BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14582
(1689 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 1031 bits (2667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/654 (75%), Positives = 549/654 (83%), Gaps = 35/654 (5%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
DEIHLLHD+RGPVLEAL+AR IRNIE TQEDVRL+GLSATLPNY+DVAT LR+ P GLF
Sbjct: 214 DEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLF 273
Query: 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934
YFDNSFRPV LEQ Y+G+TEKKA+KRFQ+MN+IVYEK+MEHAG+NQ+LVFVHSRKETGKT
Sbjct: 274 YFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKT 333
Query: 935 ARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDR 994
ARAIRDMCLEKDTLG FLREGSAS EVLRTEA+Q KN EL+DLLPYGFAIHHAGMTRVDR
Sbjct: 334 ARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDR 393
Query: 995 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGV 1054
TLVEDLFAD+HIQVLVSTATLAWGV
Sbjct: 394 -----------------------------------TLVEDLFADKHIQVLVSTATLAWGV 418
Query: 1055 NLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYY 1114
NLPAHTVIIKGTQ+Y+PEKGRW ELGALD+LQMLGRAGRPQYDTKGEG+LIT+H ELQYY
Sbjct: 419 NLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYY 478
Query: 1115 LSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGIS 1174
LSLLN QLP+ESQM+SKLPDMLNAEIVLG VQN KDAV WLGY YLYIRMLR+P LYGIS
Sbjct: 479 LSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGIS 538
Query: 1175 HDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMA 1234
HD LK DPLL+ R DL+HTAAL L+++ L+KYD+K+G+ QVTELGRIASHYY T++T+
Sbjct: 539 HDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQ 598
Query: 1235 TYNQLLKPTLSEIELFRVFSLSGEFRHITVRXXXXXXXXXXXXRAPIPIKESTDEPSAKV 1294
TYNQLLKPTLSEIELFRVFSLS EF++ITVR R PIP+KES +EPSAK+
Sbjct: 599 TYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKI 658
Query: 1295 NILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVD 1354
N+LLQA+ISQLKLEGFALM+DMV+VTQSA RLMRAIFEIVL RGWAQL DK L+LCKM+D
Sbjct: 659 NVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMID 718
Query: 1355 RRMWQSMSPLRQFRXXXXXXXXXXXXXNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVH 1414
+RMWQSM PLRQFR NFP+ERLYDL NEIGELIR+PK+GKTIHKYVH
Sbjct: 719 KRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVH 778
Query: 1415 QFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAI 1468
FPKLEL+ H+QPITRSTL+VELTI+PDFQWDEK+HG SE FWILVEDVDSE I
Sbjct: 779 LFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVI 832
Score = 346 bits (887), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 180/318 (56%), Positives = 216/318 (67%), Gaps = 57/318 (17%)
Query: 407 RQVLDLEDLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPID 466
RQVLDLEDL F+ GSHFM+NKRC+LPDGSFR+QRKGYEEVHVPALKPKP G +E L+P++
Sbjct: 5 RQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVE 64
Query: 467 KLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGA------------------ 508
KLP+Y Q FE FKTLNRIQS+L ++ALE+DENLLLCAPTGA
Sbjct: 65 KLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHI 124
Query: 509 ---GKTNV---------ALLCMLQEI----GKHINADGTINAD-------------EFKI 539
G NV + ++QE+ GK + G A+ +I
Sbjct: 125 NMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQI 184
Query: 540 IYVAPMR----------SLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQED 589
I P + ++V DEIHLLHD+RGPVLEAL+AR IRNIE TQED
Sbjct: 185 IVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQED 244
Query: 590 VRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMN 649
VRL+GLSATLPNY+DVAT LR+ P GLFYFDNSFRPV LEQ Y+G+TEKKA+KRFQ+MN
Sbjct: 245 VRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMN 304
Query: 650 DIVYEKVMEHAGRNQLLV 667
+IVYEK+MEHAG+NQ+LV
Sbjct: 305 EIVYEKIMEHAGKNQVLV 322
Score = 328 bits (842), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 153/213 (71%), Positives = 174/213 (81%)
Query: 1461 EDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIK 1520
E++ S+AIRLIQACVDVLSSNGWLSPA+AAME+AQM+TQAMWSKDSYLKQLPHF ++ IK
Sbjct: 1512 EEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIK 1571
Query: 1521 RCTEKGVETVFDIMXXXXXXXXXXXXXXXXXXADVARFCNRYPNIELSYEVLNKDRIXXX 1580
RCT+KGVE+VFDIM ADVARFCNRYPNIELSYEV++KD I
Sbjct: 1572 RCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSG 1631
Query: 1581 XXXXXXXXLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIKL 1640
L+RE+EVTGPVIAP +PQKREEGWWVVIGD K+NSL+SIKRLTLQQKAK+KL
Sbjct: 1632 GPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKL 1691
Query: 1641 DFVAPNPGHHSYALYFMSDAYLGCDQEYKFSID 1673
DFVAP G H+Y LYFMSDAY+GCDQEYKFS+D
Sbjct: 1692 DFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVD 1724
Score = 243 bits (621), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 198/679 (29%), Positives = 318/679 (46%), Gaps = 75/679 (11%)
Query: 812 FGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPET 871
F DE+HL+ E GPVLE + +R + +R+V LS++L N KDVA L T
