Your job contains 1 sequence.
>psy14581
MAKNERCYSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHT
ADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKSKETSDFTLKPKYDRIKNLKLQKAR
CISY
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14581
(124 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1P394 - symbol:LIG3 "DNA ligase" species:9031 ... 262 2.1e-21 1
UNIPROTKB|P49916 - symbol:LIG3 "DNA ligase 3" species:960... 260 4.1e-21 1
UNIPROTKB|I3L9T2 - symbol:I3L9T2 "Uncharacterized protein... 244 1.8e-20 1
UNIPROTKB|E2RNT6 - symbol:LIG3 "DNA ligase" species:9615 ... 249 5.5e-20 1
UNIPROTKB|J9P597 - symbol:LIG3 "DNA ligase" species:9615 ... 249 5.6e-20 1
RGD|1309875 - symbol:Lig3 "ligase III, DNA, ATP-dependent... 247 9.0e-20 1
UNIPROTKB|D4A2K2 - symbol:Lig3 "DNA ligase" species:10116... 247 9.2e-20 1
UNIPROTKB|D4A837 - symbol:Lig3 "DNA ligase" species:10116... 247 1.0e-19 1
MGI|MGI:109152 - symbol:Lig3 "ligase III, DNA, ATP-depend... 247 1.0e-19 1
DICTYBASE|DDB_G0283857 - symbol:lig3 "DNA ligase III" spe... 136 2.9e-19 2
UNIPROTKB|F1MQY1 - symbol:LIG3 "DNA ligase" species:9913 ... 236 1.4e-18 1
FB|FBgn0038035 - symbol:lig3 "DNA ligase III" species:722... 173 5.9e-12 1
ZFIN|ZDB-GENE-030131-8453 - symbol:lig3 "ligase III, DNA,... 160 1.3e-10 1
DICTYBASE|DDB_G0292760 - symbol:lig4 "BRCT domain-contain... 98 1.4e-10 2
RGD|1304639 - symbol:Lig4 "ligase IV, DNA, ATP-dependent"... 96 3.2e-10 2
UNIPROTKB|O67398 - symbol:lig "Probable DNA ligase" speci... 105 4.4e-10 2
UNIPROTKB|F1P275 - symbol:LIG4 "DNA ligase" species:9031 ... 93 6.6e-10 2
UNIPROTKB|Q90YB1 - symbol:LIG4 "DNA ligase 4" species:903... 93 6.6e-10 2
ZFIN|ZDB-GENE-070820-10 - symbol:lig4 "ligase IV, DNA, AT... 91 8.4e-10 2
UNIPROTKB|K7ERZ5 - symbol:LIG3 "DNA ligase 3" species:960... 146 2.6e-09 1
DICTYBASE|DDB_G0274493 - symbol:lig1 "DNA ligase I" speci... 117 4.7e-09 2
UNIPROTKB|Q8TSR7 - symbol:lig1 "DNA ligase 1" species:188... 97 6.2e-09 2
UNIPROTKB|F1RL99 - symbol:LIG1 "DNA ligase" species:9823 ... 97 1.1e-08 2
UNIPROTKB|F5GZ28 - symbol:LIG1 "DNA ligase" species:9606 ... 94 1.6e-08 2
UNIPROTKB|B4DTU4 - symbol:LIG1 "DNA ligase" species:9606 ... 94 1.7e-08 2
UNIPROTKB|P18858 - symbol:LIG1 "DNA ligase 1" species:960... 94 1.9e-08 2
UNIPROTKB|A4IFC8 - symbol:LIG1 "DNA ligase" species:9913 ... 94 2.3e-08 2
UNIPROTKB|F1M624 - symbol:Lig1 "DNA ligase" species:10116... 93 2.9e-08 2
UNIPROTKB|F1M8E6 - symbol:Lig1 "DNA ligase" species:10116... 93 2.9e-08 2
UNIPROTKB|A8JH25 - symbol:LIG1 "DNA ligase" species:3055 ... 103 3.5e-08 2
UNIPROTKB|F6URE1 - symbol:LIG1 "DNA ligase" species:9615 ... 89 6.5e-07 2
MGI|MGI:101789 - symbol:Lig1 "ligase I, DNA, ATP-dependen... 89 6.5e-07 2
UNIPROTKB|E2QTV4 - symbol:LIG1 "Uncharacterized protein" ... 89 6.6e-07 2
UNIPROTKB|Q0JKB6 - symbol:Os01g0685500 "Os01g0685500 prot... 112 5.0e-06 1
POMBASE|SPBC713.06 - symbol:adl1 "DNA ligase (predicted)"... 86 7.6e-06 2
RGD|621424 - symbol:Lig1 "ligase I, DNA, ATP-dependent" s... 88 1.2e-05 2
TAIR|locus:2175544 - symbol:ATLIG4 species:3702 "Arabidop... 87 1.5e-05 2
UNIPROTKB|G4MQC2 - symbol:MGG_10627 "ATP-dependent DNA li... 93 2.0e-05 2
UNIPROTKB|Q8TMT1 - symbol:lig2 "DNA ligase 2" species:188... 82 2.1e-05 2
UNIPROTKB|H9L029 - symbol:LIG1 "Uncharacterized protein" ... 87 5.0e-05 2
UNIPROTKB|H9L3I6 - symbol:LIG1 "Uncharacterized protein" ... 87 5.2e-05 2
FB|FBgn0262619 - symbol:DNA-ligI "DNA ligase I" species:7... 107 6.1e-05 1
UNIPROTKB|Q7RPC6 - symbol:PY01533 "DNA ligase" species:73... 107 6.9e-05 1
UNIPROTKB|G4NHG0 - symbol:MGG_03854 "DNA ligase" species:... 107 7.2e-05 1
UNIPROTKB|Q5R6L3 - symbol:DNL4 "DNA ligase 4" species:960... 100 8.9e-05 2
UNIPROTKB|P49917 - symbol:LIG4 "DNA ligase 4" species:960... 97 8.9e-05 2
UNIPROTKB|F1RLP1 - symbol:LIG4 "DNA ligase" species:9823 ... 91 9.0e-05 2
TAIR|locus:2199953 - symbol:LIG1 "DNA ligase 1" species:3... 103 0.00018 1
UNIPROTKB|E2R0G7 - symbol:LIG4 "DNA ligase" species:9615 ... 91 0.00023 2
MGI|MGI:1335098 - symbol:Lig4 "ligase IV, DNA, ATP-depend... 102 0.00027 1
GENEDB_PFALCIPARUM|MAL13P1.22 - symbol:MAL13P1.22 "DNA li... 102 0.00027 1
UNIPROTKB|Q8IES4 - symbol:PfLigI "DNA ligase" species:363... 102 0.00027 1
TAIR|locus:2010207 - symbol:AT1G49250 species:3702 "Arabi... 85 0.00046 2
UNIPROTKB|G4N7T1 - symbol:MGG_06370 "DNA ligase" species:... 82 0.00050 2
>UNIPROTKB|F1P394 [details] [associations]
symbol:LIG3 "DNA ligase" species:9031 "Gallus gallus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003910 "DNA ligase (ATP)
activity" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:WSETDLL Gene3D:3.30.1740.10
GeneTree:ENSGT00700000104500 EMBL:AADN02025943 IPI:IPI00586176
Ensembl:ENSGALT00000003599 Uniprot:F1P394
Length = 900
Score = 262 (97.3 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 53/95 (55%), Positives = 70/95 (73%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFP 69
+I D ++ K N+ Y+ + P + K PVWEI+GAEFS+AE HTADGISIRFP
Sbjct: 658 KISKDPSKIPSWLKINKI-YYPDFIVP--DPKKAPVWEITGAEFSKAEAHTADGISIRFP 714
Query: 70 RVTKIRDDKDWKTATNLPELKVLFKKSKETSDFTL 104
R T+IRDDKDWKTATNLP+LK L++ SKE ++F++
Sbjct: 715 RCTRIRDDKDWKTATNLPQLKELYQLSKEKAEFSV 749
Score = 152 (58.6 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHK 41
Y+EIKYDGERVQVHK G+ F YFSRSLKPVL HK
Sbjct: 415 YAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHK 448
>UNIPROTKB|P49916 [details] [associations]
symbol:LIG3 "DNA ligase 3" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0043504 "mitochondrial
DNA repair" evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=IDA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0007283 "spermatogenesis" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_216
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
InterPro:IPR001357 GO:GO:0005524 GO:GO:0005694 GO:GO:0005654
GO:GO:0051301 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0008270 GO:GO:0007283 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
EMBL:CH471147 GO:GO:0007131 GO:GO:0006289 DrugBank:DB00290
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10776
EMBL:X84740 EMBL:U40671 EMBL:AF491645 EMBL:AC004223 EMBL:AC022903
EMBL:BC068005 IPI:IPI00000156 IPI:IPI00029081 PIR:I37292
RefSeq:NP_002302.2 RefSeq:NP_039269.2 UniGene:Hs.100299 PDB:1IMO
PDB:1IN1 PDB:1UW0 PDB:3L2P PDB:3PC7 PDB:3PC8 PDB:3QVG PDBsum:1IMO
PDBsum:1IN1 PDBsum:1UW0 PDBsum:3L2P PDBsum:3PC7 PDBsum:3PC8
PDBsum:3QVG ProteinModelPortal:P49916 SMR:P49916 IntAct:P49916
MINT:MINT-4531178 STRING:P49916 PhosphoSite:P49916 DMDM:251757259
PaxDb:P49916 PRIDE:P49916 DNASU:3980 Ensembl:ENST00000262327
Ensembl:ENST00000378526 GeneID:3980 KEGG:hsa:3980 UCSC:uc002hik.2
CTD:3980 GeneCards:GC17P033307 HGNC:HGNC:6600 HPA:HPA006723
MIM:600940 neXtProt:NX_P49916 PharmGKB:PA30374 HOGENOM:HOG000007653
HOVERGEN:HBG005515 InParanoid:P49916 OMA:WSETDLL OrthoDB:EOG44BB1K
BRENDA:6.5.1.1 ChiTaRS:LIG3 EvolutionaryTrace:P49916
GenomeRNAi:3980 NextBio:15598 ArrayExpress:P49916 Bgee:P49916
CleanEx:HS_LIG3 Genevestigator:P49916 GermOnline:ENSG00000005156
Gene3D:3.30.1740.10 Uniprot:P49916
Length = 1009
Score = 260 (96.6 bits), Expect = 4.1e-21, P = 4.1e-21
Identities = 54/102 (52%), Positives = 72/102 (70%)
Query: 3 KNERCYSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTAD 62
+NE +I D ++ K N+ Y+ + P + K VWEI+GAEFS++E HTAD
Sbjct: 742 QNELDMVKISKDPSKIPSWLKVNKI-YYPDFIVP--DPKKAAVWEITGAEFSKSEAHTAD 798
Query: 63 GISIRFPRVTKIRDDKDWKTATNLPELKVLFKKSKETSDFTL 104
GISIRFPR T+IRDDKDWK+ATNLP+LK L++ SKE +DFT+
Sbjct: 799 GISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV 840
Score = 151 (58.2 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHK 41
+SEIKYDGERVQVHK G+ F YFSRSLKPVL HK
Sbjct: 504 FSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHK 537
>UNIPROTKB|I3L9T2 [details] [associations]
symbol:I3L9T2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
GeneTree:ENSGT00700000104500 EMBL:FP312781
Ensembl:ENSSSCT00000023206 OMA:FRISKEH Uniprot:I3L9T2
Length = 390
Score = 244 (91.0 bits), Expect = 1.8e-20, P = 1.8e-20
Identities = 51/95 (53%), Positives = 67/95 (70%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFP 69
+I D ++ K N+ Y+ + P + K VWEI+GAEFS++E HTADGISIRFP
Sbjct: 144 KISKDPSKIPGWLKINKI-YYPDFIVP--DPKKAAVWEITGAEFSRSEAHTADGISIRFP 200
Query: 70 RVTKIRDDKDWKTATNLPELKVLFKKSKETSDFTL 104
R T+IRDDKDWK+ATNLP+LK L++ SKE + F L
Sbjct: 201 RCTRIRDDKDWKSATNLPQLKELYQLSKERAAFAL 235
>UNIPROTKB|E2RNT6 [details] [associations]
symbol:LIG3 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:AAEX03006627
Ensembl:ENSCAFT00000029122 Uniprot:E2RNT6
Length = 938
Score = 249 (92.7 bits), Expect = 5.5e-20, P = 5.5e-20
Identities = 51/95 (53%), Positives = 68/95 (71%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFP 69
+I D ++ K N+ Y+ + P + K VWEI+GAEFS++E HTADGISIRFP
Sbjct: 662 KISKDPSKIPNWLKINKI-YYPDFIVP--DPKKAAVWEITGAEFSRSEAHTADGISIRFP 718
Query: 70 RVTKIRDDKDWKTATNLPELKVLFKKSKETSDFTL 104
R T+IRDDKDWK+ATNLP+LK L++ SKE +DF +
Sbjct: 719 RCTRIRDDKDWKSATNLPQLKELYQLSKEKADFAV 753
Score = 151 (58.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHK 41
+SEIKYDGERVQVHK G+ F YFSRSLKPVL HK
Sbjct: 417 FSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHK 450
>UNIPROTKB|J9P597 [details] [associations]
symbol:LIG3 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:WSETDLL
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:AAEX03006627
Ensembl:ENSCAFT00000048097 Uniprot:J9P597
Length = 957
Score = 249 (92.7 bits), Expect = 5.6e-20, P = 5.6e-20
