BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14582
(1689 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 1132 bits (2928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/654 (82%), Positives = 587/654 (89%), Gaps = 35/654 (5%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
DEIHLLHDERGPVLEAL+ARTIRNIE TQE+VRLVGLSATLPNY+DVAT LR+KP+ GLF
Sbjct: 615 DEIHLLHDERGPVLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLF 674
Query: 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934
YFDNS+RPV+LEQQYIGVTEKKALKRFQVMN+IVYEK MEHAGRNQ+LVFVHSRKETGKT
Sbjct: 675 YFDNSYRPVSLEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKT 734
Query: 935 ARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDR 994
ARA+RDMCLE+DTLG FL+EGSASMEVLRTEA+QVKN EL++LLPYGFAIHHAGMTRVDR
Sbjct: 735 ARAVRDMCLEQDTLGSFLKEGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDR 794
Query: 995 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGV 1054
TLVEDLFADRHIQVLVSTATLAWGV
Sbjct: 795 -----------------------------------TLVEDLFADRHIQVLVSTATLAWGV 819
Query: 1055 NLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYY 1114
NLPAHTVIIKGTQ+YNPEKGRWVEL ALDVLQMLGRAGRPQYDTKGEG+LITNHSELQ+Y
Sbjct: 820 NLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFY 879
Query: 1115 LSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGIS 1174
LSLLN QLP+ESQ ISKLPDMLNAEIVLGTVQ+L+DAV WLGYTYLYIRMLR P LYG+S
Sbjct: 880 LSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGVS 939
Query: 1175 HDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMA 1234
HDA+K DPLLE HRADL+HTAA LERSGLIKYDRK+GH QVT+LGRIASHYY THETM
Sbjct: 940 HDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETML 999
Query: 1235 TYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKV 1294
TYNQLLK TLSEIELFRVFSLS EFRHI+VREEEKLELQKLMER PIPIKES +E SAKV
Sbjct: 1000 TYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPIPIKESIEEHSAKV 1059
Query: 1295 NILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVD 1354
N+LLQAYISQLKLEGFALMSDMVF+TQSAARLMRAIFEIVL RGWAQLADK L+LCKM+D
Sbjct: 1060 NVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMID 1119
Query: 1355 RRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVH 1414
RRMWQSM+PLRQF+K+P+EI KK+EKK+FPW RLYDL P+E+GELIRVPKLGKTIHK+VH
Sbjct: 1120 RRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIRVPKLGKTIHKFVH 1179
Query: 1415 QFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAI 1468
QFPKLEL+THIQPITR TLRVELTI+PDFQWDEK+HG SEGFW+L+EDVDSE I
Sbjct: 1180 QFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELI 1233
Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/563 (73%), Positives = 475/563 (84%), Gaps = 11/563 (1%)
Query: 1 MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVCSLVGKLEGTRMGDRFMRTK 60
MADAAARQLQYEYKANSNLVLQADVRLIER RDEATGEVCSLVGKL+GTRMGDR+ RTK
Sbjct: 1 MADAAARQLQYEYKANSNLVLQADVRLIERPRRDEATGEVCSLVGKLDGTRMGDRYQRTK 60
Query: 61 PIKAEERKVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFI 120
P K EERKVKRQKRDEAQYDF RMKGATLLSEG+DEMVGI+YRPKTQETRQTYEVLLSFI
Sbjct: 61 PEKTEERKVKRQKRDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFI 120
Query: 121 QEALGDQPRDILCGAADEVLTVLKNDRMKEKEKKKETENLLGSLAEERFALLVNLGKKIT 180
QEALGDQPRDILCGAADE+L VLKNDR+K++E+KK+ ++LLG++ +ERFALLVNLGKKIT
Sbjct: 121 QEALGDQPRDILCGAADEILAVLKNDRLKDRERKKDIDSLLGAVTDERFALLVNLGKKIT 180
Query: 181 DFGAE-----QKSTTAEENIDDTYGINVQFEESEDEDDEDTFGEVREAEELDDEGEEARV 235
DFG++ + EE ID+TYGINVQFEESE+E D D +GE+R+ ++ DEGEEAR+
Sbjct: 181 DFGSDAVNALTAAPNNEEQIDETYGINVQFEESEEESDNDMYGEIRD-DDAQDEGEEARI 239
Query: 236 NTAIHAENLAGGEDAEGTGRKKDKSLHPLDIDAYWLQRRLSKIYDDAMVSQAKAGEVLNI 295
+ +HAENLA E A KK++SLHPLDIDAYWLQR LSK Y DAMVSQ+KA +VL I
Sbjct: 240 DHTLHAENLANEEAANNV--KKERSLHPLDIDAYWLQRCLSKFYKDAMVSQSKAADVLKI 297
Query: 296 LKSAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASSQSESERQKLRDTMSE 355
LK A DDRD ENQLVLLLGYDCFDFIK LK RQM+LYCT+LAS+Q++SERQ++R+ M
Sbjct: 298 LKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASAQTDSERQRIREKMRG 357
Query: 356 DPALAKILRQLDTGKNEDGDANDSADARQSTSIRHQMGQGGGDGVAVVAGTRQVLDLEDL 415
+ ALAKILRQLDTGK+ED + +AR S + GG VAG RQ+L+LE++
Sbjct: 358 NSALAKILRQLDTGKSED---QEEGEARGSKRGKGDAEDGGAAAAGQVAGVRQLLELEEM 414
Query: 416 QFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHA 475
F+ GSHFM+NKRC+LPDGS+RKQRKGYEEVHVPALKP P +E L P+DKLP+YVQ
Sbjct: 415 AFTQGSHFMANKRCQLPDGSYRKQRKGYEEVHVPALKPVPFDANEELQPVDKLPKYVQPV 474
Query: 476 FEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINAD 535
FE FKTLNRIQSRL K+AL+SDEN+LLCAPTGAGKTNVALL M++EIGKHIN DGTINA
Sbjct: 475 FEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQ 534
Query: 536 EFKIIYVAPMRSLVQEMVGNFGK 558
+FKIIYVAPM+SLVQEMVGNFG+
Sbjct: 535 DFKIIYVAPMKSLVQEMVGNFGR 557
Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust.
Identities = 186/227 (81%), Positives = 212/227 (93%)
Query: 1460 VEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADII 1519
E + S+AIRLIQACVDVLSSNGWLSPAVAAME+AQM+TQAMWSKDSYLKQLPHF+ +I+
Sbjct: 1916 TEQILSKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFSPEIV 1975
Query: 1520 KRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISS 1579
KRCTEK +ETVFDIMELED+DR RLLQLS+ Q+ADVARFCNRYPNIEL+YEV++KDRI+S
Sbjct: 1976 KRCTEKKIETVFDIMELEDEDRTRLLQLSDLQMADVARFCNRYPNIELNYEVVDKDRINS 2035
Query: 1580 GSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIK 1639
GS+VNVVV L+REDEVTGPVIAPF+PQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAK+K
Sbjct: 2036 GSTVNVVVQLEREDEVTGPVIAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVK 2095
Query: 1640 LDFVAPNPGHHSYALYFMSDAYLGCDQEYKFSIDVSEYYSGGESDSD 1686
LDFVAP+PG H Y LY+MSD+YLGCDQEYKFSI+V ++ S ES+SD
Sbjct: 2096 LDFVAPSPGKHDYTLYYMSDSYLGCDQEYKFSIEVGDFQSESESESD 2142
Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 185/689 (26%), Positives = 321/689 (46%), Gaps = 72/689 (10%)
Query: 807 EMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLR 866
++V F DE+ L+ E GPVLE + +R ++ +R+V LSA+L + +DVA L
Sbjct: 1445 QLVNLFIVDELQLVGGEEGPVLEIVCSRMRYISSQIEKQIRIVALSASLTDARDVAQWLG 1504
Query: 867 IKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVH 926
P F F S RP+ LE G R M+ VY +++++ ++VFV
Sbjct: 1505 CNP-NATFNFHPSVRPIPLELHIQGYNVTHNATRIATMSKPVYNAILKYSAHKPVIVFVS 1563
Query: 927 SRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHH 986
SRK+ TA + +F A E ++ +++ + L++ L G A H
Sbjct: 1564 SRKQARLTAIDVLTYAASDLQPNRFFH---AEEEDIKPFLERMTDKTLKETLAQGVAYLH 1620
Query: 987 AGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVS 1046
G++ D LVE LF +QV V
Sbjct: 1621 EGLS-----------------------------------ASDHRLVEQLFDSGAVQVAVI 1645
Query: 1047 TATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLIT 1106
+ L WG+++ AH VII TQ YN + + + DVLQM+GRA RP D + VL+
Sbjct: 1646 SRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMC 1705
Query: 1107 NHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLR 1166
S+ ++ +N LP+ES + ++ D NAE+V T++N +DAV +L +T+LY R+ +
Sbjct: 1706 QSSKKDFFKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRLTQ 1765
Query: 1167 APNLY---GISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIA 1223
PN Y G++H L + H ++L+ LE+S I + + + LG IA
Sbjct: 1766 NPNYYNLQGVTHRHLSD------HLSELVENTLSDLEQSKCISVEDDMDTLPLN-LGMIA 1818
Query: 1224 SHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPI 1283
++YY + T+ ++ L L + S + E+ + VR E+ L+ L +R P +
Sbjct: 1819 AYYYINYTTIELFSLSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKL 1878
Query: 1284 KEST------DEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYR 1337
++P K N+LLQA++S+L+L G L D + A RL++A +++
Sbjct: 1879 TGPNETAPKFNDPHIKTNLLLQAHLSRLQL-GPELQGDTEQILSKAIRLIQACVDVLSSN 1937
Query: 1338 GWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIG 1397
GW A A+ L +MV + MW S L+Q EI+K+ +K E ++D+ E
Sbjct: 1938 GWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFSPEIVKRCTEKKI--ETVFDIMELEDE 1995
Query: 1398 ELIRVPKLG----KTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGG- 1452
+ R+ +L + ++ +++P +EL + R + + + ++++ G
Sbjct: 1996 DRTRLLQLSDLQMADVARFCNRYPNIELNYEVVDKDRINSGSTVNVVVQLEREDEVTGPV 2055
Query: 1453 ---------SEGFWILVEDVDSEAIRLIQ 1472
EG+W+++ D + ++ I+
Sbjct: 2056 IAPFFPQKREEGWWVVIGDPKTNSLLSIK 2084
Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 96/109 (88%), Positives = 105/109 (96%)
Query: 559 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 618
DEIHLLHDERGPVLEAL+ARTIRNIE TQE+VRLVGLSATLPNY+DVAT LR+KP+ GLF
Sbjct: 615 DEIHLLHDERGPVLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLF 674
Query: 619 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLV 667
YFDNS+RPV+LEQQYIGVTEKKALKRFQVMN+IVYEK MEHAGRNQ+LV
Sbjct: 675 YFDNSYRPVSLEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLV 723
Score = 177 bits (449), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 75/91 (82%), Positives = 86/91 (94%)
Query: 669 TLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFV 728
TLRVELTI+PDFQWDEK+HG SEGFW+L+EDVDSE++LHHE+FLLK +Y+ D+H +KFFV
Sbjct: 1197 TLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILHHEFFLLKQKYSQDEHQLKFFV 1256
Query: 729 PVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
PVFEPLPPQYFLRIVSDRWIGAET LPVSFR
Sbjct: 1257 PVFEPLPPQYFLRIVSDRWIGAETQLPVSFR 1287
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 68/98 (69%), Gaps = 9/98 (9%)
Query: 721 DHVVKFFVPVFEPLPPQYFLRIVSDRWIGA----ETILPVSFRLPRGAGKTNVALLCMLQ 776
D + K+ PVFE + RI S + A E +L + P GAGKTNVALL M++
Sbjct: 465 DKLPKYVQPVFEGF--KTLNRIQSRLYKAALDSDENMLLCA---PTGAGKTNVALLTMMR 519
Query: 777 EIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 814
EIGKHIN DGTINA +FKIIYVAPM+SLVQEMVGNFG+
Sbjct: 520 EIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGR 557
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 110/271 (40%), Gaps = 55/271 (20%)
Query: 451 LKPKPMGPDETL----VPIDKL--PRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCA 504
L K M P E L +PI L P++ + F N IQ+++ + SDEN+ + A
Sbjct: 1291 LPEKNMPPTELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGA 1350
Query: 505 PTGAGKTNVALLCMLQ------------------------------------EIGKHINA 528
PTG+GK +A +++ ++ K
Sbjct: 1351 PTGSGKMTIAEFAIMRLFTTQSDARCVYLVSEEALADLVFADWHSKFGSLDIKVVKLTGE 1410
Query: 529 DGT------------INADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALI 576
GT AD++ ++ + ++V F DE+ L+ E GPVLE +
Sbjct: 1411 TGTDLKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEEGPVLEIVC 1470
Query: 577 ARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGV 636
+R ++ +R+V LSA+L + +DVA L P F F S RP+ LE G
Sbjct: 1471 SRMRYISSQIEKQIRIVALSASLTDARDVAQWLGCNP-NATFNFHPSVRPIPLELHIQGY 1529
Query: 637 TEKKALKRFQVMNDIVYEKVMEHAGRNQLLV 667
R M+ VY +++++ ++V
Sbjct: 1530 NVTHNATRIATMSKPVYNAILKYSAHKPVIV 1560
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 107/228 (46%), Gaps = 23/228 (10%)
Query: 1454 EGFWILVEDV--DSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQL 1511
EGF ++ + V A RL++A +++ + GW A + + +MI + MW + L+Q
Sbjct: 1073 EGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMIDRRMWQSMTPLRQF 1132
Query: 1512 PHFNADIIKRCTEKGVE--TVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSY 1569
+I K+ +K ++D+ E + +R+ +L ++ + +F +++P +ELS
Sbjct: 1133 KKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIRVPKLGKT----IHKFVHQFPKLELST 1188
Query: 1570 EVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKR 1629
+ R + + + + +++V G + EG+WV+I D + +L +
Sbjct: 1189 HIQPITRGTLRVELTITPDFQWDEKVHG----------QSEGFWVLIEDVDSELILHHEF 1238
Query: 1630 LTLQQKA---KIKLDFVAP--NPGHHSYALYFMSDAYLGCDQEYKFSI 1672
L+QK + +L F P P Y L +SD ++G + + S
Sbjct: 1239 FLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSF 1286
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 1087 bits (2811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/654 (78%), Positives = 574/654 (87%), Gaps = 35/654 (5%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
DEIHLLHD+RGPVLEAL+AR IRNIE TQEDVRL+GLSATLPNY+DVAT LR+ P GLF
Sbjct: 615 DEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLF 674
Query: 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934
YFDNSFRPV LEQ Y+G+TEKKA+KRFQ+MN+IVYEK+MEHAG+NQ+LVFVHSRKETGKT
Sbjct: 675 YFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKT 734
Query: 935 ARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDR 994
ARAIRDMCLEKDTLG FLREGSAS EVLRTEA+Q KN EL+DLLPYGFAIHHAGMTRVDR
Sbjct: 735 ARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDR 794
Query: 995 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGV 1054
TLVEDLFAD+HIQVLVSTATLAWGV
Sbjct: 795 -----------------------------------TLVEDLFADKHIQVLVSTATLAWGV 819
Query: 1055 NLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYY 1114
NLPAHTVIIKGTQ+Y+PEKGRW ELGALD+LQMLGRAGRPQYDTKGEG+LIT+H ELQYY
Sbjct: 820 NLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYY 879
Query: 1115 LSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGIS 1174
LSLLN QLP+ESQM+SKLPDMLNAEIVLG VQN KDAV WLGY YLYIRMLR+P LYGIS
Sbjct: 880 LSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGIS 939
Query: 1175 HDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMA 1234
HD LK DPLL+ R DL+HTAAL L+++ L+KYD+K+G+ QVTELGRIASHYY T++T+
Sbjct: 940 HDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQ 999
Query: 1235 TYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKV 1294
TYNQLLKPTLSEIELFRVFSLS EF++ITVREEEKLELQKL+ER PIP+KES +EPSAK+
Sbjct: 1000 TYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKI 1059
Query: 1295 NILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVD 1354
N+LLQA+ISQLKLEGFALM+DMV+VTQSA RLMRAIFEIVL RGWAQL DK L+LCKM+D
Sbjct: 1060 NVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMID 1119
Query: 1355 RRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVH 1414
+RMWQSM PLRQFRK+PEE++KKIEKKNFP+ERLYDL NEIGELIR+PK+GKTIHKYVH
Sbjct: 1120 KRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVH 1179
Query: 1415 QFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAI 1468
FPKLEL+ H+QPITRSTL+VELTI+PDFQWDEK+HG SE FWILVEDVDSE I
Sbjct: 1180 LFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVI 1233
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/731 (58%), Positives = 521/731 (71%), Gaps = 72/731 (9%)
Query: 1 MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVCSLVGKLEGTRMGDRFMRTK 60
MAD AR LQYEYKANSNLVLQAD LI+R RDE TGEV SLVGKLEGTRMGD+ RTK
Sbjct: 1 MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK 60
Query: 61 PIKAEERKVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFI 120
P EER+ KR+KRDE ++D +MKG TLLSEG+DEMVGIIY+PKT+ETR+TYEVLLSFI
Sbjct: 61 PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI 120
Query: 121 QEALGDQPRDILCGAADEVLTVLKNDRMKEKEKKKETENLLGSLAEERFALLVNLGKKIT 180
Q ALGDQPRDILCGAADEVL VLKN+++++KE++KE + LLG + R+ +LVNLGKKIT
Sbjct: 121 QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT 180
Query: 181 DFGAEQKSTTAEENIDDTYGINVQFEESEDEDDEDTFGEVREAEELDD-EGEEARVNTAI 239
D+G +++ ++NID+TYG+NVQFE E+E DED +GEVRE DD EG+EA V +
Sbjct: 181 DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL 240
Query: 240 HAENLAGGEDAEGTGRKKDKSLHPLDIDAYWLQRRLSKIYDDAMVSQAKAGEVLNILKSA 299
A +A GE + +KKD LHP DIDA+WLQR+LS+ YDDA+VSQ KA EVL ILK+A
Sbjct: 241 SANLVASGELM--SSKKKD--LHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTA 296
Query: 300 GDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASSQSESERQKLRDTMSEDPAL 359
DDR+ ENQLVLLLG++ FDFIK+L+++R MILYCTLLAS+QSE+E++++ M DP L
Sbjct: 297 SDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPEL 356
Query: 360 AKILRQLDTGKNED------GDANDSADARQSTSIRHQMGQGGGDGVAVVAGTRQVLDLE 413
+K L QL + ED +R T + GG+ +A RQVLDLE
Sbjct: 357 SKFLYQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALA----PRQVLDLE 412
Query: 414 DLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQ 473
DL F+ GSHFM+NKRC+LPDGSFR+QRKGYEEVHVPALKPKP G +E L+P++KLP+Y Q
Sbjct: 413 DLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQ 472
Query: 474 HAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGA---------------------GKTN 512
FE FKTLNRIQS+L ++ALE+DENLLLCAPTGA G N
Sbjct: 473 AGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTIN 532
Query: 513 V---------ALLCMLQEI----GKHINADGTINAD-------------EFKIIYVAPMR 546
V + ++QE+ GK + G A+ +II P +
Sbjct: 533 VDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEK 592
Query: 547 ----------SLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLS 596
++V DEIHLLHD+RGPVLEAL+AR IRNIE TQEDVRL+GLS
Sbjct: 593 WDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLS 652
Query: 597 ATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKV 656
ATLPNY+DVAT LR+ P GLFYFDNSFRPV LEQ Y+G+TEKKA+KRFQ+MN+IVYEK+
Sbjct: 653 ATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKI 712
Query: 657 MEHAGRNQLLV 667
MEHAG+NQ+LV
Sbjct: 713 MEHAGKNQVLV 723
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/226 (76%), Positives = 203/226 (89%), Gaps = 4/226 (1%)
Query: 1461 EDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIK 1520
E++ S+AIRLIQACVDVLSSNGWLSPA+AAME+AQM+TQAMWSKDSYLKQLPHF ++ IK
Sbjct: 1913 EEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIK 1972
Query: 1521 RCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSG 1580
RCT+KGVE+VFDIME+ED++R LLQL++SQ+ADVARFCNRYPNIELSYEV++KD I SG
Sbjct: 1973 RCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSG 2032
Query: 1581 SSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIKL 1640
V V+V L+RE+EVTGPVIAP +PQKREEGWWVVIGD K+NSL+SIKRLTLQQKAK+KL
Sbjct: 2033 GPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKL 2092
Query: 1641 DFVAPNPGHHSYALYFMSDAYLGCDQEYKFSIDVSEYYSGGESDSD 1686
DFVAP G H+Y LYFMSDAY+GCDQEYKFS+DV E E+DSD
Sbjct: 2093 DFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKE----AETDSD 2134
Score = 263 bits (671), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 205/679 (30%), Positives = 329/679 (48%), Gaps = 75/679 (11%)
Query: 812 FGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPET 871
F DE+HL+ E GPVLE + +R + +R+V LS++L N KDVA L T
Sbjct: 1451 FVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSA-T 1509
Query: 872 GLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKET 931
F F + RPV LE G R M VY + +H+ + ++VFV SRK+T
Sbjct: 1510 STFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQT 1569
Query: 932 GKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTR 991
TA I C +FL TE +DL+PY +
Sbjct: 1570 RLTAIDILTTCAADIQRQRFLH---------CTE---------KDLIPYLEKLS------ 1605
Query: 992 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLA 1051
D TL E L L L G+ + ++R LVE LF+ IQV+V++ +L
Sbjct: 1606 -DSTLKETL--------LNGVGYLHEGL-----SPMERRLVEQLFSSGAIQVVVASRSLC 1651
Query: 1052 WGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL 1111
WG+N+ AH VII TQ YN + +V+ DVLQM+G A RP D +G V++ S+
Sbjct: 1652 WGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKK 1711
Query: 1112 QYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLY 1171
++ L LPVES + + D NAEIV T++N +DAV +L +T+LY RM + PN Y
Sbjct: 1712 DFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYY 1771
Query: 1172 ---GISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVT--ELGRIASHY 1226
GISH L + H ++L+ LE+S I + + M V LG IA++Y
Sbjct: 1772 NLQGISHRHLSD------HLSELVEQTLSDLEQSKCISIEDE---MDVAPLNLGMIAAYY 1822
Query: 1227 YCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKES 1286
Y + T+ ++ L L + S + E+ +I +R E L++L ++ P +
Sbjct: 1823 YINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNP 1882
Query: 1287 T-DEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADK 1345
++P K N+LLQA++S+++L L SD + A RL++A +++ GW A
Sbjct: 1883 KFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALA 1941
Query: 1346 ALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKL 1405
A+ L +MV + MW S L+Q E IK+ K E ++D+ E E + +L
Sbjct: 1942 AMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGV--ESVFDIMEMEDEERNALLQL 1999
Query: 1406 GKT----IHKYVHQFPKLELATHIQPITRSTLRV--ELTISPDFQWDEKLHGG------- 1452
+ + ++ +++P +EL+ + + + ++R + + + +E++ G
Sbjct: 2000 TDSQIADVARFCNRYPNIELSYEV--VDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFP 2057
Query: 1453 ---SEGFWILVEDVDSEAI 1468
EG+W+++ D S ++
Sbjct: 2058 QKREEGWWVVIGDAKSNSL 2076
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 73/92 (79%), Positives = 85/92 (92%)
Query: 668 STLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFF 727
STL+VELTI+PDFQWDEK+HG SE FWILVEDVDSEV+LHHEYFLLK++YA D+H++ FF
Sbjct: 1196 STLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFF 1255
Query: 728 VPVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
VPVFEPLPPQYF+R+VSDRW+ ET LPVSFR
Sbjct: 1256 VPVFEPLPPQYFIRVVSDRWLSCETQLPVSFR 1287
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/54 (85%), Positives = 51/54 (94%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 814
P GAGKTNVAL+CML+EIGKHIN DGTIN D+FKIIY+APMRSLVQEMVG+FGK
Sbjct: 504 PTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 557
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 116/302 (38%), Gaps = 69/302 (22%)
Query: 453 PKPMGPDETLVPIDKLPRYV--QHAFED-----FKTLNRIQSRLCKSALESDENLLLCAP 505
P+ P L+ + LP AFE F N IQ+++ + SD+N+ + AP
Sbjct: 1292 PEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAP 1351
Query: 506 TGAGKT---NVALLCML--------------QEIGKHINAD-----------------GT 531
TG+GKT A+L ML + + + + D G
Sbjct: 1352 TGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGE 1411
Query: 532 INAD-----EFKIIYVAP-----------MRSLVQEMVGNFGKDEIHLLHDERGPVLEAL 575
+ D + II P R VQ + F DE+HL+ E GPVLE +
Sbjct: 1412 TSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQN-INLFVVDEVHLIGGENGPVLEVI 1470
Query: 576 IARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIG 635
+R + +R+V LS++L N KDVA L T F F + RPV LE G
Sbjct: 1471 CSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSA-TSTFNFHPNVRPVPLELHIQG 1529
Query: 636 VTEKKALKRFQVMNDIVYEKVMEHA----------GRNQLLVSTLRVELTISPDFQWDEK 685
R M VY + +H+ R Q ++ + + T + D Q
Sbjct: 1530 FNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRF 1589
Query: 686 LH 687
LH
Sbjct: 1590 LH 1591
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 102/230 (44%), Gaps = 27/230 (11%)
Query: 1454 EGFWILVE--DVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQL 1511
EGF ++ + V A RL++A +++ + GW + + +MI + MW L+Q
Sbjct: 1073 EGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQF 1132
Query: 1512 PHFNADIIKRCTEKG--VETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSY 1569
+++K+ +K E ++D+ E + +R+ ++ ++ + ++ + +P +ELS
Sbjct: 1133 RKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKT----IHKYVHLFPKLELSV 1188
Query: 1570 EVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKR 1629
+ R + + + + +++V G E +W+++ D + +L +
Sbjct: 1189 HLQPITRSTLKVELTITPDFQWDEKVHG----------SSEAFWILVEDVDSEVILHHEY 1238
Query: 1630 LTLQQKAKIKLD-----FVAP--NPGHHSYALYFMSDAYLGCDQEYKFSI 1672
L KAK D F P P Y + +SD +L C+ + S
Sbjct: 1239 FLL--KAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSF 1286
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 1002 bits (2590), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/765 (62%), Positives = 584/765 (76%), Gaps = 93/765 (12%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL---------------- 804
P GAGKTNVALL MLQEIG H+ DG++ DEFKI+Y+APM+SL
Sbjct: 498 PTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFG 557
Query: 805 --VQEMVGNFGK---------------------------------------DEIHLLHDE 823
V EM G+ DEIHLLHD+
Sbjct: 558 ITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDD 617
Query: 824 RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPV 883
RGPVLE+++ RTIR +E ++ RLVGLSATLPNY+DVAT LR+KPE L +FDNS+RPV
Sbjct: 618 RGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRVKPE-HLHFFDNSYRPV 676
Query: 884 ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCL 943
LEQQYIGVTEKKALKRFQ MN++VY+K+MEHAG++Q+LVFVHSRKET KTA+AIRD CL
Sbjct: 677 PLEQQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACL 736
Query: 944 EKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFAD 1003
EKDTL F+REGSAS E+LRTEA+Q KN +L+DLLPYGFAIHHAGM RVDR
Sbjct: 737 EKDTLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDR--------- 787
Query: 1004 RHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVII 1063
TLVEDLFADRHIQVL STATLAWGVNLPAHTVII
Sbjct: 788 --------------------------TLVEDLFADRHIQVLFSTATLAWGVNLPAHTVII 821
Query: 1064 KGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLP 1123
KGTQIYNPEKGRW ELGALD++QMLGRAGRPQYD +GEG+LITNHSELQYYLSL+N QLP
Sbjct: 822 KGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLP 881
Query: 1124 VESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPL 1183
VESQM+S+L DMLNAE+VLGTV ++ +A WLGYT+L++RML+ P LYGI+H+ + DPL
Sbjct: 882 VESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNPTLYGITHEQARADPL 941
Query: 1184 LECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPT 1243
LE RADLIHTA + L+++GLIKYD++SG +Q TELGRIASH+YCT+E+M TYN+LL T
Sbjct: 942 LEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIASHFYCTYESMQTYNKLLVET 1001
Query: 1244 LSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKVNILLQAYIS 1303
S+I+LFR+FS+S EF+ ++VR+EEKLELQK+ E APIPIKE+ DE SAK N+LLQAYIS
Sbjct: 1002 CSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPIPIKENLDEASAKTNVLLQAYIS 1061
Query: 1304 QLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSP 1363
QLKLEGFAL +DMVFV QSA RL RA+FEIVL+RGWA LA K L+LCKMV +R W S++P
Sbjct: 1062 QLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNP 1121
Query: 1364 LRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELAT 1423
L QF+KIP E+++ I+KKN+ ++RLYDL +++G+LI++PK+GK + K++ QFPKLE+ T
Sbjct: 1122 LHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIKMPKMGKPLFKFIRQFPKLEMTT 1181
Query: 1424 HIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAI 1468
IQPITR+T+R+ELTI+PDF+WDEK+HG +EGFWI +ED D E I
Sbjct: 1182 LIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIEDTDGEKI 1226
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/731 (49%), Positives = 478/731 (65%), Gaps = 79/731 (10%)
Query: 1 MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVCSLVGK-LEGTRMGDRFMRT 59
MAD AR QYEY+ NSNLVL D L +RR R+E TGEV + K + +MGDR ++
Sbjct: 1 MADELARIQQYEYRQNSNLVLSVDYNLTDRRGREEPTGEVLPITDKEMRKMKMGDRAIKG 60
Query: 60 K-PIKAEERKVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLS 118
K P++ +++K K++ ++AQ G +L + +E++G Y+P+TQET+QTYEV+LS
Sbjct: 61 KAPVQDQKKKRKKKDDEKAQ-----QFGRNVLVDN-NELMGA-YKPRTQETKQTYEVILS 113
Query: 119 FIQEALGDQPRDILCGAADEVLTVLKNDRMKEKEKKKETENLLGSLAEERFALLVNLGKK 178
FI +ALGD PR++LCGAADEVL LKND+ ++KEKKKE E LLG L ++R A+L+NL KK
Sbjct: 114 FILDALGDVPREVLCGAADEVLLTLKNDKFRDKEKKKEVEALLGPLTDDRIAVLINLSKK 173
Query: 179 ITDFGAEQKSTT-AEENIDDTYGINVQFEESEDEDDEDTFGEVREAEELDDEGEEARVNT 237
I+DF E+++ + +I + G+NVQF+ E+EDD E++ + ++ EE V+T
Sbjct: 174 ISDFSIEEENKPEGDGDIYENEGVNVQFDSDEEEDDGGMVNEIK-GDSEEESEEEEGVDT 232
Query: 238 AIHAENLAGGEDAEGTGRKKDKSLHPLDIDAYWLQRRLSKIYDDAMVSQAKAGEVLNILK 297
A L G +K LHP DIDA+W+QR L+K + D +++Q K EV+ ILK
Sbjct: 233 DYTA-TLKGDGHLTEDEQKARGILHPRDIDAHWIQRSLAKYFKDPLIAQQKQTEVIGILK 291
Query: 298 SAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASSQSESERQKLRDTMSEDP 357
+A DDRDAENQLVLLLG+D F+FIK L++ R MILYCTLL + +E ER ++ D M P
Sbjct: 292 NAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCTLLRQA-NEKERLQIEDDMRSRP 350
Query: 358 ALAKILRQLDTGKNEDGDANDSADARQSTSIRHQMGQGGGDGVAVVAGT----RQVLDLE 413
L IL L + ++G +++ + + A+ AG R++LDL
Sbjct: 351 ELHPILALLQ--ETDEGSVVQVEKSKRDAEKSKKAATAANE--AISAGQWQAGRKMLDLN 406
Query: 414 DLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQ 473
DL FS GSH MSNKRCELPDGS+R+Q+K YEE+HVPALKP+P E LV + +LP++ Q
Sbjct: 407 DLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIHVPALKPRPFAEGEKLVSVSELPKWAQ 466
Query: 474 HAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTIN 533
AF+ +K+LNRIQSRLC SAL S E+LLLCAPTGAGKTNVALL MLQEIG H+ DG++
Sbjct: 467 PAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVK 526
Query: 534 ADEFKIIYVAPMRSL------------------VQEMVGNFGK----------------- 558
DEFKI+Y+APM+SL V EM G+
Sbjct: 527 LDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKEQFMATQVIVCTPEK 586
Query: 559 ----------------------DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLS 596
DEIHLLHD+RGPVLE+++ RTIR +E ++ RLVGLS
Sbjct: 587 YDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQMEQNHDECRLVGLS 646
Query: 597 ATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKV 656
ATLPNY+DVAT LR+KPE L +FDNS+RPV LEQQYIGVTEKKALKRFQ MN++VY+K+
Sbjct: 647 ATLPNYQDVATFLRVKPE-HLHFFDNSYRPVPLEQQYIGVTEKKALKRFQAMNEVVYDKI 705
Query: 657 MEHAGRNQLLV 667
MEHAG++Q+LV
Sbjct: 706 MEHAGKSQVLV 716
Score = 261 bits (667), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 117/214 (54%), Positives = 170/214 (79%), Gaps = 5/214 (2%)
