEEEEEEEEEcC-------CCeEEceEEEEEeCCCCHHHhCC
Confidence 3467999999999999998774 45799999999999999999974
No 10
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=98.49 E-value=9.7e-08 Score=83.74 Aligned_cols=67 Identities=24% Similarity=0.293 Sum_probs=51.1
Q ss_pred CCCceeEEEeeeccceeeEeee-CCeeEEeecCccceeeccccccceeccceec-cccceeccceEeecc
Q psy14581 2 AKNERCYSEIKYDGERVQVHKK-GNEFKYFSRSLKPVLEHKAQPVWEISGAEFS-QAEIHTADGISIRFP 69 (124)
Q Consensus 2 ~~~~~f~~E~K~DGER~QiH~~-~~~~k~fSRn~ep~t~~~Ps~V~EI~~a~~~-~s~~~~~~G~~lrFP 69 (124)
+.+..|++|+||||+|+|+|+. ++.+.+|||++++++..+|.++-.+... +. ..+.+++||+.+.+.
T Consensus 327 ~~~~~~~~E~K~DG~R~qih~~~~g~v~l~SR~g~d~t~~fPel~~~l~~~-~~~~~~~~ILDGElV~~d 395 (688)
T 1x9n_A 327 FEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKI-KLPSVTSFILDTEAVAWD 395 (688)
T ss_dssp TTTSCEEEEEEESSEEEEEEECTTSCEEEECTTSCBCTTTCHHHHHTSGGG-BCTTCCCEEEEEEEEEEC
T ss_pred cCCCeEEEEEccccEeEEEEEcCCCeEEEEeCCCCcccccchHHHHHHHHh-hccCCCCeEEeEEEEEEe
Confidence 3467899999999999999995 5579999999999998788765433322 21 234567899988864
No 11
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=98.48 E-value=1.5e-07 Score=81.15 Aligned_cols=62 Identities=47% Similarity=0.716 Sum_probs=44.8
Q ss_pred ceeEEEeeeccceeeEeeeCCeeEEeecCccceeeccccccceecc---ceeccccceeccceEeecc
Q psy14581 5 ERCYSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISG---AEFSQAEIHTADGISIRFP 69 (124)
Q Consensus 5 ~~f~~E~K~DGER~QiH~~~~~~k~fSRn~ep~t~~~Ps~V~EI~~---a~~~~s~~~~~~G~~lrFP 69 (124)
+.|++|+||||+|+|+|+.++.+.+||||+++.+ |..+-.+.. ..+...+.+++||+.+.+.
T Consensus 247 ~~~~~E~K~DG~R~qih~~g~~v~l~SR~g~~~~---p~~~~~l~~~l~~~~~~~~~~iLDGElv~~d 311 (579)
T 3l2p_A 247 NGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVL---PHKVAHFKDYIPQAFPGGHSMILDSEVLLID 311 (579)
T ss_dssp TCEEEEECCCSEEEEEEEETTEEEEECTTSCBCC---GGGTTTGGGTHHHHSTTCSEEEEEEEEEEBC
T ss_pred CCeEEEEccCcEEEEEEEECCEEEEECCCCCccC---hhHHHHHHHHHHHhcCcCCceEEEeEEEEEe
Confidence 5689999999999999999999999999999873 433222211 1122234567888888764
No 12
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=98.47 E-value=1e-07 Score=82.65 Aligned_cols=63 Identities=27% Similarity=0.375 Sum_probs=49.7
Q ss_pred ceeEEEeeeccceeeEeeeCCeeEEeecCccceeeccccccceeccceeccccceeccceEeecc
Q psy14581 5 ERCYSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFP 69 (124)
Q Consensus 5 ~~f~~E~K~DGER~QiH~~~~~~k~fSRn~ep~t~~~Ps~V~EI~~a~~~~s~~~~~~G~~lrFP 69 (124)
+.|++|+||||+|+|+|+.++.+.+|||++++++..+|.++--+.. .+. ...+++||+.+.+.