Sbjct: 1050 FVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCS-AT 1108
Query: 872 GLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKET 931
F F + RPV LE G R M VY + +H+ + ++VFV SRK+T
Sbjct: 1109 STFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQT 1168
Query: 932 GKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTR 991
TA I C +FL TE +DL+PY +
Sbjct: 1169 RLTAIDILTTCAADIQRQRFLH---------CTE---------KDLIPYLEKLS------ 1204
Query: 992 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLA 1051
D TL E L L L G+ + ++R LVE LF+ IQV+V++ +L
Sbjct: 1205 -DSTLKETL--------LNGVGYLHEGL-----SPMERRLVEQLFSSGAIQVVVASRSLC 1250
Query: 1052 WGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL 1111
WG+N+ AH VII TQ YN + +V+ DVLQM+G A RP D +G V++ S+
Sbjct: 1251 WGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKK 1310
Query: 1112 QYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLY 1171
++ L LPVES + + D NAEIV T++N +DAV +L +T+LY RM + PN Y
Sbjct: 1311 DFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYY 1370
Query: 1172 ---GISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVT--ELGRIASHY 1226
GISH L + H ++L+ LE+S I + + M V LG IA++Y
Sbjct: 1371 NLQGISHRHLSD------HLSELVEQTLSDLEQSKCISIEDE---MDVAPLNLGMIAAYY 1421
Query: 1227 YCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVRXXXXXXXXXXXXRAPIPIKES 1286
Y + T+ ++ L L + S + E+ +I +R + P +
Sbjct: 1422 YINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNP 1481
Query: 1287 T-DEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADK 1345
++P K N+LLQA++S+++L L SD + A RL++A +++ GW A
Sbjct: 1482 KFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALA 1540
Query: 1346 ALSLCKMVDRRMWQSMSPLRQFRXXXXXXXXXXXXXNFPWERLYDLGPNEIGELIRVPKL 1405
A+ L +MV + MW S L+Q E ++D+ E E + +L
Sbjct: 1541 AMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGV--ESVFDIMEMEDEERNALLQL 1598
Query: 1406 GKT----IHKYVHQFPKLELATHIQPITRSTLRV--ELTISPDFQWDEKLHGG------- 1452
+ + ++ +++P +EL+ + + + ++R + + + +E++ G
Sbjct: 1599 TDSQIADVARFCNRYPNIELSYEV--VDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFP 1656
Query: 1453 ---SEGFWILVEDVDSEAI 1468
EG+W+++ D S ++
Sbjct: 1657 QKREEGWWVVIGDAKSNSL 1675
Score = 174 bits (440), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 73/92 (79%), Positives = 85/92 (92%)
Query: 668 STLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFF 727
STL+VELTI+PDFQWDEK+HG SE FWILVEDVDSEV+LHHEYFLLK++YA D+H++ FF
Sbjct: 795 STLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFF 854
Query: 728 VPVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
VPVFEPLPPQYF+R+VSDRW+ ET LPVSFR
Sbjct: 855 VPVFEPLPPQYFIRVVSDRWLSCETQLPVSFR 886
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/54 (85%), Positives = 51/54 (94%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 814
P GAGKTNVAL+CML+EIGKHIN DGTIN D+FKIIY+APMRSLVQEMVG+FGK
Sbjct: 103 PTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 156
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 116/302 (38%), Gaps = 69/302 (22%)
Query: 453 PKPMGPDETLVPIDKLPRYV--QHAFED-----FKTLNRIQSRLCKSALESDENLLLCAP 505
P+ P L+ + LP AFE F N IQ+++ + SD+N+ + AP
Sbjct: 891 PEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAP 950
Query: 506 TGAGKT---NVALLCML--------------QEIGKHINAD-----------------GT 531
TG+GKT A+L ML + + + + D G
Sbjct: 951 TGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGE 1010
Query: 532 INAD-----EFKIIYVAP-----------MRSLVQEMVGNFGKDEIHLLHDERGPVLEAL 575
+ D + II P R VQ + F DE+HL+ E GPVLE +
Sbjct: 1011 TSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQN-INLFVVDEVHLIGGENGPVLEVI 1069
Query: 576 IARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIG 635
+R + +R+V LS++L N KDVA L T F F + RPV LE G
Sbjct: 1070 CSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCS-ATSTFNFHPNVRPVPLELHIQG 1128
Query: 636 VTEKKALKRFQVMNDIVYEKVMEHA----------GRNQLLVSTLRVELTISPDFQWDEK 685
R M VY + +H+ R Q ++ + + T + D Q
Sbjct: 1129 FNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRF 1188
Query: 686 LH 687
LH
Sbjct: 1189 LH 1190
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 23/228 (10%)
Query: 1454 EGFWILVE--DVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQL 1511
EGF ++ + V A RL++A +++ + GW + + +MI + MW L+Q
Sbjct: 672 EGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQF 731
Query: 1512 PHFNADIIKRCTEKGVETVFDIMXXXXXXXXXXXXXXXXXXADVARFCNRYPNIELSYEV 1571
+++K+ +K F+ + + ++ + +P +ELS +
Sbjct: 732 RKLPEEVVKKIEKKNFP--FERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHL 789
Query: 1572 LNKDRIXXXXXXXXXXXLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLT 1631
R +++V G E +W+++ D + +L +
Sbjct: 790 QPITRSTLKVELTITPDFQWDEKVHG----------SSEAFWILVEDVDSEVILHHEYFL 839
Query: 1632 LQQKAKIKLD-----FVAP--NPGHHSYALYFMSDAYLGCDQEYKFSI 1672
L KAK D F P P Y + +SD +L C+ + S
Sbjct: 840 L--KAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSF 885