Identities = 51/95 (53%), Positives = 68/95 (71%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFP 69
+I D ++ K N+ Y+ + P + K VWEI+GAEFS++E HTADGISIRFP
Sbjct: 716 KISKDPSKIPNWLKINKI-YYPDFIVP--DPKKAAVWEITGAEFSRSEAHTADGISIRFP 772
Query: 70 RVTKIRDDKDWKTATNLPELKVLFKKSKETSDFTL 104
R T+IRDDKDWK+ATNLP+LK L++ SKE +DF +
Sbjct: 773 RCTRIRDDKDWKSATNLPQLKELYQLSKEKADFAV 807
Score = 151 (58.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHK 41
+SEIKYDGERVQVHK G+ F YFSRSLKPVL HK
Sbjct: 471 FSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHK 504
>RGD|1309875 [details] [associations]
symbol:Lig3 "ligase III, DNA, ATP-dependent" species:10116
"Rattus norvegicus" [GO:0000794 "condensed nuclear chromosome"
evidence=ISO] [GO:0000795 "synaptonemal complex" evidence=IEA;ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266 "DNA
ligation" evidence=IBA] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA;ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA;ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA;ISO] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0033151 "V(D)J recombination" evidence=ISO]
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
RGD:1309875 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0008270 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 KO:K10776 CTD:3980 HOGENOM:HOG000007653
HOVERGEN:HBG005515 Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500
EMBL:BC085959 IPI:IPI00565239 RefSeq:NP_001012011.1
UniGene:Rn.230056 SMR:Q5U2M4 STRING:Q5U2M4
Ensembl:ENSRNOT00000055982 GeneID:303369 KEGG:rno:303369
NextBio:651212 Genevestigator:Q5U2M4 Uniprot:Q5U2M4
Length = 943
Score = 247 (92.0 bits), Expect = 9.0e-20, P = 9.0e-20
Identities = 50/95 (52%), Positives = 68/95 (71%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFP 69
+I D ++ K N+ Y+ + P + K VWEI+GAEFS++E HTADGISIRFP
Sbjct: 751 KISKDPSKIPSWLKINKI-YYPDFIVP--DPKKAAVWEITGAEFSRSEAHTADGISIRFP 807
Query: 70 RVTKIRDDKDWKTATNLPELKVLFKKSKETSDFTL 104
R T+IRDDKDWK+ATNLP+LK L++ SK+ +DF +
Sbjct: 808 RCTRIRDDKDWKSATNLPQLKELYQLSKDKADFAV 842
Score = 156 (60.0 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 29/34 (85%), Positives = 31/34 (91%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHK 41
+SEIKYDGERVQVHKKG+ F YFSRSLKPVL HK
Sbjct: 506 FSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHK 539
>UNIPROTKB|D4A2K2 [details] [associations]
symbol:Lig3 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 RGD:1309875 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG44BB1K Gene3D:3.30.1740.10
IPI:IPI00563728 PRIDE:D4A2K2 Ensembl:ENSRNOT00000047849
ArrayExpress:D4A2K2 Uniprot:D4A2K2
Length = 955
Score = 247 (92.0 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 50/95 (52%), Positives = 68/95 (71%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFP 69
+I D ++ K N+ Y+ + P + K VWEI+GAEFS++E HTADGISIRFP
Sbjct: 755 KISKDPSKIPSWLKINKI-YYPDFIVP--DPKKAAVWEITGAEFSRSEAHTADGISIRFP 811
Query: 70 RVTKIRDDKDWKTATNLPELKVLFKKSKETSDFTL 104
R T+IRDDKDWK+ATNLP+LK L++ SK+ +DF +
Sbjct: 812 RCTRIRDDKDWKSATNLPQLKELYQLSKDKADFAV 846
Score = 156 (60.0 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 29/34 (85%), Positives = 31/34 (91%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHK 41
+SEIKYDGERVQVHKKG+ F YFSRSLKPVL HK
Sbjct: 510 FSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHK 543
>UNIPROTKB|D4A837 [details] [associations]
symbol:Lig3 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 RGD:1309875
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0008270 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 Gene3D:3.30.1740.10 IPI:IPI00370404
Ensembl:ENSRNOT00000029555 ArrayExpress:D4A837 Uniprot:D4A837
Length = 1014
Score = 247 (92.0 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 50/95 (52%), Positives = 68/95 (71%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFP 69
+I D ++ K N+ Y+ + P + K VWEI+GAEFS++E HTADGISIRFP
Sbjct: 755 KISKDPSKIPSWLKINKI-YYPDFIVP--DPKKAAVWEITGAEFSRSEAHTADGISIRFP 811
Query: 70 RVTKIRDDKDWKTATNLPELKVLFKKSKETSDFTL 104
R T+IRDDKDWK+ATNLP+LK L++ SK+ +DF +
Sbjct: 812 RCTRIRDDKDWKSATNLPQLKELYQLSKDKADFAV 846
Score = 156 (60.0 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 29/34 (85%), Positives = 31/34 (91%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHK 41
+SEIKYDGERVQVHKKG+ F YFSRSLKPVL HK
Sbjct: 510 FSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHK 543
>MGI|MGI:109152 [details] [associations]
symbol:Lig3 "ligase III, DNA, ATP-dependent" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006266 "DNA ligation" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IMP] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0043504 "mitochondrial DNA repair"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
InterPro:IPR001357 EMBL:U66057 MGI:MGI:109152 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0007049
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303
GO:GO:0006289 GO:GO:0045910 GO:GO:0043504 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 HOGENOM:HOG000007653
HOVERGEN:HBG005515 OrthoDB:EOG44BB1K Gene3D:3.30.1740.10
EMBL:U66058 EMBL:AL645594 IPI:IPI00124272 IPI:IPI00230471
UniGene:Mm.277136 ProteinModelPortal:P97386 SMR:P97386
IntAct:P97386 STRING:P97386 PhosphoSite:P97386 PaxDb:P97386
PRIDE:P97386 InParanoid:P97386 Bgee:P97386 CleanEx:MM_LIG3
Genevestigator:P97386 GermOnline:ENSMUSG00000020697 GO:GO:0000795
Uniprot:P97386
Length = 1015
Score = 247 (92.0 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 50/95 (52%), Positives = 68/95 (71%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFP 69
+I D ++ K N+ Y+ + P + K VWEI+GAEFS++E HTADGISIRFP
Sbjct: 754 KISKDPSKIPSWLKINKI-YYPDFIVP--DPKKAAVWEITGAEFSRSEAHTADGISIRFP 810
Query: 70 RVTKIRDDKDWKTATNLPELKVLFKKSKETSDFTL 104
R T+IRDDKDWK+ATNLP+LK L++ SK+ +DF +
Sbjct: 811 RCTRIRDDKDWKSATNLPQLKELYQLSKDKADFAV 845
Score = 156 (60.0 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 29/34 (85%), Positives = 31/34 (91%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHK 41
+SEIKYDGERVQVHKKG+ F YFSRSLKPVL HK
Sbjct: 509 FSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHK 542
Score = 36 (17.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 62 DGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKSKETSDFTLKPKYDRI 111
D S ++ VTK D T L + V+ K SK+ S K ++I
Sbjct: 722 DPDSQKWCTVTKCAGGHDDATLARLQKELVMVKISKDPSKIPSWLKINKI 771
>DICTYBASE|DDB_G0283857 [details] [associations]
symbol:lig3 "DNA ligase III" species:44689
"Dictyostelium discoideum" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IBA] [GO:0003909 "DNA ligase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA] [GO:0051301
"cell division" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
dictyBase:DDB_G0283857 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0051301 GenomeReviews:CM000153_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AAFI02000057 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
RefSeq:XP_638847.1 ProteinModelPortal:Q54QM4
EnsemblProtists:DDB0232266 GeneID:8624245 KEGG:ddi:DDB_G0283857
KO:K10776 OMA:INTGAKF ProtClustDB:CLSZ2736577 Uniprot:Q54QM4
Length = 1175
Score = 136 (52.9 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 1 MAKNERC-YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPV 45
+ K+ C Y+EIKYDGER+Q+HK GN+F +SR+LKP++ K V
Sbjct: 271 VVKSSECFYAEIKYDGERIQIHKDGNQFSCYSRNLKPLMPWKVDEV 316
Score = 136 (52.9 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 37 VLEHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKS 96
V + K ++EI AEF++++ HT G S+RFPR+ KIR DKD+KTAT L EL + K
Sbjct: 550 VKDIKQAMIFEIESAEFTKSDHHTT-GYSMRFPRILKIRHDKDYKTATTLEELVEIGKDI 608
Query: 97 K 97
K
Sbjct: 609 K 609
Score = 45 (20.9 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 20/73 (27%), Positives = 28/73 (38%)
Query: 46 WEISGAEFSQAEIHTADGISIRFPRVTKIRDDK-DWKTATNLPELKVLF--KKSKETSDF 102
W FSQ + + IR V K++DD + L + K KE+ F
Sbjct: 713 WPSIPKSFSQGDSNIIKSGEIR---VEKVKDDSISTNKKVFICNLSCIIPPKSKKESYTF 769
Query: 103 TLKPKYDRIKNLK 115
+LK IK K
Sbjct: 770 SLKEFKSAIKEAK 782
>UNIPROTKB|F1MQY1 [details] [associations]
symbol:LIG3 "DNA ligase" species:9913 "Bos taurus"
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:WSETDLL Gene3D:3.30.1740.10
GeneTree:ENSGT00700000104500 EMBL:DAAA02048465 IPI:IPI00905942
UniGene:Bt.25483 Ensembl:ENSBTAT00000024875 Uniprot:F1MQY1
Length = 943
Score = 236 (88.1 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 49/95 (51%), Positives = 66/95 (69%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFP 69
+I D ++ K N+ Y+ + P + K VWEI+GAEFS++E HTADGISIRFP
Sbjct: 751 KISKDPSKIPNWLKINKI-YYPDFIVP--DPKKAAVWEITGAEFSKSEAHTADGISIRFP 807
Query: 70 RVTKIRDDKDWKTATNLPELKVLFKKSKETSDFTL 104
R T+IRDDKDWK+AT LP+LK L++ SKE + F +
Sbjct: 808 RCTRIRDDKDWKSATTLPQLKELYQLSKERAAFAI 842
Score = 156 (60.0 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 29/34 (85%), Positives = 31/34 (91%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHK 41
+SEIKYDGERVQVHKKG+ F YFSRSLKPVL HK
Sbjct: 506 FSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHK 539
>FB|FBgn0038035 [details] [associations]
symbol:lig3 "DNA ligase III" species:7227 "Drosophila
melanogaster" [GO:0003910 "DNA ligase (ATP) activity"
evidence=ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
EMBL:AE014297 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0006289 GO:GO:0006273 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10776
CTD:3980 GeneTree:ENSGT00700000104500 FlyBase:FBgn0038035