T Consensus 273 ~~~~~E~K~DG~R~qi~~~g~~v~l~SR~g~~~t~~fP~l~~~~~~-~l~-~~~~iLDGElv~~d 335 (621)
T 2hiv_A 273 GNAIVDYKYDGERAQIHKKEDKIFIFSRRLENITSQYPDVVDYVSK-YIE-GKEFIIEGEIVAID 335 (621)
T ss_dssp TCEEEEEECSSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHH-HBC-CSSEEEEEEEEEBC
T ss_pred CcEEEEEEEcceeEEEEEcCCEEEEEcCCCcCcHhhhhhHHHHHHH-hCC-CcCeEEeEEEEEee
Confidence 3799999999999999999999999999999999888875432221 122 34566899998874
No 13
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=98.42 E-value=1.5e-07 Score=80.65 Aligned_cols=63 Identities=33% Similarity=0.423 Sum_probs=49.5
Q ss_pred ceeEEEeeeccceeeEeeeCCeeEEeecCccceeeccccccceeccceeccccceeccceEeecc
Q psy14581 5 ERCYSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFP 69 (124)
Q Consensus 5 ~~f~~E~K~DGER~QiH~~~~~~k~fSRn~ep~t~~~Ps~V~EI~~a~~~~s~~~~~~G~~lrFP 69 (124)
+.|++|+||||+|+|+|+.++.+.+|||++++++..+|.++--+..+ +. ...+++||+.+.+.
T Consensus 242 ~~~~~E~K~DG~R~~i~~~~g~v~l~SR~g~~~t~~fPel~~~~~~~-l~-~~~~iLDGElv~~d 304 (561)
T 2cfm_A 242 GEAEFEIKYDGARVQVHKDGSKIIVYSRRLENVTRAIPEIVEALKEA-II-PEKAIVEGELVAIG 304 (561)
T ss_dssp SCEEEEEECCSEEEEEEEETTEEEEECTTCCBCGGGCHHHHHHHHHH-BC-SSEEEEEEEEEEBC
T ss_pred CcEEEEEeEceEEEEEEEECCEEEEEeCCCCCchhhhhhHHHHHHHh-CC-CcceEeeeEEEEEc
Confidence 37999999999999999999999999999999998888755322211 22 33566899988874
No 14
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=98.27 E-value=4.7e-07 Score=72.92 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=43.8
Q ss_pred ceeEEEeeeccceeeEeee-CCeeEEeecCccceee------ccccccceeccceeccccceeccceEeec
Q psy14581 5 ERCYSEIKYDGERVQVHKK-GNEFKYFSRSLKPVLE------HKAQPVWEISGAEFSQAEIHTADGISIRF 68 (124)
Q Consensus 5 ~~f~~E~K~DGER~QiH~~-~~~~k~fSRn~ep~t~------~~Ps~V~EI~~a~~~~s~~~~~~G~~lrF 68 (124)
+.|++|+||||+|+|+|+. ++.+.+|||++.+++. .+|.++..+..+.-.....+++||+.+..
T Consensus 26 ~~~~~E~K~DG~R~~~~~~~~g~v~l~SR~g~~~~~l~~~~~~~p~~~~~l~~~~~~~~~~~iLDGElv~~ 96 (348)
T 1a0i_A 26 GYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDVRWKRLLNDDRCFYKDGFMLDGELMVK 96 (348)
T ss_dssp SSEEEEECCCSEEEEEEEETTSEEEEECTTSCBCGGGGGGCEECHHHHHHHHSTTCCCTTEEEEEEEEEES
T ss_pred CcEEEEEeeceeEEEEEEeCCCeEEEEcCCCCCCcchhhhhcccchHHHHHhhhhccCCCCEEEEEEEEEe
Confidence 5799999999999999998 5789999999887654 23333323332100111256689998874
No 15
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=97.53 E-value=0.00011 Score=59.08 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=35.0
Q ss_pred ceeEEEeeeccceeeEeee---C-CeeEEeecCccceeeccccc
Q psy14581 5 ERCYSEIKYDGERVQVHKK---G-NEFKYFSRSLKPVLEHKAQP 44 (124)
Q Consensus 5 ~~f~~E~K~DGER~QiH~~---~-~~~k~fSRn~ep~t~~~Ps~ 44 (124)
..|++|+|+||.|+|+|+. + +.+..+||++++++-+.|..
T Consensus 75 ~~y~ve~K~DG~R~ll~~~~~~g~g~v~L~sR~~~~~t~~fp~~ 118 (330)
T 1ckm_A 75 NKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNI 118 (330)
T ss_dssp SCEEEEEEECSEEEEEEEEEETTEEEEEEECTTCCEEECCCSCC
T ss_pred CCEEEEECcceEEEEEEEEecCCCCEEEEEeCCCCEEeccChhh
Confidence 5699999999999999998 4 67999999999998776653
No 16
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=97.36 E-value=0.00013 Score=59.87 Aligned_cols=63 Identities=19% Similarity=0.121 Sum_probs=42.8
Q ss_pred CceeEEEeeeccceeeEee-----eCCeeEEeecCcccee---eccccccceecc-ceeccccceeccceEeec
Q psy14581 4 NERCYSEIKYDGERVQVHK-----KGNEFKYFSRSLKPVL---EHKAQPVWEISG-AEFSQAEIHTADGISIRF 68 (124)
Q Consensus 4 ~~~f~~E~K~DGER~QiH~-----~~~~~k~fSRn~ep~t---~~~Ps~V~EI~~-a~~~~s~~~~~~G~~lrF 68 (124)
...|++|+|+||.|+|+|+ .++.+..++|++++++ ..+|..+-.... +.+ .+...+||+.+..