Query: 1467 AIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKG 1526
A RL+QACVDVLSSNGWLSPA+ AME++QM+TQAM+S + YLKQLPH +A +++R K
Sbjct: 1918 ACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNEPYLKQLPHCSAALLERAKAKE 1977
Query: 1527 VETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVV 1586
V +VF+++ELE+DDR +LQ+ ++LADVARFCN YP+IE++ E+ N D ++S ++ +
Sbjct: 1978 VTSVFELLELENDDRSDILQMEGAELADVARFCNHYPSIEVATELEN-DVVTSNDNLMLA 2036
Query: 1587 VNLDREDEVTG---PVIAPFYPQKR-EEGWWVVIGDPKTNSLLSIKRLTLQQKAKIKLDF 1642
V+L+R++++ G PV+AP +PQKR EEGWW+VIGD ++N+LL+IKRL + +K+ ++LDF
Sbjct: 2037 VSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESNALLTIKRLVINEKSSVQLDF 2096
Query: 1643 VAPNPGHHSYALYFMSDAYLGCDQEYKFSIDVSE 1676
AP PGHH + L+F+SD+YLG DQE+ + V E
Sbjct: 2097 AAPRPGHHKFKLFFISDSYLGADQEFDVAFKVEE 2130
Score = 217 bits (553), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 186/691 (26%), Positives = 320/691 (46%), Gaps = 77/691 (11%)
Query: 812 FGKDEIHLLHDERGPVLEALIARTIRNIEATQED-VRLVGLSATLPNYKDVATLLRIKPE 870
F D++H++ G V E + +RT R I + E VR+V LS++L N +D+ L
Sbjct: 1445 FIADDLHMIGASNGAVFEVVCSRT-RYISSQLESAVRVVALSSSLTNARDLGMWLGCSA- 1502
Query: 871 TGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGR---NQLLVFVHS 927
+ F F S RPV L+ + RF M VY+ + HAG+ LVFV
Sbjct: 1503 SATFNFMPSTRPVPLDLEIKSFNLSHNASRFAAMERPVYQAICRHAGKLEPKPALVFVPV 1562
Query: 928 RKETGKTARAIRDMCLEKDTLGQFLR--EGSASMEVLRTEADQVKNGELRDLLPYGFAIH 985
R++T A A+ M L +FLR E + + L + +++ LR+ + G
Sbjct: 1563 RRQTRPVAVALLTMALADGAPKRFLRLAEHDDTFQALLAD---IEDESLRESVSCGVGFL 1619
Query: 986 HAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLV 1045
H G D HI V+ LF IQV V
Sbjct: 1620 HEGTAP----------KDVHI-------------------------VQQLFESNAIQVCV 1644
Query: 1046 STATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLI 1105
+ + + + A+ V++ TQ YN + + + D+L M+G A RP D+ + V++
Sbjct: 1645 VPRGMCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVM 1704
Query: 1106 TNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRML 1165
S+ YY L LPVES + L D NAEIV T++N +DA+ +L +T LY RM
Sbjct: 1705 CQTSKRAYYKKFLCDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMT 1764
Query: 1166 RAPNLY---GISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRI 1222
+ PN Y G +H L D L ++L+ LE S I + + + LG I
Sbjct: 1765 QNPNYYNLQGTTHRHLS-DAL-----SELVELTLKDLENSKCIAVKDEMDTVSLN-LGMI 1817
Query: 1223 ASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIP 1282
AS+YY +++T+ ++ LK L + S S EF ++ +R +E + L++L ER P
Sbjct: 1818 ASYYYISYQTIELFSMSLKEKTKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPGQ 1877
Query: 1283 IK-ESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQ 1341
+K + +P KVN+L+ A++S++KL L D + A RL++A +++ GW
Sbjct: 1878 LKNQKFTDPHVKVNLLIHAHLSRVKLTA-ELNKDTELIVLRACRLVQACVDVLSSNGWLS 1936
Query: 1342 LADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWE-RLYDLGPNEIGELI 1400
A A+ L +M+ + M+ + L+Q ++++ + K L +L ++ +++
Sbjct: 1937 PAIHAMELSQMLTQAMYSNEPYLKQLPHCSAALLERAKAKEVTSVFELLELENDDRSDIL 1996
Query: 1401 RVPKLG-KTIHKYVHQFPKLELATHIQ-PITRSTLRVELTISPDFQWDEKLHG------- 1451
++ + ++ + +P +E+AT ++ + S + L +S + D + G
Sbjct: 1997 QMEGAELADVARFCNHYPSIEVATELENDVVTSNDNLMLAVS--LERDNDIDGLAPPVVA 2054
Query: 1452 -------GSEGFWILVEDVDSEAIRLIQACV 1475
EG+W+++ D +S A+ I+ V
Sbjct: 2055 PLFPQKRKEEGWWLVIGDSESNALLTIKRLV 2085
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 61/92 (66%), Positives = 82/92 (89%)
Query: 668 STLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFF 727
+T+R+ELTI+PDF+WDEK+HG +EGFWI +ED D E +LHHE+FLLK ++ +D+HVVK
Sbjct: 1189 TTMRIELTITPDFKWDEKVHGSAEGFWIFIEDTDGEKILHHEFFLLKQKFCSDEHVVKMI 1248
Query: 728 VPVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
VP+F+P+PP Y++RIVSDRWIGAET+LP+SFR
Sbjct: 1249 VPMFDPMPPLYYVRIVSDRWIGAETVLPISFR 1280
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 109/276 (39%), Gaps = 76/276 (27%)
Query: 453 PKPMGPDETLVPIDKLP------RYVQHAFED--FKTLNRIQSRLCKSALESDENLLLCA 504
P+ P L+ + LP + Q F + FK N IQ+++ ++ ES+EN+++CA
Sbjct: 1285 PEKYPPPTELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNENVIVCA 1344
Query: 505 PTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF-------- 556
P G+GKT +A L +L +H N E K +Y+ PM + ++ ++
Sbjct: 1345 PNGSGKTAIAELAVL----RHFE-----NTPEAKAVYITPMEDMATKVYADWKRRLEPAI 1395
Query: 557 --------GKDEIHLLHDERGPVL-----------------------EALIARTIRNIEA 585
G+ + L +RG ++ + IA + I A
Sbjct: 1396 GHTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGA 1455
Query: 586 TQEDV-------------------RLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRP 626
+ V R+V LS++L N +D+ L + F F S RP
Sbjct: 1456 SNGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGMWLGCSA-SATFNFMPSTRP 1514
Query: 627 VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGR 662
V L+ + RF M VY+ + HAG+
Sbjct: 1515 VPLDLEIKSFNLSHNASRFAAMERPVYQAICRHAGK 1550
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 41/220 (18%)
Query: 1463 VDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRC 1522
V A RL +A +++ GW A + + +M+TQ W + L Q +++++
Sbjct: 1077 VAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSI 1136
Query: 1523 TEKGVETVFDIMELEDDDRLRLLQLSESQLADVA----------RFCNRYPNIELSYEVL 1572
+K FD RL L + QL D+ +F ++P +E++ +
Sbjct: 1137 DKKNYS--FD----------RLYDLDQHQLGDLIKMPKMGKPLFKFIRQFPKLEMTTLIQ 1184
Query: 1573 NKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTL 1632
R + + + + +++V G EG+W+ I D +L + L
Sbjct: 1185 PITRTTMRIELTITPDFKWDEKVHGSA----------EGFWIFIEDTDGEKILHHEFFLL 1234
Query: 1633 QQK-------AKIKLDFVAPNPGHHSYALYFMSDAYLGCD 1665
+QK K+ + P P Y + +SD ++G +
Sbjct: 1235 KQKFCSDEHVVKMIVPMFDPMPP--LYYVRIVSDRWIGAE 1272
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/763 (54%), Positives = 521/763 (68%), Gaps = 93/763 (12%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIY------------------VAPMR 802
P GAGKTNVA+LC+L E+ KH+ D + N FKI+Y + P
Sbjct: 543 PTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKRLTPYN 602
Query: 803 SLVQEMVG-----------------------------------NFGK----DEIHLLHDE 823
V E+ G N + DE+HLLHDE
Sbjct: 603 IRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEVHLLHDE 662
Query: 824 RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPV 883
RGPVLE+++AR R+ E T E VRLVGLSATLPNY DVA+ L + P+ GLFYFD+++RP
Sbjct: 663 RGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPC 722
Query: 884 ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCL 943
L+Q++IG+TEK KR Q N+ YEKVM+HAG+NQ+L+FVHSRKET KTAR IRD L
Sbjct: 723 PLKQEFIGITEKTPFKRMQTTNEACYEKVMQHAGKNQVLIFVHSRKETAKTARFIRDKAL 782
Query: 944 EKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFAD 1003
E++T+G LR +AS E+LR EAD + L+DLLPYGFAIHHAGM R DR ED
Sbjct: 783 EEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSED---- 838
Query: 1004 RHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVII 1063
LFAD IQVLVSTATLAWGVNLPAHTVII
Sbjct: 839 -------------------------------LFADGTIQVLVSTATLAWGVNLPAHTVII 867
Query: 1064 KGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLP 1123
KGTQ+Y+PEKG W EL DVLQMLGRAGRPQ+DT GEG++IT HSELQYYLSL+N QLP
Sbjct: 868 KGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQYYLSLMNQQLP 927
Query: 1124 VESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPL 1183
+ESQ + +L D LNAE+ LGTV++++D V WLGYTYLY+RMLR+P LY + + +D
Sbjct: 928 IESQFMRRLADCLNAEVSLGTVRSIEDGVDWLGYTYLYVRMLRSPALYSVGPE-YDDDKY 986
Query: 1184 LECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPT 1243
L RADL+H+AA+ LE+ L+ Y+R+SG + TELG++A+ YY TH +MA YN+LL T
Sbjct: 987 LVQKRADLLHSAAILLEKCKLLVYNRQSGTLTATELGKVAASYYVTHNSMAIYNRLLMQT 1046
Query: 1244 LSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKVNILLQAYIS 1303
S IELFRVFS S EF+HI VREEEK+EL KL+ER PIPI+E DEP+AK+N LLQ+YIS
Sbjct: 1047 TSFIELFRVFSFSDEFKHIPVREEEKVELAKLLERVPIPIRERLDEPAAKINALLQSYIS 1106
Query: 1304 QLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSP 1363
+ +L+GFAL++DMV+VTQSA R+MRAIFEI L RGW+ +A +L CKM+++R+W +MSP
Sbjct: 1107 RQRLDGFALVADMVYVTQSAGRIMRAIFEISLRRGWSSVATLSLDTCKMIEKRLWPTMSP 1166
Query: 1364 LRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELAT 1423
LRQF P E+I+++EKK FPW+R +DL P E+GEL+ VPK G+ ++ V FP+L +
Sbjct: 1167 LRQFPNCPSEVIRRVEKKEFPWQRYFDLDPAELGELVGVPKEGRRVYNMVQSFPRLSVEA 1226
Query: 1424 HIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSE 1466
H+QPITRS +RVEL I+ F WD+ L G SE FWILVEDVD +
Sbjct: 1227 HVQPITRSLVRVELVINSQFNWDDHLSGTSEAFWILVEDVDGD 1269
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 275/741 (37%), Positives = 406/741 (54%), Gaps = 86/741 (11%)
Query: 8 QLQYEYKANSNLVLQADVRLIERRSRDEATGEVCSLVGKLEGTRMGDRFMRTKP------ 61
Q QY Y A SNLV QAD R + RR E TGE SLV ++ MG R KP
Sbjct: 27 QSQYSYSAMSNLVTQADRRFVSRRDA-EPTGEPESLVNRVSIADMGSRARIEKPSTLPLE 85
Query: 62 IKAEERKVKRQKRDEAQYDF-----TRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVL 116
+ E ++V+ ++D + R K ++ + + D + Y P T ETR+ Y+ +
Sbjct: 86 LTQEVQEVRLPRKDAESLEIGIRQPEREKRSSAILKYFDSFEILKYNPLTDETREVYDYI 145
Query: 117 LSFIQEALGDQPRDILCGAADEVLTVLKNDRMKEKEKKKETENLLGS-LAEERFALLVNL 175
LSFIQ+ LGDQ +IL AAD ++ +LK+ + E+ +KK+ E +L + L ++RF+ LVNL
Sbjct: 146 LSFIQQYLGDQSPEILRSAADLIIELLKDSSLDEQGRKKQIEEVLSTELPQDRFSQLVNL 205
Query: 176 GKKITDFGAEQKSTTAEENIDDTYGINVQFEESEDEDDEDTFGEVREAEELDDEGEEARV 235
G ++TD+ EQ+ EE ++++ G+ V F E+++E++ E E E +D E +
Sbjct: 206 GNRLTDYTVEQEEELNEEGVNES-GVPVLFNEADEEEEAVEAMEEDEVAEDEDVVLETSI 264
Query: 236 NTAIHAENLAGGEDAEGTGRKKDK-------SLHPLDIDAYWLQRRLSKIYDDAMVSQAK 288
+ +N+ D E T D ++HP +IDA+WLQR ++K + DA+V Q K
Sbjct: 265 SQEEEKKNIEN-PDTEVTFISADTKKVTEIPTVHPREIDAFWLQREIAKYFADAVVCQEK 323
Query: 289 AGEVLNILKSAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASSQSESERQK 348
+ L + D + EN+L+ + Y+ F +++L K R I+ CT+L + ++ ER
Sbjct: 324 TNQAFEALSADYDLGELENELMSIFDYEHFYLVQLLTKNRWTIVSCTMLKRAATDEERLG 383
Query: 349 LRDTMSEDPALAKILRQLDTGK---NEDG--DANDSADARQSTSIRHQMGQGGGDGVAVV 403
+ + + + IL L G +DG + N++ + + ++ +
Sbjct: 384 VEEQIRA-AGRSWILEALRPGAITIPDDGLNELNNNVVEKAEPAPVSEIPLSKTLTSHKI 442
Query: 404 AGTRQVLDLEDLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLV 463
QV DLE+ F+ GS MSNK +LP+GSFR+ KGYEE+HVPA +G DE LV
Sbjct: 443 VPKHQV-DLENYVFTEGSRLMSNKAVKLPEGSFRRTGKGYEEIHVPAPNKAVLGADERLV 501
Query: 464 PIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIG 523
I +LP + AF + ++LNRIQS L A +DEN+LLCAPTGAGKTNVA+LC+L E+
Sbjct: 502 KIKELPEWSHQAFLNTQSLNRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQ 561
Query: 524 KHINADGTINADEFKIIY------------------VAPMRSLVQEMVG----------- 554
KH+ D + N FKI+Y + P V E+ G
Sbjct: 562 KHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQISE 621
Query: 555 ------------------------NFGK----DEIHLLHDERGPVLEALIARTIRNIEAT 586
N + DE+HLLHDERGPVLE+++AR R+ E T
Sbjct: 622 TQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEVHLLHDERGPVLESIVARIFRHQEET 681
Query: 587 QEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQ 646
E VRLVGLSATLPNY DVA+ L + P+ GLFYFD+++RP L+Q++IG+TEK KR Q
Sbjct: 682 LEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPCPLKQEFIGITEKTPFKRMQ 741
Query: 647 VMNDIVYEKVMEHAGRNQLLV 667
N+ YEKVM+HAG+NQ+L+
Sbjct: 742 TTNEACYEKVMQHAGKNQVLI 762
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 138/211 (65%), Gaps = 6/211 (2%)
Query: 1470 LIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVET 1529
L+ ACVD LSS G L + ME++QM+TQA+W +DS LKQ+P+F+ +I+RC ++GV
Sbjct: 1958 LLGACVDTLSSEGHLIACIRPMEMSQMVTQALWDRDSPLKQIPYFDDALIERCNKEGVHD 2017
Query: 1530 VFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVVVNL 1589
VFDI++L+D+ R LL + + LA A F N+YP+I++ +E+ + + + + S ++V L
Sbjct: 2018 VFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVHANSPSVLIVQL 2077
Query: 1590 DRE----DEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIKLDFVAP 1645
RE +EV VIAP++P ++ E WW+VI D KT LL+IK++TL + K++FV P
Sbjct: 2078 TRELEEDEEVDTTVIAPYFPAQKTEHWWLVISDDKT--LLAIKKITLGRSLTTKMEFVPP 2135
Query: 1646 NPGHHSYALYFMSDAYLGCDQEYKFSIDVSE 1676
G Y L SD+Y+G D E +F +V E
Sbjct: 2136 AMGTLKYKLSCFSDSYMGVDYEKEFECNVLE 2166
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 142/589 (24%), Positives = 268/589 (45%), Gaps = 63/589 (10%)
Query: 801 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKD 860
MRS+ + V + DE+ LL GP+ E +I+R ++++R+VGLS ++ N +D
Sbjct: 1480 MRSI--QKVDFYICDELQLLGGFYGPLYEIVISRIRYMAVQLEKNIRVVGLSVSVANARD 1537
Query: 861 VATLLRIKPETGLFYFDNSFRP--VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEH-AG 917
+ L P+ +F F RP + + Q +T +L M+ +Y + +
Sbjct: 1538 LGEWLGTSPQC-IFNFSPKDRPNPLTIHLQSFSITHFPSL--MLAMSKPIYRSLKNFISQ 1594
Query: 918 RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEA-DQVKNGELRD 976
R +VF RK + A + + E ++ EA ++V++ L+
Sbjct: 1595 RKSTIVFTPDRKVAKQLAFDLVTFSMAD--------EDEYLFSLMENEAFNKVEDAALQQ 1646
Query: 977 LLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLF 1036
L +G A +I + S+ D+ +V+ L+
Sbjct: 1647 SLKHGIA---------------------YISEITSSN--------------DQNIVQYLY 1671
Query: 1037 ADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQY 1096
I+VL+++ + + + ++ VI+ GTQ Y+ ++ R+++ ++LQMLG
Sbjct: 1672 RHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIGS 1731
Query: 1097 DTKGEGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLG 1156
+ +L+T ++ +YY LN LP+ES + L D +EI T+++ +DAV WL
Sbjct: 1732 SELSQVILMTVTTKKEYYKKFLNEPLPMESHLQVWLHDAFVSEISTQTIESKQDAVDWLT 1791
Query: 1157 YTYLYIRMLRAPNLYG---ISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGH 1213
++Y+Y R++ P YG I+H+++ E +DL+ T L + LI D +
Sbjct: 1792 WSYMYRRLVANPAYYGLQDITHESVSE------FLSDLVETTMNDLSEARLITVDDEDDS 1845
Query: 1214 MQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQ 1273
L IASHY T+ TM T+ L L + + + E+ + +R+ E + L+
Sbjct: 1846 CVALNLAMIASHYGITYITMQTFALSLSERTKMKGLLEIVTSAAEYEQLPIRKYEDIVLE 1905
Query: 1274 KLMERAPIPIKEST-DEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFE 1332
++ R P+ + ++P K ILL A+ S+ +L L+ D F+ L+ A +
Sbjct: 1906 RIHSRLPVRLSNPNYEDPHTKSFILLAAHFSRFELPP-GLVIDQKFILTRVHNLLGACVD 1964
Query: 1333 IVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKK 1381
+ G + + + +MV + +W SPL+Q + +I++ K+
Sbjct: 1965 TLSSEGHLIACIRPMEMSQMVTQALWDRDSPLKQIPYFDDALIERCNKE 2013
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 68/92 (73%)
Query: 668 STLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFF 727
S +RVEL I+ F WD+ L G SE FWILVEDVD + +LH+E F L +Y D+H+V F
Sbjct: 1234 SLVRVELVINSQFNWDDHLSGTSEAFWILVEDVDGDRLLHYEQFFLLKKYKDDEHIVNFT 1293
Query: 728 VPVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
VP+ EPLPP YF++IVSDRW+ + T +P+SF+
Sbjct: 1294 VPLLEPLPPCYFIKIVSDRWLHSITKVPLSFQ 1325
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 58/220 (26%)
Query: 464 PIDKL--PRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCML-- 519
P+ L P ++ + +FK N+IQ+++ S ++++++ + AP G+GKT A L +L
Sbjct: 1346 PVSSLNNPSFIS-LYPNFKFFNKIQTQVFNSVYKTNDSVFIGAPNGSGKTVCAELALLHH 1404
Query: 520 ---------------QEI---------GKHIN-ADGTI-------NADEFKIIYVA---- 543
QEI GK + DG + + + K+I VA
Sbjct: 1405 WSQEDYGTAVYIAPIQEIVDRRYEEWYGKFSDLGDGKVLVKLTGERSQDLKLIQVADLIF 1464
Query: 544 --------------PMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQED 589
MRS+ + V + DE+ LL GP+ E +I+R +++
Sbjct: 1465 CTPSQWDSLSKRWRSMRSI--QKVDFYICDELQLLGGFYGPLYEIVISRIRYMAVQLEKN 1522
Query: 590 VRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVAL 629
+R+VGLS ++ N +D+ L P+ +F F RP L
Sbjct: 1523 IRVVGLSVSVANARDLGEWLGTSPQC-IFNFSPKDRPNPL 1561
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 29/221 (13%)
Query: 1454 EGFWILVED---VDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQ 1510
+GF LV D V A R+++A ++ GW S A +++ +MI + +W S L+Q
Sbjct: 1111 DGF-ALVADMVYVTQSAGRIMRAIFEISLRRGWSSVATLSLDTCKMIEKRLWPTMSPLRQ 1169
Query: 1511 LPHFNADIIKRCTEKGV--ETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELS 1568
P+ +++I+R +K + FD+ D L L + V +P + +
Sbjct: 1170 FPNCPSEVIRRVEKKEFPWQRYFDL----DPAELGELVGVPKEGRRVYNMVQSFPRLSVE 1225
Query: 1569 YEVLNKDRISSGSSVNVVVN--LDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLS 1626
V R S V +V+N + +D ++G E +W+++ D + LL
Sbjct: 1226 AHVQPITR--SLVRVELVINSQFNWDDHLSG----------TSEAFWILVEDVDGDRLLH 1273
Query: 1627 IKRLTLQQKAKIK---LDFVAP--NPGHHSYALYFMSDAYL 1662
++ L +K K ++F P P Y + +SD +L
Sbjct: 1274 YEQFFLLKKYKDDEHIVNFTVPLLEPLPPCYFIKIVSDRWL 1314
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/655 (57%), Positives = 493/655 (75%), Gaps = 40/655 (6%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
DEIHLLHDERGPVLE ++ART+R IE+TQ+ VRLVGLSATLPNY+DVAT LR++P+ G+F
Sbjct: 687 DEIHLLHDERGPVLECIVARTLRMIESTQQMVRLVGLSATLPNYEDVATFLRVEPD-GVF 745
Query: 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934
YFD+S+RP+ LEQQYIG++++ +K+ Q NDI + KV E G +Q+L+FVHSR+ET KT
Sbjct: 746 YFDSSYRPIPLEQQYIGISDR-GIKQLQRCNDITFTKVSERVGDHQILIFVHSRRETAKT 804
Query: 935 ARAIRDMCLEKDTLGQFLREGSASMEVLR-TEADQVKNGELRDLLPYGFAIHHAGMTRVD 993
+ +RD +E ++ +++R+ AS E+LR T + Q++N EL+DLLPYG IHHAG++R D
Sbjct: 805 GKDLRDRAVEDQSIDRYIRD-PASREILRATASKQIQNAELKDLLPYGIGIHHAGLSRSD 863
Query: 994 RTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWG 1053
R+L VEDLF D IQVL+STATLAWG
Sbjct: 864 RSL-----------------------------------VEDLFGDNRIQVLISTATLAWG 888
Query: 1054 VNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQY 1113
VNLPAHTVIIKGTQIYNPEKG W EL LDV QMLGRAGRP +D +GEG++IT+ ELQ+
Sbjct: 889 VNLPAHTVIIKGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFDKEGEGIIITSQHELQF 947
Query: 1114 YLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGI 1173
YLSLLN QL +ESQ IS++ D LNAEIVLG++Q ++DAV WLGYTYLYI M+R P LY I
Sbjct: 948 YLSLLNTQLSIESQFISRIADNLNAEIVLGSIQTVRDAVNWLGYTYLYICMIRNPPLYEI 1007
Query: 1174 SHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETM 1233
S+D ++DPLLE R DL+H+AA LE++ LIKYDRKSG +Q TELG++ASHYY T+ +M
Sbjct: 1008 SYDDFEKDPLLEQRRLDLVHSAATILEKNSLIKYDRKSGKLQSTELGKVASHYYITNSSM 1067
Query: 1234 ATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAK 1293
+ Y + LKP++S+IEL RVFSLS EF+++ VRE EK EL+KL+ER PIPIKE+ +EPS+K
Sbjct: 1068 SIYQEHLKPSMSDIELLRVFSLSSEFKNVVVREGEKFELEKLLERVPIPIKENIEEPSSK 1127
Query: 1294 VNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMV 1353
+N+LLQ YIS LKL+GFAL+ DM ++ QSA+R+ RA+FEIVL +GWAQLA K L+L KM+
Sbjct: 1128 INVLLQTYISNLKLDGFALVVDMFYIAQSASRITRALFEIVLKKGWAQLAKKILNLAKMI 1187
Query: 1354 DRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYV 1413
D +MW S SPLRQF KI +++ ++E++ P E LY+ ++G I+ P GK + +
Sbjct: 1188 DSKMWSSQSPLRQFHKISPKVLNQLERRGIPIEDLYEYNSQQLGNAIQNPSEGKQLFDLI 1247
Query: 1414 HQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAI 1468
H FPKL+L H+QPI LRVEL+I+PDFQ+DE+ H S G+WI+VEDVD E I
Sbjct: 1248 HNFPKLDLTAHVQPILHGLLRVELSITPDFQYDERYHNNSIGWWIIVEDVDGERI 1302
Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust.
Identities = 275/801 (34%), Positives = 414/801 (51%), Gaps = 142/801 (17%)
Query: 1 MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVCSLVGKLEGTRMGDRFMRTK 60
M++ AR QY YK NSNLV ++ R E GE +L G+L G MGDR +K
Sbjct: 1 MSEELARSKQYGYKENSNLVFYSERN---RSELKEPKGEPETLWGRLRG-EMGDRVNYSK 56
Query: 61 PIKAEER---------------------------KVKRQKRDEAQYDFTRMKGATLLSEG 93
P++ E+ KVK Q E + + G +
Sbjct: 57 PLELLEKMQNLKRKTIEKEGGDVNSSNDTYSTTKKVKNQNPLEKKSTNRKSNGNNNNEKP 116
Query: 94 VDEMVGI-----IYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEVLTVLKNDRM 148
+D + +Y+PKT+ETR TYE LL+FIQ +GDQP +++ GA DE+L++LK+D +
Sbjct: 117 IDILSATESFQGLYKPKTKETRITYETLLTFIQRYVGDQPTEVVKGALDEILSILKDDTI 176
Query: 149 KEKEKKKETENLLGSLAEERFALLVNLGKKITDFGAEQ--------KSTTAEENIDDTYG 200
+ EKK E LL L + FA L LGK+ITDF + + + +++DD G
Sbjct: 177 RAPEKKIEISKLLKGLNDVSFAELTQLGKQITDFKDSELAKQQQQQQQQQSMDSLDDEQG 236
Query: 201 INVQFEESEDEDDEDTFGEVREAEELD---------------DEGEEARVNTAIHAENL- 244
+ V +E E+E++ F E+R+ ++ D E +++ + T N
Sbjct: 237 VAVIIDEEEEEENLSDF-EIRDDDDDDDDVDNNEVDDNNNNDSEAQDSEIQTKDENNNDD 295
Query: 245 ---------------AGGEDAEGTGRKKD---KSLHPLDIDAYWLQRRLSKIYDDAMVSQ 286
+ D + T K+ K + P +ID++W+QR++S+ D +S+
Sbjct: 296 DENQKIKENNNNNNKSQKPDTKNTKDDKNNNSKLISPNEIDSFWIQRKISEFERDHDLSK 355
Query: 287 AKAGEVLNILKSAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASSQSESER 346
A + LNIL+ + R E QLV L D DF+K++ +Q ILYCTLLA ++++ ER
Sbjct: 356 QLAEKTLNILRQP-NVRRCEQQLVDLFTIDKLDFLKLIINNKQTILYCTLLAKAENDQER 414
Query: 347 QKLRDTMSEDPALAKILRQLDTGKNEDGDANDSADARQSTSIRHQMGQGGGDGVAVVAGT 406
+K+ D MS +P IL +L + + + +S +M Q +
Sbjct: 415 KKIEDEMSSNPVTLSILNRLKGNEVTAATTEKTIEKTESNKKDVEMKQQQQQQQDEIKKP 474
Query: 407 RQVLDLEDLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPID 466
+++L+LE+L F GSH M+NK + P GS R+Q KG+EE+HVPA P P+E L+ I+
Sbjct: 475 KKLLNLEELSFQQGSHLMTNKEFKFPKGSKREQYKGFEEIHVPARANPPFNPNERLISIE 534
Query: 467 KLPRYVQHAFED--FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLC------- 517
+LP + + FE+ K+LNR+QS+L A ++D NLLL APT +GKTNVA+L
Sbjct: 535 ELPEWSRLPFEESGVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGK 594
Query: 518 ----------------------------MLQEIGKHINADGTI-------------NADE 536
M+ K + + G + E
Sbjct: 595 NRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFSKRLKSYGIVVNELTGDQSLTNKQISE 654
Query: 537 FKIIYVAPMR----------SLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEAT 586
+II P + ++V DEIHLLHDERGPVLE ++ART+R IE+T
Sbjct: 655 TQIIVTTPEKWDIITRKSGDRAYTQLVKLIIIDEIHLLHDERGPVLECIVARTLRMIEST 714
Query: 587 QEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQ 646
Q+ VRLVGLSATLPNY+DVAT LR++P+ G+FYFD+S+RP+ LEQQYIG+++ + +K+ Q
Sbjct: 715 QQMVRLVGLSATLPNYEDVATFLRVEPD-GVFYFDSSYRPIPLEQQYIGISD-RGIKQLQ 772
Query: 647 VMNDIVYEKVMEHAGRNQLLV 667
NDI + KV E G +Q+L+
Sbjct: 773 RCNDITFTKVSERVGDHQILI 793
Score = 223 bits (569), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 184/653 (28%), Positives = 312/653 (47%), Gaps = 67/653 (10%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
DE+HL+ E GP +E +++R T +R++ LS+++ N +D+ + P+T +
Sbjct: 1526 DELHLIGGEYGPTMEIVVSRMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQT-CY 1584
Query: 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGK- 933
F + RP+ +E Q G R M +V ++ + Q +VFV +RK +
Sbjct: 1585 NFHPNVRPIPVEYQIQGFEFPHFNARMLAMTKPTVYEVAKNKNQ-QSIVFVPTRKLSRSL 1643
Query: 934 TARAIRDMCLEKDTLGQ-FLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRV 992
A I ++ +DTL + +L VL + V + L+ L G A +H G+T
Sbjct: 1644 AADIIANVSSFEDTLTKPYL---VCEEHVLTPYLEDVDSFALKQSLQMGVAFYHDGLTER 1700
Query: 993 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAW 1052
+R +VE LF I+VL++T ++AW L++++F
Sbjct: 1701 ERRVVEILFRSGSIRVLIATHSVAW-------------LLDNVF---------------- 1731
Query: 1053 GVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ----YDTKGEGVLITNH 1108
A V+I GTQ+Y + R+++ D+LQM+GRAG+ + K VL+ H
Sbjct: 1732 -----AQLVVIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQEGGGVISNKVAKVLLLCH 1786
Query: 1109 S-ELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRA 1167
+ + +YY LN LPVES + L D N+EIV T+ +DA+ +L +T+LY R+ +
Sbjct: 1787 APKKEYYKMFLNEPLPVESHLDHCLHDQFNSEIVTKTITKKQDALDYLTWTFLYRRLNQN 1846
Query: 1168 PNLY---GISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIAS 1224
PN Y G+SH L E H ++L+ + LE+S I + LG IAS
Sbjct: 1847 PNYYNLSGVSHLHLSE------HLSELVENTLVELEQSNCITIQDDQDKVSPLNLGIIAS 1900
Query: 1225 HYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPI- 1283
+YY ++T+ + LK T + + S + EF + +R E L KL P I
Sbjct: 1901 YYYLKYQTIELFGSSLKSTTRRRGIMDIISNAPEFNSLPIRHREDQILMKLASHLPQKID 1960
Query: 1284 KESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLA 1343
K + E S KVN+LLQ + S+ + L D F+ ++A RL++AI +++ W Q A
Sbjct: 1961 KPNYQEISTKVNVLLQCHFSRESISA-DLYQDQKFILENATRLLQAIVDVISSNSWLQPA 2019
Query: 1344 DKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVP 1403
A+ L +M+ + MW S S +Q + + I I + E ++DL + I++
Sbjct: 2020 IAAMELSQMITQAMWDSDSVFKQLPHMNKRRIDAITSQGI--ESVFDLMSLDDNSRIQLL 2077
Query: 1404 KLGKT----IHKYVHQFPKLELATHIQP----ITRSTLRVELTISPDFQWDEK 1448
L + + + ++P ++++ +Q S + VE+ I D DE+
Sbjct: 2078 DLSQQESNDLVQSFMKYPDIDISYQVQDEDDLHADSIMTVEMVIERDLGDDEE 2130
Score = 214 bits (544), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 148/219 (67%), Gaps = 11/219 (5%)
Query: 1467 AIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKG 1526
A RL+QA VDV+SSN WL PA+AAME++QMITQAMW DS KQLPH N I T +G
Sbjct: 1999 ATRLLQAIVDVISSNSWLQPAIAAMELSQMITQAMWDSDSVFKQLPHMNKRRIDAITSQG 2058
Query: 1527 VETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGS--SVN 1584
+E+VFD+M L+D+ R++LL LS+ + D+ + +YP+I++SY+V ++D + + S +V
Sbjct: 2059 IESVFDLMSLDDNSRIQLLDLSQQESNDLVQSFMKYPDIDISYQVQDEDDLHADSIMTVE 2118
Query: 1585 VVVNLDREDEVTGP---------VIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQK 1635
+V+ D D+ P V AP+YP+++ GWW +IGD K N LL+IKR+T +K
Sbjct: 2119 MVIERDLGDDEENPIEINDSINVVSAPYYPKEKICGWWALIGDSKNNHLLAIKRITFLKK 2178
Query: 1636 AKIKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFSIDV 1674
K+K +F P G H +LY SD+Y GCDQE++ +I++
Sbjct: 2179 TKVKFEFPTPAVGKHQLSLYLFSDSYNGCDQEHELNINI 2217
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 73/96 (76%), Gaps = 1/96 (1%)
Query: 665 LLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYAT-DDHV 723
+L LRVEL+I+PDFQ+DE+ H S G+WI+VEDVD E +L+ EYF LK + +D +
Sbjct: 1262 ILHGLLRVELSITPDFQYDERYHNNSIGWWIIVEDVDGERILYFEYFSLKKKMVNGEDQL 1321
Query: 724 VKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
V F VP+ +PLPPQY++R++SD WIGAE LP+SF+
Sbjct: 1322 VSFTVPLSQPLPPQYYVRVISDHWIGAEYSLPISFQ 1357
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINAD-GTINADEFKIIYVAPMRSLVQEMVGNFGK 814
P +GKTNVA+L +L EIGK+ + D G I D FKI+Y+APM+SLVQEMVGNF K
Sbjct: 575 PTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFSK 629
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 559 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 618
DE+HL+ E GP +E +++R T +R++ LS+++ N +D+ + P+T +
Sbjct: 1526 DELHLIGGEYGPTMEIVVSRMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQT-CY 1584
Query: 619 YFDNSFRPVALEQQYIGVTEKKALKRFQVMND-IVYEKVMEHAGRNQLLVSTLRVELTIS 677
F + RP+ +E Q G R M VYE ++ + V T ++ +++
Sbjct: 1585 NFHPNVRPIPVEYQIQGFEFPHFNARMLAMTKPTVYEVAKNKNQQSIVFVPTRKLSRSLA 1644
Query: 678 PDF 680
D
Sbjct: 1645 ADI 1647
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 96/230 (41%), Gaps = 28/230 (12%)
Query: 1454 EGFWILVE--DVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQL 1511
+GF ++V+ + A R+ +A +++ GW A + +A+MI MWS S L+Q
Sbjct: 1142 DGFALVVDMFYIAQSASRITRALFEIVLKKGWAQLAKKILNLAKMIDSKMWSSQSPLRQF 1201
Query: 1512 PHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEV 1571
+ ++ + +G+ + D+ E +Q + S+ + + +P ++L+ V
Sbjct: 1202 HKISPKVLNQLERRGI-PIEDLYEYNSQQLGNAIQ-NPSEGKQLFDLIHNFPKLDLTAHV 1259
Query: 1572 LNKDRISSG---SSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIK 1628
I G +++ + ++ I GWW+++ D +L +
Sbjct: 1260 ---QPILHGLLRVELSITPDFQYDERYHNNSI----------GWWIIVEDVDGERILYFE 1306
Query: 1629 RLTLQQKAKIKLD----FVAP--NPGHHSYALYFMSDAYLGCDQEYKFSI 1672
+L++K D F P P Y + +SD ++G EY I
Sbjct: 1307 YFSLKKKMVNGEDQLVSFTVPLSQPLPPQYYVRVISDHWIGA--EYSLPI 1354
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 479 FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFK 538
F N IQ+++ +S++N + APT +GKT A + +++ ++ A K
Sbjct: 1395 FSIFNAIQTQVFNCMYQSNDNAFISAPTNSGKTVCAEIALIRCFKQNPKA---------K 1445
Query: 539 IIYVAPMRSL 548
++Y+APM+ L
Sbjct: 1446 VVYLAPMQDL 1455
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/768 (44%), Positives = 469/768 (61%), Gaps = 98/768 (12%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGT-INADEFKIIYVAPMRSLVQEMVGNFGK----- 814
P G+GKTN+ALL +L+ + H N +N FKI+Y+AP+++LVQE V F +
Sbjct: 522 PTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALVQEQVREFQRRLAFL 581
Query: 815 ------------------DEIHLL----------------------------------HD 822
DE +L HD
Sbjct: 582 GIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTRNSNNLAIVELVRLLIIDEIHLLHD 641
Query: 823 ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRP 882
+RGPVLE+++ART + QE R++GLSATLPNY+DV LR+ P+ GLFYFD+SFRP
Sbjct: 642 DRGPVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLRV-PKEGLFYFDSSFRP 700
Query: 883 VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGR-NQLLVFVHSRKETGKTARAIRDM 941
L QQ+ G+ E+ +LK+ + MND YEKV+E NQ++VFVHSRKET +TA +++
Sbjct: 701 CPLSQQFCGIKERNSLKKLKAMNDACYEKVLESINEGNQIIVFVHSRKETSRTATWLKNK 760
Query: 942 CLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLF 1001
E++ + + + S ++L+TEA V + LR L+ G HHAG+TR DR+L EDLF
Sbjct: 761 FAEENITHKLTKNDAGSKQILKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSLSEDLF 820
Query: 1002 ADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTV 1061
AD +QVLV TATLAWGVNLPAH TV
Sbjct: 821 ADGLLQVLVCTATLAWGVNLPAH-----------------------------------TV 845
Query: 1062 IIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQ 1121
IIKGT +Y+PEKG W +L DVLQMLGRAGRP+YDT GEG++IT+ S +QYYLS+LN Q
Sbjct: 846 IIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVLNQQ 905