EMBL:BT120103 RefSeq:NP_650187.2 UniGene:Dm.13380 SMR:Q9VG84
IntAct:Q9VG84 MINT:MINT-1007361 STRING:Q9VG84
EnsemblMetazoa:FBtr0082600 GeneID:41518 KEGG:dme:Dmel_CG17227
InParanoid:Q9VG84 OMA:NEDNKLD GenomeRNAi:41518 NextBio:824218
Uniprot:Q9VG84
Length = 806
Score = 173 (66.0 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 38/77 (49%), Positives = 52/77 (67%)
Query: 31 SRSLKP-VL--EHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLP 87
S+SL P VL + PVWEI+GAEF++++ HTA GIS+RFPR+T+ R DK K A +L
Sbjct: 538 SKSLVPDVLAKDPMKMPVWEITGAEFTKSDAHTASGISVRFPRITRRRSDKSAKEANDLA 597
Query: 88 ELKVLFKKSKETSDFTL 104
L+ LF+ SK + L
Sbjct: 598 HLEDLFEASKSNVNVDL 614
Score = 160 (61.4 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 27/34 (79%), Positives = 34/34 (100%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHK 41
YSEIKYDGERVQ+HK+GN+FK+FSR+LKPV++HK
Sbjct: 278 YSEIKYDGERVQIHKQGNDFKFFSRNLKPVVDHK 311
>ZFIN|ZDB-GENE-030131-8453 [details] [associations]
symbol:lig3 "ligase III, DNA, ATP-dependent"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003909 "DNA ligase activity" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 ZFIN:ZDB-GENE-030131-8453
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
TIGRFAMs:TIGR00574 CTD:3980 HOGENOM:HOG000007653 HOVERGEN:HBG005515
OrthoDB:EOG44BB1K Gene3D:3.30.1740.10 EMBL:BC098869 IPI:IPI00618829
RefSeq:NP_001025345.2 UniGene:Dr.107348 ProteinModelPortal:Q4KM23
SMR:Q4KM23 STRING:Q4KM23 GeneID:563276 InParanoid:Q4KM23
NextBio:20884821 Uniprot:Q4KM23
Length = 752
Score = 160 (61.4 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 30/34 (88%), Positives = 30/34 (88%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHK 41
YSEIKYDGERVQVHK GN F YFSRSLKPVL HK
Sbjct: 417 YSEIKYDGERVQVHKNGNHFSYFSRSLKPVLPHK 450
>DICTYBASE|DDB_G0292760 [details] [associations]
symbol:lig4 "BRCT domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0005958 "DNA-dependent
protein kinase-DNA ligase 4 complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0000012 "single strand break repair" evidence=ISS] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032807 "DNA ligase IV
complex" evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016874 "ligase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS50160 InterPro:IPR001357
dictyBase:DDB_G0292760 Pfam:PF00533 GO:GO:0005524 GO:GO:0005694
GenomeReviews:CM000155_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0000012 GO:GO:0005958
GO:GO:0006303 GO:GO:0006289 EMBL:AAFI02000196 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 Gene3D:1.10.3260.10 TIGRFAMs:TIGR00574
KO:K10777 OMA:HMCPSTK GO:GO:0032807 HSSP:Q08387 RefSeq:XP_629472.1
ProteinModelPortal:Q54CR9 EnsemblProtists:DDB0232255 GeneID:8628862
KEGG:ddi:DDB_G0292760 ProtClustDB:CLSZ2728715 Uniprot:Q54CR9
Length = 1088
Score = 98 (39.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 63 GISIRFPRVTKIRDDKDWKTATNLPELKVLFKKSKETSDFTLKPKY-DRI--KNLKLQKA 119
G ++RFPRV KIRDDK WK + E+ LF +F +Y D KN KL+K+
Sbjct: 739 GYTLRFPRVLKIRDDKGWKDCCSHEEIIDLFTNYSTNLNFKRDHEYGDGSGGKNKKLKKS 798
Query: 120 R 120
+
Sbjct: 799 K 799
Score = 90 (36.7 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRS 33
E K+DGER+Q+HK G + KYFSR+
Sbjct: 414 EKKFDGERIQIHKDGEQVKYFSRN 437
Score = 47 (21.6 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 98 ETSDFTLKPKYDRIKNLKLQKARCIS 123
ET++ +LK +++I LKL+K I+
Sbjct: 942 ETTEQSLKDSFNQIDKLKLKKQLSIN 967
>RGD|1304639 [details] [associations]
symbol:Lig4 "ligase IV, DNA, ATP-dependent" species:10116
"Rattus norvegicus" [GO:0000012 "single strand break repair"
evidence=IEA;ISO] [GO:0000793 "condensed chromosome"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002328 "pro-B cell differentiation"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003909 "DNA ligase activity" evidence=ISO] [GO:0003910 "DNA
ligase (ATP) activity" evidence=ISO;IDA] [GO:0005524 "ATP binding"
evidence=ISO;IDA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0005886 "plasma membrane" evidence=IEA;ISO]
[GO:0005925 "focal adhesion" evidence=IEA;ISO] [GO:0005958
"DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA;ISO] [GO:0006266 "DNA ligation" evidence=ISO;IDA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA;ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO;IBA] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0008022 "protein
C-terminus binding" evidence=IEA;ISO] [GO:0008283 "cell
proliferation" evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO] [GO:0010212 "response to ionizing radiation"
evidence=ISO] [GO:0010332 "response to gamma radiation"
evidence=IEA;ISO] [GO:0016874 "ligase activity" evidence=ISO]
[GO:0032807 "DNA ligase IV complex" evidence=ISO;IBA] [GO:0033077
"T cell differentiation in thymus" evidence=IEA;ISO] [GO:0033151
"V(D)J recombination" evidence=ISO;IBA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA;ISO] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IEA;ISO] [GO:0035019 "somatic stem
cell maintenance" evidence=IEA;ISO] [GO:0043524 "negative
regulation of neuron apoptotic process" evidence=IEA;ISO]
[GO:0045190 "isotype switching" evidence=IEA;ISO] [GO:0048146
"positive regulation of fibroblast proliferation" evidence=IEA;ISO]
[GO:0050769 "positive regulation of neurogenesis" evidence=IEA;ISO]
[GO:0051102 "DNA ligation involved in DNA recombination"
evidence=IEA;ISO] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA;ISO] [GO:0051276 "chromosome organization"
evidence=IEA;ISO] [GO:0051402 "neuron apoptotic process"
evidence=IEA;ISO] [GO:0070419 "nonhomologous end joining complex"
evidence=ISO] [GO:0071285 "cellular response to lithium ion"
evidence=IEP] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
RGD:1304639 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0003677 GO:GO:0008283 GO:GO:0001701 GO:GO:0051402
GO:GO:0007417 GO:GO:0043524 GO:GO:0005925 GO:GO:0010332
GO:GO:0050769 GO:GO:0033077 GO:GO:0035019 GO:GO:0045190
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793
GO:GO:0048146 EMBL:CH473970 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0010165 GO:GO:0051276 GO:GO:0000012
GO:GO:0005958 GO:GO:0006303 GO:GO:0006289 GO:GO:0033153
GO:GO:0071285 GO:GO:0006273 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
GO:GO:0006297 KO:K10777 OMA:HMCPSTK GO:GO:0032807 CTD:3981
OrthoDB:EOG4Q58NP GO:GO:0033151 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 GeneTree:ENSGT00700000104500 IPI:IPI00202196
RefSeq:NP_001099565.1 UniGene:Rn.219326 Ensembl:ENSRNOT00000019615
GeneID:290907 KEGG:rno:290907 UCSC:RGD:1304639 NextBio:631821
Uniprot:D4A0U6
Length = 911
Score = 96 (38.9 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 38 LEHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKS 96
+E + + +I AE ++++ G ++RFPR+ KIRDDK+W L +L+ L K+
Sbjct: 549 IEPQNSVIVQIKAAEIVPSDMYKT-GSTLRFPRIEKIRDDKEWHDCMTLDDLEQLRGKA 606
Score = 87 (35.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 3 KNERCYSEIKYDGERVQVHKKGNEFKYFSRS 33
K + Y E K DGER+Q+HK G ++YFSR+
Sbjct: 264 KQQSFYIETKLDGERMQMHKDGALYRYFSRN 294
>UNIPROTKB|O67398 [details] [associations]
symbol:lig "Probable DNA ligase" species:224324 "Aquifex
aeolicus VF5" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA]
HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
KO:K10747 OMA:AQVACLY GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
EMBL:AE000657 PIR:D70421 RefSeq:NP_213963.1
ProteinModelPortal:O67398 SMR:O67398 GeneID:1192929
GenomeReviews:AE000657_GR KEGG:aae:aq_1394 PATRIC:20959956
HOGENOM:HOG000036008 ProtClustDB:PRK01109
BioCyc:AAEO224324:GJBH-1004-MONOMER Uniprot:O67398
Length = 584
Score = 105 (42.0 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 6 RCYSEIKYDGERVQVHKKGNEFKYFSRSLKPV 37
+C +E KYDGER+Q H+KG+EF FSR L+ +
Sbjct: 244 KCGAEYKYDGERIQAHRKGDEFYLFSRRLENI 275
Score = 72 (30.4 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 45 VWEISGAEFSQAEIHTAD--------GISIRFPRVT-KIRDDKDWKTATNLPELKVLFKK 95
V EI+GAE + + +HT GI +RFPR T + R DK + AT E+ +++
Sbjct: 517 VLEITGAELTLSPVHTCGWGKVSPNRGIGLRFPRFTGRYRFDKRPEDATTEQEIIEMYRM 576
Query: 96 SKE 98
++
Sbjct: 577 QRK 579
>UNIPROTKB|F1P275 [details] [associations]
symbol:LIG4 "DNA ligase" species:9031 "Gallus gallus"
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] [GO:0051102 "DNA ligation involved in
DNA recombination" evidence=IEA] [GO:0051103 "DNA ligation involved
in DNA repair" evidence=IEA] [GO:0051276 "chromosome organization"
evidence=IEA] [GO:0051402 "neuron apoptotic process" evidence=IEA]
[GO:0000012 "single strand break repair" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032807
"DNA ligase IV complex" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IEA] [GO:0033152
"immunoglobulin V(D)J recombination" evidence=IEA] [GO:0033153 "T
cell receptor V(D)J recombination" evidence=IEA] [GO:0035019
"somatic stem cell maintenance" evidence=IEA] [GO:0043524 "negative
regulation of neuron apoptotic process" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0048146 "positive regulation
of fibroblast proliferation" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0051402 GO:GO:0043524 GO:GO:0005925
GO:GO:0010332 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0000793 GO:GO:0048146 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0010165 GO:GO:0051276 GO:GO:0000012
GO:GO:0005958 GO:GO:0006303 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
GO:GO:0006297 OMA:HMCPSTK GO:GO:0032807 IPI:IPI00651271
GO:GO:0051102 GeneTree:ENSGT00700000104500 EMBL:AADN02029083