T Consensus 59 ~~~~~ve~K~DG~R~ll~~~~~~~~g~~v~L~sR~~~~~~i~~~~FP~~~~~~~~~~~~--~~~~vLDGElV~~ 130 (395)
T 1p16_A 59 QKDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETREKPTY--HHGTLLDGELVLE 130 (395)
T ss_dssp HSCEEEEEEECSEEEEEEEEEETTTEEEEEEEETTCCEEECCSCCCCSCTTCCSSSCCC--CSSEEEEEEEEEE
T ss_pred cCCEEEEECccceEEEEEEeecccCCCEEEEEeCCCceEEeccccCCcccccccchhcc--CCcceeeeEEEEe
Confidence 4579999999999999998 4568999999999865 356654422210 011 1234467777664
No 17
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=96.84 E-value=0.00092 Score=54.23 Aligned_cols=41 Identities=17% Similarity=0.026 Sum_probs=34.0
Q ss_pred CceeEEEeeeccceeeEeee-CCeeEEeecCcccee---eccccc
Q psy14581 4 NERCYSEIKYDGERVQVHKK-GNEFKYFSRSLKPVL---EHKAQP 44 (124)
Q Consensus 4 ~~~f~~E~K~DGER~QiH~~-~~~~k~fSRn~ep~t---~~~Ps~ 44 (124)
...|++|+|+||.|++++.. ++.+..++|++++++ ..+|..
T Consensus 62 ~~~y~v~~K~DG~R~ll~i~~~~~v~L~sR~~~~~~~~~~~FP~~ 106 (343)
T 3rtx_A 62 QKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFR 106 (343)
T ss_dssp HSCEEEEEECCCEEEEEEECSTTCEEEECTTCCEEEETTCCCEET
T ss_pred cCCEEEEECCCceEEEEEEEcCCEEEEEeCCCCeEEeccccCCcc
Confidence 35688999999999999998 789999999999875 345643
No 18
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=96.81 E-value=0.00063 Score=53.73 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=27.5
Q ss_pred CceeEEEeeeccceeeEeeeCCeeEEeecCccceee
Q psy14581 4 NERCYSEIKYDGERVQVHKKGNEFKYFSRSLKPVLE 39 (124)
Q Consensus 4 ~~~f~~E~K~DGER~QiH~~~~~~k~fSRn~ep~t~ 39 (124)
.+.|++|+||||+|+|+ + . .+|||++++++.
T Consensus 18 ~~~~~~E~K~DG~R~~~---~-g-~l~SR~g~~~t~ 48 (297)
T 1fvi_A 18 QFPCLATPKIAGIRSVK---Q-T-QMLSRTFKPIRN 48 (297)
T ss_dssp CSSEEEEECCCSEEEEE---S-S-SEECTTSCBCSC
T ss_pred CCcEEEEeeEeeeeEEe---c-C-EEECCCCcccCc
Confidence 56799999999999998 3 3 999999999985
No 19
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=96.78 E-value=0.00045 Score=55.39 Aligned_cols=36 Identities=25% Similarity=0.217 Sum_probs=29.1
Q ss_pred Cccceeecccc--ccceeccceeccccceeccceEeecccceeee
Q psy14581 33 SLKPVLEHKAQ--PVWEISGAEFSQAEIHTADGISIRFPRVTKIR 75 (124)
Q Consensus 33 n~ep~t~~~Ps--~V~EI~~a~~~~s~~~~~~G~~lrFPR~~~iR 75 (124)
+..+.+|..|. .|+||+.++++. +| +||||||.++|
T Consensus 311 ~~~~~~wv~P~~g~v~eV~~~~~t~------~G-~lRfP~f~~~R 348 (348)
T 1a0i_A 311 GDNDACTINPYDGWACQISYMEETP------DG-SLRHPSFVMFR 348 (348)
T ss_dssp ---CCCCCCTTTTCEEEEEESEECT------TS-CEESCEEEEEC
T ss_pred CCCCcEEEcCCCcEEEEEEeeeecC------CC-ceECCeEeEeC
Confidence 34578898887 999999998874 57 99999999987
No 20
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=95.40 E-value=0.0035 Score=49.43 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=17.1
Q ss_pred cccceeccceeccccceeccceEeecccceeeecCCCc
Q psy14581 43 QPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDW 80 (124)
Q Consensus 43 s~V~EI~~a~~~~s~~~~~~G~~lrFPR~~~iR~DK~~ 80 (124)
..|.||+..+++. +| .+|||||.++|.||+|
T Consensus 267 g~v~ev~~~~~t~------~g-~lRfP~f~r~R~Dk~~ 297 (297)
T 1fvi_A 267 GKMVKFKYFEMGS------KD-CPRFPVFIGIRHEEDR 297 (297)
T ss_dssp TCEEEEEEECC------------CEEEEEEEEC-----
T ss_pred CcEEEEEEEEeCC------CC-CccCCeEEEEEcCCCC