Query: 1122 LPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKED 1181
LP+ESQ +SKL D LNAE+V G ++ DAV WL YTYLY+RML +P LY + + D
Sbjct: 906 LPIESQFVSKLVDNLNAEVVAGNIKCRNDAVNWLAYTYLYVRMLASPMLYKVPD--ISSD 963
Query: 1182 PLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLK 1241
L+ R L+H+A L+ L+ YD ++ ++ T+LG IAS +Y H +M YN+ L
Sbjct: 964 GQLKKFRESLVHSALCILKEQELVLYDAENDVIEATDLGNIASSFYINHASMDVYNRELD 1023
Query: 1242 PTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKVNILLQAY 1301
++I+LFR+FS+S EF++++VR EEK EL++L+E+APIPI+E D+P AKVN+LLQ+Y
Sbjct: 1024 EHTTQIDLFRIFSMSEEFKYVSVRYEEKRELKQLLEKAPIPIREDIDDPLAKVNVLLQSY 1083
Query: 1302 ISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSM 1361
SQLK EGFAL SD+VF+ Q+A RL+RA+FEI L RGW L+LCK +MW +
Sbjct: 1084 FSQLKFEGFALNSDIVFIHQNAGRLLRAMFEICLKRGWGHPTRMLLNLCKSATTKMWPTN 1143
Query: 1362 SPLRQFRKIPEEIIKKIEKKNFPWERLYDL-GPNEIGELIRVPKLGKTIHKYVHQFPKLE 1420
PLRQF+ P E+IK++E PW L P E+G IR K GK ++ + +FPK+
Sbjct: 1144 CPLRQFKTCPVEVIKRLEASTVPWGDYLQLETPAEVGRAIRSEKYGKQVYDLLKRFPKMS 1203
Query: 1421 LATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAI 1468
+ + QPITRS +R + I D+ WD +HG E F +++ED D ++I
Sbjct: 1204 VTCNAQPITRSVMRFNIEIIADWIWDMNVHGSLEPFLLMLEDTDGDSI 1251
Score = 268 bits (684), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 230/776 (29%), Positives = 353/776 (45%), Gaps = 169/776 (21%)
Query: 11 YEYKANSNLVLQADVRLI---ERRSRDEATGEVCSLVGKLEGTRMGDRFMRTKPIKAEER 67
Y Y SN VL+ D R + + RD + S+ G++ MG +E
Sbjct: 17 YRYDEMSNKVLKVDKRFMNTSQNPQRDAEISQPKSMSGRISAKDMGQGLCNNINKGLKEN 76
Query: 68 KVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFIQEALG-D 126
V +K ++ + T+L+ D + Y PK +TYE +L ++ E LG D
Sbjct: 77 DVAVEKTGKSASLKKIQQHNTILNSSSD--FRLHYYPKDPSNVETYEQILQWVTEVLGND 134
Query: 127 QPRDILCGAADEVLTVLKNDRMKE----KEKKKETENLLG-SLAEERFALLVNLGKKITD 181
P D++ G AD + LK + E +E+K++ ++ LG ++ +F LV L K ITD
Sbjct: 135 IPHDLIIGTADIFIRQLKENEENEDGNIEERKEKIQHELGINIDSLKFNELVKLMKNITD 194
Query: 182 FGAEQKSTTAEENIDDTYGINVQFEESEDEDDEDTFGEVREAEELDDEGEEARVNTAIHA 241
+ E D ++ + + E+ D+E N A
Sbjct: 195 Y-----------------------ETHPDNSNKQAVAILADDEKSDEEEVTEMSNNA--- 228
Query: 242 ENLAGGE--------------DAEGTGRKKDKSLHP----------------------LD 265
N+ GGE D E +KK+K P
Sbjct: 229 -NVLGGEINDNEDDDEEYDYNDVEVNSKKKNKRALPNIENDIIKLSDSKTSNIESVPIYS 287
Query: 266 IDAYWLQRRL-SKI-YDDAMVSQAKAGEVLNILKSAGDDRDA-ENQLVLLLGYDCFDFIK 322
ID ++LQR+L S++ Y D V Q + ++LN +++ + A E +LV LL ++ +
Sbjct: 288 IDEFFLQRKLRSELGYKDTSVIQDLSEKILNDIETLEHNPVALEQKLVDLLKFENISLAE 347
Query: 323 MLKKYRQMILYCTLLASSQSESERQKLRDTMSEDPALAKILRQLDTGKNEDGDANDSADA 382
+ K R I + LA S T +E P L I + + G N D +
Sbjct: 348 FILKNRSTIFWGIRLAKS-----------TENEIPNL--IEKMVAKGLN---DLVEQYKF 391
Query: 383 RQSTSIRHQMGQGGGDGVAVVAGTRQ--------VLDLEDLQFSSGSHFMSNKRCELPDG 434
R++T + ++ G + A + V+DLE ++F S M+ + LP+G
Sbjct: 392 RETTHSKRELDSGDDQPQSSEAKRTKFSNPAIPPVIDLEKIKFDESSKLMTVTKVSLPEG 451
Query: 435 SFRKQRKGYEEVHVPALKPKPMGP--DETLVPIDKLPRYVQHAFEDFKT--LNRIQSRLC 490
SF++ + Y+E+H+PA P P D L I LP + Q AF +T LN IQS++
Sbjct: 452 SFKRVKPQYDEIHIPA----PSKPVIDYELKEITSLPDWCQEAFPSSETTSLNPIQSKVF 507
Query: 491 KSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADG-TINADEFKIIYVAPMRSLV 549
+A E D N+L+CAPTG+GKTN+ALL +L+ + H N +N FKI+Y+AP+++LV
Sbjct: 508 HAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIAPLKALV 567
Query: 550 QEMVGNFGK-----------------------DEIHLL---------------------- 564
QE V F + DE +L
Sbjct: 568 QEQVREFQRRLAFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTRNSNNLAIVEL 627
Query: 565 ------------HDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIK 612
HD+RGPVLE+++ART + QE R++GLSATLPNY+DV LR+
Sbjct: 628 VRLLIIDEIHLLHDDRGPVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLRV- 686
Query: 613 PETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGR-NQLLV 667
P+ GLFYFD+SFRP L QQ+ G+ E+ +LK+ + MND YEKV+E NQ++V
Sbjct: 687 PKEGLFYFDSSFRPCPLSQQFCGIKERNSLKKLKAMNDACYEKVLESINEGNQIIV 742
Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 149/243 (61%), Gaps = 18/243 (7%)
Query: 1434 RVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEV 1493
R+EL + DFQ D ++D+ + + LI VD+LS+NG+L+ A AM++
Sbjct: 1936 RLELPV--DFQND-------------LKDILEKVVPLINVVVDILSANGYLN-ATTAMDL 1979
Query: 1494 AQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLA 1553
AQM+ Q +W D+ L+Q+PHFN I+++C E VETV+DIM LED++R +L L++SQLA
Sbjct: 1980 AQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLA 2039
Query: 1554 DVARFCNRYPNIELSYEVLNKDRISSGSSVNVVVNLDREDEVTG-PVIAPFYPQKREEGW 1612
VA F N YPN+EL+Y + N D + SG + + L R+ E V + YP + E W
Sbjct: 2040 QVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRDVEPENLQVTSEKYPFDKLESW 2099
Query: 1613 WVVIGDPKTNSLLSIKRLTLQQKA-KIKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFS 1671
W+V+G+ L +IK++TL ++ + +L+F P G H+ ++ + D+YL D+E F
Sbjct: 2100 WLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPTSGKHNLTIWCVCDSYLDADKELSFE 2159
Query: 1672 IDV 1674
I+V
Sbjct: 2160 INV 2162
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 151/620 (24%), Positives = 269/620 (43%), Gaps = 72/620 (11%)
Query: 825 GPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFR--P 882
G V E LI+R I ++ +R V LS L N +D + ++ ++ F S R P
Sbjct: 1485 GAVYETLISRMIFIATQLEKKIRFVCLSNCLANARDFGEWAGMT-KSNIYNFSPSERIEP 1543
Query: 883 VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDM- 941
+ + Q E + F ++ RN VF+ SRK+ + A A
Sbjct: 1544 LEINIQSFKDVEHISF-NFSMLQMAFEASAAAAGNRNSSSVFLPSRKDCMEVASAFMKFS 1602
Query: 942 -CLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDL 1000
+E D L + E + +++ +G LR L +G I + GM D +V+ L
Sbjct: 1603 KAIEWDML-------NVEEEQIVPYIEKLTDGHLRAPLKHGVGILYKGMASNDERIVKRL 1655
Query: 1001 FADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHT 1060
+ + VL L+S A+
Sbjct: 1656 YEYGAVSVL----------------------------------LISKDCSAFACK--TDE 1679
Query: 1061 VIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNH 1120
VII GT +Y+ + +++ ++L+M+G A G+ +++T+H+ YY L
Sbjct: 1680 VIILGTNLYDGAEHKYMPYTINELLEMVGLASGND-SMAGKVLILTSHNMKAYYKKFLIE 1738
Query: 1121 QLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHD---- 1176
LP ES + + D LN EI +Q+ +D V W Y+Y Y R+ P+ YG+
Sbjct: 1739 PLPTESYLQYIIHDTLNNEIANSIIQSKQDCVDWFTYSYFYRRIHVNPSYYGVRDTSPHG 1798
Query: 1177 -ALKEDPLLECHRADLIHTAALHLERS-GLIKYDRKSGHMQVTEL------GRIASHYYC 1228
++ L+E DL+ ++ + ++ + + + G + TE+ G IASHY
Sbjct: 1799 ISVFLSNLVETCLNDLVESSFIEIDDTEAEVTAEVNGGDDEATEIISTLSNGLIASHYGV 1858
Query: 1229 THETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTD 1288
+ T+ ++ L T + + V S + EF + +R+ ++ L KL +R P+ E T
Sbjct: 1859 SFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTS 1918
Query: 1289 EPSA--KVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKA 1346
S KV +LLQAY S+L+L +D+ + + L+ + +I+ G+ A A
Sbjct: 1919 SGSVSFKVFLLLQAYFSRLELP-VDFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTA 1976
Query: 1347 LSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLG 1406
+ L +M+ + +W +PLRQ +I++K ++ N E +YD+ E E + L
Sbjct: 1977 MDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINV--ETVYDIMALEDEERDEILTLT 2034
Query: 1407 KT----IHKYVHQFPKLELA 1422
+ + +V+ +P +EL
Sbjct: 2035 DSQLAQVAAFVNNYPNVELT 2054
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 668 STLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFF 727
S +R + I D+ WD +HG E F +++ED D + +L+++ + + + F
Sbjct: 1214 SVMRFNIEIIADWIWDMNVHGSLEPFLLMLEDTDGDSILYYDVLFITPDIVGHEFTLSFT 1273
Query: 728 VPVFE----PLPPQYFLRIVSDRWIGAETILPVS---FRLPR 762
+ + LPP +FL ++S+ W +E +PVS F+LP+
Sbjct: 1274 YELKQHNQNNLPPNFFLTLISENWWHSEFEIPVSFNGFKLPK 1315
Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCML----QEIGK--HINADG 530
+FKT N+IQS++ +S S++++ + + G GKT +A L +L Q G+ +IN G
Sbjct: 1344 EFKTFNKIQSQVFESLYNSNDSVFVGSGKGTGKTAMAELALLNHWRQNKGRAVYINPSG 1402
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Query: 1463 VDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRC 1522
+ A RL++A ++ GW P + + + T MW + L+Q ++IKR
Sbjct: 1101 IHQNAGRLLRAMFEICLKRGWGHPTRMLLNLCKSATTKMWPTNCPLRQFKTCPVEVIKRL 1160
Query: 1523 TEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELS 1568
E D ++LE + SE V R+P + ++
Sbjct: 1161 -EASTVPWGDYLQLETPAEVGRAIRSEKYGKQVYDLLKRFPKMSVT 1205
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 615 bits (1586), Expect = e-175, Method: Compositional matrix adjust.
Identities = 320/770 (41%), Positives = 468/770 (60%), Gaps = 99/770 (12%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL---------------- 804
P GAGKTN+A+L +L EI +H+ G I DEFKI+YVAPM++L
Sbjct: 509 PTGAGKTNIAMLTVLHEIRQHVQ-HGVIKKDEFKIVYVAPMKALAAEMTNYFSKRLEPLG 567
Query: 805 --VQEMVGNF----GK------------------------------------DEIHLLHD 822
V+E+ G+ G+ DE+HLLH+
Sbjct: 568 ITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQLVKLLILDEVHLLHE 627
Query: 823 ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRP 882
+RGPVLE+++ART+R +E+TQ +R++GLSATLPNY DVAT L + P GLFYFD+ FRP
Sbjct: 628 DRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDSRFRP 687
Query: 883 VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEH--AGRNQLLVFVHSRKETGKTARAIRD 940
V L Q +IG+ +++ M+++ YE V++ AG +Q++VFVH+R T +TA A+R+
Sbjct: 688 VPLGQTFIGIKTTNKVQQLNHMDEVCYENVLKQIMAG-HQVMVFVHARNATVRTAMALRE 746
Query: 941 MCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDL 1000
+ FL + + + +N +LR+L P GF+IHHAGM R DR+L
Sbjct: 747 KAKNNGHICHFLSPQGSDYGQAEKQVQRSRNKQLRELFPDGFSIHHAGMLRQDRSL---- 802
Query: 1001 FADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHT 1060
VE+LF++ HI+VLV TATLAWGVNLPAH
Sbjct: 803 -------------------------------VENLFSNGHIKVLVCTATLAWGVNLPAHA 831
Query: 1061 VIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNH 1120
V+IKGTQIY ++G +V+LG LDV+Q+ GRAGRPQ+D GEG++IT H +L +YL+LL
Sbjct: 832 VVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQ 891
Query: 1121 QLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKE 1180
Q P+ESQ + L D LNAEI LGTV N+++AV W+ YTYLY+RM P +YGISH A +
Sbjct: 892 QNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQM 951
Query: 1181 DPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLL 1240
DP LE HR L+ L+++ +I+++ ++G T+LGR ASHYY + T+ T+N+L
Sbjct: 952 DPGLEKHREQLVIEVGRKLDKARMIRFEERTGFFSSTDLGRTASHYYIKYNTIETFNELF 1011
Query: 1241 KPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLM-ERAPIPIKESTDEPSAKVNILLQ 1299
+E ++ + S + EF I VREEE EL L+ + +P + K+NILLQ
Sbjct: 1012 DAHKTEGDILAIVSKAEEFEQIKVREEEIEELDTLLNDFCELPAPGGVENNYGKINILLQ 1071
Query: 1300 AYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQ 1359
YIS+ +L+ F+L+SD +V Q+AAR++RA+FEI L + W + + L+L K++D+R+W
Sbjct: 1072 TYISRGELDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWG 1131
Query: 1360 SMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKL 1419
+SPLRQF +P ++ K+E+KN +++ D+ +EIG ++ K+G + + VHQ P +
Sbjct: 1132 WVSPLRQFSVLPPSVLSKLEEKNLTVDKMKDMRKDEIGHMLHHVKIGLKVKQCVHQIPSI 1191
Query: 1420 ELATHIQPITRSTLRVELTISPDFQWDEKLHGG-SEGFWILVEDVDSEAI 1468
+ IQPITR+ LRV L I+PDF W++++HG E +WI VED ++ I
Sbjct: 1192 AMEATIQPITRTVLRVRLNITPDFTWNDQVHGTVGEPWWIWVEDPTNDHI 1241
Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 187/562 (33%), Positives = 287/562 (51%), Gaps = 52/562 (9%)
Query: 802 RSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDV 861
RS VQ+ V DEIHLL DERGPVLE +++RT T++ VR+VGLS L N +D+
Sbjct: 1450 RSYVQK-VSILIIDEIHLLGDERGPVLEVIVSRTNFISSHTEKPVRVVGLSTALANARDL 1508
Query: 862 ATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQL 921
A L I + GLF F S RPV LE G + R MN ++ + H+ +
Sbjct: 1509 ADWLNIN-QMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMARMNKPAFQAIRSHSPAKPV 1567
Query: 922 LVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASM-EVLRTEADQVKNGELRDLLPY 980
L+FV SR++T T+ + +D Q+L+ M +++ T V++ L+ L +
Sbjct: 1568 LIFVSSRRQTRLTSLDLIAFLATEDDPKQWLKMDEREMNDIIGT----VRDSNLKLTLAF 1623
Query: 981 GFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRH 1040
G +HHAG+ DR V E+LF +
Sbjct: 1624 GIGMHHAGLHERDRKTV-----------------------------------EELFVNCK 1648
Query: 1041 IQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100
IQVL++T+TLAWGVN PAH VI+KGT+ Y+ + R+V+ DVLQM+GRAGRPQ+D +G
Sbjct: 1649 IQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQG 1708
Query: 1101 EGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYL 1160
+ V++ + + +Y L PVES ++ L D LNAEI GT+ + +DA+ ++ +TY
Sbjct: 1709 KAVILVHDIKKDFYKKFLYEPFPVESSLLDVLADHLNAEIAAGTITSKQDAMDYITWTYF 1768
Query: 1161 YIRMLRAP---NLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVT 1217
+ R++ P NL +SHD + + + + L+ + LE S I+ + ++
Sbjct: 1769 FRRLIMNPTYYNLDNVSHDTMNK------YLSSLVEKSLFDLECSYCIEIGEDNRTIEPL 1822
Query: 1218 ELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLME 1277
GRIAS+YY H T+ + LKP S EL + + + E+ + VR E +L +
Sbjct: 1823 TYGRIASYYYLKHPTIGMFKDQLKPESSVEELLLILTNADEYTDLPVRHNEDQMNSELAK 1882
Query: 1278 RAPIPIK-ESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLY 1336
PI + S D K ++LLQA+ S L +D V A R+ +A+ ++ +
Sbjct: 1883 HLPIEVNPHSFDSSHTKTHLLLQAHFSHAILPCPDYATDTKTVLDQAIRICQAMLDVTAH 1942
Query: 1337 RGWAQLADKALSLCKMVDRRMW 1358
GW A +L +MV + W
Sbjct: 1943 HGWLVAALNITNLVQMVVQGRW 1964
Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/461 (31%), Positives = 229/461 (49%), Gaps = 100/461 (21%)
Query: 295 ILKSAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASS-------------- 340
+L S + +N+L LLG + F+ I+ L + R +I+ +L +
Sbjct: 262 MLASPKSGDELQNELFELLGPEGFELIEKLLQNRSVIVERSLTCQNDNKFQTLQEQCKKF 321
Query: 341 ---------------QSESERQKLRDTMSEDPALAKILRQLDTGKNEDGDANDSADARQS 385
QSE E+ ++ E+ A+ +Q G+ D ++
Sbjct: 322 IGENAKPNYGCQVTIQSEQEKLLMKQYRREEKRNARREKQAGEDGEVSGEGLLCFDPKE- 380
Query: 386 TSIRHQMGQGGGDGVAVVAGTRQVLDLEDLQFS----------SGSHFMSNKRCELPDGS 435
++ ++ V ++ R+V DLE + + S F+ + LP+
Sbjct: 381 LRLQRELALLNARSVPILGRQREV-DLERIHYPHVYDSRAEAMKTSAFIGGAKVFLPESV 439
Query: 436 FRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALE 495
R+ K YEEV +P +P P+G +E +V I L Q AF+ K LNRIQS + ++A
Sbjct: 440 QRENNKMYEEVKIPHSEPMPIGIEEKIVYIKDLDEIGQLAFKGMKRLNRIQSIVFETAYN 499
Query: 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL------- 548
++EN+L+CAPTGAGKTN+A+L +L EI +H+ G I DEFKI+YVAPM++L
Sbjct: 500 TNENMLICAPTGAGKTNIAMLTVLHEIRQHVQ-HGVIKKDEFKIVYVAPMKALAAEMTNY 558
Query: 549 -----------VQEMVGNF----GK----------------------------------- 558
V+E+ G+ G+
Sbjct: 559 FSKRLEPLGITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQLVKLLI 618
Query: 559 -DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 617
DE+HLLH++RGPVLE+++ART+R +E+TQ +R++GLSATLPNY DVAT L + P GL
Sbjct: 619 LDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGL 678
Query: 618 FYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVME 658
FYFD+ FRPV L Q +IG+ +++ M+++ YE V++
Sbjct: 679 FYFDSRFRPVPLGQTFIGIKTTNKVQQLNHMDEVCYENVLK 719
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 66/95 (69%), Gaps = 3/95 (3%)
Query: 668 STLRVELTISPDFQWDEKLHGG-SEGFWILVEDVDSEVVLHHEYFLLKSR--YATDDHVV 724
+ LRV L I+PDF W++++HG E +WI VED ++ + H EYF+++ + + ++
Sbjct: 1203 TVLRVRLNITPDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFIIQKKQVITKEPQLL 1262
Query: 725 KFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
F +P+FEPLP QY++R VSDRW+GAE + ++F+
Sbjct: 1263 VFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQ 1297
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 107/255 (41%), Gaps = 52/255 (20%)
Query: 463 VPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEI 522
+P+ L F N IQ+++ + +D N+LL APTG+GKT A L + +
Sbjct: 1317 LPVTALGHPEYEVLYKFTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVF 1376
Query: 523 GKH----------------------------------INADGTINAD-----EFKIIYVA 543
K+ + G + D + +I
Sbjct: 1377 NKYPTSKAVYIAPLKALVRERIEDWKVRIEEKLGKKVVELTGDVTPDMRAIAQADLIVTT 1436
Query: 544 P-----------MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRL 592
P RS VQ+ V DEIHLL DERGPVLE +++RT T++ VR+
Sbjct: 1437 PEKWDGVSRSWQNRSYVQK-VSILIIDEIHLLGDERGPVLEVIVSRTNFISSHTEKPVRV 1495
Query: 593 VGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIV 652
VGLS L N +D+A L I + GLF F S RPV LE G + R MN
Sbjct: 1496 VGLSTALANARDLADWLNIN-QMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMARMNKPA 1554
Query: 653 YEKVMEHAGRNQLLV 667
++ + H+ +L+
Sbjct: 1555 FQAIRSHSPAKPVLI 1569
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 140/326 (42%), Gaps = 67/326 (20%)
Query: 1414 HQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQA 1473
H F TH+ + ++ + PD+ D K V +AIR+ QA
Sbjct: 1891 HSFDSSHTKTHL--LLQAHFSHAILPCPDYATDTK-------------TVLDQAIRICQA 1935
Query: 1474 CVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADII---------KRCTE 1524
+DV + +GWL A+ + QM+ Q W DS L +P+ + KR +
Sbjct: 1936 MLDVTAHHGWLVAALNITNLVQMVVQGRWIHDSSLLTVPNIEVQHLYLFQKWSQQKRKSV 1995
Query: 1525 KG-----VETVFDIMELED--DDRLRLLQLSESQLADVAR---FCNRYP--NIELSYEVL 1572
G +E + ++M + +D + SE Q A +++ F +R P N+ LS +
Sbjct: 1996 HGGYQGPIECLPELMAACEGKEDVFASIVDSELQTAHISQAWNFLSRLPILNVSLSIKGC 2055
Query: 1573 NKDRISSGSSVNVV------------------------VNLDR-----EDEVTGPVIAPF 1603
D + V V ++L R + + +AP
Sbjct: 2056 WDDPAQPQNEVPVPCLTADTRDNKRWIKLHADQEYVLQIHLQRTQMGYQGKQDSKAVAPR 2115
Query: 1604 YPQKREEGWWVVIGDPKTNSLLSIKRL-TLQQKAKIKLDFVAP-NPGHHSYALYFMSDAY 1661
+P+ ++EGW++++G+ L+++KR ++ + + + F P PG Y LY MSD+Y
Sbjct: 2116 FPKVKDEGWFLILGEVDKKELIALKRTGYVRNRNTVSVAFYTPETPGKCIYTLYLMSDSY 2175
Query: 1662 LGCDQEYKFSIDVSEYYSGGESDSDV 1687
LG DQ+Y +++ + ++ ++V
Sbjct: 2176 LGMDQQYDIYLNIIPTSTSAQATTEV 2201
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 18/210 (8%)
Query: 1463 VDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRC 1522
V A R+++A ++ W + + ++++I + +W S L+Q ++ +
Sbjct: 1091 VAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWVSPLRQFSVLPPSVLSKL 1150
Query: 1523 TEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSS 1582
EK + TV + ++ D+ +L + L V + ++ P+I + + R
Sbjct: 1151 EEKNL-TVDKMKDMRKDEIGHMLHHVKIGL-KVKQCVHQIPSIAMEATIQPITRTVLRVR 1208
Query: 1583 VNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIK--- 1639
+N+ + D+V G V P WW+ + DP + + + +Q+K I
Sbjct: 1209 LNITPDFTWNDQVHGTVGEP---------WWIWVEDPTNDHIYHSEYFIIQKKQVITKEP 1259
Query: 1640 --LDFVAP--NPGHHSYALYFMSDAYLGCD 1665
L F P P Y + +SD +LG +
Sbjct: 1260 QLLVFTIPIFEPLPSQYYIRAVSDRWLGAE 1289
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
GN=ascc3 PE=3 SV=1
Length = 2201
Score = 600 bits (1548), Expect = e-170, Method: Compositional matrix adjust.
Identities = 312/769 (40%), Positives = 456/769 (59%), Gaps = 97/769 (12%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL---------------- 804
P GAGKTN+A+L +L EI +H G I +EFKI+YVAPM++L
Sbjct: 500 PTGAGKTNIAMLTVLHEIRQHFQ-QGVIKKNEFKIVYVAPMKALAAEMTNYFSKRLEPLG 558
Query: 805 --VQEMVGNFGK----------------------------------------DEIHLLHD 822
V+E+ G+ DE+HLLH+
Sbjct: 559 IVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHE 618
Query: 823 ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRP 882
+RGPVLE+++ART+R +E+TQ +R++GLSATLPNY DVAT L + P GLF+FD FRP
Sbjct: 619 DRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLFFFDGRFRP 678
Query: 883 VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHA-GRNQLLVFVHSRKETGKTARAIRDM 941
V L Q ++G+ +++ M+++ YE V++ +Q++VFVH+R T +TA ++ +
Sbjct: 679 VPLGQTFLGIKSANKVQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIER 738
Query: 942 CLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLF 1001
+ FL + + +N ++R+L P GF+IHHAGM R DR L
Sbjct: 739 AKNNGQICYFLPTQGPEYGHAEKQVQKSRNRQVRELFPDGFSIHHAGMLRQDRNL----- 793
Query: 1002 ADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTV 1061
VE LF++ HI+VLV TATLAWGVNLPAH V
Sbjct: 794 ------------------------------VESLFSNGHIKVLVCTATLAWGVNLPAHAV 823
Query: 1062 IIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQ 1121
IIKGTQIY ++G +V+LG LDV+Q+ GRAGRPQ+D GEG++IT H +L +YLSLL Q
Sbjct: 824 IIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQ 883
Query: 1122 LPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKED 1181
P+ESQ + L D LNAEI LGTV N+++AV W+ YTYLY+RM P +YGISH A + D
Sbjct: 884 NPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQID 943
Query: 1182 PLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLK 1241
P L HR L+ L+++ +I+++ ++G+ T+LGR ASHYY + T+ T+N+L
Sbjct: 944 PTLAKHREQLVIEVGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFD 1003
Query: 1242 PTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMER-APIPIKESTDEPSAKVNILLQA 1300
+E ++F + S + EF I VREEE EL L+ + + K+NILLQ
Sbjct: 1004 AHKTESDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSAPGGVENSYGKINILLQT 1063
Query: 1301 YISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQS 1360
YIS+ +++ F+L+SD +V Q+AAR++RA+FEI L + W + + L+L K++D+R+W
Sbjct: 1064 YISRGEVDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGW 1123
Query: 1361 MSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLE 1420
SPLRQF +P I+ ++E+KN ++L D+ +EIG ++ +G + + VHQ P +
Sbjct: 1124 TSPLRQFSVLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVT 1183
Query: 1421 LATHIQPITRSTLRVELTISPDFQWDEKLHGG-SEGFWILVEDVDSEAI 1468
+ IQPITR+ LRV L+ISPDF W++++HG E +WI VED ++ I
Sbjct: 1184 MEASIQPITRTVLRVTLSISPDFSWNDQVHGTVGEPWWIWVEDPTNDHI 1232
Score = 291 bits (745), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 185/556 (33%), Positives = 286/556 (51%), Gaps = 53/556 (9%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
DEIHLL +ERGPVLE +++RT T++ VR+VGLS L N +D+A L I+ + GLF
Sbjct: 1453 DEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIR-QMGLF 1511
Query: 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934
F S RPV LE G + R MN ++ + H+ +L+FV SR++T T
Sbjct: 1512 NFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLT 1571
Query: 935 ARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDR 994
A + ++ Q+L ME + +++ L+ L +G +HHAG+ DR
Sbjct: 1572 ALELIAFLATEEDPKQWLNMDEREMENI---IGTIRDSNLKLTLAFGIGMHHAGLHERDR 1628
Query: 995 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGV 1054
V E+LF + IQVL++T+TLAWGV
Sbjct: 1629 KTV-----------------------------------EELFVNCKIQVLIATSTLAWGV 1653
Query: 1055 NLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYY 1114
N PAH VIIKGT+ Y+ + R+V+ DVLQM+GRAGRPQ+D +G+ V++ + + +Y
Sbjct: 1654 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1713
Query: 1115 LSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAP---NLY 1171
L PVES ++ L D LNAEI GT+ + +DA+ ++ +TY + R++ P NL
Sbjct: 1714 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLS 1773
Query: 1172 GISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHE 1231
+SHD++ + ++L+ + + LE S I+ + ++ GRIAS+YY H+
Sbjct: 1774 DVSHDSVNK------FLSNLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQ 1827
Query: 1232 TMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEE---KLELQKLMERAPIPIKESTD 1288
T+ + + LKP EL + S + E+ + VR E EL K + P S D
Sbjct: 1828 TVKMFKERLKPECGTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPLESNP--HSFD 1885
Query: 1289 EPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALS 1348
P K ++LLQA++S+ L +D V A R+ +A+ ++ ++GW S
Sbjct: 1886 SPHTKAHLLLQAHLSRTMLPCPDYDTDTKTVLDQALRVCQAMLDVAAHQGWLVTVLNITS 1945
Query: 1349 LCKMVDRRMWQSMSPL 1364
L +MV + W S L
Sbjct: 1946 LVQMVIQGRWLKDSSL 1961
Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 191/703 (27%), Positives = 315/703 (44%), Gaps = 134/703 (19%)
Query: 68 KVKRQKRDE--AQYDFTRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFIQEALG 125
++KR K E D T MK L+E ++ + + Q + + +L ++ +G
Sbjct: 30 QMKRSKLHEQIVGLDLTWMKIVKFLNEKLE-------KSEMQRVNEDLKAILQAAKQIVG 82
Query: 126 -DQPRDILCGAADEVLTVLKNDRMKEKEKKKETENLLGSLAEERFALLVNLGKKITDFGA 184
D ++ + AA + ++ K + + G + +IT
Sbjct: 83 TDNGKEAIESAAAFLFKTFHLKDCVGHQETKAIKQMFGPFPSSSATAACDATNRITSHFC 142
Query: 185 EQKST-----TAEENIDDT-YGINVQFEESEDEDDEDTFGEVREAEELDDEGEEARVNTA 238
+ T T +EN D +G N+ F S D D D F +EL GE + +
Sbjct: 143 KDSLTALVQMTTDENGDRVLFGKNLAF--SFDMHDLDHF------DELPINGESQKTISL 194
Query: 239 IHAENLAGGEDAEGT-----GRKKDKSLHPLDIDAYWLQRRLSKIYDDAMVSQAKAGEVL 293
+ + L T K + S +++ Y L L+++ + + +
Sbjct: 195 DYKKFLTDHLQDHSTLNRKPAEKTNDSFLWCEVEKY-LNATLNEMAEATRIEDL-CCTLY 252
Query: 294 NILKSAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASS------------- 340
++L S + +++L LLG D + I+ L + R I+ L +S+
Sbjct: 253 DMLASVKSGDELQDELFELLGPDGLELIEKLLQNRVTIVDRFLNSSNDHKLQALQDNCKK 312
Query: 341 ----------------QSESERQKLRDTMSEDPALAKILRQLDTGKNEDGDANDSADARQ 384
QSE E+Q ++ E+ +A+ R+ G EDG+A +
Sbjct: 313 ILGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIAR--REKKAG--EDGEATEGLLCFD 368
Query: 385 STSIRHQMGQGGGDGVAVVAGTRQV-LDLEDLQFSS----------GSHFMSNKRCELPD 433
+R Q + V +RQ D+E +++ S F++ + LP+
Sbjct: 369 PKELRIHREQALMNARNVPILSRQRDTDVEKIRYPHVYDSQAEAMRTSAFIAGAKMILPE 428
Query: 434 GSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSA 493
G R+ K YEEV +P +P P+G +E V I L Q AF+ + LNRIQS + ++A
Sbjct: 429 GIQRENNKIYEEVKIPYTEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRLNRIQSIVFETA 488
Query: 494 LESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL----- 548
++EN+L+CAPTGAGKTN+A+L +L EI +H G I +EFKI+YVAPM++L
Sbjct: 489 YNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQ-QGVIKKNEFKIVYVAPMKALAAEMT 547
Query: 549 -------------VQEMVGNFGK------------------------------------- 558
V+E+ G+
Sbjct: 548 NYFSKRLEPLGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKL 607
Query: 559 ---DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPET 615
DE+HLLH++RGPVLE+++ART+R +E+TQ +R++GLSATLPNY DVAT L + P
Sbjct: 608 LILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPCI 667
Query: 616 GLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVME 658
GLF+FD FRPV L Q ++G+ +++ M+++ YE V++
Sbjct: 668 GLFFFDGRFRPVPLGQTFLGIKSANKVQQLNNMDEVCYESVLK 710
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 67/95 (70%), Gaps = 3/95 (3%)
Query: 668 STLRVELTISPDFQWDEKLHGG-SEGFWILVEDVDSEVVLHHEYFLL--KSRYATDDHVV 724
+ LRV L+ISPDF W++++HG E +WI VED ++ + H EYFL+ K + + ++
Sbjct: 1194 TVLRVTLSISPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQLL 1253
Query: 725 KFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
F +P+FEPLP QY++R VSDRW+GAE + ++F+
Sbjct: 1254 VFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQ 1288
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 115/263 (43%), Gaps = 68/263 (25%)
Query: 463 VPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEI 522
+P+ L A +F N +Q+++ + +D N+LL APTG+GKT A L + +
Sbjct: 1308 LPVTALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVF 1367
Query: 523 GKHINADGTINADEFKIIYVAPMRSL-----------VQEMVG----------------- 554
K+ + K +Y+AP+++L ++E +G
Sbjct: 1368 NKYPTS---------KAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSI 1418
Query: 555 -----------------------NFGK-------DEIHLLHDERGPVLEALIARTIRNIE 584
N+ K DEIHLL +ERGPVLE +++RT
Sbjct: 1419 AKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRTNFISS 1478
Query: 585 ATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKR 644
T++ VR+VGLS L N +D+A L I+ + GLF F S RPV LE G + R
Sbjct: 1479 HTEKPVRIVGLSTALANARDLADWLNIR-QMGLFNFRPSVRPVPLEVHIQGFPGQHYCPR 1537
Query: 645 FQVMNDIVYEKVMEHAGRNQLLV 667
MN ++ + H+ +L+
Sbjct: 1538 MASMNKPTFQAIRSHSPAKPVLI 1560
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 1600 IAPFYPQKREEGWWVVIGDPKTNSLLSIKRL-TLQQKAKIKLDFVAPN-PGHHSYALYFM 1657
+ P +P+ ++EGW++++G+ L+++KR+ ++ + + F P PG + Y LYFM
Sbjct: 2103 VTPRFPKSKDEGWFLILGEVDKRELIALKRVGYVRSHHMVSISFYTPEVPGRYIYTLYFM 2162
Query: 1658 SDAYLGCDQEYKFSIDVSEYYSGGESD 1684
SD YLG DQ+Y + V+ ++D
Sbjct: 2163 SDCYLGLDQQYDIHLHVTPASISAQAD 2189
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 1466 EAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHF 1514
+A+R+ QA +DV + GWL + + QM+ Q W KDS L +PH
Sbjct: 1919 QALRVCQAMLDVAAHQGWLVTVLNITSLVQMVIQGRWLKDSSLLTIPHI 1967
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 92/211 (43%), Gaps = 20/211 (9%)
Query: 1463 VDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRC 1522
V A R+++A ++ W + + ++++I + +W S L+Q I+ R
Sbjct: 1082 VAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQFSVLPPHILTRL 1141
Query: 1523 TEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSS 1582
EK + TV + ++ D+ +L L V + ++ P++ + + R +
Sbjct: 1142 EEKNL-TVDKLKDMRKDEIGHILHHVNIGL-KVKQCVHQIPSVTMEASIQPITRTVLRVT 1199
Query: 1583 VNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSL------LSIKRLTLQQKA 1636
+++ + D+V G V P WW+ + DP + + L +K+ + ++A
Sbjct: 1200 LSISPDFSWNDQVHGTVGEP---------WWIWVEDPTNDHIYHSEYFLVLKKQVISKEA 1250
Query: 1637 KIKLDFVAP--NPGHHSYALYFMSDAYLGCD 1665
++ L F P P Y + +SD +LG +
Sbjct: 1251 QL-LVFTIPIFEPLPSQYYIRAVSDRWLGAE 1280
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
GN=Ascc3 PE=2 SV=1
Length = 2198
Score = 596 bits (1537), Expect = e-169, Method: Compositional matrix adjust.