Ensembl:ENSGALT00000027230 Uniprot:F1P275
Length = 912
Score = 93 (37.8 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 4 NERCYSEIKYDGERVQVHKKGNEFKYFSRS 33
N+ Y E K DGER+Q+HK G+ +KYFSR+
Sbjct: 270 NQVFYIETKLDGERMQMHKDGDVYKYFSRN 299
Score = 87 (35.7 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 47 EISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKS--KETSDFTL 104
+I AE ++++ D ++RFPR+ KIR+DK+W L L+ L ++ K S
Sbjct: 563 QIKAAEIVNSDMYKTD-CTLRFPRIEKIREDKEWYECMTLDMLEHLRSRAEGKLASKHLY 621
Query: 105 KPKYDRIKNLK 115
+YD + K
Sbjct: 622 IDEYDEPQEKK 632
>UNIPROTKB|Q90YB1 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:9031 "Gallus gallus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA;TAS] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0033151 "V(D)J recombination" evidence=IBA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0070419
"nonhomologous end joining complex" evidence=ISS]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0005694 GO:GO:0005654 GO:GO:0051301
GO:GO:0046872 GO:GO:0003677 GO:GO:0007049 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0006303 GO:GO:0006289 Reactome:REACT_115612
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10777
GO:GO:0032807 EMBL:AB058600 EMBL:AJ720061 IPI:IPI00651271
RefSeq:NP_001025987.1 UniGene:Gga.1352 ProteinModelPortal:Q90YB1
SMR:Q90YB1 STRING:Q90YB1 PRIDE:Q90YB1 GeneID:418764 KEGG:gga:418764
CTD:3981 HOGENOM:HOG000007831 HOVERGEN:HBG005516 InParanoid:Q90YB1
OrthoDB:EOG4Q58NP NextBio:20821908 GO:GO:0070419 GO:GO:0033151
Uniprot:Q90YB1
Length = 912
Score = 93 (37.8 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 4 NERCYSEIKYDGERVQVHKKGNEFKYFSRS 33
N+ Y E K DGER+Q+HK G+ +KYFSR+
Sbjct: 270 NQVFYIETKLDGERMQMHKDGDVYKYFSRN 299
Score = 87 (35.7 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 47 EISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKS--KETSDFTL 104
+I AE ++++ D ++RFPR+ KIR+DK+W L L+ L ++ K S
Sbjct: 563 QIKAAEIVNSDMYKTD-CTLRFPRIEKIREDKEWYECMTLDMLEHLRSRAEGKLASKHLY 621
Query: 105 KPKYDRIKNLK 115
+YD + K
Sbjct: 622 IDEYDEPQEKK 632
>ZFIN|ZDB-GENE-070820-10 [details] [associations]
symbol:lig4 "ligase IV, DNA, ATP-dependent"
species:7955 "Danio rerio" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-070820-10 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:HMCPSTK GeneTree:ENSGT00700000104500
EMBL:BX908780 IPI:IPI00860741 Ensembl:ENSDART00000085648
Bgee:F1Q9E8 Uniprot:F1Q9E8
Length = 909
Score = 91 (37.1 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 38 LEHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKS 96
+E + + ++ AE +E++ D ++RFPR+ +IR+DK+W L +L K+
Sbjct: 554 IEPRNSVILQVKAAEIVTSEMYKTD-CTLRFPRIERIREDKEWHQCMTLDDLNQFRSKA 611
Score = 88 (36.0 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 4 NERCYSEIKYDGERVQVHKKGNEFKYFSRS 33
N Y E K DGER+Q+HK G+ +KY++R+
Sbjct: 270 NRPFYIETKLDGERIQLHKAGDVYKYYTRN 299
>UNIPROTKB|K7ERZ5 [details] [associations]
symbol:LIG3 "DNA ligase 3" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 PROSITE:PS00347
PROSITE:PS00697 PROSITE:PS50064 Gene3D:1.10.3260.10
SUPFAM:SSF117018 EMBL:AC004223 EMBL:AC022903 HGNC:HGNC:6600
Gene3D:3.30.1740.10 Ensembl:ENST00000585941 Uniprot:K7ERZ5
Length = 545
Score = 146 (56.5 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 27/33 (81%), Positives = 29/33 (87%)
Query: 8 YSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEH 40
+SEIKYDGERVQVHK G+ F YFSRSLKPVL H
Sbjct: 513 FSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPH 545
>DICTYBASE|DDB_G0274493 [details] [associations]
symbol:lig1 "DNA ligase I" species:44689
"Dictyostelium discoideum" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IBA] [GO:0003909 "DNA ligase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0051301 "cell division" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 dictyBase:DDB_G0274493
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0051301 GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000151_GR
EMBL:AAFI02000012 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
RefSeq:XP_644124.1 HSSP:P18858 ProteinModelPortal:Q869E1
STRING:Q869E1 EnsemblProtists:DDB0232265 GeneID:8619554
KEGG:ddi:DDB_G0274493 OMA:SERYSIM Uniprot:Q869E1
Length = 1192
Score = 117 (46.2 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 20 VHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTA-----D---GISIRFPRV 71
+++ N+F+ FS S+KP + VWE+ A+ S + +HTA D GI++RFPR
Sbjct: 1093 INQPRNQFR-FSDSIKPDVWFSPSCVWEVLAADLSISPVHTAASGILDPNKGIALRFPRF 1151
Query: 72 TKIRDDKDWKTATNLPELKVLFKKSKETS 100
+IR DK + AT+ ++ +++ K S
Sbjct: 1152 IRIRPDKSPEDATSSDQVVDMYQNQKINS 1180
Score = 57 (25.1 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 10 EIKYDGERVQVHK 22
E KYDGER Q+H+
Sbjct: 842 EFKYDGERAQIHR 854
>UNIPROTKB|Q8TSR7 [details] [associations]
symbol:lig1 "DNA ligase 1" species:188937 "Methanosarcina
acetivorans C2A" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
KO:K10747 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 HSSP:P18858 EMBL:AE010299
RefSeq:NP_615688.1 ProteinModelPortal:Q8TSR7 GeneID:1472620
GenomeReviews:AE010299_GR KEGG:mac:MA0728 OMA:PAFENTT
ProtClustDB:CLSK281490 BioCyc:MACE188937:GI2O-796-MONOMER
Uniprot:Q8TSR7
Length = 580
Score = 97 (39.2 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 9 SEIKYDGERVQVHKKGNEFKYFSRSLKPV 37
+E KYDGERVQ+HK G+E K FSR L+ +
Sbjct: 244 AEEKYDGERVQIHKAGDEIKAFSRRLEDI 272
Score = 69 (29.3 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 45 VWEISGAEFSQAEIHTAD------GISIRFPRVTKIRDDKDWKTATNLPELKVL 92
V E+ G+E + + HTA G+++RFPR +IR D+ AT + E++ L
Sbjct: 523 VIEVLGSEITNSPGHTAGEGEEETGLALRFPRFLRIRYDRAPFDATTVREIRDL 576
>UNIPROTKB|F1RL99 [details] [associations]
symbol:LIG1 "DNA ligase" species:9823 "Sus scrofa"
[GO:0042542 "response to hydrogen peroxide" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 EMBL:FP102640
Ensembl:ENSSSCT00000003469 Uniprot:F1RL99
Length = 915
Score = 97 (39.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 39 EHKAQP--VWEISGAEFSQAEIHTA-----D---GISIRFPRVTKIRDDKDWKTATNLPE 88
+H P VWE+ A+ S + I+ A D GIS+RFPR ++RDDK + AT +
Sbjct: 829 DHWLDPSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVRDDKKPEEATTSAQ 888
Query: 89 LKVLFKKSKE 98
+ L++K +
Sbjct: 889 VACLYRKQSQ 898
Score = 71 (30.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 10 EIKYDGERVQVHK-KGNEFKYFSRS 33
E KYDG+R Q+H +G E K FSR+
Sbjct: 562 EYKYDGQRAQIHVLEGGEVKIFSRN 586
>UNIPROTKB|F5GZ28 [details] [associations]
symbol:LIG1 "DNA ligase" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011466 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HGNC:HGNC:6598 ChiTaRS:LIG1 IPI:IPI01010243
ProteinModelPortal:F5GZ28 SMR:F5GZ28 Ensembl:ENST00000536218
UCSC:uc010xzf.1 ArrayExpress:F5GZ28 Bgee:F5GZ28 Uniprot:F5GZ28
Length = 851
Score = 94 (38.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 39 EHKAQP--VWEISGAEFSQAEIHTA-------D-GISIRFPRVTKIRDDKDWKTATNLPE 88
+H P VWE+ A+ S + I+ A D GIS+RFPR ++R+DK + AT +
Sbjct: 765 DHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQ 824
Query: 89 LKVLFKKSKE 98
+ L++K +
Sbjct: 825 VACLYRKQSQ 834
Score = 72 (30.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 10 EIKYDGERVQVHK-KGNEFKYFSRS 33
E KYDG+R Q+H +G E K FSR+
Sbjct: 498 EYKYDGQRAQIHALEGGEVKIFSRN 522
>UNIPROTKB|B4DTU4 [details] [associations]
symbol:LIG1 "DNA ligase" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011466 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 UniGene:Hs.1770 HGNC:HGNC:6598
HOVERGEN:HBG005514 ChiTaRS:LIG1 EMBL:AK300370 IPI:IPI01011603
SMR:B4DTU4 STRING:B4DTU4 Ensembl:ENST00000427526 UCSC:uc010xzg.1
Uniprot:B4DTU4
Length = 888
Score = 94 (38.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 39 EHKAQP--VWEISGAEFSQAEIHTA-------D-GISIRFPRVTKIRDDKDWKTATNLPE 88
+H P VWE+ A+ S + I+ A D GIS+RFPR ++R+DK + AT +
Sbjct: 802 DHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQ 861
Query: 89 LKVLFKKSKE 98
+ L++K +
Sbjct: 862 VACLYRKQSQ 871
Score = 72 (30.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 10 EIKYDGERVQVHK-KGNEFKYFSRS 33
E KYDG+R Q+H +G E K FSR+
Sbjct: 535 EYKYDGQRAQIHALEGGEVKIFSRN 559
>UNIPROTKB|P18858 [details] [associations]
symbol:LIG1 "DNA ligase 1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0042542 "response to hydrogen peroxide"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA;TAS] [GO:0003909 "DNA
ligase activity" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=TAS]
[GO:0009653 "anatomical structure morphogenesis" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000722
"telomere maintenance via recombination" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005694 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0051301 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0000724 EMBL:CH471177 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0009653 GO:GO:0000084 GO:GO:0000722
Reactome:REACT_383 GO:GO:0006283 DrugBank:DB00290 GO:GO:0032201
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:M36067 EMBL:AF527418
EMBL:AK314210 EMBL:BC108318 IPI:IPI00219841 PIR:A36048
RefSeq:NP_000225.1 UniGene:Hs.1770 PDB:1X9N PDBsum:1X9N
ProteinModelPortal:P18858 SMR:P18858 DIP:DIP-24215N IntAct:P18858
MINT:MINT-141868 STRING:P18858 PhosphoSite:P18858 DMDM:118773
PaxDb:P18858 PeptideAtlas:P18858 PRIDE:P18858
Ensembl:ENST00000263274 GeneID:3978 KEGG:hsa:3978 UCSC:uc002pia.1
CTD:3978 GeneCards:GC19M048618 HGNC:HGNC:6598 HPA:CAB037015
MIM:126391 neXtProt:NX_P18858 PharmGKB:PA30372 HOVERGEN:HBG005514
