Query psy14582
Match_columns 1689
No_of_seqs 824 out of 4907
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 23:33:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0951|consensus 100.0 4E-198 8E-203 1811.5 67.2 1048 172-1466 1-1056(1674)
2 KOG0952|consensus 100.0 1E-140 3E-145 1294.1 46.3 799 404-1466 35-835 (1230)
3 PRK02362 ski2-like helicase; P 100.0 2.2E-84 4.9E-89 854.9 51.7 659 467-1414 7-704 (737)
4 PRK00254 ski2-like helicase; P 100.0 9.4E-81 2E-85 818.6 53.1 655 467-1414 7-699 (720)
5 COG1204 Superfamily II helicas 100.0 5.4E-82 1.2E-86 812.1 24.4 726 468-1467 16-753 (766)
6 KOG0951|consensus 100.0 8.3E-79 1.8E-83 753.3 38.1 496 668-1249 1021-1626(1674)
7 PRK01172 ski2-like helicase; P 100.0 1.8E-76 3.8E-81 775.2 49.3 641 467-1412 7-664 (674)
8 smart00611 SEC63 Domain of unk 100.0 2.4E-52 5.2E-57 500.0 31.0 304 1214-1673 2-312 (312)
9 PF02889 Sec63: Sec63 Brl doma 100.0 2E-50 4.4E-55 484.0 31.2 302 1216-1672 1-314 (314)
10 COG1202 Superfamily II helicas 100.0 1.2E-44 2.7E-49 422.5 36.1 563 467-1356 200-829 (830)
11 KOG0330|consensus 100.0 2.8E-42 6E-47 389.6 25.3 343 467-1116 67-414 (476)
12 KOG4434|consensus 100.0 1.1E-40 2.3E-45 369.6 25.3 305 1242-1678 9-483 (520)
13 KOG0950|consensus 100.0 1.1E-39 2.3E-44 404.0 32.7 530 809-1401 342-934 (1008)
14 PRK13767 ATP-dependent helicas 100.0 4.2E-39 9E-44 428.7 38.7 429 465-1164 15-460 (876)
15 KOG0331|consensus 100.0 5.6E-40 1.2E-44 396.7 25.7 354 464-1113 94-452 (519)
16 TIGR03817 DECH_helic helicase/ 100.0 2.4E-38 5.3E-43 413.6 37.7 360 467-1114 20-391 (742)
17 PTZ00110 helicase; Provisional 100.0 9.3E-39 2E-43 406.9 32.1 360 452-1116 125-491 (545)
18 PLN00206 DEAD-box ATP-dependen 100.0 2E-38 4.2E-43 402.9 32.9 362 453-1118 117-484 (518)
19 KOG0338|consensus 100.0 4.1E-39 8.8E-44 372.6 21.6 367 467-1133 187-557 (691)
20 KOG0947|consensus 100.0 4.1E-39 9E-44 393.6 21.8 274 809-1136 404-753 (1248)
21 COG0513 SrmB Superfamily II DN 100.0 6.6E-38 1.4E-42 395.4 31.8 346 467-1116 35-388 (513)
22 PRK10590 ATP-dependent RNA hel 100.0 9.1E-38 2E-42 392.1 31.9 348 467-1115 7-358 (456)
23 KOG0948|consensus 100.0 1.6E-39 3.5E-44 388.6 14.2 279 809-1137 236-569 (1041)
24 KOG0333|consensus 100.0 5.6E-38 1.2E-42 364.9 26.5 387 433-1116 221-631 (673)
25 PRK11776 ATP-dependent RNA hel 100.0 1.3E-37 2.9E-42 392.0 32.4 341 467-1114 10-354 (460)
26 COG1201 Lhr Lhr-like helicases 100.0 4.8E-37 1.1E-41 390.1 37.1 454 465-1233 5-471 (814)
27 PRK04837 ATP-dependent RNA hel 100.0 1.4E-37 3E-42 387.8 30.7 352 467-1116 14-369 (423)
28 KOG0952|consensus 100.0 4.2E-39 9.2E-44 398.7 16.2 312 670-997 803-1229(1230)
29 PRK04537 ATP-dependent RNA hel 100.0 5.1E-37 1.1E-41 392.1 34.5 350 467-1113 15-368 (572)
30 KOG0340|consensus 100.0 8.7E-37 1.9E-41 341.5 25.7 347 467-1116 13-368 (442)
31 COG4581 Superfamily II RNA hel 100.0 8.7E-37 1.9E-41 391.5 27.2 299 809-1160 230-587 (1041)
32 KOG0345|consensus 100.0 3.9E-36 8.5E-41 346.7 28.1 355 468-1119 13-373 (567)
33 PRK11192 ATP-dependent RNA hel 100.0 3.7E-36 8E-41 376.5 30.6 347 467-1116 7-359 (434)
34 PRK11634 ATP-dependent RNA hel 100.0 9.4E-36 2E-40 382.3 32.3 343 467-1115 12-358 (629)
35 PLN03137 ATP-dependent DNA hel 100.0 3.9E-35 8.4E-40 378.0 37.4 213 809-1121 582-799 (1195)
36 KOG0342|consensus 100.0 5.7E-36 1.2E-40 348.3 26.8 355 467-1125 88-451 (543)
37 PRK01297 ATP-dependent RNA hel 100.0 2E-35 4.4E-40 373.2 34.2 345 467-1111 93-444 (475)
38 PTZ00424 helicase 45; Provisio 100.0 1.4E-35 3E-40 368.1 29.5 210 809-1117 171-382 (401)
39 PRK09751 putative ATP-dependen 100.0 9.1E-35 2E-39 390.3 32.2 296 809-1163 125-446 (1490)
40 KOG0343|consensus 100.0 5E-35 1.1E-39 341.3 25.6 357 469-1125 77-439 (758)
41 KOG0335|consensus 100.0 3.9E-35 8.4E-40 348.7 23.4 351 465-1110 78-445 (482)
42 KOG0348|consensus 100.0 1.3E-34 2.7E-39 337.3 25.3 384 467-1120 142-564 (708)
43 TIGR00614 recQ_fam ATP-depende 100.0 8.2E-34 1.8E-38 357.5 33.6 215 809-1120 128-344 (470)
44 KOG0326|consensus 100.0 4.2E-35 9.1E-40 322.6 15.8 334 469-1112 94-432 (459)
45 KOG0328|consensus 100.0 3E-34 6.5E-39 311.5 18.6 344 467-1116 33-380 (400)
46 KOG0336|consensus 100.0 6.6E-34 1.4E-38 321.1 21.7 352 467-1119 227-582 (629)
47 KOG0346|consensus 100.0 3E-33 6.6E-38 319.8 22.5 349 467-1112 25-413 (569)
48 TIGR01389 recQ ATP-dependent D 100.0 6.2E-32 1.3E-36 349.9 33.9 216 809-1123 128-345 (591)
49 PRK11057 ATP-dependent DNA hel 100.0 6.7E-32 1.5E-36 348.6 33.8 211 809-1121 140-355 (607)
50 KOG0341|consensus 100.0 1.7E-32 3.6E-37 307.8 23.7 368 441-1111 154-530 (610)
51 KOG0347|consensus 100.0 2E-33 4.3E-38 328.3 11.1 365 467-1119 187-580 (731)
52 KOG0332|consensus 100.0 3.5E-32 7.6E-37 306.1 20.4 211 809-1110 233-444 (477)
53 KOG0344|consensus 100.0 1.4E-31 3E-36 319.2 21.0 372 453-1116 128-502 (593)
54 KOG0339|consensus 100.0 1.4E-31 3.1E-36 309.5 19.3 364 452-1119 218-585 (731)
55 KOG0350|consensus 100.0 1.1E-30 2.3E-35 303.4 23.6 185 845-1120 360-551 (620)
56 KOG0334|consensus 100.0 6.7E-31 1.5E-35 331.0 22.3 347 467-1111 371-722 (997)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.8E-29 8.2E-34 326.7 34.2 322 809-1258 114-443 (819)
58 TIGR00580 mfd transcription-re 100.0 5.2E-29 1.1E-33 328.3 34.1 196 809-1109 574-770 (926)
59 PRK11664 ATP-dependent RNA hel 100.0 1.2E-28 2.6E-33 323.0 34.8 308 809-1241 117-430 (812)
60 PRK10689 transcription-repair 100.0 1.9E-28 4.1E-33 329.4 32.3 196 809-1109 723-919 (1147)
61 PRK10917 ATP-dependent DNA hel 100.0 6E-28 1.3E-32 315.1 32.5 202 809-1108 384-588 (681)
62 TIGR00643 recG ATP-dependent D 100.0 7.6E-28 1.6E-32 312.3 31.3 205 809-1108 358-565 (630)
63 KOG4284|consensus 100.0 3.8E-29 8.3E-34 295.6 16.9 208 809-1111 168-381 (980)
64 COG1111 MPH1 ERCC4-like helica 100.0 4E-27 8.6E-32 277.3 29.5 123 918-1116 366-490 (542)
65 COG1205 Distinct helicase fami 100.0 2E-27 4.4E-32 311.6 27.9 357 478-1115 67-429 (851)
66 KOG0327|consensus 100.0 3.2E-28 7E-33 278.1 16.3 342 467-1116 32-377 (397)
67 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.3E-26 5E-31 294.7 31.9 199 809-1105 172-388 (844)
68 PRK11131 ATP-dependent RNA hel 100.0 3.3E-26 7.1E-31 303.2 33.3 338 809-1270 187-534 (1294)
69 PHA02653 RNA helicase NPH-II; 99.9 2E-25 4.4E-30 285.5 35.3 218 809-1110 292-515 (675)
70 KOG0337|consensus 99.9 4.6E-27 9.9E-32 268.6 17.3 343 467-1116 27-375 (529)
71 COG0514 RecQ Superfamily II DN 99.9 6.9E-26 1.5E-30 279.6 26.0 212 809-1123 132-351 (590)
72 KOG0949|consensus 99.9 3.8E-26 8.3E-31 280.8 21.8 106 972-1123 955-1060(1330)
73 TIGR01587 cas3_core CRISPR-ass 99.9 2E-25 4.4E-30 272.9 25.2 201 809-1110 125-337 (358)
74 KOG0354|consensus 99.9 1.4E-24 3E-29 270.2 29.2 120 917-1111 412-531 (746)
75 TIGR03158 cas3_cyano CRISPR-as 99.9 1.2E-24 2.6E-29 264.5 27.2 170 809-1024 146-337 (357)
76 TIGR01967 DEAH_box_HrpA ATP-de 99.9 7.7E-24 1.7E-28 282.0 36.4 336 809-1269 180-524 (1283)
77 PRK12898 secA preprotein trans 99.9 5.7E-23 1.2E-27 258.8 30.5 166 847-1110 410-587 (656)
78 PRK05580 primosome assembly pr 99.9 1.3E-23 2.8E-28 273.4 25.2 265 809-1115 259-555 (679)
79 PRK09401 reverse gyrase; Revie 99.9 5.2E-23 1.1E-27 277.8 28.4 67 478-557 78-144 (1176)
80 PRK14701 reverse gyrase; Provi 99.9 3.5E-23 7.7E-28 284.3 26.1 190 844-1121 267-468 (1638)
81 PHA02558 uvsW UvsW helicase; P 99.9 4.1E-22 8.9E-27 252.9 29.3 106 917-1105 343-449 (501)
82 PRK09200 preprotein translocas 99.9 1.7E-21 3.7E-26 250.4 31.0 166 847-1110 365-542 (790)
83 KOG0352|consensus 99.9 4.8E-22 1E-26 226.9 22.6 214 809-1118 142-371 (641)
84 KOG0351|consensus 99.9 3.8E-22 8.2E-27 259.7 24.5 213 809-1121 386-604 (941)
85 TIGR00595 priA primosomal prot 99.9 1.2E-22 2.5E-27 255.9 17.7 251 809-1112 94-384 (505)
86 PRK13766 Hef nuclease; Provisi 99.9 3.2E-21 6.9E-26 258.5 29.1 117 917-1110 364-480 (773)
87 COG1643 HrpA HrpA-like helicas 99.9 6.2E-20 1.3E-24 236.5 34.8 325 809-1256 163-493 (845)
88 TIGR03714 secA2 accessory Sec 99.9 3.2E-20 7E-25 236.4 31.4 166 846-1110 360-538 (762)
89 TIGR01054 rgy reverse gyrase. 99.9 1.1E-20 2.4E-25 255.8 28.0 68 478-557 75-142 (1171)
90 KOG0349|consensus 99.9 6.3E-22 1.4E-26 225.4 13.1 111 917-1108 504-614 (725)
91 KOG0329|consensus 99.9 2.9E-22 6.2E-27 215.6 7.2 79 469-556 51-130 (387)
92 PRK09694 helicase Cas3; Provis 99.9 4.8E-20 1E-24 241.4 28.9 71 478-558 283-353 (878)
93 KOG0923|consensus 99.9 5.5E-20 1.2E-24 219.9 25.2 366 809-1303 379-752 (902)
94 KOG0353|consensus 99.9 2.5E-20 5.4E-25 209.2 20.6 168 809-1027 216-389 (695)
95 TIGR00603 rad25 DNA repair hel 99.8 2.5E-19 5.5E-24 228.5 30.9 110 917-1112 495-610 (732)
96 TIGR00963 secA preprotein tran 99.8 1.7E-19 3.7E-24 228.4 29.0 168 847-1110 342-518 (745)
97 KOG0922|consensus 99.8 2.4E-19 5.1E-24 218.3 28.0 359 790-1269 138-508 (674)
98 KOG0924|consensus 99.8 1.6E-18 3.5E-23 207.2 27.5 369 790-1276 443-822 (1042)