Identities = 312/770 (40%), Positives = 458/770 (59%), Gaps = 99/770 (12%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL---------------- 804
P GAGKTN+A+L +L EI +H + G I +EFKI+YVAPM++L
Sbjct: 501 PTGAGKTNIAMLTILHEIRQHFH-QGVIKKNEFKIVYVAPMKALAAEMTNYFSKRLEPLG 559
Query: 805 --VQEMVGNFGK----------------------------------------DEIHLLHD 822
V+E+ G+ DE+HLLH+
Sbjct: 560 IVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHE 619
Query: 823 ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRP 882
+RGPVLE+++ART+R +E+TQ +R++GLSATLPNY DVAT L + P GLFYFD FRP
Sbjct: 620 DRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRP 679
Query: 883 VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHA-GRNQLLVFVHSRKETGKTARAIRDM 941
V L Q ++G+ +++ M+++ YE V++ +Q++VFVH+R T +TA ++ +
Sbjct: 680 VPLGQTFLGIKSTNKMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIER 739
Query: 942 CLEKDTLGQFL-REGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDL 1000
+ FL EG L+ + + +N ++R+L GF+IHHAGM R DR L
Sbjct: 740 AKNSGQISCFLPTEGPEYGHALK-QVQKSRNKQVRELFSDGFSIHHAGMLRQDRNL---- 794
Query: 1001 FADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHT 1060
VE+LF++ HI+VLV TATLAWGVNLPAH
Sbjct: 795 -------------------------------VENLFSNGHIKVLVCTATLAWGVNLPAHA 823
Query: 1061 VIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNH 1120
V+IKGTQIY ++G +V+LG LDV+Q+ GRAGRPQ+D GEG++IT H +L +YLSLL
Sbjct: 824 VVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQ 883
Query: 1121 QLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKE 1180
Q P+ESQ + L D LNAEI LGTV N+++AV W+ YTYLY+RM P YGISH A +
Sbjct: 884 QNPIESQFLESLADNLNAEIALGTVTNVEEAVRWMSYTYLYVRMRANPLAYGISHKAYQI 943
Query: 1181 DPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLL 1240
DP L HR L+ L+++ +I+++ ++G+ T+LGR ASH+Y + T+ T+N+L
Sbjct: 944 DPTLRKHREQLLIEVGQKLDKAKMIRFEERTGYFSSTDLGRTASHFYIKYNTIETFNELF 1003
Query: 1241 KPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMER-APIPIKESTDEPSAKVNILLQ 1299
+E ++F + S + EF I VREEE EL L+ + + K+NILLQ
Sbjct: 1004 DAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQ 1063
Query: 1300 AYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQ 1359
YIS+ +++ F+L+SD +V Q+AAR++RA+FEI L + W + + L+L K++D+R+W
Sbjct: 1064 TYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWG 1123
Query: 1360 SMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKL 1419
SPLRQF +P I+ ++E+KN ++L D+ +EIG ++ +G + + VHQ P +
Sbjct: 1124 WASPLRQFSVLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSV 1183
Query: 1420 ELATHIQPITRSTLRVELTISPDFQWDEKLHGG-SEGFWILVEDVDSEAI 1468
+ IQPITR+ LRV L I PDF W++++HG E +WI VED ++ I
Sbjct: 1184 TMEASIQPITRTVLRVSLNIHPDFSWNDQVHGTVGEPWWIWVEDPTNDHI 1233
Score = 288 bits (737), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 188/567 (33%), Positives = 289/567 (50%), Gaps = 50/567 (8%)
Query: 802 RSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDV 861
RS VQ+ V DEIHLL +ERGPVLE +++RT T++ VR+VGLS L N +D+
Sbjct: 1442 RSYVQQ-VNILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDL 1500
Query: 862 ATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQL 921
A L IK + GLF F S RPV LE G + R MN ++ + H+ +
Sbjct: 1501 ADWLNIK-QMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSPAKPV 1559
Query: 922 LVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYG 981
L+FV SR++T TA + ++ Q+L M+ + V++ L+ L +G
Sbjct: 1560 LIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEQEMDNI---IGTVRDSNLKLTLAFG 1616
Query: 982 FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHI 1041
+HHAG+ DR V E+LF + +
Sbjct: 1617 IGMHHAGLHERDRKTV-----------------------------------EELFVNCKV 1641
Query: 1042 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101
QVL++T+TLAWGVN PAH VIIKGT+ Y+ + R+V+ DVLQM+GRAGRPQ+D +G+
Sbjct: 1642 QVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGK 1701
Query: 1102 GVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLY 1161
V++ + + +Y L PVES ++ L D LNAEI GT+ + +DA+ ++ +TY +
Sbjct: 1702 AVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFF 1761
Query: 1162 IRMLRAPNLYG---ISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTE 1218
R++ P+ Y +S D++ + + LI + + LE S I+ + ++
Sbjct: 1762 RRLIMNPSYYSLGDVSQDSINK------FLSHLIGQSLVELELSHCIEVGEDNRTIEPLT 1815
Query: 1219 LGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMER 1278
GRIAS+YY H+T+ + LKP S EL + S + E+ + VR E +L +
Sbjct: 1816 CGRIASYYYLKHKTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKC 1875
Query: 1279 APIPIK-ESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYR 1337
PI + S D P K ++LLQA++S+ L +D V A R+ +A+ ++ +
Sbjct: 1876 LPIELNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQ 1935
Query: 1338 GWAQLADKALSLCKMVDRRMWQSMSPL 1364
GW L +MV + W S L
Sbjct: 1936 GWLVTVLNITHLIQMVIQGRWLKDSSL 1962
Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 148/466 (31%), Positives = 232/466 (49%), Gaps = 108/466 (23%)
Query: 294 NILKSAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASS------------- 340
++L SA + +++L LLG + D I+ L + R I+ L +SS
Sbjct: 253 DMLASAKSGDELQDELFELLGPEGLDLIEKLLQNRITIVDRFLNSSSDHKFQVLQDSCKK 312
Query: 341 ----------------QSESERQKLRDTMSEDPALAKILRQLDTGKNEDGDANDSA---- 380
QSE E+Q ++ E+ +A+ R+ G EDG+ +
Sbjct: 313 ILGENSKPNYGCQVTIQSEQEKQLMKQYRREEKRIAR--REKKAG--EDGEVSGEGVLPF 368
Query: 381 DARQSTSIRHQMGQGGGDGVAVVAGTRQVLDLEDLQFS----------SGSHFMSNKRCE 430
D ++ R + A + G ++ ++ E +++ S F++ +
Sbjct: 369 DPKELRIQREHALLNARN--APILGRQRDVEFEKIRYPHVYDSQAQARETSAFIAGAKMI 426
Query: 431 LPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNRIQSRLC 490
LP+G R+ K YEEV +P +P P+G +E V I L Q AF+ K LNRIQS +
Sbjct: 427 LPEGIQRENTKLYEEVRIPYGEPMPVGFEEKPVYIKDLDEVGQLAFKGMKRLNRIQSIVF 486
Query: 491 KSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL-- 548
++A ++EN+L+CAPTGAGKTN+A+L +L EI +H + G I +EFKI+YVAPM++L
Sbjct: 487 ETAYNTNENMLICAPTGAGKTNIAMLTILHEIRQHFH-QGVIKKNEFKIVYVAPMKALAA 545
Query: 549 ----------------VQEMVGNFGK---------------------------------- 558
V+E+ G+
Sbjct: 546 EMTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQI 605
Query: 559 ------DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIK 612
DE+HLLH++RGPVLE+++ART+R +E+TQ +R++GLSATLPNY DVAT L +
Sbjct: 606 VKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVN 665
Query: 613 PETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVME 658
P GLFYFD FRPV L Q ++G+ +++ M+++ YE V++
Sbjct: 666 PYIGLFYFDGRFRPVPLGQTFLGIKSTNKMQQLNNMDEVCYESVLK 711
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 111/255 (43%), Gaps = 52/255 (20%)
Query: 463 VPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEI 522
+PI L A +F N +Q+++ + +D N+LL APTG+GKT A L + +
Sbjct: 1309 LPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVF 1368
Query: 523 GKHINADGTINA----------DEFKI-----------------------------IYVA 543
K+ + A D++KI I
Sbjct: 1369 NKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTT 1428
Query: 544 P-----------MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRL 592
P RS VQ+ V DEIHLL +ERGPVLE +++RT T++ VR+
Sbjct: 1429 PEKWDGVSRSWQNRSYVQQ-VNILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRI 1487
Query: 593 VGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIV 652
VGLS L N +D+A L IK + GLF F S RPV LE G + R MN
Sbjct: 1488 VGLSTALANARDLADWLNIK-QMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPA 1546
Query: 653 YEKVMEHAGRNQLLV 667
++ + H+ +L+
Sbjct: 1547 FQAIRSHSPAKPVLI 1561
Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 65/95 (68%), Gaps = 3/95 (3%)
Query: 668 STLRVELTISPDFQWDEKLHGG-SEGFWILVEDVDSEVVLHHEYFL-LKSRYATDD-HVV 724
+ LRV L I PDF W++++HG E +WI VED ++ + H EYFL LK + + ++
Sbjct: 1195 TVLRVSLNIHPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQLL 1254
Query: 725 KFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
F +P+FEPLP QY++R VSDRW+GAE + ++F+
Sbjct: 1255 VFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQ 1289
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 115/285 (40%), Gaps = 75/285 (26%)
Query: 1466 EAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFN---------- 1515
+A+R+ QA +DV +S GWL + + QM+ Q W KDS L +P+
Sbjct: 1920 QALRVCQAMLDVAASQGWLVTVLNITHLIQMVIQGRWLKDSSLLTIPNIEQHHLHLFRKW 1979
Query: 1516 ------------------ADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVAR 1557
++I C +G + VF M + +L ++
Sbjct: 1980 KPPVKSSHAKCRTSIECLPELIHAC--EGKDHVFSSMVEK--------ELQPAKTKQAWN 2029
Query: 1558 FCNRYPNI------------------ELSYEVLNKDR--------ISSGSSVNVVVNLDR 1591
F +R P I ELS L D+ + + + V+L R
Sbjct: 2030 FLSRLPVINVGISVKGSWDDLVEGHNELSISTLTADKRDENKWIKLHADQEYVLQVSLQR 2089
Query: 1592 ------EDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTL---QQKAKIKLDF 1642
+ + + P +P+ ++EGW++++G+ L+++KR+ A I F
Sbjct: 2090 VHFGLPKGKHENHAVTPRFPKLKDEGWFLILGEVDKRELMAVKRVGFVRTHHDASISF-F 2148
Query: 1643 VAPNPGHHSYALYFMSDAYLGCDQEYKFSIDVSEYYSGGESDSDV 1687
PG + + LY MSD YLG DQ+Y ++V + + DSDV
Sbjct: 2149 TPETPGRYIFTLYLMSDCYLGLDQQYDIYLNVIK-ANISTKDSDV 2192
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 93/211 (44%), Gaps = 20/211 (9%)
Query: 1463 VDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRC 1522
V A R+++A ++ W + + ++++I + +W S L+Q I+ R
Sbjct: 1083 VAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRL 1142
Query: 1523 TEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSS 1582
EK + TV + ++ D+ +L L V + ++ P++ + + R S
Sbjct: 1143 EEKNL-TVDKLKDMRKDEIGHILHHVNIGL-KVKQCVHQIPSVTMEASIQPITRTVLRVS 1200
Query: 1583 VNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSL------LSIKRLTLQQKA 1636
+N+ + D+V G V P WW+ + DP + + L++K+ + ++A
Sbjct: 1201 LNIHPDFSWNDQVHGTVGEP---------WWIWVEDPTNDHIYHSEYFLALKKQVINKEA 1251
Query: 1637 KIKLDFVAP--NPGHHSYALYFMSDAYLGCD 1665
++ L F P P Y + +SD +LG +
Sbjct: 1252 QL-LVFTIPIFEPLPSQYYIRAVSDRWLGAE 1281
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus
norvegicus GN=Ascc3 PE=2 SV=1
Length = 2197
Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust.
Identities = 310/769 (40%), Positives = 454/769 (59%), Gaps = 97/769 (12%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL---------------- 804
P GAGKTN+A+L +L EI +H + G + +EFKI+YVAPM++L
Sbjct: 501 PTGAGKTNIAMLTVLHEIRQHFH-QGVLKKNEFKIVYVAPMKALAAEMTNYFSKRLEPLG 559
Query: 805 --VQEMVGNFGK----------------------------------------DEIHLLHD 822
V+E+ G+ DE+HLLH+
Sbjct: 560 IVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHE 619
Query: 823 ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRP 882
+RGPVLE+++ART+R +E+TQ +R++GLSATLPNY DVAT L + P GLFYFD FRP
Sbjct: 620 DRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRP 679
Query: 883 VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHA-GRNQLLVFVHSRKETGKTARAIRDM 941
V L Q ++G+ +++ M+++ YE V++ +Q++VFVH+R T +TA ++ +
Sbjct: 680 VPLGQTFLGIKSANKMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIER 739
Query: 942 CLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLF 1001
+ FL + + +N ++R+L GF+IHHAGM R DR L
Sbjct: 740 AKNSGQISCFLPTQGPEYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNL----- 794
Query: 1002 ADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTV 1061
VE+LF++ HI+VLV TATLAWGVNLPAH V
Sbjct: 795 ------------------------------VENLFSNGHIKVLVCTATLAWGVNLPAHAV 824
Query: 1062 IIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQ 1121
IIKGTQIY ++G +V+LG LDV+Q+ GRAGRPQ+D GEG++IT H +L +YLSLL Q
Sbjct: 825 IIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQ 884
Query: 1122 LPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKED 1181
P+ESQ + L D LNAEI LGTV N+++AV W+ YTYLY+RM P YGISH A + D
Sbjct: 885 NPIESQFLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAYGISHKAYQMD 944
Query: 1182 PLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLK 1241
P L HR L+ L+++ +I+++ ++G+ T+LGR ASHYY + T+ T+N+L
Sbjct: 945 PTLRKHREQLLIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFD 1004
Query: 1242 PTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMER-APIPIKESTDEPSAKVNILLQA 1300
+E ++F + S + EF I VREEE EL L+ + + K+NILLQ
Sbjct: 1005 AHKTEGDIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQT 1064
Query: 1301 YISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQS 1360
YIS+ +++ F+L+SD +V Q+AAR++RA+FEI L + W + + L+L K++D+R+W
Sbjct: 1065 YISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGW 1124
Query: 1361 MSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLE 1420
SPLRQF +P I+ ++E+KN ++L D+ +EIG ++ +G + + VHQ P +
Sbjct: 1125 ASPLRQFSVLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVT 1184
Query: 1421 LATHIQPITRSTLRVELTISPDFQWDEKLHGG-SEGFWILVEDVDSEAI 1468
+ IQPITR+ LRV L I PDF W++++HG E +WI VED ++ I
Sbjct: 1185 MEASIQPITRTVLRVSLNIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHI 1233
Score = 273 bits (698), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 186/567 (32%), Positives = 281/567 (49%), Gaps = 51/567 (8%)
Query: 802 RSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDV 861
RS VQ+ V DEIHLL +ERGPVLE +++RT T++ VR+VGLS L N +D+
Sbjct: 1442 RSYVQQ-VNILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDL 1500
Query: 862 ATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQL 921
A L IK + GLF F S RPV LE G + R MN +++ H
Sbjct: 1501 ADWLNIK-QMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQESHTHCPDRPC 1559
Query: 922 LVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYG 981
L+ + I + E+D Q+L ME + V++ L+ L +G
Sbjct: 1560 LLLPERMLSSMTKLELIAFLATEEDP-KQWLNMDEQEMENI---IATVRDSNLKLTLAFG 1615
Query: 982 FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHI 1041
+HHAG+ DR V E+LF + +
Sbjct: 1616 IGMHHAGLHERDRKTV-----------------------------------EELFVNCKV 1640
Query: 1042 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101
QVL++T+TLAWGVN PAH VIIKGT+ Y+ + R+V+ DVLQM+GRAGRPQ+D +G+
Sbjct: 1641 QVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGK 1700
Query: 1102 GVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLY 1161
V++ + + +Y L PVES ++ L D LNAEI GT+ + +DA+ ++ +TY +
Sbjct: 1701 AVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFF 1760
Query: 1162 IRMLRAPNLYG---ISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTE 1218
R++ P+ Y +S DA+ + + LI + + LE S I+ + ++
Sbjct: 1761 RRLIMNPSYYNLGDVSQDAINK------FLSHLIGQSLVELELSHCIEVGEDNRSIEPLT 1814
Query: 1219 LGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMER 1278
GRIAS+YY H+T+ + LKP S EL + S + E+ + VR E +L +
Sbjct: 1815 CGRIASYYYLKHKTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKC 1874
Query: 1279 APIPIK-ESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYR 1337
PI + S D P K ++LLQA++S+ L +D V A R+ +A+ ++ +
Sbjct: 1875 LPIELNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQ 1934
Query: 1338 GWAQLADKALSLCKMVDRRMWQSMSPL 1364
GW L +MV + W S L
Sbjct: 1935 GWLVTTLNITHLIQMVIQGRWLKDSSL 1961
Score = 214 bits (544), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 168/296 (56%), Gaps = 59/296 (19%)
Query: 421 SHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFK 480
S F++ + LP+G R+ K YEEV +P +P P+G +E V I L Q AF+ K
Sbjct: 417 SAFIAGAKMILPEGIQRENTKLYEEVRIPYSEPMPVGFEEKPVYIQDLDEVGQLAFKGMK 476
Query: 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKII 540
LNRIQS + +A ++EN+L+CAPTGAGKTN+A+L +L EI +H + G + +EFKI+
Sbjct: 477 RLNRIQSIVFDTAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFH-QGVLKKNEFKIV 535
Query: 541 YVAPMRSL------------------VQEMVGNFGK------------------------ 558
YVAPM++L V+E+ G+
Sbjct: 536 YVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRK 595
Query: 559 ----------------DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNY 602
DE+HLLH++RGPVLE+++ART+R +E+TQ +R++GLSATLPNY
Sbjct: 596 SVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNY 655
Query: 603 KDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVME 658
DVAT L + P GLFYFD FRPV L Q ++G+ +++ M+++ YE V++
Sbjct: 656 LDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSANKMQQLNNMDEVCYESVLK 711
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 65/95 (68%), Gaps = 3/95 (3%)
Query: 668 STLRVELTISPDFQWDEKLHGG-SEGFWILVEDVDSEVVLHHEYFL-LKSRYATDD-HVV 724
+ LRV L I PDF W++++HG E +WI VED ++ + H EYFL LK + + ++
Sbjct: 1195 TVLRVSLNIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQLL 1254
Query: 725 KFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
F +P+FEPLP QY++R VSDRW+GAE + ++F+
Sbjct: 1255 VFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQ 1289
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 107/248 (43%), Gaps = 52/248 (20%)
Query: 463 VPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEI 522
+P+ L A +F N +Q+++ + +D N+LL APTG+GKT A L + +
Sbjct: 1309 LPVTALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVF 1368
Query: 523 GKHINADGTINA----------DEFKI-----------------------------IYVA 543
K+ + A D++KI I
Sbjct: 1369 NKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTT 1428
Query: 544 P-----------MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRL 592
P RS VQ+ V DEIHLL +ERGPVLE +++RT T++ VR+
Sbjct: 1429 PEKWDGVSRSWQNRSYVQQ-VNILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRI 1487
Query: 593 VGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIV 652
VGLS L N +D+A L IK + GLF F S RPV LE G + R MN
Sbjct: 1488 VGLSTALANARDLADWLNIK-QMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPA 1546
Query: 653 YEKVMEHA 660
+++ H
Sbjct: 1547 FQESHTHC 1554
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 114/273 (41%), Gaps = 72/273 (26%)
Query: 1466 EAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFN---------- 1515
+A+R+ QA +DV +S GWL + + QM+ Q W KDS L +P+
Sbjct: 1919 QALRVCQAMLDVAASQGWLVTTLNITHLIQMVIQGRWLKDSSLLTIPNIEQHHLHLFRKW 1978
Query: 1516 ------------------ADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVAR 1557
++I C +G E VF M + +L ++
Sbjct: 1979 KPPVKGPHAKCRTSIECLPELIHAC--EGKEHVFSSMVEK--------ELQPAKTKQAWN 2028
Query: 1558 FCNRYP--NIELSYEVLNKDRISSGSSVNV-VVNLDREDEVT------------------ 1596
F + P N+ +S + D + + +++ + D+ DE T
Sbjct: 2029 FLSHLPVINVGISVKGSWDDSVEGHNELSISTLTADKRDENTWIKLHADQQYVLQVSLQR 2088
Query: 1597 -----------GPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLT-LQQKAKIKLDFVA 1644
+ P +P+ ++EGW++++G+ L+++KR+ ++ + + F
Sbjct: 2089 VHFEFHKVKHESHAVTPRFPKLKDEGWFLILGEVDKRELVAVKRVGFVRTHHEASISFFT 2148
Query: 1645 PN-PGHHSYALYFMSDAYLGCDQEYKFSIDVSE 1676
P PG + + LY MSD YLG DQ+Y ++V++
Sbjct: 2149 PEAPGRYIFTLYLMSDCYLGLDQQYDIFLNVTK 2181
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 93/211 (44%), Gaps = 20/211 (9%)
Query: 1463 VDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRC 1522
V A R+++A ++ W + + ++++I + +W S L+Q I+ R
Sbjct: 1083 VAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRL 1142
Query: 1523 TEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSS 1582
EK + TV + ++ D+ +L L V + ++ P++ + + R S
Sbjct: 1143 EEKNL-TVDKLKDMRKDEIGHILHHVNIGL-KVKQCVHQIPSVTMEASIQPITRTVLRVS 1200
Query: 1583 VNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSL------LSIKRLTLQQKA 1636
+N+ + D+V G V P WW+ + DP + + L++K+ + ++A
Sbjct: 1201 LNIYPDFSWNDQVHGTVGEP---------WWIWVEDPTNDHIYHSEYFLALKKQVINKEA 1251
Query: 1637 KIKLDFVAP--NPGHHSYALYFMSDAYLGCD 1665
++ L F P P Y + +SD +LG +
Sbjct: 1252 QL-LVFTIPIFEPLPSQYYIRAVSDRWLGAE 1281
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 587 bits (1512), Expect = e-166, Method: Compositional matrix adjust.
Identities = 306/769 (39%), Positives = 453/769 (58%), Gaps = 97/769 (12%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL---------------- 804
P GAGKTN+A+L +L EI +H G I +EFKI+YVAPM++L
Sbjct: 500 PTGAGKTNIAMLTVLHEIRQHFQ-QGVIKKNEFKIVYVAPMKALAAEMTDYFSRRLEPLG 558
Query: 805 --VQEMVGNFGK----------------------------------------DEIHLLHD 822
V+E+ G+ DE+HLLH+
Sbjct: 559 IIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRLLILDEVHLLHE 618
Query: 823 ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRP 882
+RGPVLE+++ART+R +E+TQ +R++GLSATLPNY DVAT L + P GLF+FD FRP
Sbjct: 619 DRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRP 678
Query: 883 VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHA-GRNQLLVFVHSRKETGKTARAIRDM 941
V L Q ++G+ +++ M+++ YE V++ +Q++VFVH+R T +TA ++ +
Sbjct: 679 VPLGQTFLGIKCANKMQQLNNMDEVCYENVLKQVKAGHQVMVFVHARNATVRTAMSLIER 738
Query: 942 CLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLF 1001
+ F + + + +N ++R+L P GF+IHHAGM R DR L
Sbjct: 739 AKNCGHIPFFFPTQGHDYVLAEKQVQRSRNKQVRELFPDGFSIHHAGMLRQDRNL----- 793
Query: 1002 ADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTV 1061
VE+LF++ HI+VLV TATLAWGVNLPAH V
Sbjct: 794 ------------------------------VENLFSNGHIKVLVCTATLAWGVNLPAHAV 823
Query: 1062 IIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQ 1121
IIKGTQIY ++G +V+LG LDV+Q+ GRAGRPQ+D GEG++IT H +L +YL+LL +
Sbjct: 824 IIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQR 883
Query: 1122 LPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKED 1181
P+ESQ + L D LNAEI LGTV N+++AV W+ YTYLY+RM P YGISH A + D
Sbjct: 884 NPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQID 943
Query: 1182 PLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLK 1241
P L HR L+ L+++ +I+++ ++G+ T+LGR ASHYY + T+ T+N+L
Sbjct: 944 PTLRKHREQLVIEVGRKLDKAQMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFD 1003
Query: 1242 PTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMER-APIPIKESTDEPSAKVNILLQA 1300
+E ++F + S + EF I VREEE EL L+ + + K+NILLQ
Sbjct: 1004 AHKTEGDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSTPGGVENSYGKINILLQT 1063
Query: 1301 YISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQS 1360
YIS+ +++ F+L+SD +V Q+AAR++RA+FEI L + W + + L+L K++D+R+W
Sbjct: 1064 YISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGW 1123
Query: 1361 MSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLE 1420
SPLRQF +P I+ ++E+K ++L D+ +EIG ++ +G + + VHQ P +
Sbjct: 1124 ASPLRQFSILPPHILTRLEEKKLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVM 1183
Query: 1421 LATHIQPITRSTLRVELTISPDFQWDEKLHGG-SEGFWILVEDVDSEAI 1468
+ IQPITR+ LRV L+I DF W++++HG E +WI VED ++ I
Sbjct: 1184 MEASIQPITRTVLRVTLSIYADFTWNDQVHGTVGEPWWIWVEDPTNDHI 1232
Score = 289 bits (740), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 185/554 (33%), Positives = 284/554 (51%), Gaps = 49/554 (8%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
DEIHLL +ERGPVLE +++RT T++ VR+VGLS L N +D+A L IK + GLF
Sbjct: 1453 DEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIK-QMGLF 1511
Query: 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934
F S RPV LE G + R MN ++ + H+ +L+FV SR++T T
Sbjct: 1512 NFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLT 1571
Query: 935 ARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDR 994
A + ++ Q+L ME + V++ L+ L +G +HHAG+ DR
Sbjct: 1572 ALELIAFLATEEDPKQWLNMDEREMENI---IATVRDSNLKLTLAFGIGMHHAGLHERDR 1628
Query: 995 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGV 1054
V E+LF + +QVL++T+TLAWGV
Sbjct: 1629 KTV-----------------------------------EELFVNCKVQVLIATSTLAWGV 1653
Query: 1055 NLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYY 1114
N PAH VIIKGT+ Y+ + R+V+ DVLQM+GRAGRPQ+D +G+ V++ + + +Y
Sbjct: 1654 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1713
Query: 1115 LSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYG-- 1172
L PVES ++ L D LNAEI GT+ + +DA+ ++ +TY + R++ P+ Y
Sbjct: 1714 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLG 1773
Query: 1173 -ISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHE 1231
+SHD++ + + LI + + LE S I+ + ++ GRIAS+YY H+
Sbjct: 1774 DVSHDSVNK------FLSHLIEKSLIELELSYCIEIGEDNRSIEPLTYGRIASYYYLKHQ 1827
Query: 1232 TMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIK-ESTDEP 1290
T+ + LKP S EL + S + E+ + VR E +L + PI S D P
Sbjct: 1828 TVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPIESNPHSFDSP 1887
Query: 1291 SAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLC 1350
K ++LLQA++S+ L +D V A R+ +A+ ++ +GW +L
Sbjct: 1888 HTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLI 1947
Query: 1351 KMVDRRMWQSMSPL 1364
+MV + W S L
Sbjct: 1948 QMVIQGRWLKDSSL 1961
Score = 215 bits (547), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 133/387 (34%), Positives = 203/387 (52%), Gaps = 74/387 (19%)
Query: 341 QSESERQKLRDTMSEDPALAKILRQLDTGKNEDGDANDSADARQSTSIRHQMGQGGGDGV 400
QSE E+Q ++ E+ +A+ R+ G ED + ++ +R Q Q +
Sbjct: 329 QSEQEKQLMKQYRREEKRIAR--REKKAG--EDLEVSEGLMCFDPKELRIQREQALLNAR 384
Query: 401 AVVAGTRQV-LDLEDLQFS----------SGSHFMSNKRCELPDGSFRKQRKGYEEVHVP 449
+V +RQ D+E + + S F++ + LP+G R+ K YEEV +P
Sbjct: 385 SVPILSRQRDADVEKIHYPHVYDSQAEAMKTSAFIAGAKMILPEGIQRENNKLYEEVRIP 444
Query: 450 ALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAG 509
+P P+ +E V I L Q AF+ K LNRIQS + ++A ++EN+L+CAPTGAG
Sbjct: 445 YSEPMPLSFEEKPVYIQDLDEIGQLAFKGMKRLNRIQSIVFETAYNTNENMLICAPTGAG 504
Query: 510 KTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL------------------VQE 551
KTN+A+L +L EI +H G I +EFKI+YVAPM++L V+E
Sbjct: 505 KTNIAMLTVLHEIRQHFQ-QGVIKKNEFKIVYVAPMKALAAEMTDYFSRRLEPLGIIVKE 563
Query: 552 MVGNFGK----------------------------------------DEIHLLHDERGPV 571
+ G+ DE+HLLH++RGPV
Sbjct: 564 LTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRLLILDEVHLLHEDRGPV 623
Query: 572 LEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 631
LE+++ART+R +E+TQ +R++GLSATLPNY DVAT L + P GLF+FD FRPV L Q
Sbjct: 624 LESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRPVPLGQ 683
Query: 632 QYIGVTEKKALKRFQVMNDIVYEKVME 658
++G+ +++ M+++ YE V++
Sbjct: 684 TFLGIKCANKMQQLNNMDEVCYENVLK 710
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 109/254 (42%), Gaps = 50/254 (19%)
Query: 463 VPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEI 522
+PI L A +F N +Q+++ + +D N+LL APTG+GKT A L + +
Sbjct: 1308 LPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVF 1367
Query: 523 GKHINADGTINA----------DEFKIIYVAPMRSLVQEMVGNFGKD------------- 559
K+ + A D++K+ + V E+ G+ D
Sbjct: 1368 NKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTT 1427
Query: 560 --------------------------EIHLLHDERGPVLEALIARTIRNIEATQEDVRLV 593
EIHLL +ERGPVLE +++RT T++ VR+V
Sbjct: 1428 PEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIV 1487
Query: 594 GLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVY 653
GLS L N +D+A L IK + GLF F S RPV LE G + R MN +
Sbjct: 1488 GLSTALANARDLADWLNIK-QMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAF 1546
Query: 654 EKVMEHAGRNQLLV 667
+ + H+ +L+
Sbjct: 1547 QAIRSHSPAKPVLI 1560
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 3/107 (2%)
Query: 656 VMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGG-SEGFWILVEDVDSEVVLHHEYFLL- 713
VM A + + LRV L+I DF W++++HG E +WI VED ++ + H EYFL
Sbjct: 1182 VMMEASIQPITRTVLRVTLSIYADFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLAL 1241
Query: 714 -KSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
K + + ++ F +P+FEPLP QY++R VSDRW+GAE + ++F+
Sbjct: 1242 KKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQ 1288
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 118/274 (43%), Gaps = 52/274 (18%)
Query: 1466 EAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFN---------- 1515
+A+R+ QA +DV ++ GWL + + QM+ Q W KDS L LP+
Sbjct: 1919 QALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQGRWLKDSSLLTLPNIENHHLHLFKKW 1978
Query: 1516 ADIIKRCTEKGVETVFDIMEL-----EDDDRLRLLQLSESQLADVAR---FCNRYPNI-- 1565
I+K +G ++ + EL D + SE A + F + P I
Sbjct: 1979 KPIMKGPHARGRTSIESLPELIHACGGKDHVFSSMVESELHAAKTKQAWNFLSHLPVINV 2038
Query: 1566 ----------------ELSYEVLNKDR--------ISSGSSVNVVVNLDR------EDEV 1595
ELS L D+ + + + V+L R + +
Sbjct: 2039 GISVKGSWDDLVEGHNELSVSTLTADKRDDNKWIKLHADQEYVLQVSLQRVHFGFHKGKP 2098
Query: 1596 TGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKI-KLDFVAPN-PGHHSYA 1653
+ P +P+ ++EGW++++G+ L+++KR+ + + L F P PG + Y
Sbjct: 2099 ESCAVTPRFPKSKDEGWFLILGEVDKRELIALKRVGYIRNHHVASLSFYTPEIPGRYIYT 2158
Query: 1654 LYFMSDAYLGCDQEYKFSIDVSEYYSGGESDSDV 1687
LYFMSD YLG DQ+Y ++V++ + ++ V
Sbjct: 2159 LYFMSDCYLGLDQQYDIYLNVTQASLSAQVNTKV 2192
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 93/211 (44%), Gaps = 20/211 (9%)
Query: 1463 VDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRC 1522
V A R+++A ++ W + + ++++I + +W S L+Q I+ R
Sbjct: 1082 VAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSILPPHILTRL 1141
Query: 1523 TEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSS 1582
EK + TV + ++ D+ +L L V + ++ P++ + + R +
Sbjct: 1142 EEKKL-TVDKLKDMRKDEIGHILHHVNIGL-KVKQCVHQIPSVMMEASIQPITRTVLRVT 1199
Query: 1583 VNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSL------LSIKRLTLQQKA 1636
+++ + D+V G V P WW+ + DP + + L++K+ + ++A
Sbjct: 1200 LSIYADFTWNDQVHGTVGEP---------WWIWVEDPTNDHIYHSEYFLALKKQVISKEA 1250
Query: 1637 KIKLDFVAP--NPGHHSYALYFMSDAYLGCD 1665
++ L F P P Y + +SD +LG +
Sbjct: 1251 QL-LVFTIPIFEPLPSQYYIRAVSDRWLGAE 1280
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 562 bits (1448), Expect = e-159, Method: Compositional matrix adjust.