Confidence 4567777666543 35 6999999999999976
No 21
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=93.96 E-value=0.072 Score=44.88 Aligned_cols=37 Identities=22% Similarity=0.058 Sum_probs=31.7
Q ss_pred CCCceeEEEeeeccceeeEeeeC------CeeEEeecCcccee
Q psy14581 2 AKNERCYSEIKYDGERVQVHKKG------NEFKYFSRSLKPVL 38 (124)
Q Consensus 2 ~~~~~f~~E~K~DGER~QiH~~~------~~~k~fSRn~ep~t 38 (124)
|....|++++|+||.|+++.... +.+..++|+...++
T Consensus 62 L~~~dY~V~eK~DGiR~Ll~i~~~~~~g~g~v~LidR~~~~~~ 104 (461)
T 3kyh_C 62 LLAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYL 104 (461)
T ss_dssp TSSSCEEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSCEEE
T ss_pred hccCCEEEEEcccceEEEEEEeccccCCCceEEEEeCCCCeEE
Confidence 56788999999999999999872 57899999988875
No 22
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=93.94 E-value=0.062 Score=44.14 Aligned_cols=33 Identities=24% Similarity=0.142 Sum_probs=30.1
Q ss_pred CceeEEEeeeccceeeEeeeCCeeEEeecCccc
Q psy14581 4 NERCYSEIKYDGERVQVHKKGNEFKYFSRSLKP 36 (124)
Q Consensus 4 ~~~f~~E~K~DGER~QiH~~~~~~k~fSRn~ep 36 (124)
...|++|.|+||.++++++.++.+..+||+...
T Consensus 94 ~~~~vvEeKlDG~~v~l~y~~G~v~a~TRg~g~ 126 (389)
T 2vug_A 94 RGEFYVEEKVDGYNVRVVMYKGKMLGITRGGFI 126 (389)
T ss_dssp SCEEEEEEECCSEEEEEEEETTEEEEEETTSCB
T ss_pred CCeEEEEEeecCcEEEEEEECCEEEEEeCCCCC
Confidence 357999999999999999998899999999887
No 23
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=93.06 E-value=0.038 Score=45.06 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=32.2
Q ss_pred ccccceeccceeccccceeccceEeecccceeeecCCC-ccccCCHHHHHHHHHHc
Q psy14581 42 AQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKD-WKTATNLPELKVLFKKS 96 (124)
Q Consensus 42 Ps~V~EI~~a~~~~s~~~~~~G~~lrFPR~~~iR~DK~-~~~a~t~~~l~~l~~~~ 96 (124)
+..|+|+..++ + ..| |||+.|+|.||+ ++..+|+..+.+++...
T Consensus 320 ~~~IvEc~~~~----~---~~g----~wr~~R~R~DK~~pN~~~t~~~vl~si~~~ 364 (395)
T 1p16_A 320 QGRIAECRQST----T---KKG----YWEMLRFRNDKSNGNHISVVEKILVSIKDG 364 (395)
T ss_dssp TTCEEEEEECS----S---STT----EEEEEEECTTCSSCCBHHHHHHHHHHHHHS
T ss_pred CCEEEEEEeec----C---CCC----ccEEEEEeCCCCCcChHHHHHHHHHHHHcc
Confidence 45666666543 0 234 999999999999 88888888887777554
No 24
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=87.50 E-value=0.39 Score=38.26 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=20.4
Q ss_pred cccceeeecCCCccccCCHHHHHHHHHH
Q psy14581 68 FPRVTKIRDDKDWKTATNLPELKVLFKK 95 (124)
Q Consensus 68 FPR~~~iR~DK~~~~a~t~~~l~~l~~~ 95 (124)
|||+.|+|.||+ +|.+++-+..+..+
T Consensus 288 ~wr~~R~R~DK~--~~n~~~t~~~v~~s 313 (330)
T 1ckm_A 288 TWKYIQGRSDKN--QANDRLTYEKTLLN 313 (330)
T ss_dssp EEEEEEECTTCS--SCCBHHHHHHHHHH
T ss_pred ceEEEEEeCCCC--CCCHHHHHHHHHHh
Confidence 899999999999 56666666665554
No 25
>1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4
Probab=84.95 E-value=0.99 Score=34.47 Aligned_cols=34 Identities=9% Similarity=0.055 Sum_probs=30.1
Q ss_pred CCCceeEEEeeeccceeeEeeeCCeeEEeecCcc
Q psy14581 2 AKNERCYSEIKYDGERVQVHKKGNEFKYFSRSLK 35 (124)
Q Consensus 2 ~~~~~f~~E~K~DGER~QiH~~~~~~k~fSRn~e 35 (124)
+.+++|.++.|+||..+.+...++.+..+||+..