99 COG1200 RecG RecG-like helicas 99.8 7.2E-18 1.6E-22 207.9 27.1 204 809-1110 385-592 (677)
100 COG1061 SSL2 DNA or RNA helica 99.7 7.5E-17 1.6E-21 201.2 24.5 95 917-1094 282-376 (442)
101 PRK13104 secA preprotein trans 99.7 5.9E-16 1.3E-20 198.9 30.9 127 846-1022 380-509 (896)
102 COG1198 PriA Primosomal protei 99.7 4.4E-17 9.6E-22 207.7 19.6 382 479-1118 196-612 (730)
103 COG1197 Mfd Transcription-repa 99.7 8.1E-16 1.8E-20 199.3 29.7 196 809-1110 717-914 (1139)
104 COG5407 SEC63 Preprotein trans 99.7 5.8E-17 1.3E-21 186.3 17.0 206 1467-1673 295-546 (610)
105 PRK12906 secA preprotein trans 99.7 1E-15 2.2E-20 196.0 28.7 166 847-1110 377-554 (796)
106 COG4098 comFA Superfamily II D 99.7 4.5E-15 9.7E-20 167.5 27.7 208 809-1106 203-413 (441)
107 PRK12899 secA preprotein trans 99.7 7.9E-15 1.7E-19 188.0 32.0 67 478-556 86-155 (970)
108 KOG0926|consensus 99.7 1.7E-15 3.7E-20 184.5 24.3 351 809-1243 373-798 (1172)
109 COG1203 CRISPR-associated heli 99.7 1.1E-15 2.4E-20 201.4 25.0 204 809-1109 339-550 (733)
110 smart00611 SEC63 Domain of unk 99.7 1.6E-16 3.5E-21 190.9 14.4 127 1465-1591 110-236 (312)
111 KOG0920|consensus 99.7 1.5E-15 3.2E-20 195.3 21.6 316 809-1239 288-636 (924)
112 PRK12904 preprotein translocas 99.7 1.7E-14 3.6E-19 185.7 29.4 126 847-1022 367-495 (830)
113 cd00268 DEADc DEAD-box helicas 99.7 1.2E-15 2.5E-20 171.6 16.7 83 467-556 5-89 (203)
114 PRK11448 hsdR type I restricti 99.6 4.6E-14 1E-18 190.7 29.6 70 480-558 412-485 (1123)
115 TIGR01407 dinG_rel DnaQ family 99.6 3.1E-13 6.6E-18 182.0 37.2 218 845-1123 595-829 (850)
116 KOG0925|consensus 99.6 5.1E-14 1.1E-18 164.3 24.5 331 809-1267 160-503 (699)
117 PF02889 Sec63: Sec63 Brl doma 99.6 2.6E-15 5.6E-20 180.6 13.9 125 1465-1591 107-232 (314)
118 PRK13107 preprotein translocas 99.6 1.4E-13 3.1E-18 176.6 29.0 126 847-1022 386-514 (908)
119 PRK04914 ATP-dependent helicas 99.6 1.4E-13 3E-18 182.2 29.8 108 916-1106 491-600 (956)
120 PF00270 DEAD: DEAD/DEAH box h 99.6 1.6E-15 3.5E-20 164.9 8.1 66 483-558 1-66 (169)
121 TIGR00631 uvrb excinuclease AB 99.6 6.9E-13 1.5E-17 171.5 32.2 122 910-1111 433-555 (655)
122 KOG4150|consensus 99.5 3.5E-12 7.6E-17 150.5 24.5 226 809-1116 413-648 (1034)
123 PRK05298 excinuclease ABC subu 99.5 5E-12 1.1E-16 164.9 26.0 113 917-1109 445-557 (652)
124 COG0556 UvrB Helicase subunit 99.4 2.1E-11 4.6E-16 145.2 24.7 170 845-1108 386-556 (663)
125 TIGR00348 hsdR type I site-spe 99.4 8E-11 1.7E-15 154.2 28.1 68 482-558 239-315 (667)
126 PRK12900 secA preprotein trans 99.3 1.7E-10 3.8E-15 149.0 27.6 171 847-1110 535-712 (1025)
127 KOG0953|consensus 99.3 2.1E-11 4.6E-16 145.4 14.8 257 746-1121 181-488 (700)
128 PRK07246 bifunctional ATP-depe 99.3 1.4E-09 3E-14 145.1 33.7 65 476-553 241-308 (820)
129 PRK08074 bifunctional ATP-depe 99.3 7.7E-10 1.7E-14 150.0 30.2 220 846-1123 673-908 (928)
130 KOG0331|consensus 99.2 3.2E-10 6.9E-15 139.3 19.7 285 742-1095 117-433 (519)
131 PRK14873 primosome assembly pr 99.2 4.4E-10 9.5E-15 145.4 20.6 70 505-612 168-237 (665)
132 cd00079 HELICc Helicase superf 99.2 1.7E-10 3.6E-15 119.7 12.4 105 917-1105 27-131 (131)
133 PRK12326 preprotein translocas 99.1 1.8E-08 3.9E-13 127.6 30.0 62 481-556 78-139 (764)
134 KOG0330|consensus 99.1 1.7E-09 3.7E-14 124.9 17.0 60 1028-1102 338-397 (476)
135 PTZ00110 helicase; Provisional 99.1 2.5E-09 5.4E-14 137.7 20.0 290 742-1101 156-473 (545)
136 PLN03142 Probable chromatin-re 99.1 3.3E-08 7.1E-13 132.3 30.9 86 980-1110 512-600 (1033)
137 PLN00206 DEAD-box ATP-dependen 99.1 1.6E-09 3.4E-14 139.0 18.1 64 1023-1101 401-464 (518)
138 PF00271 Helicase_C: Helicase 99.1 3.3E-10 7.1E-15 107.2 8.0 73 978-1095 6-78 (78)
139 smart00487 DEXDc DEAD-like hel 99.1 1.3E-09 2.7E-14 120.7 13.6 69 478-556 5-74 (201)
140 PRK13103 secA preprotein trans 99.1 3.6E-08 7.8E-13 127.8 28.3 63 480-556 81-143 (913)
141 TIGR03817 DECH_helic helicase/ 99.1 1.5E-09 3.3E-14 143.6 16.4 61 1028-1103 317-377 (742)
142 PRK04837 ATP-dependent RNA hel 99.0 4.2E-10 9.1E-15 141.2 10.2 64 1024-1102 289-352 (423)
143 PRK10590 ATP-dependent RNA hel 99.0 6.3E-09 1.4E-13 131.7 20.1 59 1027-1100 282-340 (456)
144 PRK11192 ATP-dependent RNA hel 99.0 4.4E-09 9.6E-14 132.5 16.9 64 1023-1101 278-341 (434)
145 COG1110 Reverse gyrase [DNA re 99.0 2.8E-08 6.1E-13 126.8 23.2 67 478-557 80-146 (1187)
146 COG4096 HsdR Type I site-speci 99.0 1.7E-08 3.7E-13 127.3 20.6 72 478-558 162-237 (875)
147 COG1199 DinG Rad3-related DNA 99.0 4.3E-09 9.4E-14 139.4 15.4 71 478-558 12-85 (654)
148 KOG0344|consensus 99.0 5.8E-09 1.2E-13 126.9 14.8 76 1000-1101 409-484 (593)
149 PRK13767 ATP-dependent helicas 98.9 1.1E-08 2.3E-13 138.4 18.2 58 1025-1095 325-382 (876)
150 PRK11634 ATP-dependent RNA hel 98.9 1.3E-08 2.8E-13 132.4 18.0 65 1023-1102 278-342 (629)
151 KOG0342|consensus 98.9 5.6E-09 1.2E-13 124.2 13.1 275 755-1100 121-425 (543)
152 PRK01297 ATP-dependent RNA hel 98.9 1.2E-08 2.7E-13 129.9 17.3 63 1024-1101 369-431 (475)
153 KOG0338|consensus 98.9 1.9E-08 4.1E-13 119.4 17.3 67 1022-1103 458-524 (691)
154 KOG0343|consensus 98.9 1.2E-08 2.6E-13 122.0 14.8 278 750-1095 103-407 (758)
155 PRK04537 ATP-dependent RNA hel 98.9 1E-08 2.2E-13 132.5 15.7 62 1025-1101 292-353 (572)
156 PRK11776 ATP-dependent RNA hel 98.9 2.1E-08 4.5E-13 127.3 18.1 66 1022-1102 274-339 (460)
157 PRK11747 dinG ATP-dependent DN 98.9 3.7E-07 8.1E-12 120.6 30.2 72 472-554 17-96 (697)
158 PTZ00424 helicase 45; Provisio 98.9 3.2E-08 7E-13 123.4 18.4 61 1024-1100 301-362 (401)
159 TIGR00604 rad3 DNA repair heli 98.9 1.2E-07 2.6E-12 126.1 24.4 73 478-558 7-82 (705)
160 KOG0326|consensus 98.9 1E-08 2.2E-13 115.4 11.3 311 681-1104 60-421 (459)
161 COG0513 SrmB Superfamily II DN 98.9 6.3E-09 1.4E-13 132.8 10.9 63 1023-1100 306-368 (513)
162 PLN03137 ATP-dependent DNA hel 98.8 3.5E-08 7.5E-13 130.4 16.8 65 1023-1102 713-777 (1195)
163 PF04851 ResIII: Type III rest 98.8 4E-09 8.7E-14 116.0 6.9 62 481-556 3-70 (184)
164 PRK12903 secA preprotein trans 98.8 8E-07 1.7E-11 114.3 27.3 56 481-551 78-134 (925)
165 KOG0335|consensus 98.8 8E-08 1.7E-12 116.6 17.3 65 1028-1107 375-439 (482)
166 CHL00122 secA preprotein trans 98.8 7.2E-07 1.6E-11 115.5 26.8 61 478-554 74-135 (870)
167 TIGR00614 recQ_fam ATP-depende 98.8 1.5E-07 3.1E-12 119.8 19.7 64 1023-1101 259-322 (470)
168 TIGR02562 cas3_yersinia CRISPR 98.8 1.4E-06 2.9E-11 114.3 28.4 70 482-560 409-485 (1110)
169 KOG0350|consensus 98.8 1E-08 2.2E-13 121.7 6.9 60 1028-1102 471-530 (620)
170 KOG0333|consensus 98.7 1.1E-07 2.4E-12 113.6 15.0 79 1013-1106 531-618 (673)
171 PRK12902 secA preprotein trans 98.7 4.8E-06 1E-10 107.8 29.4 59 481-553 85-143 (939)
172 PRK11057 ATP-dependent DNA hel 98.7 1.8E-07 4E-12 122.2 16.3 62 1023-1100 269-331 (607)
173 smart00490 HELICc helicase sup 98.7 4.5E-08 9.7E-13 92.6 7.9 72 979-1095 11-82 (82)
174 KOG0341|consensus 98.7 3.2E-08 7E-13 113.6 7.1 65 1028-1107 459-523 (610)
175 KOG0340|consensus 98.7 1.8E-07 3.9E-12 107.4 12.9 275 759-1102 50-351 (442)
176 PRK09751 putative ATP-dependen 98.6 2.8E-07 6E-12 127.0 17.0 58 1024-1094 311-368 (1490)
177 KOG0332|consensus 98.6 3.7E-07 8E-12 105.4 13.9 78 1021-1107 361-438 (477)
178 TIGR01389 recQ ATP-dependent D 98.6 1.1E-06 2.3E-11 115.2 19.8 62 1024-1100 258-319 (591)
179 PRK01172 ski2-like helicase; P 98.6 4.8E-08 1E-12 129.7 6.1 94 1465-1561 561-667 (674)
180 KOG0328|consensus 98.5 6.6E-07 1.4E-11 99.7 13.1 71 1022-1107 298-368 (400)
181 KOG0334|consensus 98.5 9.5E-08 2.1E-12 123.4 7.7 66 1022-1102 645-710 (997)
182 KOG0345|consensus 98.5 1.2E-06 2.6E-11 104.1 16.1 279 755-1100 45-352 (567)
183 cd00046 DEXDc DEAD-like helica 98.5 3.4E-07 7.4E-12 95.1 10.4 50 498-556 1-50 (144)
184 COG1201 Lhr Lhr-like helicases 98.5 2.1E-06 4.5E-11 111.9 17.3 291 746-1095 30-346 (814)
185 KOG0347|consensus 98.4 2.5E-06 5.3E-11 102.8 12.8 65 1018-1095 485-555 (731)
186 KOG4434|consensus 98.3 2.3E-06 4.9E-11 97.7 11.2 102 1341-1442 130-244 (520)
187 KOG0336|consensus 98.3 7.7E-06 1.7E-10 95.2 14.2 285 742-1102 246-562 (629)
188 KOG1123|consensus 98.3 7.8E-06 1.7E-10 97.3 14.3 62 478-553 299-362 (776)
189 PRK10917 ATP-dependent DNA hel 98.3 1.6E-05 3.5E-10 105.4 18.5 57 1028-1100 519-577 (681)
190 PRK02362 ski2-like helicase; P 98.3 1E-06 2.3E-11 118.0 7.3 94 1466-1562 613-706 (737)
191 TIGR00643 recG ATP-dependent D 98.3 1.2E-05 2.6E-10 105.9 16.7 58 1028-1101 496-555 (630)
192 KOG4284|consensus 98.3 3E-06 6.4E-11 103.4 10.0 80 1013-1107 291-374 (980)
193 TIGR00580 mfd transcription-re 98.2 2.5E-05 5.4E-10 105.3 19.4 58 1028-1101 700-759 (926)
194 TIGR01587 cas3_core CRISPR-ass 98.2 3.2E-05 6.9E-10 95.2 18.7 46 756-810 2-47 (358)
195 PRK12901 secA preprotein trans 98.2 0.00027 5.9E-09 93.0 27.1 174 847-1109 565-741 (1112)