Identities = 313/790 (39%), Positives = 458/790 (57%), Gaps = 109/790 (13%)
Query: 741 RIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQE----------------------- 777
R+ + E IL P GAGKTN+ALL +L E
Sbjct: 489 RVFESAYKSNENIL---ISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAP 545
Query: 778 ---------------------IGKHINADGTINADEFK---IIYVAPMR----------S 803
+ K + D + E K II P +
Sbjct: 546 LKALASEMVEKFSNSLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDV 605
Query: 804 LVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT 863
+ ++V DEIHLLH+ERGPVLE ++ART+R +E TQE +R+VGLSATLPNYKDVA
Sbjct: 606 ALTKLVRLIIIDEIHLLHEERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVAR 665
Query: 864 LLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQV-MNDIVYEKVMEHAGR-NQL 921
+R P +G +FD+S+RPV L Q +IGV + + + + MN + YE++ + +Q+
Sbjct: 666 FIR-APASGTHFFDSSYRPVPLTQNFIGVKDNQGIMVMKNNMNQLCYERLEKSLKEGHQV 724
Query: 922 LVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYG 981
++FVHSRK+T K+A + DM EK F + E ++VK+ E+R L +G
Sbjct: 725 MIFVHSRKDTVKSAEILSDMAKEK----HFRFSNEEPSFGAKKEFEKVKSKEIRSLFQHG 780
Query: 982 FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHI 1041
++HHAG+ R DR +V E FA+ I
Sbjct: 781 ISVHHAGLLRSDRNVV-----------------------------------EKYFANGTI 805
Query: 1042 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101
+VLV TATLAWGVNLPAHTVIIKGTQ+YN + G +++LG DV+Q+ GRAGRPQ+DT GE
Sbjct: 806 KVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFDTSGE 865
Query: 1102 GVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLY 1161
G L+T+ +L +YLSL++ +P+ES+ I+ L D LNAEIVLGTV N+ +AV WL YTYL+
Sbjct: 866 GFLLTSKDKLDHYLSLMSSSMPIESKFITNLEDHLNAEIVLGTVSNVNEAVNWLSYTYLF 925
Query: 1162 IRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGR 1221
IRML+ P +YGI +DP LE + ++I AA LE+ + ++D +S ++ +TELGR
Sbjct: 926 IRMLQNPLVYGIPSSQRSKDPQLEEFKREIIIRAAKKLEQCKMTRFDEQSENLGMTELGR 985
Query: 1222 IASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPI 1281
IASHYY H ++ T+N++L L + ++ + S S EF +IT+REEE EL KL E
Sbjct: 986 IASHYYIKHPSIETFNEMLNDQLGQDQVLNILSNSSEFENITLREEESTELDKLAENQCY 1045
Query: 1282 PIKESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQ 1341
+ + + +KV LLQA+ S+ ++GF+L+SD + Q+++R++R +FEI L +GW
Sbjct: 1046 -YELTVLDSHSKVKCLLQAFFSRANIDGFSLVSDSNYTVQNSSRILRGLFEISLKKGWCT 1104
Query: 1342 LADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIR 1401
++ L LCKMVD ++W SPLRQ + + + I+KIE++++ ER+ D+ EIGEL
Sbjct: 1105 VSKTILDLCKMVDHQLWHFESPLRQAKVLSLDTIRKIEERDWTPERICDM---EIGELSF 1161
Query: 1402 V---PKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWI 1458
V + KT K QFP+L+ +QPIT + +R+ +T+ P F W++K+HG S+ FWI
Sbjct: 1162 VLGNQLIAKTTRKIAQQFPQLDFEIQVQPITANIIRINMTLIPMFSWNDKMHGDSQPFWI 1221
Query: 1459 LVEDVDSEAI 1468
V+D +S+ I
Sbjct: 1222 WVQDNESQYI 1231
Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 176/551 (31%), Positives = 293/551 (53%), Gaps = 47/551 (8%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
DEIHL+ + RGP+LE +++R + T ++R+VGLS + N D++ + I GLF
Sbjct: 1453 DEIHLIGELRGPILEVIVSRMKLISKQTGVNIRVVGLSTAMANAIDLSEWMGID-RVGLF 1511
Query: 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934
F S RPV +E G K R Q MN + + ++ + +L+FV SR++T T
Sbjct: 1512 NFRPSCRPVPIEVHIQGFQGKNYCPRMQTMNKPSFAAIATYSPKKPVLIFVSSRRQTRLT 1571
Query: 935 A-RAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVD 993
A I + ++ D L Q++++G ++ T A +VK+ LR L +G +HHAG+ D
Sbjct: 1572 ALDLISYLVVDNDPL-QWIQKG---FDIEPTLA-RVKDQHLRHTLSFGIGMHHAGLNDGD 1626
Query: 994 RTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWG 1053
RT +VE LF + IQ+L+ST+TLAWG
Sbjct: 1627 RT-----------------------------------IVESLFGENKIQILISTSTLAWG 1651
Query: 1054 VNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQY 1113
VNLPAH VIIKGT+ ++ + R+V+ DVLQM+GRAGRPQ+D +G+ +++ + + Q+
Sbjct: 1652 VNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQF 1711
Query: 1114 YLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGI 1173
Y L PVES + L D LNAEIV GT+Q+ + A+ +L T+ + R++ +P+ YG+
Sbjct: 1712 YKKFLYDPFPVESHLKDFLHDHLNAEIVSGTIQSKQGAINYLVNTFFFRRLVVSPSYYGL 1771
Query: 1174 SHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETM 1233
++++ + + +DL+ + LE+S I+ + + ++ +G+IAS YY ++T+
Sbjct: 1772 EDNSVEA---VNQYLSDLLDSTLADLEQSSCIEINEYDEIIPMS-MGKIASFYYLNYKTV 1827
Query: 1234 ATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAK 1293
++ +K L RV S + E+ VR E++ Q+L E PI I D K
Sbjct: 1828 QNFSDNIKRDSDIKTLLRVLSDAAEYSEFPVRHNEEILNQELNENLPIKIGNYEDS-HTK 1886
Query: 1294 VNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMV 1353
V++LLQA+ + L +D R+++A+ ++ G+ A + + L +M+
Sbjct: 1887 VHLLLQAHFQRCPLPITDFTTDTKSALDQGIRILQAMIDVSFEYGYFATAIQVIRLLQML 1946
Query: 1354 DRRMWQSMSPL 1364
+ W S L
Sbjct: 1947 VQGRWDYDSSL 1957
Score = 173 bits (439), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 151/288 (52%), Gaps = 60/288 (20%)
Query: 428 RCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPI-DKLPRYVQHAFEDFKTLNRIQ 486
+ LP G+ R ++ + EV VP KP +E L+ I + + + AF K LNRIQ
Sbjct: 428 KIALPKGTVRTEKTTHTEVMVPYSLAKPFADNEKLIEIGESIAEISRAAFGSIKKLNRIQ 487
Query: 487 SRLCKSALESDENLLLCAPTGAGKTNVALLCMLQE------------------------- 521
SR+ +SA +S+EN+L+ APTGAGKTN+ALL +L E
Sbjct: 488 SRVFESAYKSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLK 547
Query: 522 -------------------IGKHINADGTINADEFK---IIYVAPMR----------SLV 549
+ K + D + E K II P + +
Sbjct: 548 ALASEMVEKFSNSLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVAL 607
Query: 550 QEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLL 609
++V DEIHLLH+ERGPVLE ++ART+R +E TQE +R+VGLSATLPNYKDVA +
Sbjct: 608 TKLVRLIIIDEIHLLHEERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFI 667
Query: 610 RIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQ-VMNDIVYEKV 656
R P +G +FD+S+RPV L Q +IGV + + + + MN + YE++
Sbjct: 668 R-APASGTHFFDSSYRPVPLTQNFIGVKDNQGIMVMKNNMNQLCYERL 714
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 69/113 (61%), Gaps = 5/113 (4%)
Query: 665 LLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRY--ATDDH 722
+ + +R+ +T+ P F W++K+HG S+ FWI V+D +S+ + H EYF+L + T+
Sbjct: 1191 ITANIIRINMTLIPMFSWNDKMHGDSQPFWIWVQDNESQYIFHSEYFMLTKKIYNQTEPI 1250
Query: 723 VVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFR---LPRGAGKTNVALL 772
+ +P+ P+P Q+FL +SDRW+G+E I +SFR LP+ N LL
Sbjct: 1251 TLTCIIPLPNPMPSQFFLHYISDRWLGSEGIREISFRHLVLPQQDRVVNTELL 1303
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 46/254 (18%)
Query: 1466 EAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTE- 1524
+ IR++QA +DV G+ + A+ + + QM+ Q W DS L LPH N D +
Sbjct: 1915 QGIRILQAMIDVSFEYGYFATAIQVIRLLQMLVQGRWDYDSSLMTLPHINKDFADFLSSN 1974
Query: 1525 ------KGVETVFDIMELEDDD---RLRLLQLSESQLADVARFCNRYPNIELSYEV---- 1571
+ + + D++++ D L + LS+SQ+ + + P +++ Y +
Sbjct: 1975 LILSNGEQISNLSDMLKIPRDKIHLSLTNIGLSDSQIKETLNVIDHLPKVKIEYFINTNN 2034
Query: 1572 --------------------------LNKDRISSGSSVNVVVNLDREDE--VTGPVIAPF 1603
NK + SG N+ + + RE++ G AP
Sbjct: 2035 NSNNNDDNNNENNNNNNKKNNNNNNNNNKSIVYSGQEFNIKIKVTRENKKFSNGHAFAPL 2094
Query: 1604 YPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIKLDFVAPNPGHHS---YALYFMSDA 1660
Y + ++EGW +V+ D K ++ KR+ + +F P S Y + SD
Sbjct: 2095 YSKDKDEGWIMVLTDEK-EQMIGFKRVPQMISNSVTANFKIPKAPFQSSTNYNVKLYSDT 2153
Query: 1661 YLGCDQEYKFSIDV 1674
Y+G D + F + +
Sbjct: 2154 YMGLDYFHTFQVPI 2167
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 100/242 (41%), Gaps = 58/242 (23%)
Query: 479 FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCML------------------- 519
F N IQ+++ + ++ N+LL +PTG+GKT A L M
Sbjct: 1324 FSHFNPIQTQVFHTLYYTNNNVLLGSPTGSGKTICAELAMFKVFRDEPHMKVVYIAPLKA 1383
Query: 520 --------------QEIGKHI---------NADGTINADEFKIIYVAP-----------M 545
+++GK + N NAD I+ P
Sbjct: 1384 LVRERMNDWKVKFQEKLGKKLVELTGDYTPNMIALQNAD---IVTTTPEKWDGISRNWKN 1440
Query: 546 RSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDV 605
RS V V DEIHL+ + RGP+LE +++R + T ++R+VGLS + N D+
Sbjct: 1441 RSYVTS-VSLLIIDEIHLIGELRGPILEVIVSRMKLISKQTGVNIRVVGLSTAMANAIDL 1499
Query: 606 ATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQL 665
+ + I GLF F S RPV +E G K R Q MN + + ++ + +
Sbjct: 1500 SEWMGID-RVGLFNFRPSCRPVPIEVHIQGFQGKNYCPRMQTMNKPSFAAIATYSPKKPV 1558
Query: 666 LV 667
L+
Sbjct: 1559 LI 1560
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 37/210 (17%), Positives = 89/210 (42%), Gaps = 31/210 (14%)
Query: 1469 RLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEK--G 1526
R+++ ++ GW + + +++ +M+ +W +S L+Q + D I++ E+
Sbjct: 1088 RILRGLFEISLKKGWCTVSKTILDLCKMVDHQLWHFESPLRQAKVLSLDTIRKIEERDWT 1147
Query: 1527 VETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVV 1586
E + D ME+ + + QL +A+ ++P ++ +V +
Sbjct: 1148 PERICD-MEIGELSFVLGNQLIAKTTRKIAQ---QFPQLDFEIQV-----------QPIT 1192
Query: 1587 VNLDREDEVTGPVIAPFYPQKREEG----WWVVIGDPKTNSLLSIKRLTLQQKAKIKLDF 1642
N+ R + +I F + G +W+ + D ++ + + L +K + +
Sbjct: 1193 ANIIR---INMTLIPMFSWNDKMHGDSQPFWIWVQDNESQYIFHSEYFMLTKKIYNQTEP 1249
Query: 1643 VA-------PNPGHHSYALYFMSDAYLGCD 1665
+ PNP + L+++SD +LG +
Sbjct: 1250 ITLTCIIPLPNPMPSQFFLHYISDRWLGSE 1279
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
GN=ascc3 PE=3 SV=2
Length = 1534
Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust.
Identities = 295/763 (38%), Positives = 439/763 (57%), Gaps = 132/763 (17%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL---------------- 804
P GAGKTN+A+L +L EI +H+ G I D+FKI+YVAPM++L
Sbjct: 97 PTGAGKTNIAMLTILHEIRQHLQPGGVIRKDQFKIVYVAPMKALAAEMTNYFSKRLEPLG 156
Query: 805 --VQEMVGNF----GK------------------------------------DEIHLLHD 822
V+E+ G+ G+ DE+HLLH+
Sbjct: 157 IAVKELTGDMQLTKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQVVRLLILDEVHLLHE 216
Query: 823 ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRP 882
+RGPVLE+L+ART+R +E+TQ +R++GLSATLPNY DVAT L + P GLFYFD+ FRP
Sbjct: 217 DRGPVLESLVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPFIGLFYFDSRFRP 276
Query: 883 VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEH--AGRNQLLVFVHSRKETGKTARAIRD 940
V L Q ++G+ +++ M ++ YEKV++ AG +Q++VFVH+R T +TA ++ +
Sbjct: 277 VPLGQSFVGIKTTNKVQQLHDMEEVCYEKVLKQIKAG-HQVMVFVHARNSTVRTAMSLIE 335
Query: 941 MCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDL 1000
M + L F + A + + +N ++R++ P GF IHHAGM R DR+L+
Sbjct: 336 MAKNRGELSFFQVDQGADYGQCEKQIQRSRNKQMREMFPDGFGIHHAGMLRQDRSLM--- 392
Query: 1001 FADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHT 1060
E +F+ +++VLV TATLAWGVNLPAH
Sbjct: 393 --------------------------------ESMFSRGYLKVLVCTATLAWGVNLPAHA 420
Query: 1061 VIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNH 1120
VIIKGT IY+ ++G V+LG LDV+Q+ GRAGRPQ+D GEG +IT H +L +YL+LL
Sbjct: 421 VIIKGTNIYDAKRGTLVDLGILDVMQIFGRAGRPQFDKYGEGTIITTHDKLSHYLTLLTQ 480
Query: 1121 QLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKE 1180
Q P+ESQ L D LNAEI LGTV N+ +AV WL YTYLY+RM P YGI+H A +
Sbjct: 481 QNPIESQFQQSLADNLNAEIALGTVTNVDEAVRWLSYTYLYVRMRANPLAYGINHKAYQM 540
Query: 1181 DPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLL 1240
DP LE +R +L+ + L+++ +I++D ++G+ T+LGR ASH+Y + T+ ++N+L
Sbjct: 541 DPQLELYRKELVVESGRKLDKARMIRFDERTGYFASTDLGRTASHFYIKYNTIESFNELF 600
Query: 1241 KPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKVNILLQA 1300
+E ++ + S + EF I VR +E E D S+ V IL +
Sbjct: 601 NAQNTEADVLSIVSKAEEFEQIKVRVQE----------------EDADGKSS-VQILCGS 643
Query: 1301 YISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQS 1360
+ + +AAR+MRA+FE+ L + W + + L+LCK++D+R+W
Sbjct: 644 HHT------------------NAARIMRALFEMALRKRWPAMTYRLLNLCKVMDKRLWGW 685
Query: 1361 MSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLE 1420
PLRQF +P + ++E KN ++L D+G +EIG ++ +G + + VHQ P +
Sbjct: 686 AHPLRQFNTLPASALARMEDKNLTIDKLRDMGKDEIGHMLHHVNIGLKVKQCVHQIPAIL 745
Query: 1421 LATHIQPITRSTLRVELTISPDFQWDEKLHGG-SEGFWILVED 1462
L + IQPITR+ LRV L+I+PDF+W++++HG E +W+ VED
Sbjct: 746 LESSIQPITRTVLRVRLSITPDFRWNDQVHGSVGEPWWLWVED 788
Score = 254 bits (648), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 159/458 (34%), Positives = 244/458 (53%), Gaps = 51/458 (11%)
Query: 802 RSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDV 861
RS VQ+ V DEIHLL ++RGPVLE +++RT T + VR+VGLS L N +D+
Sbjct: 1003 RSYVQK-VAILIIDEIHLLGEDRGPVLEVIVSRTNFISSHTSKTVRVVGLSTALANARDL 1061
Query: 862 ATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQL 921
A L I + GLF F S RPV LE G + R MN V++ + H+ +
Sbjct: 1062 ADWLGIG-QVGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMATMNKPVFQAIRTHSPAKPV 1120
Query: 922 LVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASM-EVLRTEADQVKNGELRDLLPY 980
L+FV SR++T TA + +D Q+L + M +++ T ++ L+ L +
Sbjct: 1121 LIFVSSRRQTRLTALDLIAFLATEDDPKQWLHQDEREMTDIIAT----IRESNLKLTLAF 1176
Query: 981 GFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRH 1040
G +HHAG+ DR V E+LF +
Sbjct: 1177 GIGMHHAGLHERDRKTV-----------------------------------EELFVNCK 1201
Query: 1041 IQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100
IQVL++T+TLAWGVN PAH VI+KGT+ Y+ + R+V+ DVLQM+GRAGRPQ+D +G
Sbjct: 1202 IQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQG 1261
Query: 1101 EGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYL 1160
+ V++ + + +Y L PVES ++S L D LNAEI GTV + +DA+ ++ +TY
Sbjct: 1262 KAVILVHDIKKDFYKKFLYEPFPVESSLLSVLSDHLNAEIAAGTVTSKQDAMDYITWTYF 1321
Query: 1161 YIRMLRAPNLYG---ISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVT 1217
+ R++ P+ Y ISH+ + + + ++L+ + LE S ++ + ++
Sbjct: 1322 FRRLVMNPSYYNLDDISHETINK------YLSNLVERSLRDLECSYCMEIQQDEQTIEPL 1375
Query: 1218 ELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSL 1255
GRI+S+YY H+T+ + + LKP L EL + SL
Sbjct: 1376 TYGRISSYYYLKHQTIRMFKERLKPELPVHELLAILSL 1413
Score = 220 bits (561), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 180/312 (57%), Gaps = 67/312 (21%)
Query: 431 LPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNRIQSRLC 490
LP+G R K YEEV +P +P P+G +E V + +L Q F+ K LNRIQS +
Sbjct: 23 LPEGIRRDNNKMYEEVEIPPNEPMPIGFEEKAVFVSELDEIGQLVFKGMKRLNRIQSIVF 82
Query: 491 KSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL-- 548
++A ++ENLL+CAPTGAGKTN+A+L +L EI +H+ G I D+FKI+YVAPM++L
Sbjct: 83 ETAYNTNENLLICAPTGAGKTNIAMLTILHEIRQHLQPGGVIRKDQFKIVYVAPMKALAA 142
Query: 549 ----------------VQEMVGNF----GK------------------------------ 558
V+E+ G+ G+
Sbjct: 143 EMTNYFSKRLEPLGIAVKELTGDMQLTKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQV 202
Query: 559 ------DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIK 612
DE+HLLH++RGPVLE+L+ART+R +E+TQ +R++GLSATLPNY DVAT L +
Sbjct: 203 VRLLILDEVHLLHEDRGPVLESLVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVN 262
Query: 613 PETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEH--AGRNQLLV--- 667
P GLFYFD+ FRPV L Q ++G+ +++ M ++ YEKV++ AG +Q++V
Sbjct: 263 PFIGLFYFDSRFRPVPLGQSFVGIKTTNKVQQLHDMEEVCYEKVLKQIKAG-HQVMVFVH 321
Query: 668 ---STLRVELTI 676
ST+R +++
Sbjct: 322 ARNSTVRTAMSL 333
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 68/95 (71%), Gaps = 3/95 (3%)
Query: 668 STLRVELTISPDFQWDEKLHGG-SEGFWILVEDVDSEVVLHHEYFLLKSR--YATDDHVV 724
+ LRV L+I+PDF+W++++HG E +W+ VED ++ + H EYFLL+ + + + V
Sbjct: 756 TVLRVRLSITPDFRWNDQVHGSVGEPWWLWVEDPINDHIYHSEYFLLQKKQVVSGEPQQV 815
Query: 725 KFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
F +P+FEP+P QY++R VSDRW+G+E + ++F+
Sbjct: 816 VFTIPIFEPMPSQYYIRAVSDRWLGSEAVCIINFQ 850
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 109/255 (42%), Gaps = 52/255 (20%)
Query: 463 VPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCML--- 519
+PI L + F N IQ+++ + +D N+LL APTG+GKT A + +
Sbjct: 870 LPITALGNREYESLYKFTHYNPIQTQIFHTLYHTDTNVLLGAPTGSGKTIAAEMAIFRVF 929
Query: 520 ------------------------------QEIGKHINADGTINADEFKIIYVAPM---- 545
+++G+ + N + + I A +
Sbjct: 930 NMYPTSKVVYIAPLKALVRERIEDWKIRIEEKLGRKVVELTGDNTPDMRAIAQADLIVTT 989
Query: 546 -------------RSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRL 592
RS VQ+ V DEIHLL ++RGPVLE +++RT T + VR+
Sbjct: 990 PEKWDGVSRSWQNRSYVQK-VAILIIDEIHLLGEDRGPVLEVIVSRTNFISSHTSKTVRV 1048
Query: 593 VGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIV 652
VGLS L N +D+A L I + GLF F S RPV LE G + R MN V
Sbjct: 1049 VGLSTALANARDLADWLGIG-QVGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMATMNKPV 1107
Query: 653 YEKVMEHAGRNQLLV 667
++ + H+ +L+
Sbjct: 1108 FQAIRTHSPAKPVLI 1122
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 1467 AIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNAD---IIKRCT 1523
AIR+ QA +DV+++ GWL A++ + QMI QA W DS L LPH + +R +
Sbjct: 1429 AIRICQAMLDVVANEGWLVSALSLCNLVQMIIQARWLHDSSLLTLPHIQKQELYVFRRWS 1488
Query: 1524 EKGV 1527
+GV
Sbjct: 1489 SRGV 1492
Score = 37.4 bits (85), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 42/221 (19%), Positives = 88/221 (39%), Gaps = 18/221 (8%)
Query: 1452 GSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQL 1511
G IL + A R+++A ++ W + + + +++ + +W L+Q
Sbjct: 633 GKSSVQILCGSHHTNAARIMRALFEMALRKRWPAMTYRLLNLCKVMDKRLWGWAHPLRQF 692
Query: 1512 PHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEV 1571
A + R +K + T+ + ++ D+ +L L V + ++ P I L +
Sbjct: 693 NTLPASALARMEDKNL-TIDKLRDMGKDEIGHMLHHVNIGL-KVKQCVHQIPAILLESSI 750
Query: 1572 LNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLT 1631
R +++ + D+V G V P WW+ + DP + + +
Sbjct: 751 QPITRTVLRVRLSITPDFRWNDQVHGSVGEP---------WWLWVEDPINDHIYHSEYFL 801
Query: 1632 LQQKAKI-----KLDFVAP--NPGHHSYALYFMSDAYLGCD 1665
LQ+K + ++ F P P Y + +SD +LG +
Sbjct: 802 LQKKQVVSGEPQQVVFTIPIFEPMPSQYYIRAVSDRWLGSE 842
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 536 bits (1380), Expect = e-151, Method: Compositional matrix adjust.
Identities = 279/661 (42%), Positives = 409/661 (61%), Gaps = 60/661 (9%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
DE+H+LHDERG V+E+L+ART R +E +Q+ +R+VGLSATLPNY DVA L + GLF
Sbjct: 421 DEVHMLHDERGAVIESLVARTQRLVETSQQMIRIVGLSATLPNYLDVADFLGVNRYKGLF 480
Query: 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGR-NQLLVFVHSRKETGK 933
YF ++FRP +EQ +IG + + ++ ++KV++ +Q+++FVHSRKET
Sbjct: 481 YFSSAFRPCPIEQHFIGAKGSPKIVNSNI-DEACFDKVLKLIQEGHQVMIFVHSRKETIN 539
Query: 934 TARAIRDMCLEKDTLGQFLREGSASM---------EVLRTEADQVKNGELRDLLPYGFAI 984
+A+ +R+ QF EG A + + + + + KN EL++L Y I
Sbjct: 540 SAKKLRE---------QFFHEGEADLLDNSQHEKYSLAQRDVSKSKNKELKELFKYSMGI 590
Query: 985 HHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVL 1044
H+AGM R +DRH L E LF+ +++L
Sbjct: 591 HNAGMLR----------SDRH-------------------------LTERLFSMGILKIL 615
Query: 1045 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVL 1104
TATLAWGVNLPA+ V+IKGTQ+Y+P+KG +V+LG LDVLQ+ GRAGRPQ+++ +
Sbjct: 616 CCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYI 675
Query: 1105 ITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRM 1164
IT H +L +Y+S++ Q P+ES+ +L D LNAE+ LGTV N+ +AV+WLGYTYLYIRM
Sbjct: 676 ITTHDKLSHYISVVTQQSPIESRFTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRM 735
Query: 1165 LRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIAS 1224
R P +YGI++D L EDPLL R +L+ AA L + +I Y++K+G++ +LGRIAS
Sbjct: 736 RRNPLVYGIAYDELVEDPLLGSKRRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIAS 795
Query: 1225 HYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMER-APIPI 1283
+YY ++T++T N LLK +SE ++ + S EF I RE E EL+ LME +P +
Sbjct: 796 NYYINYQTVSTLNNLLKSKMSEADIIALLSQCSEFSQIKSRENEHRELESLMENSSPCQL 855
Query: 1284 KESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLA 1343
++S S KVN++LQ+YIS+ +E F L SD +V Q+A R+ RA+FEI + R WA A
Sbjct: 856 RDSISNTSGKVNVILQSYISRAHVEDFTLTSDTNYVAQNAGRITRALFEIAMSRTWAS-A 914
Query: 1344 DKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKK--NFPWERLYDLGPNEIGELIR 1401
LSL K +DRR W PL QF +P ++ K+E + + E L D+ E+G+LI
Sbjct: 915 FTILSLNKSIDRRQWSFEHPLLQF-DLPHDLAVKVENQCGSLSLEELSDMSTGELGDLIH 973
Query: 1402 VPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVE 1461
K+G T+ K++ + P L + + P+T++ LR+ L I+P+F WD + HG S+ FWI VE
Sbjct: 974 NRKMGPTVKKFISKLPLLNINVDLLPLTKNVLRLVLNITPNFNWDMRYHGNSQMFWIFVE 1033
Query: 1462 D 1462
D
Sbjct: 1034 D 1034
Score = 263 bits (672), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 196/673 (29%), Positives = 330/673 (49%), Gaps = 66/673 (9%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
DEIHLL +RGPVLE +++R T + VR++GLS + N D+A L I+ GLF
Sbjct: 1261 DEIHLLGSDRGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWLNIR--DGLF 1318
Query: 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934
F +S RPV LE G + R MN ++ + H+ +L+FV SR++T T
Sbjct: 1319 NFRHSVRPVPLEIYIDGFPGRAYCPRMMSMNKPAFQAIKTHSPTQPVLIFVSSRRQTRLT 1378
Query: 935 ARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDR 994
A+ + C +D +FL +E++ +E V++ L+ LP+G A+HHAG+T DR
Sbjct: 1379 AKDLIAFCGLEDNPRRFLYMDEEELEMIVSE---VEDKSLKLALPFGIALHHAGLTENDR 1435
Query: 995 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGV 1054
+ E+ LF + +Q+L++T+TLAWGV
Sbjct: 1436 KISEE-----------------------------------LFVNNKVQILIATSTLAWGV 1460
Query: 1055 NLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYY 1114
N PAH VI+KGT+ Y+ + G + ++ DVLQMLGRAGRPQ+D G + + +Y
Sbjct: 1461 NTPAHLVIVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIKKSFY 1520
Query: 1115 LSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGIS 1174
L+ PVES + L + LNAEI GT+ ++ A+ +L TY Y R+ + P YG
Sbjct: 1521 KHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFLTCTYFYRRVHQNPVYYGAD 1580
Query: 1175 HDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMA 1234
D K ++ + + L+ TA LE+S I Y T LGRI S+YY H T+
Sbjct: 1581 GDDQKS---IDTYLSKLVVTAFNELEKSACI-YRVNEETYAPTTLGRIVSYYYLFHTTIR 1636
Query: 1235 TYNQLLKPTLSEIEL-FRVFSLSGEFRHITVREEEKL---ELQKLMERAPIPIKESTDEP 1290
+ Q + +E +L ++ + + EF + +R E L E+ K ++ + + +
Sbjct: 1637 NFVQKITEN-AEFDLALQLLAEASEFDDLAIRHNEDLINIEINKSLKYSAACLNLPMVDA 1695
Query: 1291 SAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLC 1350
K IL QA++++LKL ++D V R++++ ++ G++ + + +SL
Sbjct: 1696 HVKAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRIIQSYIDVSAELGYSHVCLQYISLM 1755
Query: 1351 KMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRV----PKLG 1406
+ + Q+ P +R + EK+ + L N+ EL ++ P +
Sbjct: 1756 QCLK----QACYPSEIYRASLPGLNASSEKE--ARDYLNKFAGNKTDELYQMLCNDPNVF 1809
Query: 1407 --KTIHKYVHQFPKLELATHIQPITRSTL---RVELTISPDFQWDEKLHGG--SEGFWIL 1459
+++ + +PK+ + + L R+ ++PDF L SEGF++L
Sbjct: 1810 DIESLVNSLISYPKMNIEVSQSSSDKLLLYLRRLNQPLNPDFYIFAPLFPKPQSEGFFVL 1869
Query: 1460 VEDVDSEAIRLIQ 1472
+ D +++ + I+
Sbjct: 1870 IIDSETQELFAIR 1882
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 14/166 (8%)
Query: 407 RQVLDLEDLQFSSGSHFMSN------KRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDE 460
+QV ++E G + N K+ LP GS R+ + YEE+ VP + P E
Sbjct: 197 QQVFEVEKYPHVYGDKRLGNTISVIGKKFALPAGSEREDYQKYEEIIVPHAQRAPQMQGE 256
Query: 461 TLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQ 520
L+ I + + F ++TLNRIQS + A +++EN+L+CAPTGAGKT+VALL MLQ
Sbjct: 257 KLLEISSMDILCRKTFLSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQ 316
Query: 521 EIGKHINADGT--------INADEFKIIYVAPMRSLVQEMVGNFGK 558
I ++ + ++ D+FKI+Y+APM++L E+V GK
Sbjct: 317 TISNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVVEKMGK 362
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 60/91 (65%)
Query: 668 STLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFF 727
+ LR+ L I+P+F WD + HG S+ FWI VED + +LHHE LL R + H++ F
Sbjct: 1003 NVLRLVLNITPNFNWDMRYHGNSQMFWIFVEDSNGLEILHHEQLLLNKRNVSTSHLLSFT 1062
Query: 728 VPVFEPLPPQYFLRIVSDRWIGAETILPVSF 758
+PV PLP Q ++ VSD+W+GAET+ PVS
Sbjct: 1063 IPVSNPLPSQLYIIAVSDKWLGAETVTPVSL 1093
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 60/77 (77%)
Query: 559 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 618
DE+H+LHDERG V+E+L+ART R +E +Q+ +R+VGLSATLPNY DVA L + GLF
Sbjct: 421 DEVHMLHDERGAVIESLVARTQRLVETSQQMIRIVGLSATLPNYLDVADFLGVNRYKGLF 480
Query: 619 YFDNSFRPVALEQQYIG 635
YF ++FRP +EQ +IG
Sbjct: 481 YFSSAFRPCPIEQHFIG 497
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 95/239 (39%), Gaps = 53/239 (22%)
Query: 479 FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKH------------- 525
F N +Q++ + +D N+ + APTG+GKT A L + + +
Sbjct: 1132 FSFFNAVQTQFFHTIYHTDTNIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKA 1191
Query: 526 ---------------------INADGTINAD-----EFKIIYVAP-----------MRSL 548
I G N D II P R
Sbjct: 1192 LVKERVKDWGHRLVEPMGISMIELTGDTNPDVKAVTNANIIITTPEKWDGITRSWKSRKY 1251
Query: 549 VQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATL 608
VQ+ V DEIHLL +RGPVLE +++R T + VR++GLS + N D+A
Sbjct: 1252 VQD-VSLIILDEIHLLGSDRGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANW 1310
Query: 609 LRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLV 667
L I+ GLF F +S RPV LE G + R MN ++ + H+ +L+
Sbjct: 1311 LNIR--DGLFNFRHSVRPVPLEIYIDGFPGRAYCPRMMSMNKPAFQAIKTHSPTQPVLI 1367
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 13/170 (7%)
Query: 1466 EAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEK 1525
+ IR+IQ+ +DV + G+ + + + Q + QA + + Y LP NA +EK
Sbjct: 1727 QVIRIIQSYIDVSAELGYSHVCLQYISLMQCLKQACYPSEIYRASLPGLNAS-----SEK 1781
Query: 1526 GVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNV 1585
+ D L + ++ + D+ N +SY +N + +S SS +
Sbjct: 1782 EARDYLNKFAGNKTDELYQMLCNDPNVFDIESLVNSL----ISYPKMNIE-VSQSSSDKL 1836
Query: 1586 VVNLDREDEVTGP---VIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTL 1632
++ L R ++ P + AP +P+ + EG++V+I D +T L +I+R +
Sbjct: 1837 LLYLRRLNQPLNPDFYIFAPLFPKPQSEGFFVLIIDSETQELFAIRRASF 1886
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 8/62 (12%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGT--------INADEFKIIYVAPMRSLVQEMVGNF 812
P GAGKT+VALL MLQ I ++ + ++ D+FKI+Y+APM++L E+V
Sbjct: 301 PTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVVEKM 360
Query: 813 GK 814
GK
Sbjct: 361 GK 362
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 486 bits (1252), Expect = e-136, Method: Compositional matrix adjust.