InParanoid:P18858 OrthoDB:EOG4RBQJ6 PhylomeDB:P18858
BindingDB:P18858 ChEMBL:CHEMBL5694 ChiTaRS:LIG1
EvolutionaryTrace:P18858 GenomeRNAi:3978 NextBio:15592
ArrayExpress:P18858 Bgee:P18858 CleanEx:HS_LIG1
Genevestigator:P18858 GermOnline:ENSG00000105486 GO:GO:0006297
Uniprot:P18858
Length = 919
Score = 94 (38.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 39 EHKAQP--VWEISGAEFSQAEIHTA-------D-GISIRFPRVTKIRDDKDWKTATNLPE 88
+H P VWE+ A+ S + I+ A D GIS+RFPR ++R+DK + AT +
Sbjct: 833 DHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQ 892
Query: 89 LKVLFKKSKE 98
+ L++K +
Sbjct: 893 VACLYRKQSQ 902
Score = 72 (30.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 10 EIKYDGERVQVHK-KGNEFKYFSRS 33
E KYDG+R Q+H +G E K FSR+
Sbjct: 566 EYKYDGQRAQIHALEGGEVKIFSRN 590
>UNIPROTKB|A4IFC8 [details] [associations]
symbol:LIG1 "DNA ligase" species:9913 "Bos taurus"
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006266 "DNA
ligation" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0042542 "response to hydrogen peroxide" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006273
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 CTD:3978
HOVERGEN:HBG005514 EMBL:DAAA02047435 EMBL:BC134518 IPI:IPI00686777
RefSeq:NP_001096018.1 UniGene:Bt.12876 SMR:A4IFC8 STRING:A4IFC8
Ensembl:ENSBTAT00000031920 GeneID:100124507 KEGG:bta:100124507
NextBio:20788728 Uniprot:A4IFC8
Length = 916
Score = 94 (38.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 39 EHKAQP--VWEISGAEFSQAEIHTA-----D---GISIRFPRVTKIRDDKDWKTATNLPE 88
+H P VWE+ A+ S + I+ A D GIS+RFPR ++R+DK + AT +
Sbjct: 830 DHWLDPSDVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPEQATTSAQ 889
Query: 89 LKVLFKKSKE 98
+ L+KK +
Sbjct: 890 VAGLYKKQSQ 899
Score = 71 (30.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 10 EIKYDGERVQVHK-KGNEFKYFSRS 33
E KYDG+R Q+H +G E K FSR+
Sbjct: 563 EYKYDGQRAQIHVLEGGEVKIFSRN 587
>UNIPROTKB|F1M624 [details] [associations]
symbol:Lig1 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 RGD:621424
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 IPI:IPI00950231
Ensembl:ENSRNOT00000019799 ArrayExpress:F1M624 Uniprot:F1M624
Length = 912
Score = 93 (37.8 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 39 EHKAQP--VWEISGAEFSQAEIHTA-----D---GISIRFPRVTKIRDDKDWKTATNLPE 88
+H P VWE+ A+ S + I+ A D GIS+RFPR ++R+DK + AT +
Sbjct: 827 DHWLDPSVVWEVKCADLSLSPIYPAARGLVDKEKGISLRFPRFIRVREDKQPEQATTSDQ 886
Query: 89 LKVLFKKSKE 98
+ L++K +
Sbjct: 887 VASLYRKQSQ 896
Score = 71 (30.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 10 EIKYDGERVQVHK-KGNEFKYFSRS 33
E KYDG+R Q+H +G E K FSR+
Sbjct: 560 EYKYDGQRAQIHVLEGGEVKIFSRN 584
>UNIPROTKB|F1M8E6 [details] [associations]
symbol:Lig1 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 RGD:621424
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 IPI:IPI00553920 Ensembl:ENSRNOT00000064178
ArrayExpress:F1M8E6 Uniprot:F1M8E6
Length = 913
Score = 93 (37.8 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 39 EHKAQP--VWEISGAEFSQAEIHTA-----D---GISIRFPRVTKIRDDKDWKTATNLPE 88
+H P VWE+ A+ S + I+ A D GIS+RFPR ++R+DK + AT +
Sbjct: 828 DHWLDPSVVWEVKCADLSLSPIYPAARGLVDKEKGISLRFPRFIRVREDKQPEQATTSDQ 887
Query: 89 LKVLFKKSKE 98
+ L++K +
Sbjct: 888 VASLYRKQSQ 897
Score = 71 (30.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 10 EIKYDGERVQVHK-KGNEFKYFSRS 33
E KYDG+R Q+H +G E K FSR+
Sbjct: 561 EYKYDGQRAQIHVLEGGEVKIFSRN 585
>UNIPROTKB|A8JH25 [details] [associations]
symbol:LIG1 "DNA ligase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
EMBL:DS496188 RefSeq:XP_001702891.1 UniGene:Cre.3193
ProteinModelPortal:A8JH25 STRING:A8JH25 EnsemblPlants:EDO96848
GeneID:5728431 KEGG:cre:CHLREDRAFT_133143 ProtClustDB:CLSN2924027
BioCyc:CHLAMY:CHLREDRAFT_133143-MONOMER Uniprot:A8JH25
Length = 813
Score = 103 (41.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 30 FSRSLKPVLEHKAQPVWEISGAEFSQAEIHTA-----D---GISIRFPRVTKIRDDKDWK 81
+ SL P + A VWE+ A+ S + H A D GISIRFPR+ ++RDDK +
Sbjct: 727 WDESLVPDVWFDAAVVWEVKAADLSISPRHKAALGLVDPTKGISIRFPRLIRVRDDKSPE 786
Query: 82 TATNLPELKVLFK 94
AT+ ++ +F+
Sbjct: 787 DATSAAQVADMFR 799
Score = 59 (25.8 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 10 EIKYDGERVQVH--KKGNEFKYFSRS 33
E KYDGER QVH G FSR+
Sbjct: 468 EYKYDGERAQVHVLDGGKTVHIFSRN 493
>UNIPROTKB|F6URE1 [details] [associations]
symbol:LIG1 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 OMA:AQVACLY GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
Ensembl:ENSCAFT00000006495 EMBL:AAEX03000828 Uniprot:F6URE1
Length = 911
Score = 89 (36.4 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 39 EHKAQP--VWEISGAEFSQAEIHTA-----DG---ISIRFPRVTKIRDDKDWKTATNLPE 88
+H P VWE+ A+ S + I+ A DG IS+RFPR ++R+DK + AT +
Sbjct: 826 DHWLDPSAVWEVKCADLSLSPIYPAARGLVDGEKGISLRFPRFIRVREDKKPEEATTSGQ 885
Query: 89 LKVLFKKSKE 98
+ L+ K +
Sbjct: 886 VACLYMKQSQ 895
Score = 71 (30.1 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 10 EIKYDGERVQVHK-KGNEFKYFSRS 33
E KYDG+R Q+H +G E K FSR+
Sbjct: 559 EYKYDGQRAQIHVLEGGEVKIFSRN 583
>MGI|MGI:101789 [details] [associations]
symbol:Lig1 "ligase I, DNA, ATP-dependent" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IBA;IDA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006260
"DNA replication" evidence=IMP] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006281 "DNA repair" evidence=ISO;IMP] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0042542 "response to hydrogen peroxide"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 MGI:MGI:101789
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0051301 GO:GO:0046872 GO:GO:0003677 GO:GO:0007049
GO:GO:0006310 GO:GO:0042542 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006303 GO:GO:0006273 eggNOG:COG1793
KO:K10747 GO:GO:0003910 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 CTD:3978 HOVERGEN:HBG005514 EMBL:U04674
EMBL:U19604 IPI:IPI00473314 PIR:I48921 RefSeq:NP_034845.2
UniGene:Mm.288179 UniGene:Mm.421129 ProteinModelPortal:P37913
SMR:P37913 STRING:P37913 PhosphoSite:P37913 PaxDb:P37913
PRIDE:P37913 GeneID:16881 KEGG:mmu:16881 InParanoid:P37913
NextBio:290882 CleanEx:MM_LIG1 Genevestigator:P37913
GermOnline:ENSMUSG00000056394 Uniprot:P37913
Length = 916
Score = 89 (36.4 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 39 EHKAQP--VWEISGAEFSQAEIHTA-----D---GISIRFPRVTKIRDDKDWKTATNLPE 88
+H P VWE+ A+ S + I+ A D GIS+RFPR ++R DK + AT +
Sbjct: 831 DHWLDPSIVWEVKCADLSLSPIYPAARGLVDKEKGISLRFPRFIRVRKDKQPEQATTSNQ 890
Query: 89 LKVLFKKSKE 98
+ L++K +
Sbjct: 891 VASLYRKQSQ 900
Score = 71 (30.1 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 10 EIKYDGERVQVHK-KGNEFKYFSRS 33
E KYDG+R Q+H +G E K FSR+
Sbjct: 564 EYKYDGQRAQIHVLEGGEVKIFSRN 588
>UNIPROTKB|E2QTV4 [details] [associations]
symbol:LIG1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 Ensembl:ENSCAFT00000006495 Uniprot:E2QTV4
Length = 919
Score = 89 (36.4 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 39 EHKAQP--VWEISGAEFSQAEIHTA-----DG---ISIRFPRVTKIRDDKDWKTATNLPE 88
+H P VWE+ A+ S + I+ A DG IS+RFPR ++R+DK + AT +
Sbjct: 834 DHWLDPSAVWEVKCADLSLSPIYPAARGLVDGEKGISLRFPRFIRVREDKKPEEATTSGQ 893
Query: 89 LKVLFKKSKE 98
+ L+ K +
Sbjct: 894 VACLYMKQSQ 903
Score = 71 (30.1 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 10 EIKYDGERVQVHK-KGNEFKYFSRS 33
E KYDG+R Q+H +G E K FSR+
Sbjct: 567 EYKYDGQRAQIHVLEGGEVKIFSRN 591
>UNIPROTKB|Q0JKB6 [details] [associations]
symbol:Os01g0685500 "Os01g0685500 protein" species:39947
"Oryza sativa Japonica Group" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA]
InterPro:IPR012309 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04679
PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AP008207 GO:GO:0006289 GO:GO:0006273 KO:K10747 GO:GO:0003910
RefSeq:NP_001043898.1 UniGene:Os.55232 ProteinModelPortal:Q0JKB6
GeneID:4324149 KEGG:osa:4324149 Gramene:Q0JKB6
ProtClustDB:CLSN2691710 Uniprot:Q0JKB6
Length = 318
Score = 112 (44.5 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 37/112 (33%), Positives = 57/112 (50%)
Query: 4 NERCYSEIK--YDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTA 61
++ Y E+K Y G+R+ + KK Y+ P L A+ VWEI GA+ + + +H A
Sbjct: 205 SDEFYKEMKEFYSGDRI-LPKKP---VYYKTDELPELWFSAEQVWEIRGADLTLSPVHHA 260
Query: 62 D--------GISIRFPRVTKIRDDK---DWKTATNLPEL-KVLFKKSKETSD 101
GIS+R PR + R D+ D TAT++ L K +K + +SD
Sbjct: 261 AIGLVHPSRGISVRMPRYIRSRPDRSPEDCSTATDVASLFKAQTRKMEVSSD 312
>POMBASE|SPBC713.06 [details] [associations]
symbol:adl1 "DNA ligase (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0071897 "DNA biosynthetic process" evidence=IC]
InterPro:IPR000014 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 SMART:SM00091 PomBase:SPBC713.06
GO:GO:0005524 GO:GO:0005634 GO:GO:0007165 GO:GO:0003677
GO:GO:0006260 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HSSP:P18858 RefSeq:NP_595345.1
ProteinModelPortal:Q9C1W9 STRING:Q9C1W9 EnsemblFungi:SPBC713.06.1
GeneID:2541111 KEGG:spo:SPBC713.06 OMA:GAVKTTM OrthoDB:EOG4SFDF2
NextBio:20802224 GO:GO:0071897 Uniprot:Q9C1W9
Length = 774
Score = 86 (35.3 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 36 PVLEHKAQPVWEISGAEFSQAEIHTA------D--GISIRFPRVTKIRDDKDWKTATNLP 87
P + Q VWEI GA+ + + + A D G+SIRFPR ++R DK + A+
Sbjct: 703 PQIYFAPQEVWEIKGAQITSSPAYKAALGLIQDDRGLSIRFPRFIRVRSDKGPEDASTNS 762
Query: 88 ELKVLFKKSKET 99
L ++ K T
Sbjct: 763 ILADMYMKQLNT 774
Score = 69 (29.3 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 10 EIKYDGERVQVH--KKGNEFKYFSRSLKPV 37
E KYDG+R Q+H + GN K FSR L+ +
Sbjct: 431 EFKYDGQRAQIHCDRLGN-IKIFSRHLEEI 459