196 KOG0348|consensus 98.2 1E-05 2.3E-10 97.4 12.0 63 1022-1100 479-542 (708)
197 PRK00254 ski2-like helicase; P 98.2 2.3E-06 4.9E-11 114.5 7.2 95 1465-1562 603-701 (720)
198 COG1205 Distinct helicase fami 98.1 1.5E-05 3.3E-10 106.6 13.9 61 739-808 71-131 (851)
199 COG4889 Predicted helicase [Ge 98.1 2.4E-05 5.2E-10 98.2 14.2 65 478-555 158-225 (1518)
200 KOG0327|consensus 98.0 9.8E-06 2.1E-10 95.0 8.3 65 1023-1102 296-360 (397)
201 KOG0346|consensus 98.0 2.3E-05 5E-10 92.6 11.3 56 755-812 58-113 (569)
202 PRK10689 transcription-repair 98.0 8.2E-05 1.8E-09 102.6 18.4 60 1028-1102 849-909 (1147)
203 PRK09401 reverse gyrase; Revie 98.0 0.00011 2.3E-09 101.7 17.8 69 980-1092 356-429 (1176)
204 KOG0339|consensus 97.9 3.2E-05 6.9E-10 92.5 9.1 66 1022-1103 500-566 (731)
205 TIGR01970 DEAH_box_HrpB ATP-de 97.9 0.00012 2.7E-09 97.7 15.6 37 1028-1064 250-286 (819)
206 TIGR03117 cas_csf4 CRISPR-asso 97.9 1.8E-05 3.8E-10 102.0 7.2 56 493-557 12-67 (636)
207 smart00489 DEXDc3 DEAD-like he 97.8 3.3E-05 7.1E-10 91.9 7.6 75 478-558 6-83 (289)
208 smart00488 DEXDc2 DEAD-like he 97.8 3.3E-05 7.1E-10 91.9 7.6 75 478-558 6-83 (289)
209 PRK11664 ATP-dependent RNA hel 97.8 0.00014 3E-09 97.4 14.2 37 1028-1064 253-289 (812)
210 PRK14701 reverse gyrase; Provi 97.7 0.00033 7.2E-09 99.1 16.9 58 1028-1093 366-429 (1638)
211 COG0514 RecQ Superfamily II DN 97.7 0.00058 1.3E-08 86.7 16.8 269 754-1100 33-325 (590)
212 PF02399 Herpes_ori_bp: Origin 97.7 0.0018 3.9E-08 84.0 20.6 25 916-940 280-304 (824)
213 TIGR01054 rgy reverse gyrase. 97.6 0.001 2.2E-08 92.4 18.6 43 981-1027 355-402 (1171)
214 COG1111 MPH1 ERCC4-like helica 97.6 0.0025 5.5E-08 77.8 18.3 98 980-1093 341-465 (542)
215 COG1204 Superfamily II helicas 97.5 0.00013 2.9E-09 96.5 7.1 168 492-669 71-260 (766)
216 TIGR03158 cas3_cyano CRISPR-as 97.5 0.0047 1E-07 76.0 20.0 43 1037-1092 315-357 (357)
217 KOG0921|consensus 97.5 0.00059 1.3E-08 86.8 11.6 134 918-1111 643-776 (1282)
218 KOG1000|consensus 97.4 0.0052 1.1E-07 74.3 17.8 37 480-516 197-233 (689)
219 KOG0387|consensus 97.4 0.026 5.6E-07 72.2 24.1 112 986-1109 528-658 (923)
220 TIGR02621 cas3_GSU0051 CRISPR- 97.4 0.003 6.5E-08 83.6 16.8 56 1028-1101 308-379 (844)
221 COG4581 Superfamily II RNA hel 97.4 0.001 2.2E-08 88.8 12.4 137 481-636 119-307 (1041)
222 PF07652 Flavi_DEAD: Flaviviru 97.3 0.00075 1.6E-08 70.6 8.3 83 758-856 9-137 (148)
223 TIGR03714 secA2 accessory Sec 97.2 0.011 2.5E-07 77.5 19.4 66 1029-1102 461-527 (762)
224 PHA02653 RNA helicase NPH-II; 97.2 0.0063 1.4E-07 79.9 17.2 66 1029-1095 434-500 (675)
225 KOG0390|consensus 97.2 0.14 3E-06 67.3 28.7 97 975-1116 615-716 (776)
226 PRK13766 Hef nuclease; Provisi 97.2 0.0092 2E-07 81.2 19.4 55 1027-1095 410-465 (773)
227 PRK05580 primosome assembly pr 97.1 0.011 2.5E-07 78.4 19.2 64 1028-1095 468-534 (679)
228 KOG0352|consensus 97.1 0.023 5.1E-07 67.6 18.2 33 1027-1059 292-324 (641)
229 PF07652 Flavi_DEAD: Flaviviru 97.0 0.002 4.3E-08 67.5 8.0 53 496-558 3-55 (148)
230 TIGR00595 priA primosomal prot 97.0 0.013 2.7E-07 75.4 16.5 62 1030-1095 302-366 (505)
231 COG1202 Superfamily II helicas 96.9 0.0024 5.2E-08 78.2 8.9 102 558-669 344-447 (830)
232 KOG0947|consensus 96.9 0.00059 1.3E-08 87.6 3.9 138 480-636 296-481 (1248)
233 COG1200 RecG RecG-like helicas 96.8 0.04 8.7E-07 70.4 18.5 65 995-1059 464-552 (677)
234 PHA02558 uvsW UvsW helicase; P 96.8 0.013 2.8E-07 75.6 14.7 55 1028-1095 382-437 (501)
235 KOG0385|consensus 96.8 0.14 3.1E-06 65.5 22.7 64 480-551 166-232 (971)
236 PF06862 DUF1253: Protein of u 96.8 0.14 3E-06 63.8 22.5 144 845-1027 215-374 (442)
237 KOG0389|consensus 96.7 0.14 3E-06 65.8 22.0 118 1002-1130 775-910 (941)
238 PRK15483 type III restriction- 96.6 0.032 7E-07 74.8 16.4 49 498-555 60-108 (986)
239 KOG0948|consensus 96.6 0.00075 1.6E-08 84.6 0.9 137 480-635 128-312 (1041)
240 KOG0337|consensus 96.5 0.023 5.1E-07 67.8 12.8 46 760-812 65-110 (529)
241 PF00176 SNF2_N: SNF2 family N 96.4 0.027 5.8E-07 67.2 12.8 54 496-556 24-77 (299)
242 PF13245 AAA_19: Part of AAA d 96.3 0.0088 1.9E-07 56.5 6.3 60 489-556 2-62 (76)
243 TIGR00603 rad25 DNA repair hel 96.3 0.067 1.4E-06 70.5 16.3 54 1028-1095 529-585 (732)
244 KOG0950|consensus 96.2 0.0061 1.3E-07 79.3 6.4 152 467-637 206-419 (1008)
245 PF02562 PhoH: PhoH-like prote 96.2 0.037 7.9E-07 62.3 11.7 150 480-669 3-153 (205)
246 KOG2340|consensus 96.1 0.1 2.2E-06 64.2 15.4 74 480-556 215-313 (698)
247 COG0610 Type I site-specific r 96.1 0.59 1.3E-05 64.6 24.9 53 497-558 273-325 (962)
248 PF13307 Helicase_C_2: Helicas 96.0 0.0026 5.6E-08 69.6 1.4 144 918-1119 9-161 (167)
249 cd00268 DEADc DEAD-box helicas 95.7 0.011 2.3E-07 66.7 4.8 60 743-808 26-85 (203)
250 PF13604 AAA_30: AAA domain; P 95.7 0.048 1E-06 61.3 10.0 64 481-555 1-65 (196)
251 PRK09694 helicase Cas3; Provis 95.7 0.32 7E-06 66.0 19.0 54 1030-1096 607-664 (878)
252 PF00270 DEAD: DEAD/DEAH box h 95.6 0.011 2.4E-07 64.1 4.4 49 752-809 13-61 (169)
253 PF13086 AAA_11: AAA domain; P 95.4 0.028 6E-07 64.2 7.0 74 481-558 1-75 (236)
254 KOG0351|consensus 95.4 0.27 5.8E-06 66.7 16.7 64 1022-1100 517-580 (941)
255 PF00580 UvrD-helicase: UvrD/R 95.3 0.023 5E-07 68.2 5.8 67 482-558 1-67 (315)
256 PF00271 Helicase_C: Helicase 94.9 0.015 3.2E-07 54.8 2.3 59 1023-1095 16-75 (78)
257 TIGR00376 DNA helicase, putati 94.6 0.066 1.4E-06 70.7 7.7 68 480-558 156-223 (637)
258 PRK10536 hypothetical protein; 94.6 0.55 1.2E-05 54.6 14.1 138 478-648 56-194 (262)
259 COG5407 SEC63 Preprotein trans 94.0 0.054 1.2E-06 64.9 4.5 167 1228-1421 227-397 (610)
260 COG4962 CpaF Flp pilus assembl 93.9 0.1 2.2E-06 62.2 6.5 64 478-553 154-217 (355)
261 PRK13894 conjugal transfer ATP 93.7 0.13 2.8E-06 62.2 7.2 61 480-549 131-191 (319)
262 TIGR03117 cas_csf4 CRISPR-asso 93.5 0.096 2.1E-06 68.3 6.0 48 754-810 17-64 (636)
263 TIGR00963 secA preprotein tran 93.4 0.067 1.4E-06 70.2 4.4 31 1028-1058 441-471 (745)
264 PRK13104 secA preprotein trans 93.4 0.063 1.4E-06 71.5 4.1 70 1028-1110 482-588 (896)
265 COG1203 CRISPR-associated heli 93.4 0.36 7.9E-06 65.1 11.3 50 755-811 216-265 (733)
266 KOG1803|consensus 93.1 0.16 3.6E-06 63.8 6.7 67 480-557 184-250 (649)
267 PRK13833 conjugal transfer pro 93.0 0.22 4.7E-06 60.2 7.6 61 480-549 127-187 (323)
268 PRK09200 preprotein translocas 92.4 0.13 2.8E-06 68.6 5.0 45 1324-1368 706-750 (790)
269 KOG0329|consensus 92.3 0.21 4.6E-06 56.1 5.6 122 536-669 161-290 (387)
270 TIGR02782 TrbB_P P-type conjug 92.2 0.35 7.5E-06 58.1 7.9 61 481-550 116-176 (299)
271 smart00492 HELICc3 helicase su 92.2 0.61 1.3E-05 49.6 8.8 102 983-1105 25-135 (141)
272 KOG0354|consensus 91.9 0.13 2.8E-06 66.9 3.8 100 753-866 76-233 (746)
273 KOG1802|consensus 91.6 0.33 7.2E-06 61.3 6.7 70 478-558 407-476 (935)
274 PRK12899 secA preprotein trans 91.5 0.2 4.4E-06 66.9 5.1 43 755-808 109-151 (970)
275 PF02399 Herpes_ori_bp: Origin 91.2 0.58 1.3E-05 61.6 8.7 95 499-603 51-194 (824)
276 COG1197 Mfd Transcription-repa 91.2 1.1 2.5E-05 61.0 11.5 79 916-1027 641-720 (1139)
277 KOG0392|consensus 91.1 0.79 1.7E-05 61.7 9.7 114 917-1109 1339-1454(1549)
278 TIGR01407 dinG_rel DnaQ family 91.0 0.25 5.4E-06 67.9 5.5 46 753-809 264-309 (850)
279 smart00489 DEXDc3 DEAD-like he 90.9 0.14 3.1E-06 61.2 2.8 53 751-808 25-77 (289)
280 smart00488 DEXDc2 DEAD-like he 90.9 0.14 3.1E-06 61.2 2.8 53 751-808 25-77 (289)
281 COG0630 VirB11 Type IV secreto 90.8 0.65 1.4E-05 56.1 8.2 61 478-550 124-184 (312)
282 PRK07246 bifunctional ATP-depe 90.8 0.29 6.3E-06 66.6 5.7 45 753-809 264-308 (820)
283 KOG0384|consensus 90.7 0.87 1.9E-05 61.5 9.6 111 917-1110 698-812 (1373)
284 PRK05298 excinuclease ABC subu 90.6 0.43 9.3E-06 63.5 7.1 63 1024-1094 480-542 (652)
285 PRK10919 ATP-dependent DNA hel 90.3 0.38 8.2E-06 64.3 6.2 68 481-558 2-69 (672)
286 PRK13851 type IV secretion sys 90.3 0.35 7.7E-06 59.0 5.4 53 486-550 151-203 (344)
287 COG0653 SecA Preprotein transl 90.1 0.38 8.2E-06 63.6 5.6 41 1328-1368 715-755 (822)
288 PF04851 ResIII: Type III rest 89.9 0.47 1E-05 51.9 5.5 43 753-809 25-67 (184)
289 COG1875 NYN ribonuclease and A 89.7 3.8 8.3E-05 49.4 12.8 158 478-669 225-384 (436)
290 KOG0353|consensus 88.8 14 0.0003 44.1 16.2 102 989-1111 325-469 (695)
291 PRK13900 type IV secretion sys 88.7 0.66 1.4E-05 56.6 6.0 52 487-550 150-201 (332)
292 PRK12898 secA preprotein trans 88.6 0.48 1E-05 62.0 5.0 41 757-808 120-160 (656)
293 PRK11054 helD DNA helicase IV; 88.5 0.84 1.8E-05 60.9 7.3 69 480-558 195-263 (684)
294 KOG0923|consensus 88.3 8 0.00017 49.6 14.8 135 487-638 271-453 (902)
295 TIGR01075 uvrD DNA helicase II 88.0 0.65 1.4E-05 62.8 6.0 69 480-558 3-71 (715)
296 PRK11773 uvrD DNA-dependent he 88.0 0.69 1.5E-05 62.6 6.2 69 480-558 8-76 (721)
297 KOG0922|consensus 87.3 5.5 0.00012 51.4 12.9 127 493-636 62-236 (674)
298 cd00046 DEXDc DEAD-like helica 87.2 0.92 2E-05 46.5 5.3 44 756-808 3-46 (144)