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 1029 bits (2660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/654 (75%), Positives = 548/654 (83%), Gaps = 35/654 (5%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
DEIHLLHD+RGPVLEAL+AR IRNIE TQEDVRL+GLSATLPNY+DVAT LR+ P GLF
Sbjct: 214 DEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLF 273
Query: 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934
YFDNSFRPV LEQ Y+G+TEKKA+KRFQ+MN+IVYEK+MEHAG+NQ+LVFVHSRKETGKT
Sbjct: 274 YFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKT 333
Query: 935 ARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDR 994
ARAIRDMCLEKDTLG FLREGSAS EVLRTEA+Q KN EL+DLLPYGFAIHHAGMTRVDR
Sbjct: 334 ARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDR 393
Query: 995 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGV 1054
TLVEDLFAD+HIQVLVSTATLAWGV
Sbjct: 394 -----------------------------------TLVEDLFADKHIQVLVSTATLAWGV 418
Query: 1055 NLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYY 1114
NLPAHTVIIKGTQ+Y+PEKGRW ELGALD+LQMLGRAGRPQYDTKGEG+LIT+H ELQYY
Sbjct: 419 NLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYY 478
Query: 1115 LSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGIS 1174
LSLLN QLP+ESQM+SKLPDMLNAEIVLG VQN KDAV WLGY YLYIRMLR+P LYGIS
Sbjct: 479 LSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGIS 538
Query: 1175 HDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMA 1234
HD LK DPLL+ R DL+HTAAL L+++ L+KYD+K+G+ QVTELGRIASHYY T++T+
Sbjct: 539 HDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQ 598
Query: 1235 TYNQLLKPTLSEIELFRVFSLSGEFRHITVRXXXXXXXXXXXXRAPIPIKESTDEPSAKV 1294
TYNQLLKPTLSEIELFRVFSLS EF++ITVR R PIP+KES +EPSAK+
Sbjct: 599 TYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKI 658
Query: 1295 NILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVD 1354
N+LLQA+ISQLKLEGFALM+DMV+VTQ A RLMRAIFEIVL RGWAQL DK L+LCKM+D
Sbjct: 659 NVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMID 718
Query: 1355 RRMWQSMSPLRQFRXXXXXXXXXXXXXNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVH 1414
+RMWQSM PLRQFR NFP+ERLYDL NEIGELIR+PK+GKTIHKYVH
Sbjct: 719 KRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVH 778
Query: 1415 QFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAI 1468
FPKLEL+ H+QPITRSTL+VELTI+PDFQWDEK+HG SE FWILVEDVDSE I
Sbjct: 779 LFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVI 832
Score = 346 bits (887), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 180/318 (56%), Positives = 216/318 (67%), Gaps = 57/318 (17%)
Query: 407 RQVLDLEDLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPID 466
RQVLDLEDL F+ GSHFM+NKRC+LPDGSFR+QRKGYEEVHVPALKPKP G +E L+P++
Sbjct: 5 RQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVE 64
Query: 467 KLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGA------------------ 508
KLP+Y Q FE FKTLNRIQS+L ++ALE+DENLLLCAPTGA
Sbjct: 65 KLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHI 124
Query: 509 ---GKTNV---------ALLCMLQEI----GKHINADGTINAD-------------EFKI 539
G NV + ++QE+ GK + G A+ +I
Sbjct: 125 NMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQI 184
Query: 540 IYVAPMR----------SLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQED 589
I P + ++V DEIHLLHD+RGPVLEAL+AR IRNIE TQED
Sbjct: 185 IVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQED 244
Query: 590 VRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMN 649
VRL+GLSATLPNY+DVAT LR+ P GLFYFDNSFRPV LEQ Y+G+TEKKA+KRFQ+MN
Sbjct: 245 VRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMN 304
Query: 650 DIVYEKVMEHAGRNQLLV 667
+IVYEK+MEHAG+NQ+LV
Sbjct: 305 EIVYEKIMEHAGKNQVLV 322
Score = 328 bits (842), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 153/213 (71%), Positives = 174/213 (81%)
Query: 1461 EDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIK 1520
E++ S+AIRLIQACVDVLSSNGWLSPA+AAME+AQM+TQAMWSKDSYLKQLPHF ++ IK
Sbjct: 1512 EEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIK 1571
Query: 1521 RCTEKGVETVFDIMXXXXXXXXXXXXXXXXXXADVARFCNRYPNIELSYEVLNKDRIXXX 1580
RCT+KGVE+VFDIM ADVARFCNRYPNIELSYEV++KD I
Sbjct: 1572 RCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSG 1631
Query: 1581 XXXXXXXXLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIKL 1640
L+RE+EVTGPVIAP +PQKREEGWWVVIGD K+NSL+SIKRLTLQQKAK+KL
Sbjct: 1632 GPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKL 1691
Query: 1641 DFVAPNPGHHSYALYFMSDAYLGCDQEYKFSID 1673
DFVAP G H+Y LYFMSDAY+GCDQEYKFS+D
Sbjct: 1692 DFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVD 1724
Score = 243 bits (621), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 198/679 (29%), Positives = 318/679 (46%), Gaps = 75/679 (11%)
Query: 812 FGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPET 871
F DE+HL+ E GPVLE + +R + +R+V LS++L N KDVA L T
Sbjct: 1050 FVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCS-AT 1108