T Consensus 25 ~~~~~vvvtEKldG~N~~i~~~~~~i~~~sR~~~ 58 (249)
T 1s68_A 25 LTGGEWVAREKIHGTNFSLIIERDKVTCAKRTGP 58 (249)
T ss_dssp CSCSCEEEEECCCSEEEEEEEESSCEEEEETTEE
T ss_pred cCCCCEEEEEEECCcceEEEEECCEEEEEeCCcc
Confidence 4567899999999999999988889999999864
No 26
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A*
Probab=80.13 E-value=1.9 Score=34.41 Aligned_cols=34 Identities=6% Similarity=0.017 Sum_probs=30.2
Q ss_pred CCCceeEEEeeeccceeeEeeeCCeeEEeecCcc
Q psy14581 2 AKNERCYSEIKYDGERVQVHKKGNEFKYFSRSLK 35 (124)
Q Consensus 2 ~~~~~f~~E~K~DGER~QiH~~~~~~k~fSRn~e 35 (124)
+.+.+|.++.|.||..+.+...++.+.+++|+..
T Consensus 26 l~~~~vvvtEKlDG~N~~i~~~~~~i~~~sR~~~ 59 (335)
T 2hvq_A 26 LTGGEWVAREXIHGTNFSLIIERDKVTCAKRTGP 59 (335)
T ss_dssp CSCSCEEEEECCSSEEEEEEEETTEEEEEETTEE
T ss_pred cCCCcEEEEEEecCcceEEEEECCEEEEecCCcc
Confidence 4577899999999999999998889999999864
No 27
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=70.66 E-value=5.2 Score=32.71 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=27.5
Q ss_pred CceeEEEeeeccceeeEeeeCCeeEEeecCccc
Q psy14581 4 NERCYSEIKYDGERVQVHKKGNEFKYFSRSLKP 36 (124)
Q Consensus 4 ~~~f~~E~K~DGER~QiH~~~~~~k~fSRn~ep 36 (124)
.+.|++|.|+||.++-+..-++.+.-+||++..
T Consensus 72 ~~~~~veEKLDG~NVRi~~~dG~ilA~TRgG~i 104 (370)
T 3qwu_A 72 EAPFWVEEKVDGYNTRIFKYGDNYYALSRGGFI 104 (370)
T ss_dssp SSCEEEEEECSSEEEEEEEETTEEEEECTTSCB
T ss_pred CCcEEEEEeeCCeEEEEEEECCEEEEEcCCCcc
Confidence 378999999999988886667788889998754
No 28
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=56.07 E-value=10 Score=30.44 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=27.6
Q ss_pred eeEEEeeeccceeeEeeeCCe-eEEeec----Cccceee
Q psy14581 6 RCYSEIKYDGERVQVHKKGNE-FKYFSR----SLKPVLE 39 (124)
Q Consensus 6 ~f~~E~K~DGER~QiH~~~~~-~k~fSR----n~ep~t~ 39 (124)
.|.+|.|+||-.+.+.+.++. ++-.+| .+++.|.
T Consensus 114 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~ 152 (332)
T 1ta8_A 114 AYCCELKIDGLAISLRYENGVFVRGATRGDGTVGENITE 152 (332)
T ss_dssp CEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHH
T ss_pred eEEEeeeecceEEEEEEECCEEEEEEcCCCCccchhHHH
Confidence 499999999999999998886 577788 5566654
No 29
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=50.74 E-value=19 Score=28.33 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=28.8
Q ss_pred CCceeEEEeeeccceeeEeeeCCe-eEEeecC----ccceee
Q psy14581 3 KNERCYSEIKYDGERVQVHKKGNE-FKYFSRS----LKPVLE 39 (124)
Q Consensus 3 ~~~~f~~E~K~DGER~QiH~~~~~-~k~fSRn----~ep~t~ 39 (124)
.+..|.+|.|+||-.+.+.+.++. ++-.+|. +++.|.