299 cd00079 HELICc Helicase superf 87.1 0.49 1.1E-05 48.6 3.2 60 1027-1101 65-124 (131)
300 TIGR02785 addA_Gpos recombinat 86.7 0.92 2E-05 64.8 6.5 68 481-559 1-68 (1232)
301 TIGR00596 rad1 DNA repair prot 86.2 4 8.7E-05 55.3 11.6 52 1364-1415 759-810 (814)
302 TIGR02768 TraA_Ti Ti-type conj 86.0 3.5 7.6E-05 55.8 11.1 64 480-554 351-414 (744)
303 TIGR01074 rep ATP-dependent DN 86.0 1.2 2.5E-05 59.9 6.6 68 481-558 1-68 (664)
304 PF01695 IstB_IS21: IstB-like 85.9 1.2 2.6E-05 49.3 5.7 49 494-554 44-92 (178)
305 cd01130 VirB11-like_ATPase Typ 85.9 0.95 2.1E-05 50.5 4.8 36 479-514 7-42 (186)
306 COG4098 comFA Superfamily II D 85.7 12 0.00026 44.7 13.5 74 986-1059 287-374 (441)
307 PRK08074 bifunctional ATP-depe 85.7 0.95 2.1E-05 62.8 5.7 46 754-809 277-322 (928)
308 COG1061 SSL2 DNA or RNA helica 85.2 0.7 1.5E-05 58.7 3.7 55 1028-1095 320-374 (442)
309 KOG4439|consensus 85.0 6.1 0.00013 51.0 11.4 76 481-558 325-404 (901)
310 PRK10875 recD exonuclease V su 84.4 2.8 6.1E-05 55.2 8.8 80 467-556 138-219 (615)
311 PRK11747 dinG ATP-dependent DN 84.1 1.3 2.9E-05 59.5 5.7 45 755-809 51-95 (697)
312 PRK12377 putative replication 84.0 1.9 4.2E-05 50.3 6.4 47 497-555 101-147 (248)
313 KOG0385|consensus 84.0 62 0.0013 42.8 19.6 101 1001-1111 483-601 (971)
314 PRK13107 preprotein translocas 83.7 0.96 2.1E-05 60.6 4.1 70 1028-1110 487-592 (908)
315 PRK08181 transposase; Validate 83.3 2.5 5.5E-05 50.0 7.0 48 494-553 103-150 (269)
316 smart00491 HELICc2 helicase su 83.3 0.62 1.3E-05 49.6 1.8 91 992-1105 31-136 (142)
317 TIGR00631 uvrb excinuclease AB 83.2 0.78 1.7E-05 60.9 3.0 63 1024-1094 476-538 (655)
318 PRK13889 conjugal transfer rel 83.2 4.3 9.3E-05 56.1 10.0 63 480-553 345-407 (988)
319 TIGR01073 pcrA ATP-dependent D 82.5 1.8 3.9E-05 58.8 6.1 68 480-557 3-70 (726)
320 PF12340 DUF3638: Protein of u 82.4 9.7 0.00021 43.7 10.9 81 467-558 9-91 (229)
321 PRK12723 flagellar biosynthesi 81.9 8.8 0.00019 47.8 11.3 102 497-603 174-301 (388)
322 KOG0388|consensus 81.6 6 0.00013 50.8 9.4 64 482-553 568-637 (1185)
323 TIGR03819 heli_sec_ATPase heli 81.5 2.2 4.8E-05 52.2 5.9 57 481-549 162-218 (340)
324 PRK12904 preprotein translocas 81.2 1.2 2.6E-05 59.6 3.7 73 1027-1110 465-574 (830)
325 PF00437 T2SE: Type II/IV secr 81.0 1.9 4.1E-05 51.1 4.9 54 486-550 116-169 (270)
326 KOG0953|consensus 80.8 1.8 3.9E-05 54.2 4.6 47 497-558 191-237 (700)
327 PRK06835 DNA replication prote 80.7 4.2 9.2E-05 49.5 7.8 45 496-552 182-226 (329)
328 smart00487 DEXDc DEAD-like hel 80.6 2.3 4.9E-05 46.5 5.1 48 754-810 25-72 (201)
329 COG1219 ClpX ATP-dependent pro 80.6 0.97 2.1E-05 53.1 2.1 20 496-515 96-115 (408)
330 KOG0989|consensus 80.4 6 0.00013 46.8 8.4 94 497-596 57-166 (346)
331 PF14520 HHH_5: Helix-hairpin- 79.2 2.7 5.7E-05 37.8 4.1 54 1507-1560 6-59 (60)
332 TIGR02788 VirB11 P-type DNA tr 79.1 2.4 5.2E-05 51.3 5.0 27 488-514 135-161 (308)
333 PF12846 AAA_10: AAA-like doma 78.8 2.6 5.7E-05 50.1 5.3 43 497-550 1-43 (304)
334 PRK06526 transposase; Provisio 78.6 3.4 7.3E-05 48.6 5.9 36 734-771 81-116 (254)
335 PRK05707 DNA polymerase III su 78.3 6.9 0.00015 47.8 8.6 115 482-596 4-143 (328)
336 COG1199 DinG Rad3-related DNA 78.0 2.7 6E-05 56.3 5.6 45 754-808 35-79 (654)
337 COG1484 DnaC DNA replication p 77.5 5.1 0.00011 47.1 6.9 52 494-557 102-153 (254)
338 TIGR01447 recD exodeoxyribonuc 77.5 6.8 0.00015 51.5 8.7 76 471-556 136-213 (586)
339 PF04408 HA2: Helicase associa 77.2 2 4.4E-05 42.9 3.1 66 1194-1266 1-66 (102)
340 KOG0391|consensus 77.1 9.8 0.00021 51.5 9.7 41 482-523 616-659 (1958)
341 PF13872 AAA_34: P-loop contai 76.7 42 0.0009 40.2 14.0 74 467-554 27-109 (303)
342 TIGR01448 recD_rel helicase, p 76.2 6.4 0.00014 53.2 8.2 65 480-554 322-386 (720)
343 PF12775 AAA_7: P-loop contain 76.0 2.2 4.7E-05 50.7 3.4 29 488-516 24-52 (272)
344 cd01129 PulE-GspE PulE/GspE Th 75.9 5.4 0.00012 47.2 6.6 39 483-522 65-104 (264)
345 PRK14722 flhF flagellar biosyn 75.3 7 0.00015 48.3 7.5 29 494-522 134-162 (374)
346 PRK08769 DNA polymerase III su 75.2 14 0.0003 44.9 10.0 42 479-520 2-49 (319)
347 PRK07952 DNA replication prote 75.1 7.8 0.00017 45.2 7.5 46 498-555 100-145 (244)
348 PRK14974 cell division protein 74.9 16 0.00035 44.6 10.5 57 563-619 226-286 (336)
349 PF13604 AAA_30: AAA domain; P 74.7 12 0.00025 42.2 8.7 41 756-807 21-61 (196)
350 KOG0991|consensus 74.1 3 6.6E-05 47.0 3.6 96 498-593 49-147 (333)
351 smart00382 AAA ATPases associa 74.0 2.6 5.7E-05 43.0 3.0 22 497-518 2-23 (148)
352 COG2804 PulE Type II secretory 74.0 3.1 6.6E-05 52.5 4.0 40 483-523 243-283 (500)
353 PRK06526 transposase; Provisio 73.2 3.1 6.8E-05 48.8 3.7 47 495-553 96-142 (254)
354 PRK13103 secA preprotein trans 72.7 3.4 7.4E-05 55.6 4.2 42 1327-1368 763-804 (913)
355 PRK11889 flhF flagellar biosyn 72.7 22 0.00047 44.3 10.6 24 497-520 241-264 (436)
356 COG3587 Restriction endonuclea 71.9 3.5 7.5E-05 54.3 3.9 46 497-551 74-119 (985)
357 PF00448 SRP54: SRP54-type pro 71.6 34 0.00073 38.6 11.4 54 563-616 87-144 (196)
358 PF05621 TniB: Bacterial TniB 71.6 13 0.00027 44.5 8.1 104 742-851 31-186 (302)
359 PRK12727 flagellar biosynthesi 71.5 24 0.00053 45.4 11.1 24 495-518 348-371 (559)
360 KOG1131|consensus 71.3 11 0.00024 47.1 7.6 72 478-556 13-87 (755)
361 PRK10436 hypothetical protein; 71.3 5.5 0.00012 50.8 5.5 40 483-523 203-243 (462)
362 TIGR02538 type_IV_pilB type IV 71.2 5.3 0.00011 52.5 5.5 39 483-522 301-340 (564)
363 PF02534 T4SS-DNA_transf: Type 71.1 2.3 4.9E-05 54.6 2.1 43 498-553 45-87 (469)
364 PRK14873 primosome assembly pr 70.9 14 0.00031 49.2 9.4 63 917-1014 187-249 (665)
365 PRK08116 hypothetical protein; 70.9 10 0.00022 44.9 7.4 46 499-556 116-161 (268)
366 PRK04914 ATP-dependent helicas 70.6 3.2 7E-05 57.1 3.4 65 1023-1102 527-593 (956)
367 COG3973 Superfamily I DNA and 70.3 8.9 0.00019 49.0 6.7 81 469-556 191-280 (747)
368 TIGR01420 pilT_fam pilus retra 70.1 7.5 0.00016 47.8 6.2 45 495-549 120-164 (343)
369 cd01126 TraG_VirD4 The TraG/Tr 69.6 1.6 3.4E-05 54.6 0.2 42 499-553 1-42 (384)
370 KOG1132|consensus 69.3 7.3 0.00016 51.7 5.9 78 481-558 21-132 (945)
371 COG2805 PilT Tfp pilus assembl 69.1 3.7 7.9E-05 48.4 3.0 28 497-525 125-152 (353)
372 COG1198 PriA Primosomal protei 69.1 12 0.00025 50.1 7.9 62 917-1014 244-305 (730)
373 COG1222 RPT1 ATP-dependent 26S 68.6 17 0.00036 44.1 8.2 54 461-518 149-206 (406)
374 PRK12724 flagellar biosynthesi 68.1 31 0.00067 43.3 10.8 23 498-520 224-246 (432)
375 PRK09183 transposase/IS protei 68.1 7 0.00015 46.1 5.2 47 494-552 99-145 (259)
376 PRK13897 type IV secretion sys 67.7 2.6 5.7E-05 55.3 1.6 44 497-553 158-201 (606)
377 COG1110 Reverse gyrase [DNA re 67.6 19 0.00042 48.7 9.3 68 917-1015 124-191 (1187)
378 TIGR02525 plasmid_TraJ plasmid 67.6 4 8.6E-05 50.5 3.1 28 495-523 147-174 (372)
379 COG1074 RecB ATP-dependent exo 67.5 4.9 0.00011 57.1 4.3 62 493-560 12-73 (1139)
380 COG1419 FlhF Flagellar GTP-bin 67.5 44 0.00095 41.6 11.7 109 496-609 202-332 (407)
381 PF00308 Bac_DnaA: Bacterial d 67.4 15 0.00033 42.1 7.6 90 754-856 35-141 (219)
382 smart00847 HA2 Helicase associ 67.3 11 0.00024 36.6 5.6 58 1195-1257 2-59 (92)
383 PF13245 AAA_19: Part of AAA d 67.2 12 0.00025 35.5 5.4 50 756-812 13-62 (76)
384 PRK11448 hsdR type I restricti 67.2 6.9 0.00015 55.2 5.6 114 918-1106 698-813 (1123)
385 TIGR02640 gas_vesic_GvpN gas v 66.9 6.4 0.00014 46.5 4.5 24 494-517 18-41 (262)
386 KOG1133|consensus 66.8 9 0.00019 49.6 5.9 46 480-525 14-62 (821)
387 PF02562 PhoH: PhoH-like prote 66.7 7.5 0.00016 44.1 4.8 25 756-780 22-46 (205)
388 PF04665 Pox_A32: Poxvirus A32 66.6 11 0.00023 43.9 6.0 30 493-523 9-38 (241)
389 cd01124 KaiC KaiC is a circadi 66.4 7.4 0.00016 42.9 4.7 42 500-553 2-43 (187)
390 PRK08727 hypothetical protein; 66.2 19 0.00041 41.7 8.2 58 755-824 43-109 (233)
391 PF01580 FtsK_SpoIIIE: FtsK/Sp 65.9 9.9 0.00021 42.9 5.7 43 496-545 37-79 (205)
392 PRK13764 ATPase; Provisional 65.8 10 0.00022 49.7 6.3 30 493-523 253-282 (602)
393 PRK13850 type IV secretion sys 65.6 3.3 7.2E-05 55.0 2.0 42 497-551 139-180 (670)
394 cd01131 PilT Pilus retraction 65.6 7.7 0.00017 43.7 4.7 24 499-523 3-26 (198)
395 PRK06893 DNA replication initi 65.5 27 0.00059 40.3 9.2 21 498-518 40-60 (229)
396 PRK12726 flagellar biosynthesi 65.4 22 0.00048 44.0 8.7 25 496-520 205-229 (407)
397 PRK11131 ATP-dependent RNA hel 65.2 24 0.00051 50.1 10.0 140 489-636 81-259 (1294)
398 TIGR00064 ftsY signal recognit 65.1 46 0.001 39.6 11.2 23 497-519 72-94 (272)
399 COG0553 HepA Superfamily II DN 64.6 23 0.0005 49.0 10.1 110 920-1110 713-823 (866)
400 TIGR02524 dot_icm_DotB Dot/Icm 64.5 7.8 0.00017 47.9 4.8 28 495-523 132-159 (358)
401 COG3421 Uncharacterized protei 64.3 57 0.0012 42.0 11.8 251 757-1021 1-346 (812)