Query: 872 GLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKET 931
F F + RPV LE G R M VY + +H+ + ++VFV SRK+T
Sbjct: 1109 STFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQT 1168
Query: 932 GKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTR 991
TA I C +FL TE +DL+PY +
Sbjct: 1169 RLTAIDILTTCAADIQRQRFLH---------CTE---------KDLIPYLEKLS------ 1204
Query: 992 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLA 1051
D TL E L L L G+ + ++R LVE LF+ IQV+V++ +L
Sbjct: 1205 -DSTLKETL--------LNGVGYLHEGL-----SPMERRLVEQLFSSGAIQVVVASRSLC 1250
Query: 1052 WGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL 1111
WG+N+ AH VII TQ YN + +V+ DVLQM+G A RP D +G V++ S+
Sbjct: 1251 WGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKK 1310
Query: 1112 QYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLY 1171
++ L LPVES + + D NAEIV T++N +DAV +L +T+LY RM + PN Y
Sbjct: 1311 DFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYY 1370
Query: 1172 ---GISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVT--ELGRIASHY 1226
GISH L + H ++L+ LE+S I + + M V LG IA++Y
Sbjct: 1371 NLQGISHRHLSD------HLSELVEQTLSDLEQSKCISIEDE---MDVAPLNLGMIAAYY 1421
Query: 1227 YCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVRXXXXXXXXXXXXRAPIPIKES 1286
Y + T+ ++ L L + S + E+ +I +R + P +
Sbjct: 1422 YINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNP 1481
Query: 1287 T-DEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADK 1345
++P K N+LLQA++S+++L L SD + A RL++A +++ GW A
Sbjct: 1482 KFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALA 1540
Query: 1346 ALSLCKMVDRRMWQSMSPLRQFRXXXXXXXXXXXXXNFPWERLYDLGPNEIGELIRVPKL 1405
A+ L +MV + MW S L+Q E ++D+ E E + +L
Sbjct: 1541 AMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGV--ESVFDIMEMEDEERNALLQL 1598
Query: 1406 GKT----IHKYVHQFPKLELATHIQPITRSTLRV--ELTISPDFQWDEKLHGG------- 1452
+ + ++ +++P +EL+ + + + ++R + + + +E++ G
Sbjct: 1599 TDSQIADVARFCNRYPNIELSYEV--VDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFP 1656
Query: 1453 ---SEGFWILVEDVDSEAI 1468
EG+W+++ D S ++
Sbjct: 1657 QKREEGWWVVIGDAKSNSL 1675
Score = 174 bits (440), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 73/92 (79%), Positives = 85/92 (92%)
Query: 668 STLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFF 727
STL+VELTI+PDFQWDEK+HG SE FWILVEDVDSEV+LHHEYFLLK++YA D+H++ FF
Sbjct: 795 STLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFF 854
Query: 728 VPVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
VPVFEPLPPQYF+R+VSDRW+ ET LPVSFR
Sbjct: 855 VPVFEPLPPQYFIRVVSDRWLSCETQLPVSFR 886
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/54 (85%), Positives = 51/54 (94%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 814
P GAGKTNVAL+CML+EIGKHIN DGTIN D+FKIIY+APMRSLVQEMVG+FGK
Sbjct: 103 PTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 156
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 116/302 (38%), Gaps = 69/302 (22%)
Query: 453 PKPMGPDETLVPIDKLPRYV--QHAFED-----FKTLNRIQSRLCKSALESDENLLLCAP 505
P+ P L+ + LP AFE F N IQ+++ + SD+N+ + AP
Sbjct: 891 PEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAP 950
Query: 506 TGAGKT---NVALLCML--------------QEIGKHINAD-----------------GT 531
TG+GKT A+L ML + + + + D G
Sbjct: 951 TGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGE 1010
Query: 532 INAD-----EFKIIYVAP-----------MRSLVQEMVGNFGKDEIHLLHDERGPVLEAL 575
+ D + II P R VQ + F DE+HL+ E GPVLE +
Sbjct: 1011 TSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQN-INLFVVDEVHLIGGENGPVLEVI 1069
Query: 576 IARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIG 635
+R + +R+V LS++L N KDVA L T F F + RPV LE G
Sbjct: 1070 CSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCS-ATSTFNFHPNVRPVPLELHIQG 1128
Query: 636 VTEKKALKRFQVMNDIVYEKVMEHA----------GRNQLLVSTLRVELTISPDFQWDEK 685
R M VY + +H+ R Q ++ + + T + D Q
Sbjct: 1129 FNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRF 1188
Query: 686 LH 687
LH
Sbjct: 1189 LH 1190
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 23/228 (10%)
Query: 1454 EGFWILVE--DVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQL 1511
EGF ++ + V A RL++A +++ + GW + + +MI + MW L+Q
Sbjct: 672 EGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQF 731
Query: 1512 PHFNADIIKRCTEKGVETVFDIMXXXXXXXXXXXXXXXXXXADVARFCNRYPNIELSYEV 1571
+++K+ +K F+ + + ++ + +P +ELS +
Sbjct: 732 RKLPEEVVKKIEKKNFP--FERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHL 789
Query: 1572 LNKDRIXXXXXXXXXXXLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLT 1631
R +++V G E +W+++ D + +L +
Sbjct: 790 QPITRSTLKVELTITPDFQWDEKVHG----------SSEAFWILVEDVDSEVILHHEYFL 839
Query: 1632 LQQKAKIKLD-----FVAP--NPGHHSYALYFMSDAYLGCDQEYKFSI 1672
L KAK D F P P Y + +SD +L C+ + S
Sbjct: 840 L--KAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSF 885
>pdb|2Q0Z|X Chain X, Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS.