T Consensus 100 ~~~~~~~epKiDGlavsL~Y~~G~L~~a~TRGDG~~GeDiT~ 141 (305)
T 4glw_A 100 AHPTYICELKIDGLSISLTYEKGILVAGVTRGDGSIGENITE 141 (305)
T ss_dssp SSCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEECHH
T ss_pred CCCcEEEEeeecceEEEEEEeCCeEEEEEecCCCcchhhHHH
Confidence 456799999999999999998775 5777776 555553
No 30
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=50.39 E-value=16 Score=29.07 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=27.4
Q ss_pred eeEEEeeeccceeeEeeeCCe-eEEeec----Cccceee
Q psy14581 6 RCYSEIKYDGERVQVHKKGNE-FKYFSR----SLKPVLE 39 (124)
Q Consensus 6 ~f~~E~K~DGER~QiH~~~~~-~k~fSR----n~ep~t~ 39 (124)
.|.+|.|+||-.+.+.+.++. ++-.+| .+++.|.
T Consensus 108 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~ 146 (318)
T 1b04_A 108 AYVCELAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITE 146 (318)
T ss_dssp CEEEEEEESSEEEEEEEETTEEEEEEECTTSSCEEBCHH
T ss_pred eEEEEEecccEEEEEEEECCEEEEEEccCCCcccHHHHH
Confidence 599999999999999998774 467777 5666664
No 31
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=43.44 E-value=12 Score=28.42 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=39.6
Q ss_pred cccceeccceeccccceeccceEeecc-cceeeecCCCccccCCHHHHHHHHHHcc---cCCCccccCcc
Q psy14581 43 QPVWEISGAEFSQAEIHTADGISIRFP-RVTKIRDDKDWKTATNLPELKVLFKKSK---ETSDFTLKPKY 108 (124)
Q Consensus 43 s~V~EI~~a~~~~s~~~~~~G~~lrFP-R~~~iR~DK~~~~a~t~~~l~~l~~~~~---~~~~~~~~~~~ 108 (124)
..|.+|.+..++..-+|++.|.+|.|. .+..+|+. |.+++..|....- .+.++.+-.+.
T Consensus 116 g~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v~ea-------t~eei~~~~~~~~~~~~~~~~~~~~~~ 178 (231)
T 3prb_A 116 GKIVSINSGRVLVDFNHELAGKEVKYRIKIEEVVDD-------KKNIVKEIVKMYVPRLSDVKVTIRNGT 178 (231)
T ss_dssp EEEEEEETTEEEEECSCTTTTCCEEEEEEEEEECCS-------HHHHHHHHHHHHCTTCCCCEEEEETTE
T ss_pred EEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEecC-------CHHHHHHHHHHhcCCccceEEEEeCCe
Confidence 356667777777778899999999999 77788853 4566666655543 34455554443
No 32
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=35.46 E-value=12 Score=26.24 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=26.6
Q ss_pred cccceeccceeccccceeccceEeecc-cceeeec
Q psy14581 43 QPVWEISGAEFSQAEIHTADGISIRFP-RVTKIRD 76 (124)
Q Consensus 43 s~V~EI~~a~~~~s~~~~~~G~~lrFP-R~~~iR~ 76 (124)
..|.+|....++..-+|++.|.+|.|. .++.+|.
T Consensus 112 ~~V~~v~~~~v~vD~NHPLAG~~L~F~v~v~~v~~ 146 (151)
T 2kr7_A 112 AIIKDFSATHVMVDYNHPLAGKTLAFRFKVLGFRE 146 (151)
T ss_dssp EEEEEECSSEEEEEECCTTSCCCEEEEEEEEEEEC
T ss_pred EEEEEECCCEEEEECCCcCCCCEEEEEEEEEEeec
Confidence 346677777777778899999999999 7777773
No 33
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=33.83 E-value=17 Score=28.98 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=26.3
Q ss_pred ceeEEEeeeccceeeEeeeCCe-eEEeec----Cccceee
Q psy14581 5 ERCYSEIKYDGERVQVHKKGNE-FKYFSR----SLKPVLE 39 (124)
Q Consensus 5 ~~f~~E~K~DGER~QiH~~~~~-~k~fSR----n~ep~t~ 39 (124)
-.|.+|.|+||-.+.+.+.++. ++-.+| .+++.|.