Identities = 286/792 (36%), Positives = 430/792 (54%), Gaps = 115/792 (14%)
Query: 753 ILPVSFRL--------PRGAGKTNVALLCMLQEIGKHINADGT----INADEFKIIYVA- 799
+ PV+++ P GAGKT++ALL ++ I + +G I D+FK+IYVA
Sbjct: 295 VYPVAYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAP 354
Query: 800 -----------------PMRSLVQEMVGNFGK---------------------------- 814
P V+E+ G+
Sbjct: 355 LKALAAEIVDKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGD 414
Query: 815 ------------DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVA 862
DE+HLLH++RG V+E L+ART+R +E++Q +R++GLSATLPN+ DVA
Sbjct: 415 NDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLRQVESSQSMIRIIGLSATLPNFMDVA 474
Query: 863 TLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRF-QVMNDIVYEKVMEHAGRN-Q 920
L + + G+FYFD SFRP LEQQ +G K ++ + ++ + Y+K+ E R Q
Sbjct: 475 DFLGVNRQIGMFYFDQSFRPKPLEQQLLGCRGKAGSRQSKENIDKVAYDKLSEMIQRGYQ 534
Query: 921 LLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKN--GELRDLL 978
++VFVHSRKET K+AR + + F +E + VKN +++++
Sbjct: 535 VMVFVHSRKETVKSARNFIKLAESNHEVDLF---APDPIEKDKYSRSLVKNRDKDMKEIF 591
Query: 979 PYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFAD 1038
+GF IHHAGM R DR L E +F D
Sbjct: 592 QFGFGIHHAGMARSDRNLT-----------------------------------EKMFKD 616
Query: 1039 RHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDT 1098
I+VL TATLAWGVNLPA VIIKGTQ+Y+ +KG +++LG DV+Q+ GR GRP + +
Sbjct: 617 GAIKVLCCTATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGS 676
Query: 1099 -KGEGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGY 1157
G G+L T++ L +Y+SL+ Q P+ES+ SKL D LNAEI LG+V N+ +A+ WLGY
Sbjct: 677 ANGTGILCTSNDRLDHYVSLITQQHPIESRFGSKLVDNLNAEISLGSVTNVDEAIEWLGY 736
Query: 1158 TYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVT 1217
TY+++RM + P YGI + + DP L R +I AA L +I +D S H
Sbjct: 737 TYMFVRMRKNPFTYGIDWEEIANDPQLYERRRKMIVVAARRLHALQMIVFDEVSMHFIAK 796
Query: 1218 ELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLM- 1276
+LGR++S +Y +E++ +NQ+ P +E ++ + S+S EF I REEE EL++L
Sbjct: 797 DLGRVSSDFYLLNESVEIFNQMCDPRATEADVLSMISMSSEFDGIKFREEESKELKRLSD 856
Query: 1277 ERAPIPIKESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLY 1336
E I D P K N+LLQAYISQ ++ AL SD +V Q++ R+ RA+F I +
Sbjct: 857 ESVECQIGSQLDTPQGKANVLLQAYISQTRIFDSALSSDSNYVAQNSVRICRALFLIGVN 916
Query: 1337 RGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEI 1396
R W + ++ L++CK +++R+W PL QF +PE II++I E L +L +E+
Sbjct: 917 RRWGKFSNVMLNICKSIEKRLWAFDHPLCQF-DLPENIIRRIRDTKPSMEHLLELEADEL 975
Query: 1397 GELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGF 1456
GEL+ K G ++K + +FPK+ + I PIT + +R+ + + PDF WD ++HG ++ F
Sbjct: 976 GELVHNKKAGSRLYKILSRFPKINIEAEIFPITTNVMRIHIALGPDFVWDSRIHGDAQFF 1035
Query: 1457 WILVEDVDSEAI 1468
W+ VE+ D I
Sbjct: 1036 WVFVEESDKSQI 1047
Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 179/606 (29%), Positives = 297/606 (49%), Gaps = 61/606 (10%)
Query: 802 RSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDV 861
R VQ+ V DEIHLL +RGP+LE +++R T++ VRL+G+S + N D+
Sbjct: 1254 RKFVQD-VSLIIMDEIHLLASDRGPILEMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDM 1312
Query: 862 ATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKAL-KRFQVMNDIVYEKVMEHAGRNQ 920
A L +K + GL+ F +S RPV L+ G + A + MN V+ + +H+
Sbjct: 1313 AGWLGVK-DHGLYNFPSSVRPVPLKMYIDGFPDNLAFCPLMKTMNKPVFMAIKQHSPDKP 1371
Query: 921 LLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPY 980
L+FV SR++T TA + +C +D +FL E L+ QV + L+ L +
Sbjct: 1372 ALIFVASRRQTRLTALDLIHLCGMEDNPRRFLNIDDE--EELQYYLSQVTDDTLKLSLQF 1429
Query: 981 GFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRH 1040
G +HHAG+ + DR++ +H LF
Sbjct: 1430 GIGLHHAGLVQKDRSI--------------------------SH---------QLFQKNK 1454
Query: 1041 IQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100
IQ+L++T+TLAWGVNLPAH VIIKGTQ ++ + + ++ D+LQM+GRAGRP YDT G
Sbjct: 1455 IQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTG 1514
Query: 1101 EGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYL 1160
++ T S+ +Y LN PVES + L D L AEI G++ N ++A+ +L +T+L
Sbjct: 1515 TAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHLGAEITSGSITNKQEALDFLSWTFL 1574
Query: 1161 YIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELG 1220
+ R P YGI D + H + LI + +L S + + T
Sbjct: 1575 FRRAHHNPTYYGIEDDTSTAG--VSEHLSSLIDSTLENLRESQCVLL--HGDDIVATPFL 1630
Query: 1221 RIASHYYCTHETMATYNQLLKPTLSEI---ELFRVFSLSGEFRHITVREEEKLELQKLME 1277
I+S+YY +H T+ QLLK E+ R SL+ E+ + VR E + +++ +
Sbjct: 1631 SISSYYYISHLTI---RQLLKQIHDHATFQEVLRWLSLAVEYNELPVRGGEIIMNEEMSQ 1687
Query: 1278 RAPIPIKES-TDE-------PSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRA 1329
++ ++ + TDE P K +LLQA++S++ L + D V V + R+++A
Sbjct: 1688 QSRYSVESTFTDEFELPMWDPHVKTFLLLQAHLSRVDLPIADYIQDTVSVLDQSLRILQA 1747
Query: 1330 IFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLY 1389
++ G+ + + + + + W P+ +P +++I+ F +
Sbjct: 1748 YIDVASELGYFHTVLTMIKMMQCIKQGYWYEDDPV---SVLPGLQLRRIKDYTFSEQGFI 1804
Query: 1390 DLGPNE 1395
++ P +
Sbjct: 1805 EMTPQQ 1810
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 155/310 (50%), Gaps = 66/310 (21%)
Query: 418 SSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPD--ETLVPIDKLPRYVQHA 475
S+ + + ++ LP G+ R +EE+ +PA L+ I L + +
Sbjct: 223 STTAMAFAGQKFTLPVGTTRMSYNTHEEIIIPAADQASNKNYLYTKLLKISDLDHFCKTV 282
Query: 476 FEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGT---- 531
F ++TLN+IQS + A +++EN+L+CAPTGAGKT++ALL ++ I + +G
Sbjct: 283 FP-YETLNQIQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEID 341
Query: 532 INADEFKIIYVA------------------PMRSLVQEMVGNFGK--------------- 558
I D+FK+IYVA P V+E+ G+
Sbjct: 342 IQYDDFKVIYVAPLKALAAEIVDKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTP 401
Query: 559 -------------------------DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLV 593
DE+HLLH++RG V+E L+ART+R +E++Q +R++
Sbjct: 402 EKWDVVTRKANGDNDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLRQVESSQSMIRII 461
Query: 594 GLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRF-QVMNDIV 652
GLSATLPN+ DVA L + + G+FYFD SFRP LEQQ +G K ++ + ++ +
Sbjct: 462 GLSATLPNFMDVADFLGVNRQIGMFYFDQSFRPKPLEQQLLGCRGKAGSRQSKENIDKVA 521
Query: 653 YEKVMEHAGR 662
Y+K+ E R
Sbjct: 522 YDKLSEMIQR 531
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 61/95 (64%)
Query: 665 LLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVV 724
+ + +R+ + + PDF WD ++HG ++ FW+ VE+ D +LH E F+L R + H +
Sbjct: 1007 ITTNVMRIHIALGPDFVWDSRIHGDAQFFWVFVEESDKSQILHFEKFILNRRQLNNQHEM 1066
Query: 725 KFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
F +P+ +PLPPQ +++VSD WIG E+ +SF+
Sbjct: 1067 DFMIPLSDPLPPQVVVKVVSDTWIGCESTHAISFQ 1101
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 112/272 (41%), Gaps = 60/272 (22%)
Query: 440 RKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDEN 499
R E + LK +P+ P L + + FK N +Q+ + ++EN
Sbjct: 1105 RPFNETLQTKLLKLRPL-------PTSALQNPLIESIYPFKYFNPMQTMTFYTLYNTNEN 1157
Query: 500 LLLCAPTGAGKTNVALLCMLQEI----GKHINADGTINA------DEFK----------- 538
+ +PTG+GKT VA L + GK I + A D+++
Sbjct: 1158 AFVGSPTGSGKTIVAELAIWHAFKTFPGKKIVYIAPMKALVRERVDDWRKKITPVTGDKV 1217
Query: 539 ------------------IIYVAP-----------MRSLVQEMVGNFGKDEIHLLHDERG 569
I+ P R VQ+ V DEIHLL +RG
Sbjct: 1218 VELTGDSLPDPKDVHDATIVITTPEKFDGISRNWQTRKFVQD-VSLIIMDEIHLLASDRG 1276
Query: 570 PVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVAL 629
P+LE +++R T++ VRL+G+S + N D+A L +K + GL+ F +S RPV L
Sbjct: 1277 PILEMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAGWLGVK-DHGLYNFPSSVRPVPL 1335
Query: 630 EQQYIGVTEKKAL-KRFQVMNDIVYEKVMEHA 660
+ G + A + MN V+ + +H+
Sbjct: 1336 KMYIDGFPDNLAFCPLMKTMNKPVFMAIKQHS 1367
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 31/205 (15%)
Query: 1466 EAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCT-- 1523
+++R++QA +DV S G+ + +++ Q I Q W +D + LP IK T
Sbjct: 1740 QSLRILQAYIDVASELGYFHTVLTMIKMMQCIKQGYWYEDDPVSVLPGLQLRRIKDYTFS 1799
Query: 1524 EKGV------ETVFDIMELEDDDRL---RLLQL----------SESQLADVARFCNRYPN 1564
E+G + ++ LE+ R +LL + SE C R P
Sbjct: 1800 EQGFIEMTPQQKKKKLLTLEEIGRFGYKKLLNVFDQLTFGMTESEDTKKRFVSVCQRLPV 1859
Query: 1565 IE-LSYEVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNS 1623
+E + +E + + + S ++ + E V +P+ ++E W+++ K +
Sbjct: 1860 LEGMKFEEQENNEVLTFYSKHLSSKHNNGFE----VYCDKFPKIQKELWFLI--GHKGDE 1913
Query: 1624 LLSIKRLTLQQKAK---IKLDFVAP 1645
LL IKR +Q K I D P
Sbjct: 1914 LLMIKRCQPKQMNKEVIIHCDLFIP 1938
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 207/698 (29%), Positives = 334/698 (47%), Gaps = 88/698 (12%)
Query: 803 SLVQEMVGNFGKDEIHLLHDE-RGPVLEALIAR--TIRNIEATQED------VRLVGLSA 853
+LVQ +V F DE+H+L +E RG LE +++R TI ++ ED +R V +SA
Sbjct: 269 TLVQ-LVRLFLIDEVHILKEENRGATLEVVVSRMKTIYSLSHLSEDRKAFIPMRFVAVSA 327
Query: 854 TLPNYKDVATLLRIKPETGL-FYFDNSFRPVALEQQYIGV---TEKKALKRFQVMNDIVY 909
T+PN +D+A L + G+ D S RPV L + +G T++ K +N +
Sbjct: 328 TIPNVEDIADWLSDENSPGVCMKMDESSRPVKLRKVVLGFPCSTKQSEFKFDLTLNYKIA 387
Query: 910 EKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQV 969
+ ++ LVF +RK + A L KD +F+ + L+ A+ +
Sbjct: 388 NIIQTYSDGRPTLVFCSTRKGVQQAASI-----LTKD--AKFVM-SIEHKQRLQKCANSI 439
Query: 970 KNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDR 1029
K+ +LRD+L YG HHAG+ DR ++E+ F
Sbjct: 440 KDSKLRDVLQYGVGYHHAGVDISDRKVIENSF---------------------------- 471
Query: 1030 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLG 1089
L+ DL VL +T+TLA GVNLPAH VI+K T Y G + E D+LQM+G
Sbjct: 472 -LIGDL------PVLFTTSTLAMGVNLPAHLVIVKSTMHY--VSGMFQEYSETDILQMIG 522
Query: 1090 RAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLK 1149
RAGRPQ+D+ V++T S + Y+ +L+ +ES + L + LNAEI L T+ ++K
Sbjct: 523 RAGRPQFDSTATAVIMTRLSTKEKYVHMLDGADTIESSLHKHLVEHLNAEIALHTITDVK 582
Query: 1150 DAVTWLGYTYLYIRMLRAPNLYGISHDALK---EDPLLECHRADLIHTAALHLERSGLIK 1206
A+ W+ T+LYIR L+ P YG S K E L E +L ++L GLIK
Sbjct: 583 VALEWIRSTFLYIRALKNPAYYGFSEGLDKIGIEAKLQELCLKNLNDLSSL-----GLIK 637
Query: 1207 YDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVRE 1266
D + + + TE G++ + YY T ++ ++ T + EL + S EF + +R
Sbjct: 638 MDEEI-NFKPTETGKLMALYYIAFNTAKLFHT-IRGTETLAELVSLISSCSEFSDVQLRA 695
Query: 1267 EEKLELQKLME-------RAPIPIKESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFV 1319
E+ L L + R P+ K T E KVN L+QA++ + ++ F+L D+ +
Sbjct: 696 NERRVLNTLNKDKNRVTIRYPMEGKIKTKE--MKVNCLIQAHLGCILVQDFSLTQDISKI 753
Query: 1320 TQSAARLMRAIFE-IVLYRGWAQLADKALSLCKMVDRRMWQSMSPL-RQFRKIPEEIIKK 1377
+ RL + + E + L AL L K ++W++ S + +Q KI +
Sbjct: 754 FRHGTRLAKCLSEFLALQENKFSAFLNALILTKCFKSKLWENSSHISKQLEKIGVTLANA 813
Query: 1378 IEKKNF-PWERLYDLGPNEIGELI--RVPKLGKTIHKYVHQFPKLELA-THIQPITRSTL 1433
+ ++++ D E+ ELI R P G I + V PK E+ + +T
Sbjct: 814 MVNAGLTTFKKIEDTNAREL-ELIVNRHPPFGNQIKESVAHLPKYEIKFQQLAKYRATTA 872
Query: 1434 RVELTI-SPDFQWDEKLHGGSEGFWIL--VEDVDSEAI 1468
V LT+ +F+ +K + +++ + D D++AI
Sbjct: 873 EVVLTVLLTNFKQLQKKRTAPDSHFVMLVIGDDDNQAI 910
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 79/245 (32%)
Query: 462 LVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKT---NVALLCM 518
+ P+ ++P+ + F++F N IQS+ + L SD N +LCAPTG+GKT +A++ +
Sbjct: 130 VTPVTEIPKQFRTVFKEFPYFNYIQSKALEHLLYSDRNFVLCAPTGSGKTVIFELAIIRL 189
Query: 519 LQEIGKHINADGTINADEFKIIYVAPMRSL------------------VQEMVGN----- 555
L ++ + KI+Y+AP+++L +E+ G+
Sbjct: 190 LMQV--------PMPWTNVKIVYMAPIKALCGQRYDDWKAKFGPVGLNCKELTGDTEMDD 241
Query: 556 -----------------------------------FGKDEIHLLHDE-RGPVLEALIAR- 578
F DE+H+L +E RG LE +++R
Sbjct: 242 LFEIQHAHIIMTTPEKWDSMTRKWKDNTLVQLVRLFLIDEVHILKEENRGATLEVVVSRM 301
Query: 579 -TIRNIEATQED------VRLVGLSATLPNYKDVATLLRIKPETGL-FYFDNSFRPVALE 630
TI ++ ED +R V +SAT+PN +D+A L + G+ D S RPV L
Sbjct: 302 KTIYSLSHLSEDRKAFIPMRFVAVSATIPNVEDIADWLSDENSPGVCMKMDESSRPVKLR 361
Query: 631 QQYIG 635
+ +G
Sbjct: 362 KVVLG 366
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=2
SV=2
Length = 1435
Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 220/721 (30%), Positives = 346/721 (47%), Gaps = 92/721 (12%)
Query: 803 SLVQEMVGNFGKDEIHLLHDE-RGPVLEALIAR--TIRNIEATQED------VRLVGLSA 853
SLVQ +V F DE+H++ DE RGP LE +++R T++++ T ++ +R V +SA
Sbjct: 400 SLVQ-LVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSA 458
Query: 854 TLPNYKDVATLLRI--KPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQ---VMNDIV 908
T+PN +D+A L +P L D S RPV L++ +G F+ +N +
Sbjct: 459 TIPNAEDIAEWLSDGERPAVCL-KMDESHRPVKLQKVVLGFPCSSNQTEFKFDLTLNYKI 517
Query: 909 YEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQ 968
+ ++ + LVF +RK + A L KD +F+ L+ A
Sbjct: 518 ASVIQMYSDQKPTLVFCATRKGVQQAASV-----LVKD--AKFIMTVEQKQR-LQKYAYS 569
Query: 969 VKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVD 1028
V++ +LRD+L G A HHAGM DR +VE F TV D
Sbjct: 570 VRDSKLRDILKDGAAYHHAGMELSDRKVVEGAF-----------------------TVGD 606
Query: 1029 RTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQML 1088
+ VL +T+TLA GVNLPAH V+IK T Y G + E D+LQM+
Sbjct: 607 ------------LPVLFTTSTLAMGVNLPAHLVVIKSTMHY--AGGLFEEYSETDILQMI 652
Query: 1089 GRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNL 1148
GRAGRPQ+DT V++T S Y+ +L + VES + L + LNAEIVL T+ ++
Sbjct: 653 GRAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDV 712
Query: 1149 KDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYD 1208
AV W+ T LYIR L+ P+ YG + K+ +E +L L LIK D
Sbjct: 713 NIAVEWIRSTLLYIRALKNPSHYGFASGLNKDG--IEAKLQELCLKNLNDLSSLDLIKMD 770
Query: 1209 RKSGHMQVTELGRIASHYYCTHETMATYNQLL-KPTLSEIELFRVFSLSGEFRHITVREE 1267
+ + + TE GR+ + YY T ET+ + + K TLS +L + + EF I +R
Sbjct: 771 -EGVNFKPTEAGRLMAWYYITFETVKKFYTISGKETLS--DLVTLIAGCKEFLDIQLRIN 827
Query: 1268 EKLELQKLME-------RAPIPIKESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVT 1320
EK L L + R P+ + T E KVN L+QA + + ++ FAL D +
Sbjct: 828 EKKTLNTLNKDPNRITIRFPMEGRIKTRE--MKVNCLIQAQLGCIPIQDFALTQDTAKIF 885
Query: 1321 QSAARLMRAIFEIVLY--RGWAQLADKALSLCKMVDRRMWQ-SMSPLRQFRKIPEEIIKK 1377
+ +R+ R + + V + +A L + +L L K ++W+ S+ +Q KI +
Sbjct: 886 RHGSRITRWLSDFVAAQEKKFAVLLN-SLILAKCFRCKLWENSLHVSKQLEKIGITLSNA 944
Query: 1378 IEKKNF-PWERLYDLGPNEIGELI--RVPKLGKTIHKYVHQFPKLELATHIQPITR---S 1431
I ++++ + E+ ELI R P G I + V PK EL ++ ITR +
Sbjct: 945 IVNAGLTSFKKIEETDAREL-ELILNRHPPFGTQIKETVMYLPKYELK--VEQITRYSDT 1001
Query: 1432 TLRVELT-ISPDFQWDEKLHGGSEGFWI--LVEDVDSEAIRLIQACVDVLSSNGWLSPAV 1488
T + +T I +F+ + S+ ++ ++ D D++ + L + VL G + +
Sbjct: 1002 TAEILVTVILRNFEQLQTKRTASDSHYVTLIIGDADNQVVYLHKITDSVLLKAGSWAKKI 1061
Query: 1489 A 1489
A
Sbjct: 1062 A 1062
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 69/241 (28%)
Query: 461 TLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNV---ALLC 517
+L + ++P + F++F N IQS+ L +D N ++CAPTG+GKT V A+
Sbjct: 260 SLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITR 319
Query: 518 MLQEI------------------------------------GKHINADGTINADEFKI-- 539
+L E+ K + D T+ D F+I
Sbjct: 320 LLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGD-TVMDDLFEIQH 378
Query: 540 ---IYVAPMR-----------SLVQEMVGNFGKDEIHLLHDE-RGPVLEALIAR--TIRN 582
I P + SLVQ +V F DE+H++ DE RGP LE +++R T+++
Sbjct: 379 AHIIMTTPEKWDSMTRKWRDNSLVQ-LVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQS 437
Query: 583 IEATQED------VRLVGLSATLPNYKDVATLLRI--KPETGLFYFDNSFRPVALEQQYI 634
+ T ++ +R V +SAT+PN +D+A L +P L D S RPV L++ +
Sbjct: 438 VSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCL-KMDESHRPVKLQKVVL 496
Query: 635 G 635
G
Sbjct: 497 G 497
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 177 bits (448), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 161/583 (27%), Positives = 268/583 (45%), Gaps = 91/583 (15%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPE--TG 872
DEIH + ++RG LE ++ R + +++R V LSAT+PN +D+A L+ E
Sbjct: 268 DEIHTIKEKRGASLEVILTR----MNTMCQNIRFVALSATVPNIEDLALWLKTNNELPAN 323
Query: 873 LFYFDNSFRPVALEQQYIGVT--EKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKE 930
+ FD S+R V L + G + K ++ + N + E + +HA +L+F +R
Sbjct: 324 ILSFDESYRQVQLTKFVYGYSFNCKNDFQKDAIYNSKLIEIIEKHADNRPVLIFCPTRAS 383
Query: 931 TGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMT 990
T TA+ + L + S +D++ L + + G A HHAG++
Sbjct: 384 TISTAKFL---------LNNHIFSKSKK-RCNHNPSDKI----LNECMQQGIAFHHAGIS 429
Query: 991 RVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATL 1050
+ DRT VE F I +L ST+TL
Sbjct: 430 -----------------------------------LEDRTAVEKEFLAGSINILCSTSTL 454
Query: 1051 AWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110
A GVNLPA+ VIIKGT+ +N + + E LDVLQM+GRAGRPQ++T G V++T+
Sbjct: 455 AVGVNLPAYLVIIKGTKSWNSSEIQ--EYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKM 512
Query: 1111 LQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNL 1170
Q Y +L++ +ES + L + L AE L TV +++ AV WL T+ Y+R + P
Sbjct: 513 KQTYENLIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKNPAA 572
Query: 1171 YG-----ISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASH 1225
Y +S ++ ED + L+ T L + +I D +G + T G +
Sbjct: 573 YQEVNRYVSFHSV-EDSQINQFCQYLLDT----LVKVKII--DISNGEYKSTAYGNAMTR 625
Query: 1226 YYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEK-----LELQKLMERAP 1280
+Y + E+M + K LS + + + S EF + VR EK + L L++
Sbjct: 626 HYISFESMKQFIN-AKKFLSLQGILNLLATSEEFSVMRVRHNEKKLFKEINLSPLLKYPF 684
Query: 1281 IPIKEST---DEPSAKVNILLQAYISQLKLEGF--------ALMSDMVFVTQSAARLMRA 1329
+ K+ + D S KV++L+Q + L+ + L+ D V + RL++
Sbjct: 685 LTEKKQSQIIDRVSQKVSLLIQYELGGLEFPSYEGASKLHQTLVQDKFLVFRHCFRLLKC 744
Query: 1330 IFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSP--LRQFRKI 1370
+ + + + L L + ++ W++ +P LRQ + I
Sbjct: 745 MVDTFIEKSDGTSLKNTLFLLRSLNGHCWEN-TPMVLRQLKTI 786
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 126/317 (39%), Gaps = 69/317 (21%)
Query: 468 LPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKT---NVALLCMLQEIGK 524
LP + F+ F N++QS S ES+EN ++ +PTG+GKT +A+L +++E
Sbjct: 126 LPDSFRGVFK-FTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLIKETNS 184
Query: 525 HINADGTI--------------------------------------NADEFKIIYVAPMR 546
N I A + II P +
Sbjct: 185 DTNNTKIIYIAPTKSLCYEMYKNWFPSFVNLSVGMLTSDTSFLETEKAKKCNIIITTPEK 244
Query: 547 -----------SLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGL 595
S + E+V DEIH + ++RG LE ++ R + +++R V L
Sbjct: 245 WDLLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGASLEVILTR----MNTMCQNIRFVAL 300
Query: 596 SATLPNYKDVATLLRIKPE--TGLFYFDNSFRPVALEQQYIGVT--EKKALKRFQVMNDI 651
SAT+PN +D+A L+ E + FD S+R V L + G + K ++ + N
Sbjct: 301 SATVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFVYGYSFNCKNDFQKDAIYNSK 360
Query: 652 VYEKVMEHAGRNQLLVSTLRVELTISPD--------FQWDEKLHGGSEGFWILVEDVDSE 703
+ E + +HA +L+ TIS F +K + IL E +
Sbjct: 361 LIEIIEKHADNRPVLIFCPTRASTISTAKFLLNNHIFSKSKKRCNHNPSDKILNECMQQG 420
Query: 704 VVLHHEYFLLKSRYATD 720
+ HH L+ R A +
Sbjct: 421 IAFHHAGISLEDRTAVE 437
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=Ta0835 PE=3 SV=1
Length = 674
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 130/441 (29%), Positives = 194/441 (43%), Gaps = 110/441 (24%)
Query: 809 VGNFGKDEIHLLHDE-RGPVLE--ALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLL 865
VG DEIH + DE RGP LE A IAR + DVR++ LSAT+ N ++A+ L
Sbjct: 136 VGLLVLDEIHTIGDESRGPTLETVASIARYV------NPDVRILALSATVSNAMELASWL 189
Query: 866 RIKPETGLFYFDNSFRPVAL-------EQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGR 918
+ L D FRPV L +Q Y+ + + +N I+ E V ++
Sbjct: 190 ----DASLIKSD--FRPVPLKTGILYRDQLYLDGKRRSGVS----INQIIRETVEDNG-- 237
Query: 919 NQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLL 978
Q+L+FV SRK+ TAR L Q GS + + ++ V + L ++L
Sbjct: 238 -QVLMFVSSRKKAEDTAR----------DLAQIF--GSDANIKISSDETNVYDDMLNEIL 284
Query: 979 PYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFAD 1038
P G A HHAG++ R +E F R I+V+V+T TLA GVNLPA V+ R +
Sbjct: 285 PRGVAFHHAGLSNDQRAFIEREFRARRIKVIVATPTLAAGVNLPARLVIVRDITR----- 339
Query: 1039 RHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDT 1098
WG + ++ L +++ QM+GRAGRP YD
Sbjct: 340 -------------WGSDGISY-------------------LTNMEIKQMIGRAGRPGYDQ 367
Query: 1099 KGEGVLITNHSELQY-----YLSLLNHQLPVESQMISKLPDMLN--AEIVLGTVQNLKDA 1151
G G LI S+ Y YLS PV S + ++ N A I +G ++ D
Sbjct: 368 YGIG-LIYVSSQSSYEAAKDYLS--TDPEPVVSYLGNEAKVRFNTLAAISMGLARSPSDI 424
Query: 1152 VTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKS 1211
+ + T + + D L+E I + LE++G IK +S
Sbjct: 425 MKFYETTLFFSQN---------GKDLLEEK----------ISASLKFLEKNGFIK---QS 462
Query: 1212 GHMQVTELGRIASHYYCTHET 1232
++ T+LG++ S Y E+
Sbjct: 463 PDLRTTQLGKVTSDLYIDPES 483
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 95/246 (38%), Gaps = 92/246 (37%)
Query: 488 RLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS 547
R+ + N+++ PT AGKT +A + + +++ K IY+ P+RS
Sbjct: 28 RMAIEQIRKGRNVVVSVPTAAGKTLIAYSAIYETFQRNL-----------KSIYIVPLRS 76
Query: 548 L-----------------VQEMVGNFGK-------------------------------- 558
L V+ +G++
Sbjct: 77 LAMEKFSELSRLRDLGLKVKMSIGDYDDSPDFIKRYDAVILTSEKADSLLHHDPYILNDV 136
Query: 559 -----DEIHLLHDE-RGPVLE--ALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLR 610
DEIH + DE RGP LE A IAR + DVR++ LSAT+ N ++A+ L
Sbjct: 137 GLLVLDEIHTIGDESRGPTLETVASIARYV------NPDVRILALSATVSNAMELASWL- 189
Query: 611 IKPETGLFYFDNSFRPVAL-------EQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRN 663
+ L D FRPV L +Q Y+ + + +N I+ E V E G+
Sbjct: 190 ---DASLIKSD--FRPVPLKTGILYRDQLYLDGKRRSGVS----INQIIRETV-EDNGQV 239
Query: 664 QLLVST 669
+ VS+
Sbjct: 240 LMFVSS 245
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 195/430 (45%), Gaps = 84/430 (19%)
Query: 815 DEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DE+HL+ DE RGP LE +A+ R ++++V LSAT+ N ++A L +
Sbjct: 145 DEVHLVDDEHRGPTLEVTLAKLRR----VNPNLQVVALSATVGNAGEMAEWLDAE----- 195
Query: 874 FYFDNSFRPVALEQ-----QYI----GVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVF 924
D+S+RP+ L + Q + G ++ ++R + + V + ++ G LVF
Sbjct: 196 -LVDSSWRPIELRKGVHYGQALHFGDGTQQELPVQRTEKPTEAVVRETLDEGGST--LVF 252
Query: 925 VHSRKETGKTARAIRDMCLEKDTLGQFLREGSASM-EVLRTEADQVKNGELRDLLPYGFA 983
V+SR+ A+ + + D L R +S+ E +R +D + +L D + G A
Sbjct: 253 VNSRRNAEGAAKRLAKTTV--DGLDADERAALSSLAEEIRAVSDTETSDDLADCVEQGAA 310
Query: 984 IHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQV 1043
HHAG + R+LVED F DR I+ + +T TLA GVN PA VV
Sbjct: 311 FHHAGCSSEHRSLVEDAFRDRLIKTICATPTLAAGVNTPARRVV---------------- 354
Query: 1044 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGV 1103
++ + Y+ + G L L+V QM+GRAGRP D GE V
Sbjct: 355 -------------------VRDWRRYSGDAGGMQPLSVLEVHQMMGRAGRPGRDPYGEAV 395
Query: 1104 LITN-HSELQYYLS--LLNHQLPVESQMISKLPDM---LNAEIVLGTVQNLKDAVTWLGY 1157
L+ + H EL L + PVES++ ++ P M L A + G + +++L
Sbjct: 396 LLADSHDELDELLDRYVWADPEPVESKL-AREPSMRTHLLATVASGFADSRSALLSFLDR 454
Query: 1158 TYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVT 1217
T LY R +G D L+ ++ T +LE +G I DR ++ T
Sbjct: 455 T-LYATQYR----HGDGEDNLER----------VVDTTLSYLETNGFI--DRDGDAIEAT 497
Query: 1218 ELGRIASHYY 1227
+LG S Y
Sbjct: 498 DLGHTVSRLY 507
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 469 PRYVQHAFED-FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHIN 527
P + H E+ ++L Q+ + + E+L+ PT +GKT VA L ML I +
Sbjct: 11 PWFADHLREEGIESLYPPQAAAVDAGVADGESLVASVPTASGKTLVAQLAMLSAIDRGGT 70
Query: 528 ADGTINADEFKIIYVAPMRSLVQEMVGNF 556
A +Y+ P+R+L E F
Sbjct: 71 A-----------LYIVPLRALASEKREEF 88
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 138/546 (25%), Positives = 213/546 (39%), Gaps = 142/546 (26%)
Query: 760 LPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE------------ 807
+P +GKT +A L ML I + D + + +Y+ P+R+L E
Sbjct: 47 VPTASGKTLIAQLAMLSAIAE--GGDSPTFSGDGTALYIVPLRALAGEKAQEFEAFERFG 104
Query: 808 -----MVGNFGKD-------------------------------------EIHLLHDE-R 824
GN+ +D E+HL+ D+ R
Sbjct: 105 LSVGVSTGNYERDGARLADNDIVVATSEKVDSLVRNGAGWIDDLSCVVADEVHLVDDDHR 164
Query: 825 GPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVA 884
GP LE +A+ + + D+++V LSAT+ N ++A L + D+ +RP+
Sbjct: 165 GPTLEVTLAKLRQQVA----DLQVVALSATVGNAGELAAWLDAE------LVDSDWRPIE 214
Query: 885 LEQQYIGVTEKKAL-------KRFQVMNDIVYEKVMEH--AGRNQLLVFVHSRKETGKTA 935
L GV ++L V + V+ A LVFV+SR+ +A
Sbjct: 215 LR---TGVHYGQSLHYDDGTQAELSVGSGSQTAAVVADTLADDGSTLVFVNSRRNAEASA 271
Query: 936 RAIRDMCLEKDTLGQFLREGSASMEV-LRTEADQVKNGELRDLLPYGFAIHHAGMTRVDR 994
R + D+ + L RE A + +R +D + EL D + G A HHAG+ R R
Sbjct: 272 RRLADVT--GNALSSAERERLADIAAEIRGVSDTETSDELADAVASGAAFHHAGLAREHR 329
Query: 995 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGV 1054
LVE+ F DR ++ + +T TLA GVN PA VV R W
Sbjct: 330 ELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRD---------------------W-- 366
Query: 1055 NLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITN-HSELQY 1113
Q Y+ G L L+V QM GRAGRP D GE VL+ N H EL+
Sbjct: 367 ------------QRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEE 414
Query: 1114 YLS--LLNHQLPVESQMISK--LPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPN 1169
+ PV S++ ++ L + A I G +LG T +
Sbjct: 415 LFDRYVYADPEPVRSKLAAEPALRTHVLAAIATGFTTTEDGLHEFLGGTLYATQTDDTGR 474
Query: 1170 LYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCT 1229
L ++ D L+ +L+R+G ++ R ++ T G++ S Y
Sbjct: 475 LRSVTGDVLR------------------YLDRNGFVE--RDGAALRATATGQLVSRLYVD 514
Query: 1230 HETMAT 1235
+ AT
Sbjct: 515 PMSAAT 520
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 69/222 (31%)
Query: 465 IDKLPRYVQHAFED--FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEI 522
+ LP V FE + L Q+ + + NL+ PT +GKT +A L ML I
Sbjct: 6 VPGLPGGVADHFEGEGVEELYPPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAI 65
Query: 523 GKHINADGTINADEFKIIYVAPMRSLVQE-----------------MVGNFGKD------ 559
+ D + + +Y+ P+R+L E GN+ +D
Sbjct: 66 AE--GGDSPTFSGDGTALYIVPLRALAGEKAQEFEAFERFGLSVGVSTGNYERDGARLAD 123
Query: 560 -------------------------------EIHLLHDE-RGPVLEALIARTIRNIEATQ 587
E+HL+ D+ RGP LE +A+ + +
Sbjct: 124 NDIVVATSEKVDSLVRNGAGWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQV---- 179
Query: 588 EDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVAL 629
D+++V LSAT+ N ++A L + D+ +RP+ L
Sbjct: 180 ADLQVVALSATVGNAGELAAWLDAE------LVDSDWRPIEL 215
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 138/546 (25%), Positives = 213/546 (39%), Gaps = 142/546 (26%)
Query: 760 LPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE------------ 807
+P +GKT +A L ML I + D + + +Y+ P+R+L E
Sbjct: 47 VPTASGKTLIAQLAMLSAIAE--GGDSPTFSGDGTALYIVPLRALAGEKAQEFEAFERFG 104
Query: 808 -----MVGNFGKD-------------------------------------EIHLLHDE-R 824