Northeast Structural Genomics Target Hr1979
Length = 339
Score = 310 bits (794), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 155/226 (68%), Positives = 176/226 (77%), Gaps = 4/226 (1%)
Query: 1461 EDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIK 1520
E++ S+AIRLIQACVDVLSSNGWLSPA+AA E+AQ +TQA WSKDSYLKQLPHF ++ IK
Sbjct: 116 EEILSKAIRLIQACVDVLSSNGWLSPALAAXELAQXVTQAXWSKDSYLKQLPHFTSEHIK 175
Query: 1521 RCTEKGVETVFDIMXXXXXXXXXXXXXXXXXXADVARFCNRYPNIELSYEVLNKDRIXXX 1580
RCT+KGVE+VFDI ADVARFCNRYPNIELSYEV++KD I
Sbjct: 176 RCTDKGVESVFDIXEXEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSG 235
Query: 1581 XXXXXXXXLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIKL 1640
L+RE+EVTGPVIAP +PQKREEGWWVVIGD K+NSL+SIKRLTLQQKAK+KL
Sbjct: 236 GPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKL 295
Query: 1641 DFVAPNPGHHSYALYFMSDAYLGCDQEYKFSIDVSEYYSGGESDSD 1686
DFVAP G H+Y LYF SDAY GCDQEYKFS+DV E E+DSD
Sbjct: 296 DFVAPATGAHNYTLYFXSDAYXGCDQEYKFSVDVKE----AETDSD 337
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 2/150 (1%)
Query: 1219 LGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVRXXXXXXXXXXXXR 1278
LG IA++YY + T+ ++ L L + S + E+ +I +R +
Sbjct: 18 LGXIAAYYYINYTTIELFSXSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQK 77
Query: 1279 APIPIKEST-DEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYR 1337
P + ++P K N+LLQA++S+ +L L SD + A RL++A +++
Sbjct: 78 VPHKLNNPKFNDPHVKTNLLLQAHLSRXQLSA-ELQSDTEEILSKAIRLIQACVDVLSSN 136
Query: 1338 GWAQLADKALSLCKMVDRRMWQSMSPLRQF 1367
GW A A L + V + W S L+Q
Sbjct: 137 GWLSPALAAXELAQXVTQAXWSKDSYLKQL 166
>pdb|3IM1|A Chain A, Structure Of The C-Terminal Sec63 Unit Of Yeast Brr2,
P212121 Form
pdb|3IM2|A Chain A, Structure Of The C-Terminal Sec63 Unit Of Yeast Brr2, P41212
Form
Length = 328
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 130/243 (53%), Gaps = 18/243 (7%)
Query: 1434 RVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEV 1493
R+EL + DFQ D K D+ + + LI VD+LS+NG+L+ A AM++
Sbjct: 101 RLELPV--DFQNDLK-------------DILEKVVPLINVVVDILSANGYLN-ATTAMDL 144
Query: 1494 AQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMXXXXXXXXXXXXXXXXXXA 1553
AQM+ Q +W D+ L+Q+PHFN I+++C E VETV+DIM A
Sbjct: 145 AQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLA 204
Query: 1554 DVARFCNRYPNIELSYEVLNKDRIXXXXXXXXXXXLDREDEVTG-PVIAPFYPQKREEGW 1612
VA F N YPN+EL+Y + N D + L R+ E V + YP + E W
Sbjct: 205 QVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRDVEPENLQVTSEKYPFDKLESW 264
Query: 1613 WVVIGDPKTNSLLSIKRLTLQQKA-KIKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFS 1671
W+V+G+ L +IK++TL ++ + +L+F P G H+ ++ + D+YL D+E F
Sbjct: 265 WLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPTSGKHNLTIWCVCDSYLDADKELSFE 324
Query: 1672 IDV 1674
I+V
Sbjct: 325 INV 327
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 16/223 (7%)
Query: 1212 GHMQVTEL------GRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVR 1265
G M+ TE+ G IASHY + T+ ++ L T + + V S + EF + +R
Sbjct: 1 GAMEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLR 60
Query: 1266 XXXXXXXXXXXXRAPIPIKESTDEPSA--KVNILLQAYISQLKLEGFALMSDMVFVTQSA 1323
R P+ E T S KV +LLQAY S+L+L +D+ + +
Sbjct: 61 KGDRALLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLEL-PVDFQNDLKDILEKV 119
Query: 1324 ARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRXXXXXXXXXXXXXNF 1383
L+ + +I+ G+ A A+ L +M+ + +W +PLRQ N
Sbjct: 120 VPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINV 178
Query: 1384 PWERLYDLGPNEIGELIRVPKLGKT----IHKYVHQFPKLELA 1422
E +YD+ E E + L + + +V+ +P +EL
Sbjct: 179 --ETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELT 219
>pdb|3HIB|A Chain A, Crystal Structure Of The Second Sec63 Domain Of Yeast Brr2
Length = 318
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 127/243 (52%), Gaps = 18/243 (7%)
Query: 1434 RVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEV 1493
R+EL + DFQ D K D+ + + LI VD+LS+NG+L+ A A ++
Sbjct: 91 RLELPV--DFQNDLK-------------DILEKVVPLINVVVDILSANGYLN-ATTAXDL 134
Query: 1494 AQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMXXXXXXXXXXXXXXXXXXA 1553
AQ + Q +W D+ L+Q+PHFN I+++C E VETV+DI A
Sbjct: 135 AQXLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYDIXALEDEERDEILTLTDSQLA 194
Query: 1554 DVARFCNRYPNIELSYEVLNKDRIXXXXXXXXXXXLDREDEVTG-PVIAPFYPQKREEGW 1612
VA F N YPN+EL+Y + N D + L R+ E V + YP + E W
Sbjct: 195 QVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRDVEPENLQVTSEKYPFDKLESW 254
Query: 1613 WVVIGDPKTNSLLSIKRLTLQQKA-KIKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFS 1671
W+V+G+ L +IK++TL ++ + +L+F P G H+ ++ + D+YL D+E F
Sbjct: 255 WLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPTSGKHNLTIWCVCDSYLDADKELSFE 314
Query: 1672 IDV 1674
I+V
Sbjct: 315 INV 317
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 10/207 (4%)
Query: 1222 IASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVRXXXXXXXXXXXXRAPI 1281
IASHY + T+ ++ L T + V S + EF + +R R P+
Sbjct: 7 IASHYGVSFFTIQSFVSSLSNTSTLKNXLYVLSTAVEFESVPLRKGDRALLVKLSKRLPL 66