>RGD|621424 [details] [associations]
symbol:Lig1 "ligase I, DNA, ATP-dependent" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003909
"DNA ligase activity" evidence=ISO;IDA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IBA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006260 "DNA replication" evidence=ISO]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=ISO;IDA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0042542 "response to hydrogen peroxide" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=ISO] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 RGD:621424 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0051301
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0007049
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HOVERGEN:HBG005514 OrthoDB:EOG4RBQJ6
EMBL:AF276774 IPI:IPI00200072 UniGene:Rn.20467
ProteinModelPortal:Q9JHY8 SMR:Q9JHY8 STRING:Q9JHY8
PhosphoSite:Q9JHY8 PRIDE:Q9JHY8 UCSC:RGD:621424 InParanoid:Q9JHY8
NextBio:614997 ArrayExpress:Q9JHY8 Genevestigator:Q9JHY8
GermOnline:ENSRNOG00000014193 Uniprot:Q9JHY8
Length = 918
Score = 88 (36.0 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 45 VWEISGAEFSQAEIHTA-----D---GISIRFPRVTKIRDDKDWKTATNLPELKVLFKKS 96
VWE+ A+ + + I+ A D GIS+RFPR ++R+DK + AT ++ L++K
Sbjct: 841 VWEVKCADLTLSPIYRAARGMVDKEKGISLRFPRFIRVREDKQPEQATTSDQVASLYRKQ 900
Query: 97 KE 98
+
Sbjct: 901 SQ 902
Score = 62 (26.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 10 EIKYDGERVQVHK-KGNEFKYFSRS 33
E KY G+R Q+H +G E K FSR+
Sbjct: 566 EYKYYGQRAQIHVLEGGEVKIFSRN 590
>TAIR|locus:2175544 [details] [associations]
symbol:ATLIG4 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0010165 "response to
X-ray" evidence=IMP] [GO:0015074 "DNA integration" evidence=IMP]
[GO:0000723 "telomere maintenance" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009506 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0048046 GO:GO:0006260 EMBL:AB023042 GO:GO:0006310
GO:GO:0006302 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
TIGRFAMs:TIGR00574 EMBL:AF233527 IPI:IPI00524567 RefSeq:NP_568851.2
UniGene:At.49182 UniGene:At.69713 ProteinModelPortal:Q9LL84
SMR:Q9LL84 IntAct:Q9LL84 STRING:Q9LL84 PaxDb:Q9LL84 PRIDE:Q9LL84
EnsemblPlants:AT5G57160.1 GeneID:835822 KEGG:ath:AT5G57160
GeneFarm:4927 TAIR:At5g57160 HOGENOM:HOG000083793 InParanoid:Q9LL84
KO:K10777 OMA:HMCPSTK PhylomeDB:Q9LL84 ProtClustDB:CLSN2680547
Genevestigator:Q9LL84 GermOnline:AT5G57160 GO:GO:0032807
Uniprot:Q9LL84
Length = 1219
Score = 87 (35.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 9 SEIKYDGERVQVHKKGNEFKYFSRSLKPVLEH 40
+E K+DG+R+Q+HK G + YFSR+ L+H
Sbjct: 250 AECKFDGDRIQIHKNGTDIHYFSRNF---LDH 278
Score = 68 (29.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 55 QAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKSKETS 100
++E+ A S+RFPR+ K+R DK W ++ L S T+
Sbjct: 563 RSEVFVAP-YSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTT 607
>UNIPROTKB|G4MQC2 [details] [associations]
symbol:MGG_10627 "ATP-dependent DNA ligase
domain-containing protein" species:242507 "Magnaporthe oryzae
70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR012308 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675
PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677 GO:GO:0006281
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:CM001231 GO:GO:0003910 RefSeq:XP_003710720.1
ProteinModelPortal:G4MQC2 EnsemblFungi:MGG_10627T0 GeneID:2682230
KEGG:mgr:MGG_10627 Uniprot:G4MQC2
Length = 970
Score = 93 (37.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 35 KPVLEHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFK 94
+P + PV+++ F++ E + A ++RFP V+KI D+ W+ A +L EL+ + K
Sbjct: 575 RPSIIFPEPPVFDLRCFSFTR-EANLAKHYTMRFPMVSKIHCDRTWRDAVSLDELQEMAK 633
Query: 95 KSKETS 100
K +S
Sbjct: 634 KELNSS 639
Score = 44 (20.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 10 EIKYDGERVQVH---KKG-NEFKYFSRSLK 35
E K DGE Q+H KG N + FS+S K
Sbjct: 283 EKKMDGEYCQIHVDISKGPNCIQIFSKSGK 312
>UNIPROTKB|Q8TMT1 [details] [associations]
symbol:lig2 "DNA ligase 2" species:188937 "Methanosarcina
acetivorans C2A" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
KO:K10747 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:AE010299
GenomeReviews:AE010299_GR RefSeq:NP_617472.1
ProteinModelPortal:Q8TMT1 GeneID:1474460 KEGG:mac:MA2571
OMA:ARVQVHK ProtClustDB:CLSK568925
BioCyc:MACE188937:GI2O-2632-MONOMER Uniprot:Q8TMT1
Length = 568
Score = 82 (33.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 10 EIKYDGERVQVHKKGNEFKYFSRSLKPV 37
E K+DG RVQ+HK GN FSR L+ V
Sbjct: 254 EWKFDGARVQIHKNGNSVTLFSRKLENV 281
Score = 70 (29.7 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 45 VWEISGAEFSQAEIHTADGISIRFPRVTKIRDDKDWKTATNLPEL 89
V EI+ E ++ + + G ++RFPR +IRDDKD + A + +
Sbjct: 514 VLEIAFEEIQKSPNYDS-GFALRFPRFIRIRDDKDPEEADTIQRI 557
>UNIPROTKB|H9L029 [details] [associations]
symbol:LIG1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
EMBL:AADN02065151 EMBL:AADN02065152 EMBL:AADN02065153
Ensembl:ENSGALT00000021833 Uniprot:H9L029
Length = 654
Score = 87 (35.7 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 42 AQPVWEISGAEFSQAEIHTA-------D-GISIRFPRVTKIRDDKDWKTATNLPELKVLF 93
A VWE+ + S + ++ A D GIS+RFPR ++R DK + AT+ ++ L+
Sbjct: 578 AVQVWEVKCGDLSISPVYRAAVGLVDEDKGISLRFPRFLRVRGDKKPEEATSSTQVAELY 637
Query: 94 KKSKE 98
KK ++
Sbjct: 638 KKQQQ 642
Score = 57 (25.1 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 10 EIKYDGERVQVH--KKGNEFKYFSRS 33
E KYDGER Q+H + G F Y SR+
Sbjct: 306 EYKYDGERTQIHVLESGAVFIY-SRN 330
>UNIPROTKB|H9L3I6 [details] [associations]
symbol:LIG1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0042542 "response to hydrogen peroxide"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
EMBL:AADN02065151 EMBL:AADN02065152 EMBL:AADN02065153
Ensembl:ENSGALT00000040526 Uniprot:H9L3I6
Length = 661
Score = 87 (35.7 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 42 AQPVWEISGAEFSQAEIHTA-------D-GISIRFPRVTKIRDDKDWKTATNLPELKVLF 93
A VWE+ + S + ++ A D GIS+RFPR ++R DK + AT+ ++ L+
Sbjct: 582 AVQVWEVKCGDLSISPVYRAAVGLVDEDKGISLRFPRFLRVRGDKKPEEATSSTQVAELY 641
Query: 94 KKSKE 98
KK ++
Sbjct: 642 KKQQQ 646
Score = 57 (25.1 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 10 EIKYDGERVQVH--KKGNEFKYFSRS 33
E KYDGER Q+H + G F Y SR+
Sbjct: 310 EYKYDGERTQIHVLESGAVFIY-SRN 334
>FB|FBgn0262619 [details] [associations]
symbol:DNA-ligI "DNA ligase I" species:7227 "Drosophila
melanogaster" [GO:0003910 "DNA ligase (ATP) activity"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0043596 "nuclear replication
fork" evidence=IDA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 EMBL:AE013599 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0051301 GO:GO:0003677
GO:GO:0006260 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1793 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
HSSP:P18858 EMBL:AY051939 EMBL:BT016103 RefSeq:NP_611843.2
UniGene:Dm.19278 ProteinModelPortal:Q9W1H4 SMR:Q9W1H4 IntAct:Q9W1H4
MINT:MINT-920323 STRING:Q9W1H4 PaxDb:Q9W1H4
EnsemblMetazoa:FBtr0072132 GeneID:37791 KEGG:dme:Dmel_CG5602
UCSC:CG5602-RA CTD:37791 FlyBase:FBgn0262619 InParanoid:Q9W1H4
OrthoDB:EOG48W9H3 PhylomeDB:Q9W1H4 GenomeRNAi:37791 NextBio:805425
Bgee:Q9W1H4 Uniprot:Q9W1H4
Length = 747
Score = 107 (42.7 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 33/108 (30%), Positives = 59/108 (54%)
Query: 4 NERCYSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPV--WEISGAEFSQAEIHTA 61
+E + ++ G+ V K + ++Y SL+P +H +PV WE+ A+ S + IH A
Sbjct: 629 DEDLQTHSEFLGKHVTSAAK-SYYRY-DPSLEP--DHWFEPVQVWEVKCADLSLSPIHRA 684
Query: 62 -----DG---ISIRFPRVTKIRDDKDWKTATNLPELKVLFKKSKETSD 101
DG IS+RFPR +IRDDK+ + AT+ ++ +++ + +
Sbjct: 685 AIGIVDGERGISLRFPRFIRIRDDKNSENATDANQVAHMYQSQDQVKN 732
>UNIPROTKB|Q7RPC6 [details] [associations]
symbol:PY01533 "DNA ligase" species:73239 "Plasmodium
yoelii yoelii" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 EMBL:AABL01000407 RefSeq:XP_729309.1
ProteinModelPortal:Q7RPC6 STRING:Q7RPC6 GeneID:3801864
KEGG:pyo:PY01533 EuPathDB:PlasmoDB:PY01533 Uniprot:Q7RPC6
Length = 826
Score = 107 (42.7 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 32/95 (33%), Positives = 50/95 (52%)
Query: 25 NEFKYF--SRSLKPVLEHKAQPVWEISGAEFSQAEIHTA------D--GISIRFPRVTKI 74
N+ Y+ S L P + A VWEI A+ S + +HTA D GI +RFPR ++
Sbjct: 727 NKKSYYEVSDKLNPDVWFDAHYVWEIKAADLSLSPVHTAAIGVYSDDKGIGLRFPRFLRL 786
Query: 75 RDDKDWKTATNLPELKVLFKKSKETSDFTLKPKYD 109
RDDK+ + AT ++ V F +++ S+ Y+
Sbjct: 787 RDDKNPEQATTAQQI-VEFYEAQFASNKNKNNNYN 820
>UNIPROTKB|G4NHG0 [details] [associations]
symbol:MGG_03854 "DNA ligase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CM001236 KO:K10747
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 RefSeq:XP_003720037.1 ProteinModelPortal:G4NHG0
EnsemblFungi:MGG_03854T0 GeneID:2677295 KEGG:mgr:MGG_03854
Uniprot:G4NHG0
Length = 859
Score = 107 (42.7 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 32/103 (31%), Positives = 54/103 (52%)
Query: 3 KNERCYSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTA- 61
+N Y++ + DGER + F +S +P + + Q VWE++ A+ + + +TA
Sbjct: 742 ENRAFYNDGEEDGERQNTRARRPAFVEYSGP-EPDVWFEPQEVWEMAFADITLSPTYTAA 800
Query: 62 -----D--GISIRFPRVTKIRDDKDWKTATNLPELKVLFKKSK 97
D G+S+RFPR K R+DK A++ L LF+K +
Sbjct: 801 IGLISDERGLSLRFPRFLKKREDKSIDEASSGEFLATLFRKQE 843
>UNIPROTKB|Q5R6L3 [details] [associations]
symbol:DNL4 "DNA ligase 4" species:9601 "Pongo abelii"
[GO:0070419 "nonhomologous end joining complex" evidence=ISS]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0007049 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10777