GN+ +D E+HL+ D+ R
Sbjct: 105 LSVGVSTGNYERDGARLADNDIVVATSEKVDSLVRNGAGWIDDLSCVVADEVHLVDDDHR 164
Query: 825 GPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVA 884
GP LE +A+ + + D+++V LSAT+ N ++A L + D+ +RP+
Sbjct: 165 GPTLEVTLAKLRQQVA----DLQVVALSATVGNAGELAAWLDAE------LVDSDWRPIE 214
Query: 885 LEQQYIGVTEKKAL-------KRFQVMNDIVYEKVMEH--AGRNQLLVFVHSRKETGKTA 935
L GV ++L V + V+ A LVFV+SR+ +A
Sbjct: 215 LR---TGVHYGQSLHYDDGTQAELSVGSGSQTAAVVADTLADDGSTLVFVNSRRNAEASA 271
Query: 936 RAIRDMCLEKDTLGQFLREGSASMEV-LRTEADQVKNGELRDLLPYGFAIHHAGMTRVDR 994
R + D+ + L RE A + +R +D + EL D + G A HHAG+ R R
Sbjct: 272 RRLADVT--GNALSSAERERLADIAAEIRGVSDTETSDELADAVASGAAFHHAGLAREHR 329
Query: 995 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGV 1054
LVE+ F DR ++ + +T TLA GVN PA VV R W
Sbjct: 330 ELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRD---------------------W-- 366
Query: 1055 NLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITN-HSELQY 1113
Q Y+ G L L+V QM GRAGRP D GE VL+ N H EL+
Sbjct: 367 ------------QRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEE 414
Query: 1114 YLS--LLNHQLPVESQMISK--LPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPN 1169
+ PV S++ ++ L + A I G +LG T +
Sbjct: 415 LFDRYVYADPEPVRSKLAAEPALRTHVLAAIATGFTTTEDGLHEFLGGTLYATQTDDTGR 474
Query: 1170 LYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCT 1229
L ++ D L+ +L+R+G ++ R ++ T G++ S Y
Sbjct: 475 LRSVTGDVLR------------------YLDRNGFVE--RDGAALRATATGQLVSRLYVD 514
Query: 1230 HETMAT 1235
+ AT
Sbjct: 515 PMSAAT 520
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 69/222 (31%)
Query: 465 IDKLPRYVQHAFED--FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEI 522
+ LP V FE + L Q+ + + NL+ PT +GKT +A L ML I
Sbjct: 6 VPGLPGGVADHFEGEGVEELYPPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAI 65
Query: 523 GKHINADGTINADEFKIIYVAPMRSLVQE-----------------MVGNFGKD------ 559
+ D + + +Y+ P+R+L E GN+ +D
Sbjct: 66 AE--GGDSPTFSGDGTALYIVPLRALAGEKAQEFEAFERFGLSVGVSTGNYERDGARLAD 123
Query: 560 -------------------------------EIHLLHDE-RGPVLEALIARTIRNIEATQ 587
E+HL+ D+ RGP LE +A+ + +
Sbjct: 124 NDIVVATSEKVDSLVRNGAGWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQV---- 179
Query: 588 EDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVAL 629
D+++V LSAT+ N ++A L + D+ +RP+ L
Sbjct: 180 ADLQVVALSATVGNAGELAAWLDAE------LVDSDWRPIEL 215
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 175/426 (41%), Gaps = 142/426 (33%)
Query: 760 LPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE------------ 807
+P +GKT +A L ML + + K +Y+ P+R+L E
Sbjct: 47 IPTASGKTLIAELAMLSSVARG-----------GKALYIVPLRALASEKQADFEEFEQYG 95
Query: 808 -----MVGNFGK-------------------------------------DEIHLLHD-ER 824
GN+ DE+HL+ D ER
Sbjct: 96 LDIGVSTGNYESEGGWLADKDIVVATSEKVDSLVRNDAPWIEDLTCVVTDEVHLVDDGER 155
Query: 825 GPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVA 884
GP LE +A+ R D++ V LSAT+ N + +AT L + GL D+ +RP+
Sbjct: 156 GPTLEVTLAKLRR----LNPDLQTVALSATIGNAEALATWL----DAGLV--DSDWRPID 205
Query: 885 LEQQYIGVTEKKAL-------KRFQVMND-----IVYEKVMEHAGRNQLLVFVHSRKET- 931
L++ GV +AL +R V N+ + +E G LVFV+SR+
Sbjct: 206 LQK---GVHYGQALHLEDGSQQRLSVQNNEKQTAAIVRDTLEDDGST--LVFVNSRRNAE 260
Query: 932 ---GKTARAIRD--MCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHH 986
G+ A +R E+D L E +R +D + +L D + G A HH
Sbjct: 261 AAAGRLANTVRPHLSTEERDQLADIAEE-------IRDVSDTETSDDLADAVADGAAFHH 313
Query: 987 AGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVS 1046
AG++R H R LVED F DR ++V+ +
Sbjct: 314 AGLSR-------------------------------GH----RELVEDAFRDRLVKVVCA 338
Query: 1047 TATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLI- 1105
T TLA GVN P+ V+++ + Y+ G L L+V QM+GRAGRP D GE VLI
Sbjct: 339 TPTLAAGVNTPSRRVVVRDWRRYDGSAGGMAPLSVLEVHQMMGRAGRPGLDPYGEAVLIA 398
Query: 1106 TNHSEL 1111
++H E+
Sbjct: 399 SSHDEV 404
Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 486 QSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545
Q+ ++ + ENL+ PT +GKT +A L ML + + K +Y+ P+
Sbjct: 29 QAEAVEAGVTEGENLVASIPTASGKTLIAELAMLSSVARG-----------GKALYIVPL 77
Query: 546 RSLVQEMVGNF 556
R+L E +F
Sbjct: 78 RALASEKQADF 88
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 130/440 (29%), Positives = 196/440 (44%), Gaps = 80/440 (18%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DEIH L D RGPVLE+++A+ +R++ + +GLSAT+ N +VA L G
Sbjct: 143 DEIHYLGDPRRGPVLESIVAK-LRHLGLKTQ---FIGLSATVGNAGEVAAWL------GA 192
Query: 874 FYFDNSFRPVAL-EQQYIGVTEK---KALKRFQVMNDI-VYEKVMEHAGRNQLLVFVHSR 928
++S+RPV L E Y G + +++R D V V AG Q LVF +SR
Sbjct: 193 RLVESSWRPVPLREGVYHGGVIRFSDGSMQRVNAPGDAEVALAVDAVAGGGQALVFTNSR 252
Query: 929 KETGKTARAIRDMCLEKDTLGQFLREGSA-SMEVLRTEADQVKNGELRDLLPYGFAIHHA 987
T + A+A+ + G R A + EVL+ + ++ EL DL+ G A H+A
Sbjct: 253 SSTVRLAKAVAKAM---EAAGLVPRGAKALAEEVLKASSSKIIGRELADLVARGVAFHNA 309
Query: 988 GMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVST 1047
G+ R LVED F ++V+VST TLA GVNLPA VV
Sbjct: 310 GLELEVRRLVEDGFRRGLLKVVVSTTTLAAGVNLPARRVV-------------------- 349
Query: 1048 ATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLIT- 1106
+ + ++P GR E+ L+ QM GRAGRP D GE VL+
Sbjct: 350 ---------------VADYERFDPALGRE-EIPVLEYRQMAGRAGRPGLDPYGEAVLVAR 393
Query: 1107 NHSELQYYLS-LLNHQL-PVESQMISKLPDM---LNAEIVLGTVQNLKDAVTWLGYTYLY 1161
+ E +Y + + Q+ V S ++++ P++ + + G ++L D V + T
Sbjct: 394 SKGEAEYLMERYVRGQVEGVRSHILAE-PNLRAHVLGAVGGGYAKSLDDLVDFFSNT--- 449
Query: 1162 IRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGR 1221
+ +K L R+ I L G + +R + TELGR
Sbjct: 450 -----------LGAAQMKTSLKLSILRSK-IGGVVEELVEWGFL--ERDGDFVYATELGR 495
Query: 1222 IASHYYCTHETMATYNQLLK 1241
+ Y E A Y +L+K
Sbjct: 496 QVARLYLDPEVAAGYIRLIK 515
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 11/74 (14%)
Query: 559 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 617
DEIH L D RGPVLE+++A+ +R++ + +GLSAT+ N +VA L G
Sbjct: 143 DEIHYLGDPRRGPVLESIVAK-LRHLGLKTQ---FIGLSATVGNAGEVAAWL------GA 192
Query: 618 FYFDNSFRPVALEQ 631
++S+RPV L +
Sbjct: 193 RLVESSWRPVPLRE 206
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 142/306 (46%), Gaps = 70/306 (22%)
Query: 805 VQEMVGNFGKDEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT 863
+ E VG DEIH++ DE RGP LE +I T R + + R++ LSAT+ N ++A
Sbjct: 132 MMEEVGLMVIDEIHMIGDEYRGPTLETVIT-TARYV---NPETRIIALSATVSNASEIAE 187
Query: 864 LLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKAL-----KRFQVMNDIVYEKVMEHAGR 918
L +SFRPV L+ +G+ + L R V +++ ++ ++ G
Sbjct: 188 WLNAS------LIKSSFRPVPLK---VGILYRNRLFLDGDARSDVDINLLVKETVDDGG- 237
Query: 919 NQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLL 978
Q+L+FV SRK A+ + + + L + +E V + L ++L
Sbjct: 238 -QVLIFVSSRKRAEDMAKNLSQLFDPINDLK------------VSSEDANVYDDLLNEML 284
Query: 979 PYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFAD 1038
P+G + HHAG++ R+ +E F RH
Sbjct: 285 PHGVSFHHAGLSNEQRSFIEKAF--RH--------------------------------- 309
Query: 1039 RHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDT 1098
R ++V+V+T TLA GVNLPA VI+K Y + L ++V QM+GRAGRP YD
Sbjct: 310 RKLKVIVATPTLAAGVNLPARLVIVKDVTRYGDLGITY--LSNMEVKQMIGRAGRPGYDQ 367
Query: 1099 KGEGVL 1104
G G++
Sbjct: 368 YGIGII 373
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 84/244 (34%)
Query: 486 QSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545
R+ +N+++ PT AGKT +A + + K + K IY+ P+
Sbjct: 26 HQRMAIEQFRKGKNIMVSVPTAAGKTLIAYSAIYETFKK-----------KLKSIYIVPL 74
Query: 546 RSLVQE-----------------MVGNFGK------------------------------ 558
RSL E +GN+
Sbjct: 75 RSLAMEKYEELSRLRELGMRVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHHDPYMME 134
Query: 559 -------DEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLR 610
DEIH++ DE RGP LE +I T R + + R++ LSAT+ N ++A L
Sbjct: 135 EVGLMVIDEIHMIGDEYRGPTLETVIT-TARYV---NPETRIIALSATVSNASEIAEWLN 190
Query: 611 IKPETGLFYFDNSFRPVALEQQYIGVTEKKAL-----KRFQVMNDIVYEKVMEHAGRNQL 665
+SFRPV L+ +G+ + L R V +++ ++ ++ G+ +
Sbjct: 191 AS------LIKSSFRPVPLK---VGILYRNRLFLDGDARSDVDINLLVKETVDDGGQVLI 241
Query: 666 LVST 669
VS+
Sbjct: 242 FVSS 245
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 160/344 (46%), Gaps = 83/344 (24%)
Query: 812 FGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPE 870
F DE+H L+D ERGPV+E++ R R L+ LSAT+ NYK +A L +P
Sbjct: 142 FVLDELHYLNDPERGPVVESVTIRAKRR--------NLLALSATISNYKQIAKWLGAEPV 193
Query: 871 TGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVM-----------NDIVYEKVMEHAGRN 919
++RPV L + + KK K + ++ +D + ++ +N
Sbjct: 194 A------TNWRPVPLMEGVMYPERKK--KEYTILFRDNTARKVHGDDAIIAYTLDSLSKN 245
Query: 920 -QLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGE----- 973
Q+LVF +SRK TA I + F+ ++ + + D ++ G
Sbjct: 246 GQVLVFRNSRKMAESTALKIANYM-------NFVSLDEKAISEILKQLDDIEEGGSDEKE 298
Query: 974 -LRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLV 1032
L+ L+ G A HHAG+++ R ++E+ F R I+V+V+T TLA GVNLPA TV+ +
Sbjct: 299 LLKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIVATPTLAAGVNLPARTVI----I 354
Query: 1033 EDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAG 1092
D++ R + +V G + E+ ++ QM GRAG
Sbjct: 355 GDIY--RFNRKIV----------------------------GYYDEIPVMEYKQMSGRAG 384
Query: 1093 RPQYDTKGEGVLITNHSE-----LQYYLSLLNHQLPVESQMISK 1131
RP +D GE +++ E + Y +L+ P+ES++ S+
Sbjct: 385 RPGFDQIGESIIVVRDKEDVDRVFKKY--ILSDVEPIESKLGSE 426
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 84/210 (40%), Gaps = 61/210 (29%)
Query: 467 KLPRYVQHAFED--FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVA----LLCMLQ 520
KLP V ++ K LN Q+ K L LLL +PTG+GKT +A + +L+
Sbjct: 7 KLPSNVIDIIKNRGIKKLNPPQTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGIISFLLK 66
Query: 521 EIGKHIN---------------------------ADGTINADE-----FKIIYVA--PMR 546
GK I G + D+ + II +
Sbjct: 67 NGGKAIYVTPLRALTNEKYLTFKDWESIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLD 126
Query: 547 SLVQEM------VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATL 599
SL + F DE+H L+D ERGPV+E++ R R L+ LSAT+
Sbjct: 127 SLWRHRPDWLNEANYFVLDELHYLNDPERGPVVESVTIRAKRR--------NLLALSATI 178
Query: 600 PNYKDVATLLRIKPETGLFYFDNSFRPVAL 629
NYK +A L +P ++RPV L
Sbjct: 179 SNYKQIAKWLGAEPVA------TNWRPVPL 202
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 114/484 (23%), Positives = 200/484 (41%), Gaps = 120/484 (24%)
Query: 788 INADEFKIIYVAPM---RSLVQEMV--------GNFGKDEIHLLHD-ERGPVLEALIART 835
I E K +Y+A + SLV ++ G DE+H++ + RG +LE +A+
Sbjct: 384 IKRREKKSLYIATIEKAHSLVNALIETSRLSTLGLVVVDELHMIGEGSRGAILEMTLAKV 443
Query: 836 IRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEK 895
+ + TQ ++G+SATL N +D+ L+ + Y+ + FRPV L ++++ V +
Sbjct: 444 LYTSKTTQ----IIGMSATLNNVEDLQAFLKAE------YYTSQFRPVEL-KEFLKVNDT 492
Query: 896 KALKRFQVMNDIVYEKVMEHAGRNQL---------------------LVFVHSRKETGKT 934
Q + + + +++ + L LVF S+K
Sbjct: 493 IYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALVTEVIPNYSCLVFCPSKKNCENV 552
Query: 935 ARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDR 994
A + L KD L +E ++ LR + L+ +P+G A HH+G+T +R
Sbjct: 553 AEMLCKF-LSKDYLNHREKEKCEVIKSLRNIGNGKVCPVLKRTVPFGIAYHHSGLTSEER 611
Query: 995 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRT-LVEDLFADRHIQVLVSTATLAWG 1053
L+E+ ++ + +L T+TLA GVNLPA V+ R V + F R+
Sbjct: 612 KLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYVANTFLKRN------------- 658
Query: 1054 VNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQY 1113
QM+GRAGR DT GE +L+ + Q
Sbjct: 659 -----------------------------QYKQMVGRAGRAGIDTAGESILLLQEKDKQQ 689
Query: 1114 YLSLLNHQL-PVESQMISKLPDMLNA----EIVLGTVQNLKDAVTWLGYTYLYIR---ML 1165
L L++ L S ++ + + A I L +L D ++ T+ ++ +L
Sbjct: 690 VLELISGPLETCCSHLVEEFTKGIQALFLSLIGLKIAASLGDIYQFMSGTFFGVQQKILL 749
Query: 1166 RAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKS------GHMQVTEL 1219
+ +L+ I+ DAL+ HL GL++ D H ++T+L
Sbjct: 750 KEKSLWEITVDALE------------------HLTEKGLLQKDSCGDNEGLECHFRITKL 791
Query: 1220 GRIA 1223
G+ +
Sbjct: 792 GQAS 795
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 77/251 (30%)
Query: 458 PDETLVPIDKLPRYVQHAFEDFKTLNRI----QSRLCKSALESDENLLLCAPTGAGKTNV 513
P + L P LP V+ + K + ++ + L +++ +NL+ PT GKT V
Sbjct: 268 PSDDLGPFYSLPSKVRDLYVQLKGIKKLYDWQHTCLTLRSVQERKNLIYSLPTSGGKTLV 327
Query: 514 ALLCMLQE-----------------------------------IGKHINADG---TINAD 535
A + MLQE + ++ + G I
Sbjct: 328 AEILMLQELLCRQKDVLMILPYVAIVQEKISSLSSFGIELGFFVEEYAGSKGRFPPIKRR 387
Query: 536 EFKIIYVAPM---RSLVQEMV--------GNFGKDEIHLLHD-ERGPVLEALIARTIRNI 583
E K +Y+A + SLV ++ G DE+H++ + RG +LE +A+ +
Sbjct: 388 EKKSLYIATIEKAHSLVNALIETSRLSTLGLVVVDELHMIGEGSRGAILEMTLAKVLYTS 447
Query: 584 EATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALK 643
+ TQ ++G+SATL N +D+ L+ + Y+ + FRPV LK
Sbjct: 448 KTTQ----IIGMSATLNNVEDLQAFLKAE------YYTSQFRPV-------------ELK 484
Query: 644 RFQVMNDIVYE 654
F +ND +YE
Sbjct: 485 EFLKVNDTIYE 495
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 142/310 (45%), Gaps = 80/310 (25%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DEIHL+ +RG LE +I + + +++GLSAT+ N +++A L K
Sbjct: 145 DEIHLIGSRDRGATLEFIITQMLNR-------AQIIGLSATIGNPEELAEWLNAK----- 192
Query: 874 FYFDNSFRPVALEQQ--YIGVT--EKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRK 929
+ +RPV L + Y G E ++F ++VY+ + G LVFV+ R+
Sbjct: 193 -LIKSDWRPVKLRRGVFYQGFVFWEDGKTEKFNSWEELVYDAIKRSKGS---LVFVNMRR 248
Query: 930 ETGKTA----RAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIH 985
+ KTA + IR+ +K+ + L+E + S+E + N +L L G A H
Sbjct: 249 KAEKTALELSKKIRNFLTKKEL--RELKELAESLE------ENPTNEKLAKALQGGVAFH 300
Query: 986 HAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLV 1045
HAG+ R +R LVE+ F I+V+V+T TL+ G+N PA V+ R
Sbjct: 301 HAGLGREERVLVEENFKKGLIKVVVATPTLSAGINTPAFRVIVRD--------------- 345
Query: 1046 STATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGA-----LDVLQMLGRAGRPQYDTKG 1100
W R+ E G L++ QM+GRAGRP+YD G
Sbjct: 346 -----TW----------------------RYSEFGMERIPILEIQQMMGRAGRPKYDEVG 378
Query: 1101 EGVLITNHSE 1110
E ++++ E
Sbjct: 379 EAIIVSTTEE 388
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 116/406 (28%), Positives = 181/406 (44%), Gaps = 98/406 (24%)
Query: 807 EMVGNFGKDEIHLLHDE-RGPVLEALIARTI---RNIEATQED--------VRLVGLSAT 854
+++G DE+H+L D RG +LE L+ + R + Q D V++VG+SAT
Sbjct: 208 DLLGMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSAT 267
Query: 855 LPNYKDVATLLRIKPETGLFYFDNSFRPVAL-EQQYIGVT----EKKALKRF----QVMN 905
LPN + VA+ L + L++ D FRPV L E +G + K ++ F QV
Sbjct: 268 LPNLELVASWLNAE----LYHTD--FRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKG 321
Query: 906 D------IVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASM 959
D + YE + ++ + +L+F S+K K A I + L + S
Sbjct: 322 DEDHVVSLCYETICDN---HSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECP 378
Query: 960 EVLRTEA------DQVK------NGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQ 1007
V+ + DQ++ + L+ +P+G A HHAG+T +R ++E F I+
Sbjct: 379 PVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIR 438
Query: 1008 VLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQ 1067
VL +T+TL+ GVNLPA V+ RT +F R + +L
Sbjct: 439 VLAATSTLSSGVNLPARRVIIRT---PIFGGRPLDILTYK-------------------- 475
Query: 1068 IYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQL-PVES 1126
QM+GRAGR DT GE +LI +SE ++LL L PV S
Sbjct: 476 ------------------QMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRS 517
Query: 1127 QMISK-----LPDMLNA--EIVLGTVQNL-KDAVTWLGYTYLYIRM 1164
+ + M+ A EI++G V + +D T+ T+L M
Sbjct: 518 CLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTFLAASM 563
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 83/192 (43%), Gaps = 68/192 (35%)
Query: 498 ENLLLCAPTGAGKTNVALLCML-------------------------------QEIGKHI 526
+NL+ APT AGKT VA L +L QE+G I
Sbjct: 109 KNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVG--I 166
Query: 527 NADG----TINADEFKIIYVAP---------MRSLVQE----MVGNFGKDEIHLLHDE-R 568
DG T + F + +A + L++E ++G DE+H+L D R
Sbjct: 167 KVDGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHR 226
Query: 569 GPVLEALIARTI---RNIEATQED--------VRLVGLSATLPNYKDVATLLRIKPETGL 617
G +LE L+ + R + Q D V++VG+SATLPN + VA+ L + L
Sbjct: 227 GYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLNAE----L 282
Query: 618 FYFDNSFRPVAL 629
++ D FRPV L
Sbjct: 283 YHTD--FRPVPL 292
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 /
Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 160/377 (42%), Gaps = 101/377 (26%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DE H++ + RGPV+E+ I R VR+V LSATL N ++A L +
Sbjct: 133 DEFHMIGEYTRGPVIESAITRA----RTLNPSVRIVALSATLSNMDEIAGWLDAR----- 183
Query: 874 FYFDNSFRPVALEQQYI-----GVTEKKALKRFQVMNDIVYEKVMEHA--GRNQLLVFVH 926
++ +RPV L ++ + GV EK ND+V KV+E + +Q L FV
Sbjct: 184 -VVEHDYRPVPLHREVLDTEMFGVREK---------NDVVL-KVLERSLEDGSQTLAFVS 232
Query: 927 SRKETGKTARAIRDMCLEK---DTLGQFLREGSASMEVLRTEADQVKNG--ELRDLLPYG 981
+R+ T A + D K D + F +EV ++ + +L + L G
Sbjct: 233 TRRFTESLASHLADKISGKIPDDMVESFREVAGKVLEVPKSRGSPPTSTCLKLAECLEAG 292
Query: 982 FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHI 1041
A HHAG+ R ++ED F D +I ++ +T +L +GVNLP+ TVV R
Sbjct: 293 IAFHHAGLFNRQREIIEDEFRDGNILMITATPSLMYGVNLPSRTVVIR------------ 340
Query: 1042 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELG-----ALDVLQMLGRAGRPQY 1096
+ RW G D QM GRAGRPQY
Sbjct: 341 ------------------------------DYTRWTSQGPRRIPVFDYEQMSGRAGRPQY 370
Query: 1097 DTKGEGVLIT-NHSEL----QYYL---------SLLNHQLPVESQMISKLPDMLNAEIVL 1142
D G LI +H E +YY+ ++ ++ + Q+I+++ L+
Sbjct: 371 DDAGYSYLIARSHDEAMDLEEYYIRGEVERTTSRIIENRDALYRQIIAQVASGLS----- 425
Query: 1143 GTVQNLKDAV--TWLGY 1157
GT + L D T+ GY
Sbjct: 426 GTTEELADFFRNTFYGY 442
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 84/251 (33%)
Query: 475 AFEDFKTLNRIQ-SRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTIN 533
+ + LN Q S + LES++N ++ PT +GKT + ++ L+ +
Sbjct: 15 CYPHIRELNPAQRSAIEAGYLESEDNYIIAIPTASGKTLLGIIAALKTV----------- 63
Query: 534 ADEFKIIYVAPMRSLVQEMVGNFGK----------------------------------- 558
+ ++IY P+ S+ E + F K
Sbjct: 64 MEGGRVIYTVPLLSIQNEKIKEFRKLEEHGIRVGKDPRTSDIAVMVFESFDSLTRFSWNI 123
Query: 559 ---------DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATL 608
DE H++ + RGPV+E+ I R VR+V LSATL N ++A
Sbjct: 124 LREVDLLIVDEFHMIGEYTRGPVIESAITRA----RTLNPSVRIVALSATLSNMDEIAGW 179
Query: 609 LRIKPETGLFYFDNSFRPVALEQQYI-----GVTEKKALKRFQVMNDI---VYEKVMEHA 660
L + ++ +RPV L ++ + GV EK ND+ V E+ +E
Sbjct: 180 LDAR------VVEHDYRPVPLHREVLDTEMFGVREK---------NDVVLKVLERSLEDG 224
Query: 661 GRNQLLVSTLR 671
+ VST R
Sbjct: 225 SQTLAFVSTRR 235
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3 SV=1
Length = 704
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 100/339 (29%), Positives = 155/339 (45%), Gaps = 68/339 (20%)
Query: 809 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRI 867
V F DE H L+D ERGP +E++ R A + + ++GLSAT+ N K++A L
Sbjct: 142 VSYFVLDEFHYLNDPERGPTVESVAIR------AKKRGI-VLGLSATISNGKEIANWLNA 194
Query: 868 KPETGLFYFDNSFRPVAL-------EQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRN- 919
+ ++RPV L E++ V K R +D + ++ +
Sbjct: 195 E------LVATNWRPVPLKEGIIYPEKKGFVVVYKDNTSRKVYGDDAIIAYTLDIVSKGG 248
Query: 920 QLLVFVHSRKETGKTARAIRDMC----LEKDTLGQFLREGSASMEVLRTEADQVKNGELR 975
Q+LVF SRK TAR I LE L + R+ + E + + N LR
Sbjct: 249 QVLVFRSSRKLAENTARKIVQYMNFVKLEDKKLLEIARKIKEVEDAGSNEKEDLYNLVLR 308
Query: 976 DLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDL 1035
G A HHAG+++ R ++E F DR ++V+V+T TLA GVNLPA VV + D+
Sbjct: 309 -----GVAYHHAGLSKGLRDIIESSFRDRILKVIVATPTLAAGVNLPARAVV----IGDI 359
Query: 1036 FADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ 1095
+ R+ + +V L + +D QM GRAGRP
Sbjct: 360 Y--RYNRKVVGYMDL----------------------------IPVMDYKQMSGRAGRPG 389
Query: 1096 YDTKGEGVLITNH---SELQYYLSLLNHQLPVESQMISK 1131
+D GE V++ + +E Y L++ P+ES++ S+
Sbjct: 390 FDENGEAVVVVRNKREAEKVYERYLMSDVEPIESKLGSE 428
Score = 41.2 bits (95), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 479 FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFK 538
+TLN QS + L + LL+ +PT +GKT +A L M+ ++ + G K
Sbjct: 24 IRTLNPPQSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMIN----YLLSKGG------K 73
Query: 539 IIYVAPMRSLVQEMVGNF 556
IY+ P+R+L E F
Sbjct: 74 AIYITPLRALTNEKYNTF 91
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=Cmaq_0318
PE=3 SV=1
Length = 756
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 149/320 (46%), Gaps = 64/320 (20%)
Query: 809 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRI 867
VG DEIH ++D ERGP++E+++A+ + + +++GLSAT+ N +++A L
Sbjct: 140 VGQLIIDEIHFINDDERGPIIESIVAK----LRMLNLNPQIIGLSATIGNPEELANWLNA 195
Query: 868 KPETGLFYFDNSFRPVALEQ--------QYIGVTEKKALKRFQVMNDIVYEKVMEHAGRN 919
K + +RPV+L + Y+ EK+ + + ++ + + +
Sbjct: 196 K------LVKSDWRPVSLREGVYHKGVVTYVNDGEKRISGQGDSLINLTVDTLNDGG--- 246
Query: 920 QLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSA---SMEVLRTEADQVKNGELRD 976
Q+LVF SR+ + AR + + +++ G A + EV T + ++ EL
Sbjct: 247 QVLVFSSSRQGAVRIARKLAEYICSSPV--RYIDPGEAGKLAEEVRETSSSRILAEELTG 304
Query: 977 LLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLF 1036
L+ G + HHAG+ R ++E+ F ++VL ST TLA GVNL
Sbjct: 305 LIKCGVSFHHAGLELEVRRVIEEGFRRGVLRVLASTTTLAAGVNL--------------- 349
Query: 1037 ADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQY 1096
PA VI+ + Y P G ++E+ ++ QM GRAGRP
Sbjct: 350 --------------------PARRVIVNEYRRYEPGYG-FIEIPVMEYKQMAGRAGRPGL 388
Query: 1097 DTKGEGVLI-TNHSELQYYL 1115
D GE ++I ++ E+ Y +
Sbjct: 389 DPYGEAIIIVSSKDEVDYVI 408
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 11/80 (13%)
Query: 553 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRI 611
VG DEIH ++D ERGP++E+++A+ + + +++GLSAT+ N +++A L
Sbjct: 140 VGQLIIDEIHFINDDERGPIIESIVAK----LRMLNLNPQIIGLSATIGNPEELANWLNA 195
Query: 612 KPETGLFYFDNSFRPVALEQ 631
K + +RPV+L +
Sbjct: 196 K------LVKSDWRPVSLRE 209
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 141/309 (45%), Gaps = 78/309 (25%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DEIHL+ +RG LE +I + + +++GLSAT+ N +++A L K
Sbjct: 145 DEIHLIGSRDRGATLEFIITQMLGR-------AQIIGLSATIGNPEELAEWLNAK----- 192
Query: 874 FYFDNSFRPVALEQQ--YIGVT--EKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRK 929
+ +RPV L + Y G E +R+ ++VY+ V + G LVFV+ R+
Sbjct: 193 -LIRSDWRPVKLRKGVFYQGFVFWEDGGSERYNSWEELVYDAVKKGKG---ALVFVNMRR 248
Query: 930 ETGKTARAIRDMC---LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHH 986
+ KTA + L++ L + LRE + S+E + N +L L G A HH
Sbjct: 249 KAEKTALELAKKVKNYLDRKELRE-LRELAESLE------ENPTNEKLAKALLSGVAFHH 301
Query: 987 AGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVS 1046
AG+ R +R LVED F I+V+V+T TL+ G+N PA V+ R
Sbjct: 302 AGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIRD---------------- 345
Query: 1047 TATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELG-----ALDVLQMLGRAGRPQYDTKGE 1101
W R+ E G L+V QM+GRAGRP+YD GE
Sbjct: 346 ----TW----------------------RYSEFGMERIPVLEVQQMMGRAGRPRYDEVGE 379
Query: 1102 GVLITNHSE 1110
++++ E
Sbjct: 380 AIIVSTTEE 388
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 146/632 (23%), Positives = 261/632 (41%), Gaps = 108/632 (17%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DEIH + D +RGP+LE++++R + A+ + +LVGLSAT+PN ++A + G
Sbjct: 146 DEIHSVSDPKRGPILESIVSRML----ASAGEAQLVGLSATVPNAGEIAEWI------GG 195
Query: 874 FYFDNSFRPVALEQQ-------YIGVTEKKALKRFQVMNDI-VYEKVMEHAGRNQLLVFV 925
++S+RPV L + Y + + R + D+ + + +E G Q LVF
Sbjct: 196 KIVESSWRPVPLREYVFKEYKLYSPTGGLREVPRVYGLYDLDLAAEAIEDGG--QALVFT 253
Query: 926 HSRKETGKTARAIRDMCLEKDTLGQFLREGSA---SMEVLRTE-ADQVKNGELRDLLPYG 981
+SR+ RA+ LG+ L A S E R E A + EL L+ G
Sbjct: 254 YSRR------RAVTLAKRAAKRLGRRLSSREARVYSAEASRAEGAPRSVAEELASLIAAG 307
Query: 982 FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHI 1041
A HHAG+ R VE+ F ++V+ ST TLA GVNLPA VV +
Sbjct: 308 IAYHHAGLPPSLRKTVEEAFRAGAVKVVYSTPTLAAGVNLPARRVVIDSY---------- 357
Query: 1042 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101
Y E G + + QM GRAGRP D GE
Sbjct: 358 ---------------------------YRYEAGFREPIRVAEYKQMAGRAGRPGLDEFGE 390
Query: 1102 GVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLY 1161
+++ L+ + S I P+ + + L ++ L+ + +
Sbjct: 391 AIIVAER---------LDRPEDLISGYIRAPPERVESR--LAGLRGLRHFILGIVAPEGE 439
Query: 1162 IRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGR 1221
+ + + G++ +L+ E I A L GL++ K + T LGR
Sbjct: 440 VSIGSIEKVSGLTLYSLQRGLPRET-----IARAVEDLSAWGLVEV--KGWRIAATSLGR 492
Query: 1222 IASHYYCTHETMATYNQLLKPTLSEIE---LFRVFSLSGEFRHITVREEEKLELQKLMER 1278
+ Y E++ + + +K + E L+ + ++ R R EE+ L+ +++
Sbjct: 493 EVAAVYLDPESVPVFREEVKHLSFDNEFDILYLISTMPDMVRLPATRREEERLLEAILDA 552
Query: 1279 APIPIKE-----STDEPSAKVNILLQAYISQ-----LKLEGFALMSDMVFVTQSAARLMR 1328
+P + + + K ++L+ +I + + E D++ + +A +
Sbjct: 553 SPRMLSSVDWLGPEEMAAVKTAVVLKLWIDEASEDTIYGEWGVHTGDLLNMVSTAEWIAS 612
Query: 1329 AIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSP-LRQFRKIPEEIIKKIEKKNF---P 1384
+ I Y G L K + ++ RR+ + P L Q +IP + ++ +
Sbjct: 613 GLSRIAPYLG---LNSKVSHILSVIARRIKHGVKPELLQLVEIPG--VGRVRARILFEAG 667
Query: 1385 WERLYDLGPNEIGELIRVPKLGKTIHKYVHQF 1416
+ + DL +L+R+P +G + + + +F
Sbjct: 668 YRSIEDLATARAEDLMRLPLIGPSTARQILEF 699
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 73/201 (36%)
Query: 486 QSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545
Q ++ +E ENL++ APTG+GKT +AL+ ++ + + A G + Y+ P+
Sbjct: 32 QYMALQAGVEKGENLVVAAPTGSGKTFIALVAIVNSLAR---AGG-------RAFYLVPL 81
Query: 546 RSLVQE-----------------MVGNFGK------------------------------ 558
+S+ E VG+F +
Sbjct: 82 KSVAYEKYTSFSILSRMGLKLKISVGDFREGPPEAPVVIATYEKFDSLLRVSPSLARNVS 141
Query: 559 ----DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKP 613
DEIH + D +RGP+LE++++R + A+ + +LVGLSAT+PN ++A +
Sbjct: 142 VLIVDEIHSVSDPKRGPILESIVSRML----ASAGEAQLVGLSATVPNAGEIAEWI---- 193
Query: 614 ETGLFYFDNSFRPVALEQQYI 634
G ++S+RPV L ++Y+
Sbjct: 194 --GGKIVESSWRPVPL-REYV 211
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
Length = 1101
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 101/432 (23%), Positives = 181/432 (41%), Gaps = 100/432 (23%)
Query: 792 EFKIIYVAPM---RSLVQEMV--------GNFGKDEIHLLHD-ERGPVLEALIARTIRNI 839
E K +Y+A + SLV ++ G DE+H++ + RG LE +A+ +
Sbjct: 429 EKKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILYTS 488
Query: 840 EATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALK 899
+ TQ ++G+SATL N +D+ L+ + Y+ + FRPV L ++Y+ + +