Query: 1282 PIKESTDEPSA--KVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGW 1339
E T S KV +LLQAY S+L+L +D+ + + L+ + +I+ G+
Sbjct: 67 RFPEHTSSGSVSFKVFLLLQAYFSRLEL-PVDFQNDLKDILEKVVPLINVVVDILSANGY 125
Query: 1340 AQLADKALSLCKMVDRRMWQSMSPLRQFRXXXXXXXXXXXXXNFPWERLYDLGPNEIGEL 1399
A A L + + + +W +PLRQ N E +YD+ E E
Sbjct: 126 LN-ATTAXDLAQXLIQGVWDVDNPLRQIPHFNNKILEKCKEINV--ETVYDIXALEDEER 182
Query: 1400 IRVPKLGKT----IHKYVHQFPKLELA 1422
+ L + + +V+ +P +EL
Sbjct: 183 DEILTLTDSQLAQVAAFVNNYPNVELT 209
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 165/354 (46%), Gaps = 97/354 (27%)
Query: 809 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRI 867
V F DE+H L+D ERGPV+E++ R R L+ LSAT+ NYK +A L
Sbjct: 146 VNYFVLDELHYLNDPERGPVVESVTIRAKRR--------NLLALSATISNYKQIAKWLGA 197
Query: 868 KPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVM-----------NDIVYEKVMEHA 916
+P ++RPV L + I KK K + V+ +D + ++
Sbjct: 198 EP------VATNWRPVPLIEGVIYPERKK--KEYNVIFKDNTTKKVHGDDAIIAYTLDSL 249
Query: 917 GRN-QLLVFVHSRKETGKTARAIRD----MCLEKDTLGQFLRE-------GSASMEVLRT 964
+N Q+LVF +SRK TA I + + L+++ L + L++ GS E+L++
Sbjct: 250 SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKS 309
Query: 965 EADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAH 1024
L+ G A HHAG+++ R L+E+ F R I+V+V+T TLA GVNLPA
Sbjct: 310 ------------LISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPAR 357
Query: 1025 TVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE-KGRWVELGALD 1083
TV+ + D++ +N + G + E+ ++
Sbjct: 358 TVI----IGDIYR-------------------------------FNKKIAGYYDEIPIME 382
Query: 1084 VLQMLGRAGRPQYDTKGEGVLITNHSE------LQYYLSLLNHQLPVESQMISK 1131
QM GRAGRP +D GE +++ E +Y LS + P+ES++ S+
Sbjct: 383 YKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVE---PIESKLGSE 433
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 99/252 (39%), Gaps = 85/252 (33%)
Query: 456 MGPDETLVPID--KLPRYVQHAFED--FKTLNRIQSRLCKSALESDENLLLCAPTGAGKT 511
MG + +PI+ KLP V + K LN Q+ K L LLL +PTG+GKT
Sbjct: 1 MGLELEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKT 60
Query: 512 NVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ---------EMVG-------- 554
+A + ++ + K+ K IYV P+R+L E++G
Sbjct: 61 LIAEMGIISFLLKNGG----------KAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSG 110
Query: 555 -------------------------------------NFGKDEIHLLHD-ERGPVLEALI 576
F DE+H L+D ERGPV+E++
Sbjct: 111 DYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVT 170
Query: 577 ARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGV 636
R R L+ LSAT+ NYK +A L +P ++RPV L + I
Sbjct: 171 IRAKRR--------NLLALSATISNYKQIAKWLGAEP------VATNWRPVPLIEGVIYP 216
Query: 637 TEKKALKRFQVM 648
KK K + V+
Sbjct: 217 ERKK--KEYNVI 226
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 137/306 (44%), Gaps = 77/306 (25%)
Query: 815 DEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DEIHLL E RG LE L+ + R +A +R++GLSAT PN ++A L
Sbjct: 145 DEIHLLDSEKRGATLEILVTKMRRMNKA----LRVIGLSATAPNVTEIAEWLDAD----- 195
Query: 874 FYFDNSFRPVALEQQYIGVTEKKALKRFQ---------VMNDIVYEKVMEHAGRNQLLVF 924
Y+ + +RPV L + GV + L+ F ++V E V E+ G +LVF
Sbjct: 196 -YYVSDWRPVPLVE---GVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGG---VLVF 248
Query: 925 VHSRKETGKTA---RAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYG 981
+R+ KTA AI +E + L + + E + E+ R A+ V+ G
Sbjct: 249 ESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEG-EMSRKLAECVRKGA-------- 299
Query: 982 FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHI 1041
A HHAG+ R +VED F +I+V+V+T TLA GVNLPA V+ R+L + I
Sbjct: 300 -AFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRI 358
Query: 1042 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101
+V + QM GRAGRP D +GE
Sbjct: 359 KV--------------------------------------SEYKQMAGRAGRPGMDERGE 380
Query: 1102 GVLITN 1107
++I
Sbjct: 381 AIIIVG 386
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 72/178 (40%), Gaps = 54/178 (30%)
Query: 496 SDENLLLCAPTGAGKTNVALLCMLQE---------------------------------- 521
S +NLLL PT AGKT +A + M++E
Sbjct: 39 SGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRI 98
Query: 522 ---IGKHINADGTINADEFKIIYVAPMRSLVQ------EMVGNFGKDEIHLLHDE-RGPV 571
G + + D + + + SL++ + V DEIHLL E RG
Sbjct: 99 GISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGAT 158
Query: 572 LEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVAL 629
LE L+ + R +A +R++GLSAT PN ++A L Y+ + +RPV L
Sbjct: 159 LEILVTKMRRMNKA----LRVIGLSATAPNVTEIAEWLDAD------YYVSDWRPVPL 206
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 167/362 (46%), Gaps = 79/362 (21%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DEIHL+ +RG LE ++A + +++GLSAT+ N +++A L +
Sbjct: 145 DEIHLIGSRDRGATLEVILAHMLGK-------AQIIGLSATIGNPEELAEWLNAE----- 192
Query: 874 FYFDNSFRPVALEQQ--YIGVT--EKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRK 929
+ +RPV L + Y G E ++ RF ++VY+ + + G L+FV+ R+
Sbjct: 193 -LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKG---ALIFVNMRR 248
Query: 930 ETGKTA----RAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIH 985
+ + A + ++ + + + + L E + S+E + N +L + G A H