CTD:3981 HOVERGEN:HBG005516 GO:GO:0070419 EMBL:CR860475
RefSeq:NP_001126522.1 UniGene:Pab.18738 ProteinModelPortal:Q5R6L3
SMR:Q5R6L3 PRIDE:Q5R6L3 GeneID:100173511 KEGG:pon:100173511
InParanoid:Q5R6L3 Uniprot:Q5R6L3
Length = 911
Score = 100 (40.3 bits), Expect = 0.00043, P = 0.00043
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 21 HKKGNEFKYFSRSLKP--VLEHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDK 78
HKK + KP +E + +I AE ++++ G ++RFPR+ KIRDDK
Sbjct: 530 HKKAPPSSILCGTEKPEVYIEPCNSVIVQIKAAEIVPSDMYKT-GCTLRFPRIEKIRDDK 588
Query: 79 DWKTATNLPELKVLFKKS 96
+W L +L+ L K+
Sbjct: 589 EWHECMTLDDLEQLRGKA 606
Score = 95 (38.5 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 3 KNERCYSEIKYDGERVQVHKKGNEFKYFSRS 33
K++ Y E K DGER+Q+HK G+ +KYFSR+
Sbjct: 264 KHQSFYIETKLDGERMQMHKDGDVYKYFSRN 294
Score = 35 (17.4 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 71 VTKIRDDKDWKTATNLPELKVLFKKSKETSDFTLKPKYDRIKNL 114
+ ++ +D D +T + VL +K+ TL+ +Y+ + ++
Sbjct: 351 IKRMVEDSDLQTCYCV--FDVLMVNNKKLGHETLRKRYEILSSI 392
Score = 33 (16.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 58 IHTADGISIRFPRVTKIRDDKDWKTATNLPELKVLFKKSKETSDFTLKPKYDRIKNLK 115
IH F R D + T+L +LK +F K +++ T + I +L+
Sbjct: 744 IHMCPSTKEHFAREYDCYGDS-YFVDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLE 800
>UNIPROTKB|P49917 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:9606 "Homo sapiens"
[GO:0007049 "cell cycle" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA] [GO:0071285 "cellular response
to lithium ion" evidence=IEA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016874 "ligase
activity" evidence=IDA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IDA] [GO:0000012 "single strand break
repair" evidence=IDA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IDA] [GO:0006266 "DNA ligation" evidence=IDA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP;IDA;TAS] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0032807 "DNA ligase IV complex" evidence=IMP]
[GO:0002328 "pro-B cell differentiation" evidence=ISS] [GO:0005958
"DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=ISS;IDA] [GO:0006302 "double-strand break repair"
evidence=ISS;IDA;TAS] [GO:0007417 "central nervous system
development" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0010332 "response to gamma radiation"
evidence=ISS] [GO:0033153 "T cell receptor V(D)J recombination"
evidence=ISS] [GO:0035019 "somatic stem cell maintenance"
evidence=ISS] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=ISS] [GO:0045190 "isotype switching"
evidence=ISS] [GO:0050769 "positive regulation of neurogenesis"
evidence=ISS] [GO:0051102 "DNA ligation involved in DNA
recombination" evidence=ISS] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=ISS;IDA] [GO:0051276 "chromosome organization"
evidence=ISS] [GO:0001701 "in utero embryonic development"
evidence=ISS] [GO:0033077 "T cell differentiation in thymus"
evidence=ISS] [GO:0048146 "positive regulation of fibroblast
proliferation" evidence=ISS] [GO:0051402 "neuron apoptotic process"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=IDA]
[GO:0003909 "DNA ligase activity" evidence=IDA;TAS] [GO:0008022
"protein C-terminus binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0010165 "response to X-ray" evidence=IMP]
[GO:0070419 "nonhomologous end joining complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005925 "focal adhesion" evidence=IDA] Reactome:REACT_216
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0016032 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0008283 GO:GO:0001701 GO:GO:0051402
GO:GO:0007417 GO:GO:0043524 GO:GO:0005925 GO:GO:0010332
EMBL:AL157762 GO:GO:0007049 GO:GO:0050769 GO:GO:0033077
GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165 GO:GO:0051276
GO:GO:0000012 GO:GO:0005958 GO:GO:0006303 GO:GO:0033153
GO:GO:0071285 PDB:4HTP PDBsum:4HTP MIM:602450 Orphanet:39041
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
GO:GO:0006297 BRENDA:6.5.1.1 KO:K10777 OMA:HMCPSTK GO:GO:0032807
CTD:3981 HOGENOM:HOG000007831 HOVERGEN:HBG005516 OrthoDB:EOG4Q58NP
EMBL:X83441 EMBL:AF479264 EMBL:BC037491 IPI:IPI00217669 PIR:I37079
RefSeq:NP_001091738.1 RefSeq:NP_002303.2 RefSeq:NP_996820.1
UniGene:Hs.166091 PDB:1IK9 PDB:2E2W PDB:3II6 PDB:3VNN PDB:4HTO
PDBsum:1IK9 PDBsum:2E2W PDBsum:3II6 PDBsum:3VNN PDBsum:4HTO
ProteinModelPortal:P49917 SMR:P49917 DIP:DIP-37958N IntAct:P49917
MINT:MINT-3018022 STRING:P49917 PhosphoSite:P49917 DMDM:88911290
PaxDb:P49917 PRIDE:P49917 DNASU:3981 Ensembl:ENST00000356922
Ensembl:ENST00000405925 Ensembl:ENST00000442234 GeneID:3981
KEGG:hsa:3981 UCSC:uc001vqn.3 GeneCards:GC13M108859 HGNC:HGNC:6601
HPA:HPA001334 MIM:601837 MIM:606593 neXtProt:NX_P49917
Orphanet:99812 PharmGKB:PA30375 InParanoid:P49917 PhylomeDB:P49917
ChiTaRS:LIG4 EvolutionaryTrace:P49917 GenomeRNAi:3981 NextBio:15604
Bgee:P49917 CleanEx:HS_LIG4 Genevestigator:P49917
GermOnline:ENSG00000174405 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 Uniprot:P49917
Length = 911
Score = 97 (39.2 bits), Expect = 0.00091, P = 0.00091
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 21 HKKGNEFKYFSRSLKP--VLEHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDK 78
H+K + KP +E + +I AE ++++ G ++RFPR+ KIRDDK
Sbjct: 530 HRKAPPSSILCGTEKPEVYIEPCNSVIVQIKAAEIVPSDMYKT-GCTLRFPRIEKIRDDK 588
Query: 79 DWKTATNLPELKVLFKKS 96
+W L +L+ L K+
Sbjct: 589 EWHECMTLDDLEQLRGKA 606
Score = 95 (38.5 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 3 KNERCYSEIKYDGERVQVHKKGNEFKYFSRS 33
K++ Y E K DGER+Q+HK G+ +KYFSR+
Sbjct: 264 KHQSFYIETKLDGERMQMHKDGDVYKYFSRN 294
Score = 35 (17.4 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 71 VTKIRDDKDWKTATNLPELKVLFKKSKETSDFTLKPKYDRIKNL 114
+ ++ +D D +T + VL +K+ TL+ +Y+ + ++
Sbjct: 351 IKRMVEDSDLQTCYCV--FDVLMVNNKKLGHETLRKRYEILSSI 392
>UNIPROTKB|F1RLP1 [details] [associations]
symbol:LIG4 "DNA ligase" species:9823 "Sus scrofa"
[GO:0051402 "neuron apoptotic process" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0051102 "DNA ligation
involved in DNA recombination" evidence=IEA] [GO:0050769 "positive
regulation of neurogenesis" evidence=IEA] [GO:0048146 "positive
regulation of fibroblast proliferation" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0043524 "negative regulation
of neuron apoptotic process" evidence=IEA] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IEA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IEA] [GO:0032807 "DNA ligase IV
complex" evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007417 "central nervous
system development" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0001701 GO:GO:0051402 GO:GO:0007417
GO:GO:0043524 GO:GO:0005925 GO:GO:0010332 GO:GO:0050769
GO:GO:0033077 GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
GO:GO:0051276 GO:GO:0000012 GO:GO:0005958 GO:GO:0006303
GO:GO:0033153 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GO:GO:0006297 KO:K10777
OMA:HMCPSTK GO:GO:0032807 GO:GO:0051102 GO:GO:0033152 GO:GO:0002328
GeneTree:ENSGT00700000104500 EMBL:CU019584 RefSeq:XP_003131137.2
ProteinModelPortal:F1RLP1 Ensembl:ENSSSCT00000010458
GeneID:100155891 KEGG:ssc:100155891 Uniprot:F1RLP1
Length = 910
Score = 91 (37.1 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3 KNERCYSEIKYDGERVQVHKKGNEFKYFSRS 33
K++ Y E K DGER+Q+HK G+ ++YFSR+
Sbjct: 264 KHQSFYIETKLDGERMQMHKDGDVYQYFSRN 294
Score = 39 (18.8 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 71 VTKIRDDKDWKTATNLPELKVLFKKSKETSDFTLKPKYDRIKNL 114
+ ++ +D D +T + VL SK+ TLK +Y+ + ++
Sbjct: 351 IKRMVEDSDLQTCYCV--FDVLMVNSKKLGHETLKNRYEILSSV 392
>TAIR|locus:2199953 [details] [associations]
symbol:LIG1 "DNA ligase 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA
ligase activity" evidence=IEA] [GO:0003910 "DNA ligase (ATP)
activity" evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0000012 "single strand break
repair" evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0016458 "gene
silencing" evidence=RCA] [GO:0016570 "histone modification"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0007049 GO:GO:0006310 GO:GO:0006302
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000012
EMBL:AC011438 EMBL:AC026875 EMBL:X97924 EMBL:AK117238 EMBL:BT005964
EMBL:AK222166 IPI:IPI00535474 PIR:S71278 RefSeq:NP_172293.2
UniGene:At.36 ProteinModelPortal:Q42572 SMR:Q42572 STRING:Q42572
PaxDb:Q42572 PRIDE:Q42572 EnsemblPlants:AT1G08130.1 GeneID:837333
KEGG:ath:AT1G08130 TAIR:At1g08130 eggNOG:COG1793
HOGENOM:HOG000036006 InParanoid:Q42572 KO:K10747 OMA:AQVACLY
PhylomeDB:Q42572 ProtClustDB:PLN03113 Genevestigator:Q42572
GermOnline:AT1G08130 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
Uniprot:Q42572
Length = 790
Score = 103 (41.3 bits), Expect = 0.00018, P = 0.00018
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 17 RVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTA-------D-GISIRF 68
R QV ++ SL P + + VWE+ A+ + + +H A D GIS+RF
Sbjct: 689 RSQVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGISLRF 748
Query: 69 PRVTKIRDDKDWKTATNLPELKVLFKKSK 97
PR+ ++R+DK + AT+ ++ L++ K
Sbjct: 749 PRLLRVREDKKPEEATSSEQIADLYQAQK 777
>UNIPROTKB|E2R0G7 [details] [associations]
symbol:LIG4 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0051402 "neuron apoptotic process" evidence=IEA]
[GO:0051276 "chromosome organization" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0051102
"DNA ligation involved in DNA recombination" evidence=IEA]