402 PRK13826 Dtr system oriT relax 64.2 30 0.00066 48.5 10.7 69 474-553 374-442 (1102)
403 TIGR03877 thermo_KaiC_1 KaiC d 64.2 8.5 0.00018 44.7 4.8 46 496-553 20-65 (237)
404 TIGR02880 cbbX_cfxQ probable R 64.2 26 0.00057 41.9 9.0 20 497-516 58-77 (284)
405 PRK05973 replicative DNA helic 63.9 8.8 0.00019 44.5 4.8 40 494-544 61-100 (237)
406 TIGR00604 rad3 DNA repair heli 63.8 6.3 0.00014 53.3 4.2 57 743-807 19-75 (705)
407 PRK08903 DnaA regulatory inact 63.6 17 0.00038 41.6 7.2 60 752-822 41-104 (227)
408 TIGR00348 hsdR type I site-spe 63.5 8.5 0.00018 51.7 5.2 97 918-1027 514-613 (667)
409 PRK05642 DNA replication initi 63.4 19 0.00041 41.8 7.4 58 754-823 46-112 (234)
410 KOG0924|consensus 63.3 41 0.00089 43.7 10.5 45 586-636 497-541 (1042)
411 PRK05642 DNA replication initi 63.3 19 0.00041 41.7 7.5 41 498-550 46-86 (234)
412 TIGR02533 type_II_gspE general 63.2 6.9 0.00015 50.3 4.1 39 483-522 227-266 (486)
413 cd00009 AAA The AAA+ (ATPases 63.2 11 0.00023 38.9 4.9 21 497-517 19-39 (151)
414 PF14520 HHH_5: Helix-hairpin- 63.0 7 0.00015 35.1 3.0 42 1364-1408 7-49 (60)
415 PRK08084 DNA replication initi 63.0 18 0.0004 41.9 7.3 61 752-823 44-112 (235)
416 PF06745 KaiC: KaiC; InterPro 62.9 8.1 0.00018 44.3 4.3 39 496-544 18-56 (226)
417 cd01127 TrwB Bacterial conjuga 62.5 9.1 0.0002 48.3 5.0 46 497-553 42-87 (410)
418 PRK13880 conjugal transfer cou 61.9 3.2 6.9E-05 55.1 0.8 42 497-551 175-216 (636)
419 PF05970 PIF1: PIF1-like helic 61.8 16 0.00034 45.4 6.8 61 481-552 1-66 (364)
420 PRK15483 type III restriction- 61.7 15 0.00032 50.5 6.8 47 752-807 58-104 (986)
421 PRK04296 thymidine kinase; Pro 61.0 9.2 0.0002 42.8 4.2 36 498-544 3-38 (190)
422 PF07517 SecA_DEAD: SecA DEAD- 61.0 19 0.00041 42.6 6.8 63 480-556 76-138 (266)
423 PF01078 Mg_chelatase: Magnesi 61.0 8.5 0.00018 43.5 3.8 29 487-515 12-40 (206)
424 COG0606 Predicted ATPase with 60.9 7.4 0.00016 48.8 3.6 28 487-514 188-215 (490)
425 KOG0745|consensus 60.5 5.1 0.00011 49.1 2.1 20 496-515 225-244 (564)
426 PRK13876 conjugal transfer cou 60.5 4.9 0.00011 53.4 2.1 43 496-551 143-185 (663)
427 PRK06871 DNA polymerase III su 59.7 31 0.00067 42.1 8.6 114 483-596 4-144 (325)
428 cd00984 DnaB_C DnaB helicase C 59.7 9.7 0.00021 44.1 4.2 48 495-552 11-61 (242)
429 PRK08699 DNA polymerase III su 59.6 30 0.00065 42.3 8.5 38 483-520 3-44 (325)
430 PF02456 Adeno_IVa2: Adenoviru 59.5 9.5 0.00021 45.1 3.9 41 500-549 90-130 (369)
431 PRK14729 miaA tRNA delta(2)-is 59.3 5.7 0.00012 47.6 2.3 21 497-517 4-24 (300)
432 PF13401 AAA_22: AAA domain; P 59.3 5.8 0.00013 40.9 2.1 23 496-518 3-25 (131)
433 KOG0349|consensus 58.9 6.1 0.00013 47.9 2.4 59 466-525 8-67 (725)
434 PRK08181 transposase; Validate 58.8 24 0.00053 41.8 7.4 63 746-822 101-181 (269)
435 PF10412 TrwB_AAD_bind: Type I 58.8 13 0.00029 46.5 5.4 47 496-553 14-60 (386)
436 TIGR03881 KaiC_arch_4 KaiC dom 58.4 12 0.00027 42.9 4.8 39 495-544 18-56 (229)
437 TIGR02759 TraD_Ftype type IV c 58.0 12 0.00027 49.0 5.2 42 497-549 176-217 (566)
438 cd01120 RecA-like_NTPases RecA 57.8 17 0.00036 38.5 5.4 40 500-550 2-41 (165)
439 TIGR03420 DnaA_homol_Hda DnaA 57.3 21 0.00046 40.7 6.4 66 746-823 31-105 (226)
440 TIGR02767 TraG-Ti Ti-type conj 56.9 5.8 0.00013 52.3 1.9 43 497-552 211-253 (623)
441 TIGR03743 SXT_TraD conjugative 56.8 14 0.0003 49.1 5.4 47 496-553 175-223 (634)
442 PRK06964 DNA polymerase III su 56.7 33 0.00072 42.1 8.2 36 483-518 3-42 (342)
443 TIGR02237 recomb_radB DNA repa 56.5 15 0.00032 41.6 4.9 39 496-545 11-49 (209)
444 PF07724 AAA_2: AAA domain (Cd 56.2 7 0.00015 43.1 2.1 19 498-516 4-22 (171)
445 PRK00149 dnaA chromosomal repl 56.2 29 0.00063 44.4 8.0 44 498-551 149-192 (450)
446 PRK06921 hypothetical protein; 56.1 15 0.00033 43.5 5.0 46 496-552 116-161 (266)
447 PHA02244 ATPase-like protein 56.0 12 0.00026 46.0 4.2 24 492-515 114-137 (383)
448 PRK12326 preprotein translocas 56.0 12 0.00026 49.6 4.4 123 915-1110 424-548 (764)
449 PF13481 AAA_25: AAA domain; P 56.0 15 0.00032 40.8 4.8 51 496-547 31-81 (193)
450 PF13555 AAA_29: P-loop contai 55.9 8.9 0.00019 34.9 2.3 18 497-514 23-40 (62)
451 PF09848 DUF2075: Uncharacteri 55.8 14 0.00029 45.7 4.8 51 499-558 3-53 (352)
452 TIGR00390 hslU ATP-dependent p 55.7 13 0.00028 46.4 4.5 19 498-516 48-66 (441)
453 PRK07993 DNA polymerase III su 55.6 30 0.00065 42.4 7.6 115 482-596 3-145 (334)
454 PRK14721 flhF flagellar biosyn 55.6 63 0.0014 40.8 10.5 23 495-517 189-211 (420)
455 cd01122 GP4d_helicase GP4d_hel 55.6 13 0.00029 43.8 4.5 40 495-544 28-67 (271)
456 TIGR01967 DEAH_box_HrpA ATP-de 55.5 50 0.0011 47.2 10.5 140 489-636 74-252 (1283)
457 PF07705 CARDB: CARDB; InterP 55.5 49 0.0011 32.2 7.9 83 1563-1660 2-87 (101)
458 TIGR02881 spore_V_K stage V sp 55.4 27 0.00059 41.1 7.1 100 755-854 44-152 (261)
459 PRK12906 secA preprotein trans 54.9 11 0.00024 50.6 4.0 44 1325-1368 722-765 (796)
460 TIGR03744 traC_PFL_4706 conjug 54.9 15 0.00032 51.1 5.4 42 496-547 474-515 (893)
461 PF01695 IstB_IS21: IstB-like 54.7 11 0.00023 41.9 3.3 74 733-820 29-120 (178)
462 TIGR03499 FlhF flagellar biosy 54.7 16 0.00036 43.6 5.1 23 496-518 193-215 (282)
463 PF13871 Helicase_C_4: Helicas 54.7 24 0.00052 41.9 6.3 19 1078-1096 97-115 (278)
464 CHL00181 cbbX CbbX; Provisiona 54.5 63 0.0014 38.8 10.0 105 753-869 59-181 (287)
465 TIGR03420 DnaA_homol_Hda DnaA 54.5 16 0.00036 41.6 5.0 23 496-518 37-59 (226)
466 KOG0060|consensus 54.2 7 0.00015 49.8 1.9 18 496-513 460-477 (659)
467 PF09848 DUF2075: Uncharacteri 54.0 18 0.0004 44.6 5.6 14 809-822 84-97 (352)
468 TIGR02784 addA_alphas double-s 53.6 18 0.00039 51.9 6.0 59 494-560 7-65 (1141)
469 PRK06731 flhF flagellar biosyn 53.6 96 0.0021 36.9 11.1 25 496-520 74-98 (270)
470 TIGR03880 KaiC_arch_3 KaiC dom 53.5 18 0.00038 41.5 5.0 40 496-546 15-54 (224)
471 PRK10416 signal recognition pa 53.5 94 0.002 37.9 11.3 22 496-517 113-134 (318)
472 KOG0949|consensus 53.3 13 0.00027 50.0 3.9 94 755-866 528-682 (1330)
473 PF13177 DNA_pol3_delta2: DNA 53.0 32 0.00069 37.5 6.6 102 498-599 20-142 (162)
474 PF04931 DNA_pol_phi: DNA poly 52.7 50 0.0011 45.4 9.8 76 98-176 541-632 (784)
475 PLN03025 replication factor C 52.5 49 0.0011 40.3 8.8 21 498-518 35-55 (319)
476 PRK06893 DNA replication initi 52.2 31 0.00068 39.8 6.8 86 756-856 42-135 (229)
477 COG3598 RepA RecA-family ATPas 52.1 22 0.00047 42.5 5.2 60 483-543 75-134 (402)
478 TIGR03878 thermo_KaiC_2 KaiC d 52.0 18 0.00038 42.7 4.8 38 496-544 35-72 (259)
479 COG1220 HslU ATP-dependent pro 51.7 11 0.00025 44.9 3.0 18 497-514 50-67 (444)
480 PRK00091 miaA tRNA delta(2)-is 51.4 9.3 0.0002 46.1 2.3 20 498-517 5-24 (307)
481 TIGR03754 conj_TOL_TraD conjug 51.3 19 0.0004 47.6 5.1 39 497-546 180-218 (643)
482 COG0470 HolB ATPase involved i 51.3 77 0.0017 38.1 10.4 26 497-523 23-49 (325)
483 PF13238 AAA_18: AAA domain; P 51.3 9.7 0.00021 38.9 2.2 18 500-517 1-18 (129)
484 PF09439 SRPRB: Signal recogni 51.0 12 0.00025 41.7 2.8 23 497-519 3-25 (181)
485 COG0324 MiaA tRNA delta(2)-iso 50.9 9.7 0.00021 45.7 2.3 18 499-516 5-22 (308)
486 PRK09354 recA recombinase A; P 50.8 51 0.0011 40.5 8.4 53 496-559 59-111 (349)
487 PF13207 AAA_17: AAA domain; P 50.5 10 0.00022 38.6 2.2 18 500-517 2-19 (121)
488 PRK04328 hypothetical protein; 50.3 20 0.00044 42.0 4.8 37 496-543 22-58 (249)
489 PLN02165 adenylate isopentenyl 50.3 11 0.00023 45.9 2.6 21 496-516 42-62 (334)
490 PRK08084 DNA replication initi 50.0 22 0.00049 41.2 5.1 21 496-516 44-64 (235)
491 TIGR02746 TraC-F-type type-IV 49.9 19 0.00042 49.5 5.3 42 496-548 429-470 (797)
492 PF07728 AAA_5: AAA domain (dy 49.8 10 0.00022 39.8 2.0 20 499-518 1-20 (139)
493 PRK13709 conjugal transfer nic 49.7 37 0.00081 49.9 8.1 67 480-553 966-1033(1747)
494 TIGR01425 SRP54_euk signal rec 49.6 98 0.0021 39.2 10.8 57 563-619 186-246 (429)
495 PRK08903 DnaA regulatory inact 49.5 22 0.00047 40.8 4.9 23 496-518 41-63 (227)
496 cd01394 radB RadB. The archaea 49.5 21 0.00045 40.7 4.7 37 496-543 18-54 (218)
497 PRK08727 hypothetical protein; 49.2 22 0.00047 41.2 4.9 19 498-516 42-60 (233)
498 TIGR02880 cbbX_cfxQ probable R 49.2 59 0.0013 38.9 8.6 19 753-771 58-76 (284)
499 COG2854 Ttg2D ABC-type transpo 49.2 40 0.00086 37.9 6.5 61 121-181 22-86 (202)
500 PRK00771 signal recognition pa 49.2 82 0.0018 40.1 10.2 22 497-518 95-116 (437)
No 1
>KOG0951|consensus
Probab=100.00 E-value=3.7e-198 Score=1811.49 Aligned_cols=1048 Identities=58% Similarity=0.937 Sum_probs=951.9
Q ss_pred HHHHHhhhcccCcccccc-ccccccCcccCcceeecCCCCCCCcccccccccccccccc---hhhhhchhhhhhccccCC
Q psy14582 172 LVNLGKKITDFGAEQKST-TAEENIDDTYGINVQFEESEDEDDEDTFGEVREAEELDDE---GEEARVNTAIHAENLAGG 247 (1689)
Q Consensus 172 L~~L~k~ItDy~~~~~~~-~~~~~~d~~~Gv~v~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 247 (1689)
+|+|+|+||||....+++ ..+..+++..||++.|++.+++++.+.++.++++.++|++ ++...+ ..+.......