Sbjct: 249 KAERVALELSKKVKSLLTKPEI--RALNELADSLE------ENPTNEKLAKAIRGGVAFH 300
Query: 986 HAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLV 1045
HAG+ R +R LVE+ F I+ +V+T TL+ G+N PA V+ R + ++D ++
Sbjct: 301 HAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWR--YSDFGME--- 355
Query: 1046 STATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLI 1105
+ ++V QMLGRAGRP+YD GEG+++
Sbjct: 356 --------------------------------RIPIIEVHQMLGRAGRPKYDEVGEGIIV 383
Query: 1106 TNHSE----LQYYL----SLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGY 1157
+ + + +Y+ L QL ES + S++ ++ A TV+ + ++ Y
Sbjct: 384 STSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALI-ATFGYSTVEEILKFISNTFY 442
Query: 1158 TY 1159
Y
Sbjct: 443 AY 444
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 82/235 (34%)
Query: 486 QSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545
Q+ KS + +N L+ PT +GKT +A + M+ I + G K +Y+ P+
Sbjct: 28 QAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRI---LTQGG-------KAVYIVPL 77
Query: 546 RSLVQ---------------------------EMVGNFG--------------------- 557
++L + E +G +
Sbjct: 78 KALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIK 137
Query: 558 ------KDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLR 610
DEIHL+ +RG LE ++A + +++GLSAT+ N +++A L
Sbjct: 138 DVKILVADEIHLIGSRDRGATLEVILAHMLGK-------AQIIGLSATIGNPEELAEWLN 190
Query: 611 IKPETGLFYFDNSFRPVALEQQ--YIGVT--EKKALKRFQVMNDIVYEKVMEHAG 661
+ + +RPV L + Y G E ++ RF ++VY+ + + G
Sbjct: 191 AE------LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKG 239
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 134/339 (39%), Gaps = 100/339 (29%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT-LLRIKPETG 872
DE+H + D ERG V E I + VR V LSAT+PN + A + +I +
Sbjct: 199 DEVHYMRDKERGVVWEETII-------LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 251
Query: 873 LFYFDNSFRPVALEQQ---------YIGVTEKKALK--RFQ-----VMNDI--------- 907
+ N FRP L+ Y+ V EK + FQ + N I
Sbjct: 252 HIVYTN-FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDS 310
Query: 908 --------------------VYE--KVMEHAGRNQLLVFVHSRKETGKTARAIRDMCL-- 943
+Y+ K++ N ++VF S+++ + A + +
Sbjct: 311 RGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNS 370
Query: 944 --EKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLF 1001
EK+ L + A + E Q+K+ + LL G IHH+G+ + + ++E LF
Sbjct: 371 DDEKEALTKIFNNAIALLPETDRELPQIKH--ILPLLRRGIGIHHSGLLPILKEVIEILF 428
Query: 1002 ADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTV 1061
+ ++VL +T T + G+N+PA TV V T+ W
Sbjct: 429 QEGFLKVLFATETFSIGLNMPAKTV------------------VFTSVRKW--------- 461
Query: 1062 IIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100
G Q RWV G + +QM GRAGR D +G
Sbjct: 462 --DGQQF------RWVSGG--EYIQMSGRAGRRGLDDRG 490
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 69/192 (35%)
Query: 492 SALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL--- 548
S ++ E++L+ A T AGKT VA + Q + ++ ++IY +P+++L
Sbjct: 96 SCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-----------KNKQRVIYTSPIKALSNQ 144
Query: 549 -VQEMVGNFGK-------------------------------------------DEIHLL 564
+E++ FG DE+H +
Sbjct: 145 KYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM 204
Query: 565 HD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT-LLRIKPETGLFYFDN 622
D ERG V E I + VR V LSAT+PN + A + +I + + N
Sbjct: 205 RDKERGVVWEETII-------LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN 257
Query: 623 SFRPVALEQQYI 634
FRP L Q Y+
Sbjct: 258 -FRPTPL-QHYL 267
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/339 (25%), Positives = 134/339 (39%), Gaps = 100/339 (29%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT-LLRIKPETG 872
DE+H + D ERG V E I + VR V LSAT+PN + A + +I +
Sbjct: 297 DEVHYMRDKERGVVWEETII-------LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 349
Query: 873 LFYFDNSFRPVALEQQ---------YIGVTEKKALK--RFQ-----VMNDI--------- 907
+ N FRP L+ Y+ V EK + FQ + N I
Sbjct: 350 HIVYTN-FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDS 408
Query: 908 --------------------VYE--KVMEHAGRNQLLVFVHSRKETGKTARAIRDMCL-- 943
+Y+ K++ N ++VF S+++ + A + +
Sbjct: 409 RGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNS 468
Query: 944 --EKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLF 1001
EK+ L + A + E Q+K+ + LL G IHH+G+ + + ++E LF
Sbjct: 469 DDEKEALTKIFNNAIALLPETDRELPQIKH--ILPLLRRGIGIHHSGLLPILKEVIEILF 526
Query: 1002 ADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTV 1061
+ ++VL +T T + G+N+PA TV V T+ W
Sbjct: 527 QEGFLKVLFATETFSIGLNMPAKTV------------------VFTSVRKW--------- 559
Query: 1062 IIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100
G Q RWV G + +QM GRAGR D +G
Sbjct: 560 --DGQQF------RWVSGG--EYIQMSGRAGRRGLDDRG 588
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 69/192 (35%)
Query: 492 SALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL--- 548
S ++ E++L+ A T AGKT VA + Q + ++ ++IY +P+++L
Sbjct: 194 SCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-----------KNKQRVIYTSPIKALSNQ 242
Query: 549 -VQEMVGNFGK-------------------------------------------DEIHLL 564