T Consensus 116 ~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~ 155 (328)
T 1zau_A 116 AHYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTL 155 (328)
T ss_dssp SCEEEEEEECSEEEEEECGGGBCCBCBBCTTSSEECBCHH
T ss_pred cceEEeeecceEEEEEEEECCEEEEEEccCCCcccHHHHH
Confidence 3599999999999999998664 466666 4555553
No 34
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=31.10 E-value=15 Score=25.93 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=27.4
Q ss_pred cccceeccceeccccceeccceEeecc-cceeeec
Q psy14581 43 QPVWEISGAEFSQAEIHTADGISIRFP-RVTKIRD 76 (124)
Q Consensus 43 s~V~EI~~a~~~~s~~~~~~G~~lrFP-R~~~iR~ 76 (124)
..|.+|.+..++..-+|++.|.+|.|. .++.+|+
T Consensus 103 ~~V~~v~~~~v~vD~NHPLAGk~L~F~vev~~v~~ 137 (158)
T 3cgm_A 103 LTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVRE 137 (158)
T ss_dssp EEEEEEETTEEEEECSCTTTTCCEEEEEEEEEEEE
T ss_pred EEEEEECCCEEEEeCCccccCCEEEEEEEEEEeec
Confidence 446677777777778898999999999 7778883
No 35
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=30.77 E-value=15 Score=26.47 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=26.5
Q ss_pred ccccceeccceeccccceeccceEeecc-cceeee
Q psy14581 42 AQPVWEISGAEFSQAEIHTADGISIRFP-RVTKIR 75 (124)
Q Consensus 42 Ps~V~EI~~a~~~~s~~~~~~G~~lrFP-R~~~iR 75 (124)
|..|.+|....++..-+|++.|.+|.|. .++.+|
T Consensus 130 ~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~vr 164 (169)
T 4dt4_A 130 PGVIREINGDSITVDFNHPLAGQTVHFDIEVLEID 164 (169)
T ss_dssp EEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEES
T ss_pred EEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEe
Confidence 4456677777777788899999999998 666776
No 36
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=27.71 E-value=20 Score=24.97 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=24.1
Q ss_pred cccceeccceeccccceeccceEeecc-cceeee
Q psy14581 43 QPVWEISGAEFSQAEIHTADGISIRFP-RVTKIR 75 (124)
Q Consensus 43 s~V~EI~~a~~~~s~~~~~~G~~lrFP-R~~~iR 75 (124)
..|.+|.+..++..-+|++.|.+|.|. .++.+|
T Consensus 117 ~~V~~v~~~~v~vD~NHPLAG~~L~F~vev~~v~ 150 (151)
T 1ix5_A 117 ATITEVTDNEVTLDFNHELAGKDLVFTIKIIEVV 150 (151)
T ss_dssp EEEEEEETTEEEEECCCSSTTCCEEEECCBCCCB
T ss_pred EEEEEEcCCEEEEeCCCCCCCCeEEEEEEEEEEe
Confidence 346677777777778888999999997 444444
No 37
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=26.15 E-value=17 Score=26.80 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=26.1
Q ss_pred cccceeccceeccccceeccceEeecc-cceeeec
Q psy14581 43 QPVWEISGAEFSQAEIHTADGISIRFP-RVTKIRD 76 (124)
Q Consensus 43 s~V~EI~~a~~~~s~~~~~~G~~lrFP-R~~~iR~ 76 (124)
..|.+|....++..-+|++.|.+|.|. .++.||+
T Consensus 107 ~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~vr~ 141 (196)
T 2kfw_A 107 VEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIRE 141 (196)
T ss_dssp EEBCCCCSSSEEECCCCTTSCCCCEEEEEECCCBC
T ss_pred EEEEEEcCCEEEEeCCCCCCCCeEEEEEEEEEeec
Confidence 346666666677777888999999999 6778884
No 38
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4}
Probab=25.79 E-value=80 Score=25.33 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=26.7
Q ss_pred CceeEEEeeeccceeeEeeeCCeeEEeecCcc
Q psy14581 4 NERCYSEIKYDGERVQVHKKGNEFKYFSRSLK 35 (124)
Q Consensus 4 ~~~f~~E~K~DGER~QiH~~~~~~k~fSRn~e 35 (124)
.+.+.++.|.||..+.+...++.+...||++-
T Consensus 92 ~~pv~V~eK~DGslv~~~~~~G~l~~~SKgs~ 123 (375)
T 2c5u_A 92 NDVDYILTKEDGSLVSTYLDGDEILFKSKGSI 123 (375)
T ss_dssp GGEEEEEEECCSEEEEEEEETTEEEEEETTBS
T ss_pred CCCEEEEEecCCeEEEEEEECCEEEEEeCCCC
Confidence 36899999999998777678889999998753
No 39
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=25.72 E-value=26 Score=25.08 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=26.9
Q ss_pred cccceeccceeccccceeccceEeecc-cceeeec
Q psy14581 43 QPVWEISGAEFSQAEIHTADGISIRFP-RVTKIRD 76 (124)
Q Consensus 43 s~V~EI~~a~~~~s~~~~~~G~~lrFP-R~~~iR~ 76 (124)
..|.+|....++..-+|++.|.+|.|. .+..+|.