[GO:0050769 "positive regulation of neurogenesis" evidence=IEA]
[GO:0048146 "positive regulation of fibroblast proliferation"
evidence=IEA] [GO:0045190 "isotype switching" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0035019 "somatic stem cell maintenance"
evidence=IEA] [GO:0033153 "T cell receptor V(D)J recombination"
evidence=IEA] [GO:0033152 "immunoglobulin V(D)J recombination"
evidence=IEA] [GO:0033077 "T cell differentiation in thymus"
evidence=IEA] [GO:0032807 "DNA ligase IV complex" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007417 "central nervous system development"
evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0001701 GO:GO:0051402 GO:GO:0007417
GO:GO:0043524 GO:GO:0005925 GO:GO:0010332 GO:GO:0050769
GO:GO:0033077 GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
GO:GO:0051276 GO:GO:0000012 GO:GO:0005958 GO:GO:0006303
GO:GO:0033153 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GO:GO:0006297 KO:K10777
OMA:HMCPSTK GO:GO:0032807 CTD:3981 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 GeneTree:ENSGT00700000104500 EMBL:AAEX03013370
RefSeq:XP_542663.2 ProteinModelPortal:E2R0G7
Ensembl:ENSCAFT00000009725 GeneID:485544 KEGG:cfa:485544
NextBio:20859524 Uniprot:E2R0G7
Length = 911
Score = 91 (37.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 3 KNERCYSEIKYDGERVQVHKKGNEFKYFSRS 33
K++ Y E K DGER+Q+HK G+ ++YFSR+
Sbjct: 264 KHQSFYIETKLDGERMQMHKDGDVYQYFSRN 294
Score = 35 (17.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 71 VTKIRDDKDWKTATNLPELKVLFKKSKETSDFTLKPKYD 109
+ ++ +D D +T + VL +K+ TLK +Y+
Sbjct: 351 IKRMVEDSDLQTCYCV--FDVLMVNNKKLGRETLKKRYE 387
>MGI|MGI:1335098 [details] [associations]
symbol:Lig4 "ligase IV, DNA, ATP-dependent" species:10090
"Mus musculus" [GO:0000012 "single strand break repair"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0001701 "in
utero embryonic development" evidence=IMP] [GO:0002328 "pro-B cell
differentiation" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003909 "DNA ligase activity" evidence=ISO]
[GO:0003910 "DNA ligase (ATP) activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO;IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005958 "DNA-dependent
protein kinase-DNA ligase 4 complex" evidence=ISO;IDA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006266 "DNA ligation"
evidence=ISO;IMP;IDA] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO;IGI;IMP]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISO;IMP] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007417
"central nervous system development" evidence=IGI;IMP] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=ISO] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0010332 "response to gamma radiation"
evidence=IMP] [GO:0016874 "ligase activity" evidence=ISO]
[GO:0032807 "DNA ligase IV complex" evidence=ISO;IBA] [GO:0033077
"T cell differentiation in thymus" evidence=IMP] [GO:0033151 "V(D)J
recombination" evidence=ISO;IMP;IDA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IMP] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IMP] [GO:0035019 "somatic stem cell
maintenance" evidence=IMP] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=IGI;IMP] [GO:0045190 "isotype
switching" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048146 "positive regulation of fibroblast
proliferation" evidence=IMP] [GO:0050769 "positive regulation of
neurogenesis" evidence=IMP] [GO:0051102 "DNA ligation involved in
DNA recombination" evidence=IMP] [GO:0051103 "DNA ligation involved
in DNA repair" evidence=ISO;IMP] [GO:0051276 "chromosome
organization" evidence=IGI] [GO:0051301 "cell division"
evidence=IEA] [GO:0051402 "neuron apoptotic process" evidence=IGI]
[GO:0070419 "nonhomologous end joining complex" evidence=ISO]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 MGI:MGI:1335098
Pfam:PF00533 GO:GO:0005524 GO:GO:0005694 GO:GO:0051301
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0001701
GO:GO:0051402 GO:GO:0007417 GO:GO:0043524 GO:GO:0010332
GO:GO:0007049 GO:GO:0050769 GO:GO:0033077 GO:GO:0035019
GO:GO:0045190 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0048146 EMBL:CH466566 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0051276 GO:GO:0005958 GO:GO:0006303
GO:GO:0006289 GO:GO:0033153 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 KO:K10777 OMA:HMCPSTK GO:GO:0032807 CTD:3981
HOGENOM:HOG000007831 HOVERGEN:HBG005516 OrthoDB:EOG4Q58NP
GO:GO:0051102 GO:GO:0033152 GO:GO:0002328 EMBL:AK030029
EMBL:AK148081 EMBL:AC138397 IPI:IPI00225019 RefSeq:NP_795927.2
UniGene:Mm.80584 ProteinModelPortal:Q8BTF7 STRING:Q8BTF7
PhosphoSite:Q8BTF7 PRIDE:Q8BTF7 Ensembl:ENSMUST00000095476
Ensembl:ENSMUST00000170033 GeneID:319583 KEGG:mmu:319583
UCSC:uc009kul.1 GeneTree:ENSGT00700000104500 InParanoid:Q8BTF7
NextBio:395028 CleanEx:MM_LIG4 Genevestigator:Q8BTF7
GermOnline:ENSMUSG00000049717 Uniprot:Q8BTF7
Length = 911
Score = 102 (41.0 bits), Expect = 0.00027, P = 0.00027
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 21 HKKGNEFKYFSRSLKP--VLEHKAQPVWEISGAEFSQAEIHTADGISIRFPRVTKIRDDK 78
HKK + KP +E + + +I AE ++++ G ++RFPR+ KIRDDK
Sbjct: 530 HKKSPPSSILCGTEKPEVYIEPQNSVIVQIKAAEIVPSDMYKT-GSTLRFPRIEKIRDDK 588
Query: 79 DWKTATNLPELKVLFKKS 96
+W L +L+ L K+
Sbjct: 589 EWHECMTLGDLEQLRGKA 606
>GENEDB_PFALCIPARUM|MAL13P1.22 [details] [associations]
symbol:MAL13P1.22 "DNA ligase 1" species:5833
"Plasmodium falciparum" [GO:0005657 "replication fork"
evidence=ISS] [GO:0006266 "DNA ligation" evidence=ISS] [GO:0006273
"lagging strand elongation" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006266 GO:GO:0005657 EMBL:AL844509 GenomeReviews:AL844509_GR
GO:GO:0006273 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GO:GO:0020011 OMA:ETICNIG RefSeq:XP_001349768.1
ProteinModelPortal:Q8IES4 EnsemblProtists:MAL13P1.22:mRNA
GeneID:813777 KEGG:pfa:MAL13P1.22 EuPathDB:PlasmoDB:PF3D7_1304100
ProtClustDB:CLSZ2432498 Uniprot:Q8IES4
Length = 912
Score = 102 (41.0 bits), Expect = 0.00027, P = 0.00027
Identities = 29/87 (33%), Positives = 49/87 (56%)
Query: 25 NEFKYF--SRSLKPVLEHKAQPVWEISGAEFSQAEIHTA------D--GISIRFPRVTKI 74
N+ Y+ S L P + A VWE+ A+ S + +HTA D GI +RFPR ++
Sbjct: 813 NKKSYYEVSDKLNPDVWFDAHYVWEVKAADLSLSPVHTAAIGIYADDKGIGLRFPRFLRL 872
Query: 75 RDDKDWKTATNLPELKVLFKKSKETSD 101
R+DK+ + AT ++ V F +++ +S+
Sbjct: 873 REDKNAEQATTTQQI-VDFYEAQFSSN 898
>UNIPROTKB|Q8IES4 [details] [associations]
symbol:PfLigI "DNA ligase" species:36329 "Plasmodium
falciparum 3D7" [GO:0005657 "replication fork" evidence=ISS]
[GO:0006266 "DNA ligation" evidence=ISS] [GO:0006273 "lagging
strand elongation" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006266 GO:GO:0005657 EMBL:AL844509 GenomeReviews:AL844509_GR
GO:GO:0006273 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GO:GO:0020011 OMA:ETICNIG RefSeq:XP_001349768.1
ProteinModelPortal:Q8IES4 EnsemblProtists:MAL13P1.22:mRNA
GeneID:813777 KEGG:pfa:MAL13P1.22 EuPathDB:PlasmoDB:PF3D7_1304100
ProtClustDB:CLSZ2432498 Uniprot:Q8IES4
Length = 912
Score = 102 (41.0 bits), Expect = 0.00027, P = 0.00027
Identities = 29/87 (33%), Positives = 49/87 (56%)
Query: 25 NEFKYF--SRSLKPVLEHKAQPVWEISGAEFSQAEIHTA------D--GISIRFPRVTKI 74
N+ Y+ S L P + A VWE+ A+ S + +HTA D GI +RFPR ++
Sbjct: 813 NKKSYYEVSDKLNPDVWFDAHYVWEVKAADLSLSPVHTAAIGIYADDKGIGLRFPRFLRL 872
Query: 75 RDDKDWKTATNLPELKVLFKKSKETSD 101
R+DK+ + AT ++ V F +++ +S+
Sbjct: 873 REDKNAEQATTTQQI-VDFYEAQFSSN 898
>TAIR|locus:2010207 [details] [associations]
symbol:AT1G49250 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
EMBL:CP002684 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:PAFENTT IPI:IPI00521723 RefSeq:NP_175351.1
UniGene:At.52091 ProteinModelPortal:F4I1P7 SMR:F4I1P7 PRIDE:F4I1P7
EnsemblPlants:AT1G49250.1 GeneID:841349 KEGG:ath:AT1G49250
PhylomeDB:F4I1P7 Uniprot:F4I1P7
Length = 657
Score = 85 (35.0 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 21/80 (26%), Positives = 41/80 (51%)
Query: 26 EFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHT-----AD---GISIRFPRVTKIRDD 77
++ L P + + VWE+ A+ + + ++ D GIS+RFPR+ +IR D
Sbjct: 565 QYYQVDNDLNPDVWLEPTEVWEVKAADLTVSPVYREAIGIVDPDKGISLRFPRLVRIRKD 624
Query: 78 KDWKTATNLPELKVLFKKSK 97
K+ + AT ++ +++ K
Sbjct: 625 KNPEEATTSDQIAEMYQAQK 644
Score = 52 (23.4 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 9 SEIKYDGERVQVH-KKGNEFKYFSR 32
+E KYDGER Q++ + + FSR
Sbjct: 310 AEYKYDGERAQIYYMEDGTVEIFSR 334
>UNIPROTKB|G4N7T1 [details] [associations]
symbol:MGG_06370 "DNA ligase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CM001234
KO:K10747 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 RefSeq:XP_003717204.1
EnsemblFungi:MGG_06370T0 GeneID:2684525 KEGG:mgr:MGG_06370
Uniprot:G4N7T1
Length = 896
Score = 82 (33.9 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 63 GISIRFPRVTKIRDDKDWKTATNLPELKVLFKKSKETS 100
GIS+RFPR K+RDDK AT+ ++ +++K + S
Sbjct: 846 GISLRFPRFIKLRDDKKPDEATSSRQVAEMYRKQESVS 883
Score = 61 (26.5 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 3 KNERCYSEIKYDGERVQVH---KKGNE 26
+N+ E KYDGER Q+H K+ NE
Sbjct: 513 ENQTFTCEYKYDGERAQIHYVAKEANE 539
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 124 124 0.00091 102 3 11 22 0.39 31
29 0.39 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 54
No. of states in DFA: 581 (62 KB)
Total size of DFA: 136 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.96u 0.09s 13.05t Elapsed: 00:00:07
Total cpu time: 12.96u 0.09s 13.05t Elapsed: 00:00:07
Start: Thu Aug 15 15:56:46 2013 End: Thu Aug 15 15:56:53 2013