RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14581
         (124 letters)



>d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 148

 Score = 60.4 bits (146), Expect = 2e-13
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 20  VHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTA--------DGISIRFPRV 71
           V      +     ++ P        VWE+  A+ S + I+ A         GIS+RFPR 
Sbjct: 63  VLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRF 122

Query: 72  TKIRDDKDWKTATNLPELKVLFKK 95
            ++R+DK  + AT   ++  L++K
Sbjct: 123 IRVREDKQPEQATTSAQVACLYRK 146


>d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal
          domain {Bacteriophage T7 [TaxId: 10760]}
          Length = 239

 Score = 37.6 bits (86), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 1  MAKNERCYSEIKYDGERVQVHKKGNE-FKYFSRSLKP 36
          +       +EIKYDG R  +         + SR  K 
Sbjct: 22 LDNAGYLIAEIKYDGVRGNICVDNTANSYWLSRVSKT 58


>d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 220

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 1  MAKNERCYSEIKYDGERVQVHK-KGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIH 59
            +      E KYDG+R Q+H  +G E K FSR+ +         +  I   +       
Sbjct: 24 RFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSF 83

Query: 60 TADG 63
            D 
Sbjct: 84 ILDT 87


>d1s68a_ d.142.2.4 (A:) RNA ligase 2, N-terminal domain
          {Bacteriophage T4 [TaxId: 10665]}
          Length = 233

 Score = 32.8 bits (74), Expect = 0.005
 Identities = 3/31 (9%), Positives = 9/31 (29%)

Query: 3  KNERCYSEIKYDGERVQVHKKGNEFKYFSRS 33
                +  K  G    +  + ++     R+
Sbjct: 26 TGGEWVAREKIHGTNFSLIIERDKVTCAKRT 56


>d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal
          domain {Chlorella virus PBCV-1 [TaxId: 10506]}
          Length = 188

 Score = 30.2 bits (67), Expect = 0.041
 Identities = 12/75 (16%), Positives = 17/75 (22%), Gaps = 5/75 (6%)

Query: 7  CYSEIKYDGERVQVHKKGNEFKYFSRSLKPVLEHKAQPVWEISGAEFSQAEIHTADGISI 66
          C +  K  G R          +  SR+ KP+       +      E S  EI        
Sbjct: 21 CLATPKIAGIRSVKQT-----QMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQ 75

Query: 67 RFPRVTKIRDDKDWK 81
                         
Sbjct: 76 DTTSAVMTGHKMYNA 90


>d2apla1 a.258.1.1 (A:2-150) Hypothetical protein PG0816
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 149

 Score = 23.6 bits (51), Expect = 6.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 87  PELKVLFKKSKETSDFTLKPKYDRI 111
             ++ +F K   T DF   P+Y+ +
Sbjct: 105 KAIQSVFAKYDLTDDFEASPEYEHL 129


>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit
          {Yeast (Candida albicans) [TaxId: 5476]}
          Length = 245

 Score = 23.6 bits (50), Expect = 8.7
 Identities = 6/32 (18%), Positives = 10/32 (31%)

Query: 3  KNERCYSEIKYDGERVQVHKKGNEFKYFSRSL 34
            +  +   K DG R  +    +  K     L
Sbjct: 58 MQKDYFVCEKTDGLRCLLFLINDPDKGEGVFL 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0444    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 453,055
Number of extensions: 19209
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 12
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.6 bits)