Sbjct: 489 KTTQ----IIGMSATLNNVEDLQKFLQAE------YYTSQFRPVEL-KEYLKINDTIYEV 537
Query: 900 RFQVMNDIVYEKVMEHAGRNQL---------------------LVFVHSRKETGKTARAI 938
+ N + + +++ + + L LVF S+K A I
Sbjct: 538 DSKAENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPNYSCLVFCPSKKNCENVAEMI 597
Query: 939 RDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVE 998
L K+ L +E ++ L+ + L+ +P+G A HH+G+T +R L+E
Sbjct: 598 CKF-LSKEYLKHKEKEKCEVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLE 656
Query: 999 DLFADRHIQVLVSTATLAWGVNLPAHTVVDRT-LVEDLFADRHIQVLVSTATLAWGVNLP 1057
+ ++ + + T+TLA GVNLPA V+ R V F R+
Sbjct: 657 EAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRN----------------- 699
Query: 1058 AHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSL 1117
QM+GRAGR DT GE +LI + Q L L
Sbjct: 700 -------------------------QYKQMIGRAGRAGIDTIGESILILQEKDKQQVLEL 734
Query: 1118 LNHQLPVES-------QMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIR---MLRA 1167
+ P+E+ + + + + I L NL D ++ T+ ++ +L+
Sbjct: 735 ITK--PLENCYSHLVQEFTKGIQTLFLSLIGLKIATNLDDIYHFMNGTFFGVQQKVLLKE 792
Query: 1168 PNLYGISHDALK 1179
+L+ I+ ++L+
Sbjct: 793 KSLWEITVESLR 804
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 117/286 (40%), Gaps = 82/286 (28%)
Query: 426 NKRCELPDGSFRKQRKGY---EEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTL 482
N + + P S KQ K EE++V + D L P LP V+ + FK +
Sbjct: 276 NAKAQTPIFSRSKQLKDTLLSEEINVAKKTVESSSND--LGPFYSLPSKVRDLYAQFKGI 333
Query: 483 NRI----QSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQE----------------- 521
++ + L ++++ +NL+ PT GKT VA + MLQE
Sbjct: 334 EKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAI 393
Query: 522 IGKHINADGTINAD---------------------EFKIIYVAPM---RSLVQEMV---- 553
+ + I+ + + E K +Y+A + SLV ++
Sbjct: 394 VQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGR 453
Query: 554 ----GNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATL 608
G DE+H++ + RG LE +A+ + + TQ ++G+SATL N +D+
Sbjct: 454 IDSLGLVVVDELHMIGEGSRGATLEMTLAKILYTSKTTQ----IIGMSATLNNVEDLQKF 509
Query: 609 LRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYE 654
L+ + Y+ + FRPV LK + +ND +YE
Sbjct: 510 LQAE------YYTSQFRPV-------------ELKEYLKINDTIYE 536
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 166/362 (45%), Gaps = 79/362 (21%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DEIHL+ +RG LE ++A + +++GLSAT+ N +++A L +
Sbjct: 145 DEIHLIGSRDRGATLEVILAHMLGK-------AQIIGLSATIGNPEELAEWLNAE----- 192
Query: 874 FYFDNSFRPVALEQ----QYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRK 929
+ +RPV L + Q E ++ RF ++VY+ + + G L+FV+ R+
Sbjct: 193 -LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKG---ALIFVNMRR 248
Query: 930 ETGKTA----RAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIH 985
+ + A + ++ + + + + L E + S+E + N +L + G A H
Sbjct: 249 KAERVALELSKKVKSLLTKPEI--RALNELADSLE------ENPTNEKLAKAIRGGVAFH 300
Query: 986 HAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLV 1045
HAG+ R +R LVE+ F I+ +V+T TL+ G+N PA V+ R + ++D ++
Sbjct: 301 HAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWR--YSDFGME--- 355
Query: 1046 STATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLI 1105
+ ++V QMLGRAGRP+YD GEG+++
Sbjct: 356 --------------------------------RIPIIEVHQMLGRAGRPKYDEVGEGIIV 383
Query: 1106 TNHSE----LQYYL----SLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGY 1157
+ + + +Y+ L QL ES + S++ ++ A TV+ + ++ Y
Sbjct: 384 STSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALI-ATFGYSTVEEILKFISNTFY 442
Query: 1158 TY 1159
Y
Sbjct: 443 AY 444
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 89/235 (37%), Gaps = 82/235 (34%)
Query: 486 QSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545
Q+ KS + +N L+ PT +GKT +A + M+ I + G K +Y+ P+
Sbjct: 28 QAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRI---LTQGG-------KAVYIVPL 77
Query: 546 RSLVQ---------------------------EMVGNFG--------------------- 557
++L + E +G +
Sbjct: 78 KALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIK 137
Query: 558 ------KDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLR 610
DEIHL+ +RG LE ++A + +++GLSAT+ N +++A L
Sbjct: 138 DVKILVADEIHLIGSRDRGATLEVILAHMLGK-------AQIIGLSATIGNPEELAEWLN 190
Query: 611 IKPETGLFYFDNSFRPVALEQ----QYIGVTEKKALKRFQVMNDIVYEKVMEHAG 661
+ + +RPV L + Q E ++ RF ++VY+ + + G
Sbjct: 191 AE------LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKG 239
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 138/311 (44%), Gaps = 75/311 (24%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DEIHL+ +RGP LE +IA+ + + ++L+GLSAT+ N K +A L + T
Sbjct: 141 DEIHLIDSPDRGPTLEMVIAK----MRSKNPGMQLIGLSATIGNPKVLAGWLDAELVT-- 194
Query: 874 FYFDNSFRPVALEQ-----QYIGVTE-----KKALKRFQVMNDIVYEKVMEHAGRNQLLV 923
+S+RPV L Q I E K+ K + +N + + + E Q LV
Sbjct: 195 ----SSWRPVDLRQGVFYDNRIQFAERMRPVKQVSKNYDDLN-LCLDTIAEGG---QCLV 246
Query: 924 FVHSRKET----GKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLP 979
FV SR+ + A AI+ + L EG+ + E+++T A V G
Sbjct: 247 FVSSRRNAEAFAKRAAGAIKSEDAALAACAERLLEGTPT-EMVKTLAACVAKGA------ 299
Query: 980 YGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADR 1039
A HHAG++R +R++VE+ F ++ + ST TLA G+NLPA V+ R + +
Sbjct: 300 ---AFHHAGLSRKERSIVEEAFRKNLLKCISSTPTLAAGLNLPARRVIIRDYLRFSAGEG 356
Query: 1040 HIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTK 1099
+ VS + QM GRAGRP+ D
Sbjct: 357 MQPIPVS------------------------------------EYRQMAGRAGRPRLDPY 380
Query: 1100 GEGVLITNHSE 1110
GE VLI +E
Sbjct: 381 GEAVLIAKEAE 391
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 78/198 (39%), Gaps = 73/198 (36%)
Query: 486 QSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545
Q+ + L +NLL+ PT +GKT +A + M +HI G K +Y+ P+
Sbjct: 28 QAACVERGLLDGKNLLVAIPTASGKTLIAEMAM----HRHIANGG-------KCLYIVPL 76
Query: 546 RSLVQEMVGNFGK----------------------------------------------- 558
++L E FG
Sbjct: 77 KALASEKYEEFGNKGVKVGLSTGDLDRRDDALGKNDIIVATSEKVDSLLRNGARWIPDIT 136
Query: 559 ----DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKP 613
DEIHL+ +RGP LE +IA+ + + ++L+GLSAT+ N K +A L +
Sbjct: 137 LVVIDEIHLIDSPDRGPTLEMVIAK----MRSKNPGMQLIGLSATIGNPKVLAGWLDAEL 192
Query: 614 ETGLFYFDNSFRPVALEQ 631
T +S+RPV L Q
Sbjct: 193 VT------SSWRPVDLRQ 204
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 143/311 (45%), Gaps = 71/311 (22%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DEIHL+ D ERG LE ++ + ++NI A ++VGLSAT+ N +++A L K T
Sbjct: 143 DEIHLIGDNERGGTLEVILTK-LKNINA-----QIVGLSATVGNPEEIANWLNAKLVT-- 194
Query: 874 FYFDNSFRPVAL--------EQQYIGV--TEKKALKRFQV-----MNDIVYEKVMEHAGR 918
+ +RPV L E YI ++KK+ K + + D++ + V E +
Sbjct: 195 ----DEWRPVELKKGIYLENEINYINNQDSQKKSFKAVKSISRNNLTDLIVDSVNE---K 247
Query: 919 NQLLVFVHS-RKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDL 977
L+F +S R G++ + L K L + +L T + K+ L +
Sbjct: 248 GSCLIFCNSKRNAVGESKKHNLTKYLSKAELNDLNSISEEILSILETPTETCKS--LSEC 305
Query: 978 LPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFA 1037
+ G A HHAG+T +H R VE+ F
Sbjct: 306 IKKGVAFHHAGLTY------------QH-----------------------RKAVEEGFR 330
Query: 1038 DRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYD 1097
++ I+V+ T TL+ G+NLP II+ + Y+ + +++ L++ Q +GRAGRP D
Sbjct: 331 NKVIKVICCTPTLSAGLNLPCRRAIIRDIRRYS--QNGLIDIPKLEIHQCIGRAGRPGLD 388
Query: 1098 TKGEGVLITNH 1108
GEG+++ +
Sbjct: 389 PYGEGIILAKN 399
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 13/74 (17%)
Query: 559 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 617
DEIHL+ D ERG LE ++ + ++NI A ++VGLSAT+ N +++A L K T
Sbjct: 143 DEIHLIGDNERGGTLEVILTK-LKNINA-----QIVGLSATVGNPEEIANWLNAKLVT-- 194
Query: 618 FYFDNSFRPVALEQ 631
+ +RPV L++
Sbjct: 195 ----DEWRPVELKK 204
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 494 LESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553
L+ +N L+C PT +GKT + + +L + D N K +++ P+++L E
Sbjct: 29 LDKSKNFLICIPTASGKTLIGEMALLNHV-----LDENYNLTGKKGLFIVPLKALASEKF 83
Query: 554 GNFGK 558
F K
Sbjct: 84 DEFQK 88
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 133/517 (25%), Positives = 212/517 (41%), Gaps = 105/517 (20%)
Query: 812 FGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPE 870
F DE H ++D +RGPV+E + R R + T ++ LSAT+ N KDVA L
Sbjct: 145 FVLDEFHYMNDGDRGPVVEGVAVRAKR--QGT-----ILALSATIGNAKDVAKWLNAD-- 195
Query: 871 TGLFYFDNSFRPVALEQQYIGVTEKKA---------LKRFQVMNDIVYEKVMEHAGRNQL 921
++RPV L++ + KK + + + I+ + + Q+
Sbjct: 196 ----IVATNWRPVPLKEGVMYSEGKKGHIILYSDGTTNKLKGDDPIIAYTLDILSKGGQV 251
Query: 922 LVFVHSRKETGKTARAIRD-MCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPY 980
+VF SRK TA I M K + L EV +A + L +L+
Sbjct: 252 IVFRSSRKYAETTAMKISQYMNFVKLDDKKLLETAERIKEV--EDAGSNEKEVLYNLIVR 309
Query: 981 GFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRH 1040
G A HHAG+++ R ++E F +R I+V+ +T TLA GVNLPA VV + D++ R
Sbjct: 310 GVAFHHAGLSKGLRDIIEASFRERIIKVITATPTLAAGVNLPARAVV----IGDIY--RF 363
Query: 1041 IQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100
+ +V + + ++ QM GRAGRP YD G
Sbjct: 364 NRKIVGFTEM----------------------------ISTMEYRQMSGRAGRPGYDNHG 395
Query: 1101 EG-VLITNHSELQYYLSLLNHQ--LPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGY 1157
E +L+ + E+ + H P+ES++ ++ P VL + + +
Sbjct: 396 EAIILVRSKVEVDKVIDKYLHSDIEPIESKLGAEGPFF---SFVLSLIASEGE------- 445
Query: 1158 TYLYIRMLRAPNLYGISHDALK---EDPLLECHRADLIHTAALH-LERSGLIKYDRKSGH 1213
I+ D LK ED +L + A+ L ++ IK +
Sbjct: 446 ---------------ITEDRLKDYVEDTMLSKQLVRKYYNNAIDWLSKNEFIKSN--DDR 488
Query: 1214 MQVTELGRIASHYYCTHETMATYNQLLKPTLS--EIELFRVFSLSGEFRHITV-REEEKL 1270
+Q+T+ GR S Y T T L+ S +I F + + + + ++V R EE
Sbjct: 489 LQLTKFGRRVSDLYLNPFTAVTIKNYLERAESPCDIAYFHLIAYTPDGPLVSVGRNEEDA 548
Query: 1271 ELQKLMERAPIPIKESTDEPSAKVNILLQAYISQLKL 1307
L L + I E DE + YIS LK+
Sbjct: 549 LLDNL--DCELIIDEPDDE------LEFSNYISALKV 577
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 479 FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFK 538
K LN Q+ K L D+ LL+ PT +GKT +A L M+ + +N G K
Sbjct: 24 IKKLNPPQTEAVKKGLIEDKRLLITTPTASGKTLMAELGMISHL---LNKGG-------K 73
Query: 539 IIYVAPMRSLVQEMVGNF 556
IYV P+R+L E F
Sbjct: 74 AIYVTPLRALTSEKYSTF 91
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon RC-I
GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 115/474 (24%), Positives = 199/474 (41%), Gaps = 99/474 (20%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DE+HL+ RGP LE +A+ +R I +++++ LSAT+ N K +A +
Sbjct: 149 DEVHLIDSPNRGPTLEVTLAK-LRKINV---NLQILALSATIGNAKALAKWMDAA----- 199
Query: 874 FYFDNSFRPVALEQQYIGVTEKKAL---KRFQVMNDIVYEKV-------MEHAGRNQLLV 923
+ +RP L++ GV +A+ K + +N+ ++V +E G Q LV
Sbjct: 200 -LVQSEWRPTTLKE---GVFYGRAITFKKEKRTVNNAGPDEVNSLVADTLEEGG--QCLV 253
Query: 924 FVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLR-TEADQVKNGELRDLLPYGF 982
F ++RK + A+ + +K + + +VLR E D + +L + + G
Sbjct: 254 FANTRKSSESIAQKVARSLSKKLQPAEKEQLAKLKQDVLRHAETDTCE--KLAECVGNGV 311
Query: 983 AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQ 1042
A HHAG+ R +VED F ++V+ T TLA G+NLP
Sbjct: 312 AFHHAGLKGEHRRIVEDGFRQNILKVIACTPTLAAGLNLP-------------------- 351
Query: 1043 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102
A VII+ + ++ G V + L+ QM GRAGRP+ D GE
Sbjct: 352 ---------------ARRVIIRDYKRFDVNYGS-VPIPVLEYKQMAGRAGRPRLDPYGEA 395
Query: 1103 VLIT-NHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLK-DAVTWLGYTYL 1160
VLI N+ E + L+ + + + + I+ LGT ++ A++ + +
Sbjct: 396 VLIAKNYDE---FGELMENYINADPEHITS---------KLGTEPAMRAHALSAVATDFC 443
Query: 1161 YIRMLRAPNLYGISHDALKEDPLLECHRADLIHTA----ALHLERSGLIKYDRKSGHMQV 1216
R A + R DL H LE + +I + K G ++
Sbjct: 444 RSRQ---------DLKAFMDTTFFAYQRGDLSHVIDNVLNFLLEENMII--ESKGGSLKA 492
Query: 1217 TELGRIASHYYCTHETMATYNQLL-----KPTLSEIELFRVFSLSGEFRHITVR 1265
T+LG + S Y + A + L +P ++E L + + + + + +R
Sbjct: 493 TDLGSLVSKLYIDPLSAALIAEGLEKAKKRPDVAEFGLLHLICSTPDVKSLYLR 546
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 17/89 (19%)
Query: 474 HAFEDFKTLNRI------QSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHIN 527
A +DF T + I Q+ + L +NLL PT +GKT +A + ML+ I
Sbjct: 10 QALKDFYTGSGIPELYPPQAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKSI----- 64
Query: 528 ADGTINADEFKIIYVAPMRSLVQEMVGNF 556
A+ K IY+ P+++L E F
Sbjct: 65 ------AEGGKAIYIVPLKALASEKYDRF 87
>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1401 PE=3 SV=1
Length = 808
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 124/270 (45%), Gaps = 56/270 (20%)
Query: 769 VALLCMLQEIGKHINADGTINADEFKIIYVAP---MRSLVQEMVGNFGKDEIHLLH-DER 824
V+L L IGK ++ + +++AD Y +R+ + +G DEIH L+ +ER
Sbjct: 287 VSLRVGLGRIGKKVDVETSLDADIIVGTYEGIDYLIRTKRLKDIGTVVIDEIHSLNLEER 346
Query: 825 GPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVA 884
G L+ LI R + ++ + + LSAT+ N K++A L K L ++ RPV
Sbjct: 347 GARLDGLIGR----LRFLFKEAQKIYLSATIGNPKELAKQLNAK----LVLYNG--RPVP 396
Query: 885 LEQQYIGVTEKKALKRFQVMNDIV---YEKVMEHAGRNQLLVFVHSRKETGKTARAIRDM 941
LE+ I K + ++ +IV ++ + + R Q L+F +SRK A+A++
Sbjct: 397 LERHIIFC--KNDFAKLNIIKEIVKREWQNISKFGYRGQCLIFTYSRKRAEYLAKALKSK 454
Query: 942 CLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLF 1001
++ + +H GM + R VED F
Sbjct: 455 GIKAE-------------------------------------FYHGGMEYIKRRKVEDDF 477
Query: 1002 ADRHIQVLVSTATLAWGVNLPAHTVVDRTL 1031
A++ IQ +V+TA L+ GV+ PA TV+ +L
Sbjct: 478 ANQKIQCVVTTAALSAGVDFPASTVILESL 507
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 1027 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQ 1086
+ R VED FA++ IQ +V+TA L+ GV+ PA TVI++ + W L + Q
Sbjct: 468 IKRRKVEDDFANQKIQCVVTTAALSAGVDFPASTVILESLAM----GADW--LNPAEFQQ 521
Query: 1087 MLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLPVESQMISKLPD 1134
M GRAGR G+ L+ + +Y+ + N + V ++++ +P+
Sbjct: 522 MCGRAGRKGMHEIGKVYLLVEIGK-KYHAKMENTEDEVAFKLLNAVPE 568
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain DSM
6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 129/306 (42%), Gaps = 71/306 (23%)
Query: 815 DEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DEIHLL + RGP LE I + +R DV++V LSAT+ N +++A L G
Sbjct: 144 DEIHLLDSKNRGPTLEVTITKLMR----LNPDVQVVALSATVGNAREMADWL------GA 193
Query: 874 FYFDNSFRPVALEQ--------QYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFV 925
+ +RP L + + G +K + R + +D V + Q LVF
Sbjct: 194 ALVLSEWRPTDLHEGVLFGDAINFPG--SQKKIDRLE-KDDAVNLVLDTIKAEGQCLVFE 250
Query: 926 HSRKETG---KTARAIRDMCLEKDTLGQFLREGSASMEVLRT-EADQVKNGELRDLLPYG 981
SR+ KTA + L+ D + ++ + EV T E D L + + G
Sbjct: 251 SSRRNCAGFAKTASSKVAKILDNDIM---IKLAGIAEEVESTGETDTAI--VLANCIRKG 305
Query: 982 FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTL--VEDLFADR 1039
A HHAG+ R LVE+ F I+V+ ST TLA G+NLPA V+ R+ + F +
Sbjct: 306 VAFHHAGLNSNHRKLVENGFRQNLIKVISSTPTLAAGLNLPARRVIIRSYRRFDSNFGMQ 365
Query: 1040 HIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTK 1099
I V L+ QM GRAGRP D
Sbjct: 366 PIPV--------------------------------------LEYKQMAGRAGRPHLDPY 387
Query: 1100 GEGVLI 1105
GE VL+
Sbjct: 388 GESVLL 393
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 75/199 (37%), Gaps = 72/199 (36%)
Query: 468 LPRYVQHAFED--FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKH 525
+PR + +ED K L Q+ + L +NLL PT +GKT +A L M+ K
Sbjct: 8 IPRDIIGFYEDSGIKELYPPQAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMI----KA 63
Query: 526 INADGTINADEFKIIYVAPMRSLVQEMVGNFGK--------------------------- 558
I G K +Y+ P+R+L E F +
Sbjct: 64 IREGG-------KALYIVPLRALASEKFERFKELAPFGIKVGISTGDLDSRADWLGVNDI 116
Query: 559 -------------------DEI--------HLLHDE-RGPVLEALIARTIRNIEATQEDV 590
DEI HLL + RGP LE I + +R DV
Sbjct: 117 IVATSEKTDSLLRNGTSWMDEITTVVVDEIHLLDSKNRGPTLEVTITKLMR----LNPDV 172
Query: 591 RLVGLSATLPNYKDVATLL 609
++V LSAT+ N +++A L
Sbjct: 173 QVVALSATVGNAREMADWL 191
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 137/320 (42%), Gaps = 79/320 (24%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLL-------R 866
DE+HL+ +RGP LE +++ R + Q ++ LSAT+ N ++A L
Sbjct: 144 DEVHLIDSPDRGPTLEITLSKLRRMNPSCQ----VLALSATVGNADELAAWLDAELVLSE 199
Query: 867 IKPE--------TGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGR 918
+P G+FY + +PV T+ +A+ ++V + + E
Sbjct: 200 WRPTDLMEGVFYNGIFYCKDKEKPVGQP------TKDEAV-------NLVLDTIKEGG-- 244
Query: 919 NQLLVFVHSRKET-GKTARAIRDMCLEKDTLGQFLREGSASM--EVLRTEADQVKNGELR 975
Q LVF SRK G +A+ + K TL RE A + E++ V + L
Sbjct: 245 -QCLVFESSRKNCMGFAKKAVSAV---KKTLSNEDRETLAGIADEIIENSETDVSS-VLA 299
Query: 976 DLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDL 1035
+ G A HHAG+T R LVE+ F + I+++ ST TLA G+NLP
Sbjct: 300 TCVRSGTAFHHAGLTTPLRELVENGFREGRIKIISSTPTLAAGLNLP------------- 346
Query: 1036 FADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ 1095
A VII+ + Y+ + G + L+ QM GRAGRP+
Sbjct: 347 ----------------------ARRVIIRSYRRYSSDSGMQ-PIPVLEYKQMAGRAGRPR 383
Query: 1096 YDTKGEGVLITNHSELQYYL 1115
D GE VL+ E +L
Sbjct: 384 LDPYGEAVLLAKSYEEFVFL 403
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 468 LPRYVQHAFEDFKTLNRI--QSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKH 525
LP ++ +E+ L Q+ + L +NLL PT +GKT +A L ML+ +
Sbjct: 8 LPDEIKRFYENSGILELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSV--- 64
Query: 526 INADGTINADEFKIIYVAPMRSLVQEMVGNF 556
+N K +Y+ P+R+L E F
Sbjct: 65 LNGG--------KALYIVPLRALASEKFRRF 87
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain Fusaro
/ DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 130/304 (42%), Gaps = 67/304 (22%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRI------ 867
DE+HL+ +RGP LE +A+ + +++ LSAT+ N ++A L
Sbjct: 144 DEVHLIDSPDRGPTLEVTLAK----LRKMNPSCQILALSATVGNADELAVWLEAELVVSE 199
Query: 868 -KPETGL--FYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVF 924
+P L +F+ +F E+ T+ +A+ ++ + + + Q LVF
Sbjct: 200 WRPTELLEGVFFNGTFYCKDREKTVEQSTKDEAV-------NLALDTLKKDG---QCLVF 249
Query: 925 VHSRKETGKTARAIRDMCLEKDTLGQFLREGSASM--EVL-RTEADQVKNGELRDLLPYG 981
SRK A A + K TL R A + E+L +E D N L + G
Sbjct: 250 ESSRKNC--MAFAKKAASTVKKTLSAEDRNALAGIADEILENSETDTSTN--LAVCIRSG 305
Query: 982 FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHI 1041
A HHAG+T R LVED F I+++ ST TLA G+NLP
Sbjct: 306 TAFHHAGLTTPLRELVEDGFRAGRIKLISSTPTLAAGLNLP------------------- 346
Query: 1042 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101
A VII+ + Y+ E G + L+ QM GRAGRP+ D GE
Sbjct: 347 ----------------ARRVIIRNYRRYSSEDGMQ-PIPVLEYKQMAGRAGRPRLDPYGE 389
Query: 1102 GVLI 1105
VL+
Sbjct: 390 AVLV 393
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 486 QSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545
Q+ + L NLL PT +GKT +A L ML K I A G K +Y+ P+
Sbjct: 28 QAEAVEKGLLEGRNLLAAIPTASGKTLLAELAML----KSILAGG-------KALYIVPL 76
Query: 546 RSLVQEMVGNF 556
R+L E F
Sbjct: 77 RALASEKFRRF 87
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 136/315 (43%), Gaps = 69/315 (21%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLL-------R 866
DE+HL+ +RGP LE +A+ + +++ LSAT+ N ++A L
Sbjct: 144 DEVHLIDSADRGPTLEVTLAK----LRKMNPFCQILALSATVGNADELAAWLDAELVLSE 199
Query: 867 IKPE---TGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLV 923
+P G+F FD +F E+ T+ +A+ ++V + + E Q LV
Sbjct: 200 WRPTDLMEGVF-FDGTFFCKDKEKLIEQPTKDEAI-------NLVLDTLREG---GQCLV 248
Query: 924 FVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASM--EVL-RTEADQVKNGELRDLLPY 980
F SRK A+ K TL +E A + E+L +E D L +
Sbjct: 249 FESSRKNCMGFAKKATSAV--KKTLSAEDKEKLAGIADEILENSETDTASV--LASCVRA 304
Query: 981 GFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRH 1040
G A HHAG+T P R LVE F + +
Sbjct: 305 GTAFHHAGLTS------------------------------PL-----RELVETGFREGY 329
Query: 1041 IQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100
++++ ST TLA G+NLPA VII+ + Y+ + G + L+ QM GRAGRP+ D G
Sbjct: 330 VKLISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQ-PIPVLEYKQMAGRAGRPRLDPYG 388
Query: 1101 EGVLITNHSELQYYL 1115
E VL+ E +L
Sbjct: 389 EAVLLAKSYEELLFL 403
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 468 LPRYVQHAFED--FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKH 525
LP V+ +E+ L Q+ + L +NLL PT +GKT +A L ML K
Sbjct: 8 LPDEVKRFYENSGIPELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAML----KS 63
Query: 526 INADGTINADEFKIIYVAPMRSLVQEMVGNF 556
+ A G K +Y+ P+R+L E F
Sbjct: 64 VLAGG-------KALYIVPLRALASEKFRRF 87
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 135/338 (39%), Gaps = 92/338 (27%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLR--IKPET 871
DE+H + D +RG V E + + +R + LSATLPN A + K
Sbjct: 238 DEVHYMRDKDRGVVWEETLI-------LLPDAIRFIFLSATLPNALQFARWISEIHKQPC 290
Query: 872 GLFYFDNSFRPVALEQ---------QYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQ-- 920
+ Y D +RP L+ Y+ V EK +F+ N +V++H+ R +
Sbjct: 291 HVVYTD--YRPTPLQHFIYPQGADGIYMLVDEKN---KFKTENFKKVLEVLDHSTRQENY 345
Query: 921 ---------------------------LLVFVHSRKETGKTARAIRDMCLEKDTLGQFLR 953
++VF S+KE A + L + +
Sbjct: 346 SKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEINAHQFGKLDLNDTENKELVT 405
Query: 954 E--GSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVS 1011
E SA ++ + + E+R LL G IHH+G+
Sbjct: 406 EIFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGL---------------------- 443
Query: 1012 TATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 1071
LP + + LVE LF + +++L +T T + G+N+PA TV+ Q ++
Sbjct: 444 ---------LP----ILKELVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFSG 490
Query: 1072 EKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS 1109
RW+ G + +QM GRAGR DTKG ++I + S
Sbjct: 491 NNFRWLTSG--EYMQMSGRAGRRGIDTKGLSIVILDQS 526
>sp|Q5R660|SEC63_PONAB Translocation protein SEC63 homolog OS=Pongo abelii GN=SEC63 PE=2
SV=1
Length = 761
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 1589 LDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKR--LTLQQKAKIKLDFVAP- 1645
L+ + ++T PV + ++P++++E WW+ I D K +L+S+ TL+ +++L F AP
Sbjct: 629 LETKSKITHPVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVCTLKDTEEVELKFPAPG 688
Query: 1646 NPGHHSYALYFMSDAYLGCDQEYKFSIDVSE 1676
PG++ Y ++ SD+Y+G DQ ++V E
Sbjct: 689 KPGNYQYTVFLRSDSYMGLDQIKPLKLEVHE 719
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 13/121 (10%)
Query: 1485 SPAVAAME----VAQMITQAMWSKDSYLKQLPHFNADIIKRCT---EKGVETVFDIMELE 1537
+P +A++E ++QM Q + S L QLPH D ++R + + ++T+ D++ L+
Sbjct: 357 APTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLK 416
Query: 1538 DDDRLRLLQ-LSESQLADVARFCNRYP--NIELSYEVL---NKDRISSGSSVNVVVNLDR 1591
+ DR LL L + + +V +P +++ +VL + + I+ GS V V+V L R
Sbjct: 417 ESDRHTLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTVLVKLTR 476
Query: 1592 E 1592
+
Sbjct: 477 Q 477
>sp|Q8VHE0|SEC63_MOUSE Translocation protein SEC63 homolog OS=Mus musculus GN=Sec63 PE=1
SV=4
Length = 760
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 1589 LDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKR--LTLQQKAKIKLDFVAP- 1645
L+ + ++T PV + ++P++++E WW+ I D K +L+S+ TL+ +++L F AP
Sbjct: 628 LETKSKITHPVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVCTLKDTEEVELKFPAPG 687
Query: 1646 NPGHHSYALYFMSDAYLGCDQEYKFSIDVSE 1676
PG++ Y ++ SD+Y+G DQ ++V E
Sbjct: 688 KPGNYQYTVFLRSDSYMGLDQIKPLKLEVHE 718
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 13/121 (10%)
Query: 1485 SPAVAAME----VAQMITQAMWSKDSYLKQLPHFNADIIKRCTEK---GVETVFDIMELE 1537
+P +A++E ++QM Q + S L QLPH D ++R + ++T+ D++ L+
Sbjct: 357 APTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLK 416
Query: 1538 DDDRLRLLQ-LSESQLADVARFCNRYP--NIELSYEVL---NKDRISSGSSVNVVVNLDR 1591
+ DR LL L + + +V +P +++ +VL + + I+ GS V V+V L R
Sbjct: 417 ESDRHSLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTVLVKLTR 476
Query: 1592 E 1592
+
Sbjct: 477 Q 477
>sp|Q9UGP8|SEC63_HUMAN Translocation protein SEC63 homolog OS=Homo sapiens GN=SEC63 PE=1
SV=2
Length = 760
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 1589 LDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKR--LTLQQKAKIKLDFVAP- 1645
L+ + ++T PV + ++P++++E WW+ I D K +L+S+ TL+ +++L F AP
Sbjct: 628 LETKSKITHPVYSLYFPEEKQEWWWLYIADRKEQTLISMPYHVCTLKDTEEVELKFPAPG 687
Query: 1646 NPGHHSYALYFMSDAYLGCDQEYKFSIDVSE 1676
PG++ Y ++ SD+Y+G DQ ++V E
Sbjct: 688 KPGNYQYTVFLRSDSYMGLDQIKPLKLEVHE 718
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 13/121 (10%)
Query: 1485 SPAVAAME----VAQMITQAMWSKDSYLKQLPHFNADIIKRCTEK---GVETVFDIMELE 1537
+P +A++E ++QM Q + S L QLPH D ++R + ++T+ D++ L+
Sbjct: 357 APTLASLENCMKLSQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLK 416
Query: 1538 DDDRLRLLQ-LSESQLADVARFCNRYP--NIELSYEVL---NKDRISSGSSVNVVVNLDR 1591
+ DR LL L + + +V +P +++ +VL + + I+ GS V V+V L R
Sbjct: 417 ESDRHTLLHFLEDEKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTVLVKLTR 476
Query: 1592 E 1592
+
Sbjct: 477 Q 477
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 138/346 (39%), Gaps = 100/346 (28%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT-LLRIKPETG 872
DE+H + D ERG V E I + VR V LSAT+PN + A + +I +
Sbjct: 262 DEVHYMRDKERGVVWEETII-------LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 314
Query: 873 LFYFDNSFRPVALEQQ---------YIGVTEKKALK--RFQ-----VMNDI--------- 907
+ N FRP L+ Y+ V EK + FQ + N I
Sbjct: 315 HIVYTN-FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDS 373
Query: 908 --------------------VYE--KVMEHAGRNQLLVFVHSRKETGKTARAIRDMCL-- 943
+Y+ K++ N ++VF S+++ + A + +
Sbjct: 374 RGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNS 433
Query: 944 --EKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLF 1001
EK+ L + A + E Q+K+ + LL G IHH+G+ + + ++E LF
Sbjct: 434 DDEKEALTKIFNNAIALLPETDRELPQIKH--ILPLLRRGIGIHHSGLLPILKEVIEILF 491
Query: 1002 ADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTV 1061
+ ++VL +T T + G+N+PA TV V T+ W
Sbjct: 492 QEGFLKVLFATETFSIGLNMPAKTV------------------VFTSVRKW--------- 524
Query: 1062 IIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITN 1107
G Q RWV G + +QM GRAGR D +G +++ +
Sbjct: 525 --DGQQF------RWVSGG--EYIQMSGRAGRRGLDDRGIVIMMID 560
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 625,371,886
Number of Sequences: 539616
Number of extensions: 27844766
Number of successful extensions: 91693
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 218
Number of HSP's that attempted gapping in prelim test: 89519
Number of HSP's gapped (non-prelim): 1503
length of query: 1689
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1558
effective length of database: 120,879,763
effective search space: 188330670754
effective search space used: 188330670754
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)