+E++ FG DE+H +
Sbjct: 243 KYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM 302
Query: 565 HD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT-LLRIKPETGLFYFDN 622
D ERG V E I + VR V LSAT+PN + A + +I + + N
Sbjct: 303 RDKERGVVWEETII-------LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN 355
Query: 623 SFRPVALEQQYI 634
FRP L Q Y+
Sbjct: 356 -FRPTPL-QHYL 365
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 921 LLVFVHSRKETGKTARAIRDMCL----EKDTLGQFLREGSASMEVLRTEADQVKNGELRD 976
++VFV S+K + A + + EK + F+ + ++ + + D + + R
Sbjct: 339 MVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLK--KEDRDLPQILKTRS 396
Query: 977 LLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVV 1027
LL G A+HH G+ + + L+E LF+ I+VL +T T A G+NLP TV+
Sbjct: 397 LLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVI 447
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 559 DEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 617
DE+H ++D+ RG V E +I + V+ + LSAT+PN + A + + +
Sbjct: 154 DEVHYVNDQDRGVVWEEVII-------MLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 206
Query: 618 FYFDNSFRPVALEQQYIGVTEKKAL 642
+ RPV LE I + KK L
Sbjct: 207 YVISTPKRPVPLE---INIWAKKEL 228
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 815 DEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DE+H ++D+ RG V E +I + V+ + LSAT+PN + A + + +
Sbjct: 154 DEVHYVNDQDRGVVWEEVII-------MLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 206
Query: 874 FYFDNSFRPVALEQQYIGVTEKKAL 898
+ RPV LE I + KK L
Sbjct: 207 YVISTPKRPVPLE---INIWAKKEL 228
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQM 1087
DR ++E FA+ +LVST + G+++P V++ I NPE+ G + Q+
Sbjct: 629 DRVMLE--FAEGRYDILVSTTVIEVGIDVPRANVMV----IENPER-----FGLAQLHQL 677
Query: 1088 LGRAGR 1093
GR GR
Sbjct: 678 RGRVGR 683
>pdb|3MYV|A Chain A, Crystal Structure Of A Susd Superfamily Protein (Bvu_0732)
F Bacteroides Vulgatus Atcc 8482 At 1.80 A Resolution
pdb|3MYV|B Chain B, Crystal Structure Of A Susd Superfamily Protein (Bvu_0732)
F Bacteroides Vulgatus Atcc 8482 At 1.80 A Resolution
Length = 454
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 79 YDFTRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFIQEAL 124
Y +T+ KGA+L + +D +VG P Q Y+ ++ ++EA+
Sbjct: 130 YPYTKDKGASLGAPLIDHLVGTYENPPRSTVAQAYDFIIETLEEAV 175
>pdb|2Z6V|A Chain A, Crystal Structure Of Sulfotransferase Stf9 From
Mycobacterium Avium
Length = 414
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 1001 FADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFAD-----RHIQVLVSTATLAWGVN 1055
+ R++QVL STA +W + +P+H+V L++ +F D H +T +L
Sbjct: 229 YQKRYLQVLQSTAPGSWSLKMPSHSVHIEALLK-VFPDARLIWAHRDPYKATGSLCNLWR 287
Query: 1056 LPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRP 1094
LP V+ N E E+G L + QM RP
Sbjct: 288 LPQSLVM-------NTELLDQTEMGRLAMWQMRYHVDRP 319
>pdb|2A2F|X Chain X, Crystal Structure Of Sec15 C-Terminal Domain
Length = 325
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 1478 LSSNGWL---SPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIM 1534
LS+ WL P +A+ + MI+ + DS+ +LPH +R E E ++ IM
Sbjct: 203 LSAYDWLLVEPPGIASAFITDMISYLKSTFDSFAFKLPHIAQAACRRTFEHIAEKIYSIM 262
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 498 ENLLLCAPTGAGKTNVALL 516
+N L+CAPTG+GKT V++L
Sbjct: 23 KNALICAPTGSGKTFVSIL 41
>pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5
(Melanoma Differentiation-Associated Protein 5),
Dech-Domain
Length = 216
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 486 QSRLCKSALESDENLLLCAPTGAGKTNVAL 515
Q + + ALE +N+++C PTG+GKT VA+
Sbjct: 38 QMEVAQPALEG-KNIIICLPTGSGKTRVAV 66
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 498 ENLLLCAPTGAGKTNVALL 516
+N ++CAPTG GKT V+LL
Sbjct: 28 KNTIICAPTGCGKTFVSLL 46
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 498 ENLLLCAPTGAGKTNVALL 516
+N ++CAPTG GKT V+LL
Sbjct: 29 KNTIICAPTGCGKTFVSLL 47
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 498 ENLLLCAPTGAGKTNVALL 516
+N ++CAPTG GKT V+LL
Sbjct: 20 KNTIICAPTGCGKTFVSLL 38
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 498 ENLLLCAPTGAGKTNVALL 516
+N L+CAPTG+GKT V++L
Sbjct: 264 KNALICAPTGSGKTFVSIL 282
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 498 ENLLLCAPTGAGKTNVALL 516
+N L+CAPTG+GKT V++L
Sbjct: 264 KNALICAPTGSGKTFVSIL 282
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 498 ENLLLCAPTGAGKTNVALL 516
+N ++CAPTG GKT V+LL
Sbjct: 20 KNTIICAPTGCGKTFVSLL 38
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 486 QSRLCKSALESDENLLLCAPTGAGKTNVAL 515
Q + + ALE +N+++C PTG GKT VA+
Sbjct: 12 QMEVAQPALEG-KNIIICLPTGCGKTRVAV 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,079,974
Number of Sequences: 62578
Number of extensions: 1856233
Number of successful extensions: 4274
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4156
Number of HSP's gapped (non-prelim): 84
length of query: 1689
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1577
effective length of database: 7,964,601
effective search space: 12560175777
effective search space used: 12560175777
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)