T Consensus 107 ~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v~~ 141 (171)
T 2k8i_A 107 VEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIRE 141 (171)
T ss_dssp EEEEEECSSEEEEESCCSSCCCEEEEEEEEEEEEE
T ss_pred EEEEEEcCCEEEEeCCCCCCCCeEEEEEEEEEecc
Confidence 346677777777778888999999999 6778884
No 40
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=23.99 E-value=95 Score=24.60 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=22.4
Q ss_pred eeEEEeeeccceeeEeeeCCe-eEEeec
Q psy14581 6 RCYSEIKYDGERVQVHKKGNE-FKYFSR 32 (124)
Q Consensus 6 ~f~~E~K~DGER~QiH~~~~~-~k~fSR 32 (124)
.|.+|.|+||--+.+.+.++. +.-.+|
T Consensus 108 ~~~~EpKiDGlaisL~Ye~G~Lv~a~TR 135 (322)
T 3uq8_A 108 TFCCEPKLDGLAVSILYVNGELTQAATR 135 (322)
T ss_dssp EEEEEEEESSEEEEEEEETTEEEEEEEC
T ss_pred eEEEEEeeceEEEEEEEeCCEEEEEEec
Confidence 699999999999999998775 455666
No 41
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=21.51 E-value=1.1e+02 Score=24.26 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=22.7
Q ss_pred ceeEEEeeeccceeeEeeeCCee-EEeec
Q psy14581 5 ERCYSEIKYDGERVQVHKKGNEF-KYFSR 32 (124)
Q Consensus 5 ~~f~~E~K~DGER~QiH~~~~~~-k~fSR 32 (124)
-.|.+|.|+||--+.+.+.++.. +-.+|
T Consensus 105 ~~~~~EpKiDGlaisL~Ye~G~Lv~a~TR 133 (318)
T 3jsl_A 105 VEYMCELKIDGLAVSLKYVDGYFVQGLTR 133 (318)
T ss_dssp CCEEEEEEECSEEEEEEEETTEEEEEEEC
T ss_pred ceEEEEEeecceEEEEEEECCEEEEEEeC
Confidence 36999999999999999987754 55566
No 42
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=20.34 E-value=1e+02 Score=24.15 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=27.5
Q ss_pred CCceeEEEeeeccceeeEee--eCCe--eEEeecCc
Q psy14581 3 KNERCYSEIKYDGERVQVHK--KGNE--FKYFSRSL 34 (124)
Q Consensus 3 ~~~~f~~E~K~DGER~QiH~--~~~~--~k~fSRn~ 34 (124)
.+..|.+..|.+|-++.+-. .++. +.+.+|+.
T Consensus 31 ~~~ewvatEKIHGaNFsii~~~d~~~~~i~~akRs~ 66 (277)
T 1xdn_A 31 AAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSG 66 (277)
T ss_dssp GGSCEEEEEECCSEEEEEEEEEETTEEEEEEEETTE
T ss_pred CCCcEEEEEeeccccEEEEEecCCCeeEEEEeeccc
Confidence 45789999999999999988 6676 89999984
No 43
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=20.15 E-value=47 Score=22.36 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=24.3
Q ss_pred ceeEEEeeeccceeeEeeeCC--eeEEeecCccceeeccc
Q psy14581 5 ERCYSEIKYDGERVQVHKKGN--EFKYFSRSLKPVLEHKA 42 (124)
Q Consensus 5 ~~f~~E~K~DGER~QiH~~~~--~~k~fSRn~ep~t~~~P 42 (124)
+.+|+.+|.+|-+++.-..+. .|..-+.+ +..|..|
T Consensus 58 ~vYYl~fKv~GRKveaEVi~sp~dYvli~P~--DiPW~~~ 95 (107)
T 2jys_A 58 DVYYLTFKVQGRKVEAEVLASPYDYILLNPS--DVPWLMK 95 (107)
T ss_dssp EEEEEEEEESSCEEEEEEEEESSSSEEECTT--TCHHHHS
T ss_pred eEEEEEEEEcCeEEEEEEecCcccEEEEcCc--Ccccccc
Confidence 679999999999988876543 45555554 4444444
Done!