T Consensus 1 lV~l~k~itdy~~~~~sk~~~d~~~~~~e~v~v~~~e~dde~~~~l~~~vkse~~ed~~~~~ee~~k~--~kq~~~~~k~ 78 (1674)
T KOG0951|consen 1 LVKLGKLITDYELEQDSKKVMDIGIDAAEGVEVEVEEIDDESLQDLFDMVKSELDEDDKNVKEEVAKF--VKQVPAIIKT 78 (1674)
T ss_pred CccccccceeeeecCCchhhhhccccccccCccccccCcchhhhHHHHHhhhhhccchhhhhhhhhhh--heeccccccc
Confidence 589999999996654432 2344567778999999997776654555555554332222 111111 1111110111
Q ss_pred CCCCCCCccCCCCCCCccCCHHHHHHHHhhhcCChhhHHHHHHHHHHHHhcCCChhHHHHHHHHhhCCCchHHHHHHHhc
Q psy14582 248 EDAEGTGRKKDKSLHPLDIDAYWLQRRLSKIYDDAMVSQAKAGEVLNILKSAGDDRDAENQLVLLLGYDCFDFIKMLKKY 327 (1689)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 327 (1689)
+... ......+.+||++||||++++.|+++..+|+....+..+|+...++.++|++|+.++.|++|.|+++|.+|
T Consensus 79 el~~-----d~q~t~~~dIda~~LQR~irk~yela~~~Qe~~~k~~~ilr~~~~~~~lE~~L~~ll~~e~~slV~~l~kN 153 (1674)
T KOG0951|consen 79 ELLI-----DAQKTRESDIDAPWLQRKIRKVYELASRLQEKERKAAEILRTASDDGDLEPKLVVLLQFEKISLVEFLRKN 153 (1674)
T ss_pred hhhh-----hhhhcchhhhhHHHHHHHHHHHHhcchhhHHHHHHHHHhHhhccCchhhhHHHHHhhhhhhhHHHHHHHhh
Confidence 1110 11113488999999999999999999999999999999999877999999999999999999999999999
Q ss_pred hhhhhhhhhhccccCHHHHHHhhhhccCC-hhHHHHHHHHhcCCCCCCCcc--chHHHHhhhhhhhccCCCCCCCccccc
Q psy14582 328 RQMILYCTLLASSQSESERQKLRDTMSED-PALAKILRQLDTGKNEDGDAN--DSADARQSTSIRHQMGQGGGDGVAVVA 404 (1689)
Q Consensus 328 r~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (1689)
|++|+|||+|+++..++||-.+++.|+.- |.+..++.++.........+. +...++.+........-...+ ...+.
T Consensus 154 r~~i~~~t~L~~aaresE~~siEe~m~~lgp~l~d~V~~~~a~~~~~~~qeek~~~l~~~e~~~~~~~~ls~td-~~~v~ 232 (1674)
T KOG0951|consen 154 RLGIVWCTRLARAARESERLSIEEIMRFLGPELNDIVAKYIATRQTKSEQEEKEKKLEKREELLVSVIALSKTD-VLGVL 232 (1674)
T ss_pred cchhhHHHHhhhhhccchhccHHHHHhhcChhhHHHHHHHHhhhcccccchhhhhhhhccchhhhhhhhhcccc-ccccc
Confidence 99999999999999999999999999765 788888888765443322211 111111111111111111111 11256
Q ss_pred CCccccCCcccccccCCCccccccccCCCCchhhccCCCceEecCCCCCCCCCCCCCccCCCCccHHHHHhccCCCCCCH
Q psy14582 405 GTRQVLDLEDLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNR 484 (1689)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~~~~~~~yeev~vp~~~~~p~~~~~~l~~~~~Lp~~~~~~f~g~~~~tp 484 (1689)
..++++|++.+.|.+|++.|++.+|.||+|+.+...++|++++||++++.|+...+.+..+..||+|.+.+|.|+.++|+
T Consensus 233 ~~~~~iDLekt~ftEGe~lm~e~~c~lP~GS~rl~kk~yeevhVPa~~~~pf~~~Ekl~~iselP~Wnq~aF~g~~sLNr 312 (1674)
T KOG0951|consen 233 EMRPVIDLEKTCFTEGEELMQEGKCKLPQGSFRLKKKGYEEVHVPAPSYFPFHKEEKLVKISELPKWNQPAFFGKQSLNR 312 (1674)
T ss_pred ccCcccchhhhhhhhhhhhhccCceecCCccEEEecCCceEEeCCCCCCCCCCccceeEeecCCcchhhhhcccchhhhH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccccchhhc
Q psy14582 485 IQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLL 564 (1689)
Q Consensus 485 iQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll 564 (1689)
||+++++.|+...+|+++|||||+|||+++++.||+.+.++.+.+|..+...++++|++||++||+++++.|++++
T Consensus 313 IQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRl---- 388 (1674)
T KOG0951|consen 313 IQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRL---- 388 (1674)
T ss_pred HHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhc----
Confidence 9999999999889999999999999999999999999999998888888999999999999999999999998877
Q ss_pred cCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHH-HHHHHHhhCCCCCceeecCCCccccceeEEEEechhhHHH
Q psy14582 565 HDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYK-DVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALK 643 (1689)
Q Consensus 565 ~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~-~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~l~ 643 (1689)
.+++ .|.+. || +.+++
T Consensus 389 -----------------------------------a~~GI~V~El------Tg----------------------D~~l~ 405 (1674)
T KOG0951|consen 389 -----------------------------------APLGITVLEL------TG----------------------DSQLG 405 (1674)
T ss_pred -----------------------------------cccCcEEEEe------cc----------------------cccch
Confidence 3323 33333 44 88888
Q ss_pred HHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCcccchhhhhhhccccCCcce
Q psy14582 644 RFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHV 723 (1689)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~ 723 (1689)
+.+++ ++|+||+| |+ +||.++|
T Consensus 406 ~~qie-------------eTqVIV~T--------PE-K~DiITR------------------------------------ 427 (1674)
T KOG0951|consen 406 KEQIE-------------ETQVIVTT--------PE-KWDIITR------------------------------------ 427 (1674)
T ss_pred hhhhh-------------cceeEEec--------cc-hhhhhhc------------------------------------
Confidence 99999 99999999 99 9999999
Q ss_pred eEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchh
Q psy14582 724 VKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS 803 (1689)
Q Consensus 724 ~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~ 803 (1689)
+|.+.++..+
T Consensus 428 --------------------------------------k~gdraY~ql-------------------------------- 437 (1674)
T KOG0951|consen 428 --------------------------------------KSGDRAYEQL-------------------------------- 437 (1674)
T ss_pred --------------------------------------ccCchhHHHH--------------------------------
Confidence 7888888877
Q ss_pred HHHHHhhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCccc
Q psy14582 804 LVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPV 883 (1689)
Q Consensus 804 L~~q~v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~Rpv 883 (1689)
++++||||+|++||+|||++|++++|+.+..+......|++||||||||++|++.||++++ .++|+|+++|||+
T Consensus 438 -----vrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpv 511 (1674)
T KOG0951|consen 438 -----VRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPV 511 (1674)
T ss_pred -----HHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcC
Confidence 9999999999999999999999999999999999999999999999999999999999998 7799999999999
Q ss_pred ceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHH
Q psy14582 884 ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLR 963 (1689)
Q Consensus 884 pL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~ 963 (1689)
||.|+|+|++.++..+++++||+.||++++++++.+|||||||||++|.++|+.|++.+.+.+.++.|+++++++.++++
T Consensus 512 PL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilr 591 (1674)
T KOG0951|consen 512 PLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILR 591 (1674)
T ss_pred CccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceE
Q psy14582 964 TEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQV 1043 (1689)
Q Consensus 964 ~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~v 1043 (1689)
.++++.++..|+++|++|||+|||||++.+|..+|++|++|+++||
T Consensus 592 tea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvl---------------------------------- 637 (1674)
T KOG0951|consen 592 TEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVL---------------------------------- 637 (1674)
T ss_pred hhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEE----------------------------------
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCcCC
Q psy14582 1044 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLP 1123 (1689)
Q Consensus 1044 LVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 1123 (1689)
|||+|||||||||||+|||+||++|||++|+|.++++.|++||+||||||++|..|+++|++.+++.++|.+++|+++|
T Consensus 638 -vstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLp 716 (1674)
T KOG0951|consen 638 -VSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLP 716 (1674)
T ss_pred -EeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCChhhhhhhHHHHHHHHHHHHHcC
Q psy14582 1124 VESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSG 1203 (1689)
Q Consensus 1124 ieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~~lv~~al~~L~~~~ 1203 (1689)
|||++.++|.|.+||||++| +++.+|+++|++|||||+||.+||++||++++.. |..+++.+.+++|+|+..|+++|
T Consensus 717 iesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~--d~~le~~r~~lvhsa~~ll~~~~ 793 (1674)
T KOG0951|consen 717 IESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEAS--DRLLEQRRADLVHSAATLLDKAG 793 (1674)
T ss_pred ChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcccc--hHHHHHHHhhhHHHHHhhHhhcC
Confidence 99999999999999999999 9999999999999999999999999999998865 88899999999999999999999
Q ss_pred CceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCChHHHHHHHHHHhhCCCCC
Q psy14582 1204 LIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPI 1283 (1689)
Q Consensus 1204 ~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~~E~~~l~~l~~~~p~~~ 1283 (1689)
+|.||+.+|.+++|++|+|||+|||.|.+|..|++.|+++|+++++++++++|.||++++||++|+.+|++|++++|||+
T Consensus 794 li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr~~ek~el~~l~~~vpIpi 873 (1674)
T KOG0951|consen 794 LIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVREEEKMELAKLLERVPIPI 873 (1674)
T ss_pred ccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCccHHHHHHhhhhcccCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCc
Q psy14582 1284 KESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSP 1363 (1689)
Q Consensus 1284 ~~~~~~~~~K~~~Llqa~is~~~l~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~p 1363 (1689)
++++++|++|+|+|||+|||+++++||+|.+||+||.|+|+|++||+|||++.+||+.+|..+++||||+++|||++++|
T Consensus 874 re~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~~l~~ck~v~~r~w~~~~p 953 (1674)
T KOG0951|consen 874 RENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQMALNLCKMVEKRMWPTQTP 953 (1674)
T ss_pred hhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHHHHHhHhHhhhhcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHhcCCCchhhccCChhhhhhhhcCChhhHHHHHHHHhCCcceEEEEeeccccceEEEEEeecCCC
Q psy14582 1364 LRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDF 1443 (1689)
Q Consensus 1364 LrQ~~~i~~~~i~~~~~~~~~~~~l~dl~~~el~~ll~~~~~g~~i~~~~~~~P~l~l~~~~~pi~~~~~~~~~~i~~~~ 1443 (1689)
||||+++|.++++++|++.++|.+++++++.|++++++.|++|+.++.++++||++.+++++|||||+.++|+|+|+|+|
T Consensus 954 lrqf~~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~~vqpitr~~~~~~l~i~~~f 1033 (1674)
T KOG0951|consen 954 LRQFKGCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSAHVQPITRSVYRVELTITPDF 1033 (1674)
T ss_pred hhhcCCCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeeeeeeeeeeeEEEEEEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccceEEEEEeccchh
Q psy14582 1444 QWDEKLHGGSEGFWILVEDVDSE 1466 (1689)
Q Consensus 1444 ~~~~~~~~~~e~~wi~v~d~~~~ 1466 (1689)
.||+++||..|+|||+|||++|+
T Consensus 1034 ~wd~~vh~~~e~F~i~ved~dge 1056 (1674)
T KOG0951|consen 1034 DWDDKVHGSVEPFWIIVEDTDGE 1056 (1674)
T ss_pred cchhhhcccccceEEEEEccCcc
Confidence 99999999999999999999999
No 2
>KOG0952|consensus
Probab=100.00 E-value=1.4e-140 Score=1294.13 Aligned_cols=799 Identities=45% Similarity=0.762 Sum_probs=727.4
Q ss_pred cCCccccCCcccccccCCCccccccccCCCCchhhccCCCceEecCCCCCCCCCCCCCccCCCCccHHHHHhccCCCCCC
Q psy14582 404 AGTRQVLDLEDLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLN 483 (1689)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~~~~~~~yeev~vp~~~~~p~~~~~~l~~~~~Lp~~~~~~f~g~~~~t 483 (1689)
..++.++|-..+.+.. ..++.+.++.+|.|+.+.+++.|+|+.+|+..+.| .....+..++.||...++.|.+|+++|
T Consensus 35 ~~~~~vf~~~~~~~~~-~~~~~~~k~~lp~~~~r~~~~~~eE~~~P~s~~~~-~~~~k~~~isdld~~~rk~~f~f~~fN 112 (1230)
T KOG0952|consen 35 IYYPHVFESRGLGMTD-AIFIIGIKFTLPEGSEREDYKTYEEVKIPASVPMP-MDGEKLLSISDLDDVGRKGFFSFEEFN 112 (1230)
T ss_pred ccchhHHHhhhhccch-hhhhccceEeccCCccccccCcceEEecCccCCCc-cccccceeEEecchhhhhhcccHHHHH
Confidence 4456777766665543 23456679999999999999999999999988887 556778899999999997777999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccccchhh
Q psy14582 484 RIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHL 563 (1689)
Q Consensus 484 piQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~kde~hl 563 (1689)
.+|+.++|.|+++++|+|+|||||||||.+|+|+||+.|..+. ..+.+..+++|+||||||||||++++..|.+++
T Consensus 113 ~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~-~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl--- 188 (1230)
T KOG0952|consen 113 RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHE-EQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKL--- 188 (1230)
T ss_pred HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhc-cccccccCCceEEEEechHHHHHHHHHHHhhhc---
Confidence 9999999999999999999999999999999999999998743 336778899999999999999999999998877
Q ss_pred ccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHH-HHHHHHhhCCCCCceeecCCCccccceeEEEEechhhHH
Q psy14582 564 LHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYK-DVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKAL 642 (1689)
Q Consensus 564 l~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~-~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~l 642 (1689)
.+.+ .|.++ || +.++
T Consensus 189 ------------------------------------~~~gi~v~EL------TG----------------------D~ql 204 (1230)
T KOG0952|consen 189 ------------------------------------APLGISVREL------TG----------------------DTQL 204 (1230)
T ss_pred ------------------------------------ccccceEEEe------cC----------------------cchh
Confidence 2222 33333 55 8889
Q ss_pred HHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCcccchhhhhhhccccCCcc
Q psy14582 643 KRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDH 722 (1689)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~ 722 (1689)
.+.+++ ++||||+| || |||..+|
T Consensus 205 ~~tei~-------------~tqiiVTT--------PE-KwDvvTR----------------------------------- 227 (1230)
T KOG0952|consen 205 TKTEIA-------------DTQIIVTT--------PE-KWDVVTR----------------------------------- 227 (1230)
T ss_pred hHHHHH-------------hcCEEEec--------cc-ceeeeee-----------------------------------
Confidence 988888 99999999 99 9999999
Q ss_pred eeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccch
Q psy14582 723 VVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR 802 (1689)
Q Consensus 723 ~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r 802 (1689)
.+.|-+-.+-
T Consensus 228 ---------------------------------------k~~~d~~l~~------------------------------- 237 (1230)
T KOG0952|consen 228 ---------------------------------------KSVGDSALFS------------------------------- 237 (1230)
T ss_pred ---------------------------------------eeccchhhhh-------------------------------
Confidence 3333321111
Q ss_pred hHHHHHhhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcc
Q psy14582 803 SLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRP 882 (1689)
Q Consensus 803 ~L~~q~v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~Rp 882 (1689)
.|+|+||||+|+|+|+||+++|.|++|++++.+..+..+||||||||+||++|+|.||++++..++|+|+..|||
T Consensus 238 -----~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRP 312 (1230)
T KOG0952|consen 238 -----LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRP 312 (1230)
T ss_pred -----heeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccc
Confidence 199999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHH
Q psy14582 883 VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAG-RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEV 961 (1689)
Q Consensus 883 vpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~-~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~ 961 (1689)
+|+++.++|.+.++.......+.+.+|+++.+... ++|++||||+|+.|.++|+.|.+.+...+....|++.
T Consensus 313 vpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~------- 385 (1230)
T KOG0952|consen 313 VPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPS------- 385 (1230)
T ss_pred cceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCC-------
Confidence 99999999998875555567888999999988654 7899999999999999999999988766665555542
Q ss_pred HHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccc
Q psy14582 962 LRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHI 1041 (1689)
Q Consensus 962 l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i 1041 (1689)
..++.|++++++|+|+|||||.+.||..+|+.|..|.++||
T Consensus 386 -------~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL-------------------------------- 426 (1230)
T KOG0952|consen 386 -------PRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVL-------------------------------- 426 (1230)
T ss_pred -------hhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEE--------------------------------
Confidence 25678999999999999999999999999999999999999
Q ss_pred eEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCc
Q psy14582 1042 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQ 1121 (1689)
Q Consensus 1042 ~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~ 1121 (1689)
|||+||||||||||+.||||||+.||+.+|+++++++.|++|++|||||||||..|.++|+|+++++++|.++++++
T Consensus 427 ---~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~ 503 (1230)
T KOG0952|consen 427 ---CCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQ 503 (1230)
T ss_pred ---EecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCChhhhhhhHHHHHHHHHHHHH
Q psy14582 1122 LPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLER 1201 (1689)
Q Consensus 1122 ~pieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~~lv~~al~~L~~ 1201 (1689)
.||||+|..+|+|+|||||++|||.|+++||+||+|||+|+||.+||..||+..+.+..||.++.++.+++..++..|.+
T Consensus 504 ~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~ 583 (1230)
T KOG0952|consen 504 NPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDK 583 (1230)
T ss_pred ChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCChHHHHHHHHHHhhCCC
Q psy14582 1202 SGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPI 1281 (1689)
Q Consensus 1202 ~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~~E~~~l~~l~~~~p~ 1281 (1689)
.+||.+|.+++.+.+|++||+||+|||+|+||+.|++..++.+++.++|+++|+|+||+.|.+|++|+.+|+.|++..-.
T Consensus 584 ~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~~ 663 (1230)
T KOG0952|consen 584 VQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKELNEDSCE 663 (1230)
T ss_pred hheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876322
Q ss_pred CCCCCCCChhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCC
Q psy14582 1282 PIKESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSM 1361 (1689)
Q Consensus 1282 ~~~~~~~~~~~K~~~Llqa~is~~~l~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~ 1361 (1689)
...-+. .+.|+|+|+|+||||-.+..|+|++|..|+.|||+||.||+|+++..++|+.++..++.|||||+++||...
T Consensus 664 ~~~~~~--~~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~ier~mw~~~ 741 (1230)
T KOG0952|consen 664 KYPFGG--EKGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRIERRMWDFF 741 (1230)
T ss_pred cccccc--cchhHHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhh
Confidence 111112 289999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCHHHHHHHHhcCCCchhhccCChhhhhhhhcCChhhHHHHHHHHhCCcceEEEEeeccccceEEEEEeecC
Q psy14582 1362 SPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISP 1441 (1689)
Q Consensus 1362 ~pLrQ~~~i~~~~i~~~~~~~~~~~~l~dl~~~el~~ll~~~~~g~~i~~~~~~~P~l~l~~~~~pi~~~~~~~~~~i~~ 1441 (1689)
+||+||+.... +| +++.. ++.+|...++|++.++.++| ++.++.+|.+++++.++|+|++++++.+.++|
T Consensus 742 ~~l~qf~~~~~---~~-~~~~~---~l~~L~~~~~g~~w~~~~~~---~k~l~~ip~v~v~a~~~p~t~~vlri~~~~~~ 811 (1230)
T KOG0952|consen 742 IPLKQFTLLLN---RK-ERKKL---TLLLLRKDELGELWHNVPYG---LKQLSGIPLVNVEALIQPITRNVLRIEVAITP 811 (1230)
T ss_pred hhhhcCCcccc---hh-hhhcc---hHHhhhhhhhccccccCchh---hhhhccCCceehhhhhccchhhhheeeeccCC
Confidence 99999998776 45 55543 88999999999999999998 89999999999999999999999999999999
Q ss_pred CCccCcccccccceEEEEEeccchh
Q psy14582 1442 DFQWDEKLHGGSEGFWILVEDVDSE 1466 (1689)
Q Consensus 1442 ~~~~~~~~~~~~e~~wi~v~d~~~~ 1466 (1689)
+|+|++.+||+...+ ||++|.+..
T Consensus 812 ~f~w~~~~hg~~g~~-i~~ed~~~~ 835 (1230)
T KOG0952|consen 812 DFEWNDGIHGKAGQP-IFKEDSSLL 835 (1230)
T ss_pred ceEEecccccccCce-eEeecCCCC
Confidence 999999999998777 999999866
No 3
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.2e-84 Score=854.88 Aligned_cols=659 Identities=25% Similarity=0.345 Sum_probs=523.2
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+||+++.+++. ||++|+|+|.++++..+.+|+|++++||||||||++|.+|+++.+.. +.++||++|
T Consensus 7 ~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----------~~kal~i~P 75 (737)
T PRK02362 7 PLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----------GGKALYIVP 75 (737)
T ss_pred CCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----------CCcEEEEeC
Confidence 47999999987 89999999999999867689999999999999999999999998852 348999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
||+||.|++..|.+-. ..+.++..+++-..
T Consensus 76 ~raLa~q~~~~~~~~~--------------------------~~g~~v~~~tGd~~------------------------ 105 (737)
T PRK02362 76 LRALASEKFEEFERFE--------------------------ELGVRVGISTGDYD------------------------ 105 (737)
T ss_pred hHHHHHHHHHHHHHhh--------------------------cCCCEEEEEeCCcC------------------------
Confidence 9999999997664210 00122222211110
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
..... .+..+|+|+| |+ +|+...+
T Consensus 106 -----------------~~~~~-------------l~~~~IiV~T--------pe-k~~~llr----------------- 129 (737)
T PRK02362 106 -----------------SRDEW-------------LGDNDIIVAT--------SE-KVDSLLR----------------- 129 (737)
T ss_pred -----------------ccccc-------------cCCCCEEEEC--------HH-HHHHHHh-----------------
Confidence 00000 1267899999 99 8987766
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
.+. .. +
T Consensus 130 ---------------------------------------------------------~~~--~~------l--------- 135 (737)
T PRK02362 130 ---------------------------------------------------------NGA--PW------L--------- 135 (737)
T ss_pred ---------------------------------------------------------cCh--hh------h---------
Confidence 100 00 0
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT 863 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~ 863 (1689)
+.++++|+||+|++++ .||+.+|.+++|+++ ..+.+|+|+||||++|++++++
T Consensus 136 ----------------------~~v~lvViDE~H~l~d~~rg~~le~il~rl~~----~~~~~qii~lSATl~n~~~la~ 189 (737)
T PRK02362 136 ----------------------DDITCVVVDEVHLIDSANRGPTLEVTLAKLRR----LNPDLQVVALSATIGNADELAD 189 (737)
T ss_pred ----------------------hhcCEEEEECccccCCCcchHHHHHHHHHHHh----cCCCCcEEEEcccCCCHHHHHH
Confidence 0189999999999998 799999999998754 3567899999999999999999
Q ss_pred HhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhh----HHHHHHHHHH-hCCCeEEEEeCChHHHHHHHHHH
Q psy14582 864 LLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMN----DIVYEKVMEH-AGRNQLLVFVHSRKETGKTARAI 938 (1689)
Q Consensus 864 ~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~----~~~~~~i~~~-~~~~~vLVFv~srk~~~~~a~~L 938 (1689)
|+++. .|...+||+++...+..............+. ...+..+... ..++++||||+||+.|+.+|..|
T Consensus 190 wl~~~------~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L 263 (737)
T PRK02362 190 WLDAE------LVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRA 263 (737)
T ss_pred HhCCC------cccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHH
Confidence 99865 3568899999876553221100000000000 1222223222 24689999999999999999999
Q ss_pred HHhhhhccccchhhhcCchhHHHHHHh-------hhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEE
Q psy14582 939 RDMCLEKDTLGQFLREGSASMEVLRTE-------ADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVS 1011 (1689)
Q Consensus 939 ~~~~~~~~~l~~fl~~~~~~~e~l~~~-------~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVa 1011 (1689)
........ .. .....+... .....+..|++++..||++|||||++.+|..|+++|++|.++||
T Consensus 264 ~~~~~~~~-----~~---~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VL-- 333 (737)
T PRK02362 264 ASALKKTL-----TA---AERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVI-- 333 (737)
T ss_pred HHHhhhcC-----CH---HHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEE--
Confidence 87543110 00 011111111 11224567899999999999999999999999999999999999
Q ss_pred cchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhccc
Q psy14582 1012 TATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRA 1091 (1689)
Q Consensus 1012 T~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRA 1091 (1689)
|||+|||||||+|+++|||+||++||+.. ++.++++.+|+||+|||
T Consensus 334 ---------------------------------vaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~~~~s~~~y~Qm~GRA 379 (737)
T PRK02362 334 ---------------------------------SSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYHQMAGRA 379 (737)
T ss_pred ---------------------------------EechhhhhhcCCCceEEEEecceeecCCC-CceeCCHHHHHHHhhcC
Confidence 99999999999999999999999999876 57899999999999999
Q ss_pred CCCCCCCccEEEEEecCC--cHHHHHHHh-hCcCCccccccc--ccccchhhhhhhccccChHHHHHHHhhhhhhhhhcc
Q psy14582 1092 GRPQYDTKGEGVLITNHS--ELQYYLSLL-NHQLPVESQMIS--KLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLR 1166 (1689)
Q Consensus 1092 GR~g~d~~G~~iil~~~~--~~~~y~~ll-~~~~pieS~l~~--~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~ 1166 (1689)
||+|+|..|.+++++.+. ..++|.+++ .++.|++|+|.. .+.+++|++|+.|++.+.+|+++|++|||+|++.
T Consensus 380 GR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~-- 457 (737)
T PRK02362 380 GRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQT-- 457 (737)
T ss_pred CCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhc--
Confidence 999999999999999875 345678887 488999999954 6999999999999999999999999999999752
Q ss_pred CCcccCCCcccccCChhhhhhhHHHHHHHHHHHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCC--
Q psy14582 1167 APNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTL-- 1244 (1689)
Q Consensus 1167 nP~~Yg~~~~~~~~d~~l~~~~~~lv~~al~~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~-- 1244 (1689)
. ..++++++|++++..|.++|||+.+ ++.+.+|++|+++|+|||+|.|+..|.+.|+...
T Consensus 458 ----------~------~~~~l~~~v~~~l~~L~~~~~i~~~--~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~ 519 (737)
T PRK02362 458 ----------D------DTGRLERVVDDVLDFLERNGMIEED--GETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKP 519 (737)
T ss_pred ----------c------chHHHHHHHHHHHHHHHHCCCeeec--CCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccC
Confidence 0 1356789999999999999999975 3579999999999999999999999999998764
Q ss_pred CHHHHHHHHhcCcccccCcCChHHHHHHHHHH--------hhCCCCCCC-CCCC--hhHHHHHHHHHHHhccCCC----C
Q psy14582 1245 SEIELFRVFSLSGEFRHITVREEEKLELQKLM--------ERAPIPIKE-STDE--PSAKVNILLQAYISQLKLE----G 1309 (1689)
Q Consensus 1245 ~~~~ll~i~s~s~Ef~~i~vR~~E~~~l~~l~--------~~~p~~~~~-~~~~--~~~K~~~Llqa~is~~~l~----~ 1309 (1689)
++.++|+++|.++||+.+++|++|...|.++. .++|.+.+. ..+. |+.|+++|||+||++.+++ .
T Consensus 520 ~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~ 599 (737)
T PRK02362 520 TDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITER 599 (737)
T ss_pred chHHHHHHhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 78899999999999999999999999998875 455665443 2233 8899999999999999954 3
Q ss_pred chh-hhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhcCC-Cchh
Q psy14582 1310 FAL-MSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNF-PWER 1387 (1689)
Q Consensus 1310 ~~l-~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~~~i~~~~i~~~~~~~~-~~~~ 1387 (1689)
|.+ .+|+..++++|.||++|+++||.. +|..++..+++|++|+.+++|++.+||.|+||+++..+++|.+.|+ ++++
T Consensus 600 ~~~~~gdl~~~~~~~~~l~~a~~~i~~~-~~~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~gi~s~~d 678 (737)
T PRK02362 600 YGVGPGDIRGKVETAEWLLHAAERLASE-LDLDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAGIESRAD 678 (737)
T ss_pred hCCCchHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcCCCCHHH
Confidence 445 689999999999999999999766 5667899999999999999999999999999999999999999998 7888
Q ss_pred hccCChhhhhhhhcCChhhHHHHHHHH
Q psy14582 1388 LYDLGPNEIGELIRVPKLGKTIHKYVH 1414 (1689)
Q Consensus 1388 l~dl~~~el~~ll~~~~~g~~i~~~~~ 1414 (1689)
+..+++.++..+++ .+..+.|.+.+.
T Consensus 679 l~~~~~~~l~~~~g-~~~~~~i~~~~~ 704 (737)
T PRK02362 679 LRAADKSVVLAILG-EKIAENILEQAG 704 (737)
T ss_pred HHhCCHHHHHHHHC-HHHHHHHHHHhC
Confidence 88888888888821 133344444444
No 4
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=9.4e-81 Score=818.58 Aligned_cols=655 Identities=24% Similarity=0.358 Sum_probs=507.5
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.+|+.+.+.+. ||++|||+|.++++..+.+|+|+++|||||||||++|.+|+++.+.. .+.++||++|
T Consensus 7 ~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~----------~~~~~l~l~P 76 (720)
T PRK00254 7 RVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR----------EGGKAVYLVP 76 (720)
T ss_pred CCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh----------cCCeEEEEeC
Confidence 47888888886 99999999999999766689999999999999999999999998763 2348999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
||+||.|++..|.+-. .-+.++..+++-..
T Consensus 77 ~~aLa~q~~~~~~~~~--------------------------~~g~~v~~~~Gd~~------------------------ 106 (720)
T PRK00254 77 LKALAEEKYREFKDWE--------------------------KLGLRVAMTTGDYD------------------------ 106 (720)
T ss_pred hHHHHHHHHHHHHHHh--------------------------hcCCEEEEEeCCCC------------------------
Confidence 9999999996653200 00112222211110
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
..... .+.++|+|+| |+ +|+...+.
T Consensus 107 -----------------~~~~~-------------~~~~~IiV~T--------pe-~~~~ll~~---------------- 131 (720)
T PRK00254 107 -----------------STDEW-------------LGKYDIIIAT--------AE-KFDSLLRH---------------- 131 (720)
T ss_pred -----------------Cchhh-------------hccCCEEEEc--------HH-HHHHHHhC----------------
Confidence 00000 1267899999 99 88876551
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
+. .. +
T Consensus 132 ----------------------------------------------------------~~--~~------l--------- 136 (720)
T PRK00254 132 ----------------------------------------------------------GS--SW------I--------- 136 (720)
T ss_pred ----------------------------------------------------------Cc--hh------h---------
Confidence 00 00 0
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT 863 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~ 863 (1689)
+.++++|+||+|++++ .+|+.++.+++++ ...+|+|++|||++|++++++
T Consensus 137 ----------------------~~l~lvViDE~H~l~~~~rg~~le~il~~l-------~~~~qiI~lSATl~n~~~la~ 187 (720)
T PRK00254 137 ----------------------KDVKLVVADEIHLIGSYDRGATLEMILTHM-------LGRAQILGLSATVGNAEELAE 187 (720)
T ss_pred ----------------------hcCCEEEEcCcCccCCccchHHHHHHHHhc-------CcCCcEEEEEccCCCHHHHHH
Confidence 0189999999999987 7999999998874 357899999999999999999
Q ss_pred HhhcCCCccEEEecCCCcccceEEEEE--e---echhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q psy14582 864 LLRIKPETGLFYFDNSFRPVALEQQYI--G---VTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAI 938 (1689)
Q Consensus 864 ~L~~~~~~~~~~f~~~~RpvpL~~~~~--~---~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L 938 (1689)
|+++.. +...+||+|+...+. + ............+...+++.+. .++++||||+||+.|+.+|..|
T Consensus 188 wl~~~~------~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l 258 (720)
T PRK00254 188 WLNAEL------VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK---KGKGALVFVNTRRSAEKEALEL 258 (720)
T ss_pred HhCCcc------ccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH---hCCCEEEEEcChHHHHHHHHHH
Confidence 998752 457789999864332 1 1111111111334455555443 3679999999999999999998
Q ss_pred HHhhhhccccchhhhcCchhHHHHHHhh----hhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcch
Q psy14582 939 RDMCLEKDTLGQFLREGSASMEVLRTEA----DQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTAT 1014 (1689)
Q Consensus 939 ~~~~~~~~~l~~fl~~~~~~~e~l~~~~----~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~v 1014 (1689)
...... ++.. ...+.+.... ....+..|++++.+||++|||||++.+|..++++|++|.++||
T Consensus 259 ~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VL----- 325 (720)
T PRK00254 259 AKKIKR------FLTK--PELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVI----- 325 (720)
T ss_pred HHHHHH------hcCc--hhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEE-----
Confidence 764321 1110 0111112222 2234677889999999999999999999999999999999999
Q ss_pred hccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCC
Q psy14582 1015 LAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRP 1094 (1689)
Q Consensus 1015 l~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~ 1094 (1689)
|||+||+||||+|++.|||++|+.|+. .++.++++.+|+||+|||||+
T Consensus 326 ------------------------------vaT~tLa~Gvnipa~~vVI~~~~~~~~--~~~~~~~~~~~~Qm~GRAGR~ 373 (720)
T PRK00254 326 ------------------------------TATPTLSAGINLPAFRVIIRDTKRYSN--FGWEDIPVLEIQQMMGRAGRP 373 (720)
T ss_pred ------------------------------EeCcHHhhhcCCCceEEEECCceEcCC--CCceeCCHHHHHHhhhccCCC
Confidence 999999999999999999999999973 457889999999999999999
Q ss_pred CCCCccEEEEEecCCc-HHHHHHHhh-CcCCcccccc--cccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcc
Q psy14582 1095 QYDTKGEGVLITNHSE-LQYYLSLLN-HQLPVESQMI--SKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNL 1170 (1689)
Q Consensus 1095 g~d~~G~~iil~~~~~-~~~y~~ll~-~~~pieS~l~--~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~ 1170 (1689)
|+|..|.+++++...+ ..+|.+++. .+.++.|.+. +.|.++++++|+.|++.+.+|+++||+|||+|+ +||++
T Consensus 374 ~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~---~~~~~ 450 (720)
T PRK00254 374 KYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH---QRKDL 450 (720)
T ss_pred CcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH---hhcCh
Confidence 9999999999998765 456666643 2333444432 235789999999999999999999999999995 47877
Q ss_pred cCCCcccccCChhhhhhhHHHHHHHHHHHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCC---CCCHH
Q psy14582 1171 YGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKP---TLSEI 1247 (1689)
Q Consensus 1171 Yg~~~~~~~~d~~l~~~~~~lv~~al~~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~---~~~~~ 1247 (1689)
|++ .+++++++..|.+++||+.+. ++.+.+|++|+++|+|||+|.|+..|.+.|+. .+++.
T Consensus 451 ~~~---------------~~~v~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~ 514 (720)
T PRK00254 451 YSL---------------EEKAKEIVYFLLENEFIDIDL-EDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPL 514 (720)
T ss_pred HhH---------------HHHHHHHHHHHHHCCCeEEcC-CCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHH
Confidence 642 246888999999999999864 45799999999999999999999999999876 67889
Q ss_pred HHHHHHhcCcccccCcCChHHHHHHHH--------HHhhCCCCCCCCCCC--hhHHHHHHHHHHHhccCCCCchh-----
Q psy14582 1248 ELFRVFSLSGEFRHITVREEEKLELQK--------LMERAPIPIKESTDE--PSAKVNILLQAYISQLKLEGFAL----- 1312 (1689)
Q Consensus 1248 ~ll~i~s~s~Ef~~i~vR~~E~~~l~~--------l~~~~p~~~~~~~~~--~~~K~~~Llqa~is~~~l~~~~l----- 1312 (1689)
++|+++|.++||..+++|++|...|.. +..++|++....... |+.|+++|||+|||+.+++. .+
T Consensus 515 ~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~-~~~~~~~ 593 (720)
T PRK00254 515 GIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGE-IVETYNI 593 (720)
T ss_pred HHHHHhhCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHhCC
Confidence 999999999999999999999988883 334444432222333 88999999999999998653 33
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhcCC-Cchhhc
Q psy14582 1313 -MSDMVFVTQSAARLMRAIFEIVLYRGWA-QLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNF-PWERLY 1389 (1689)
Q Consensus 1313 -~~d~~~i~~~a~rl~~a~~ei~~~~~~~-~~a~~~l~L~k~i~~~~W~~~~pLrQ~~~i~~~~i~~~~~~~~-~~~~l~ 1389 (1689)
.+|+..++++|.||++|+++|+...||. .....+.+|++||.+++|...+||.|+||+++..+++|-++|+ +++++.
T Consensus 594 ~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~~~~~~l~~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g~~s~~~i~ 673 (720)
T PRK00254 594 DPGDLYRILELADWLMYSLIELYKLFEPKQEVLDYLETLHLRVKHGVREELLELMRLPMIGRKRARALYNAGFRSIEDIV 673 (720)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHccCCCHHHHH
Confidence 5899999999999999999999966653 2233444899999999999999999999999999999999998 788888
Q ss_pred cCChhhhhhhhcCC-hhhHHHHHHHH
Q psy14582 1390 DLGPNEIGELIRVP-KLGKTIHKYVH 1414 (1689)
Q Consensus 1390 dl~~~el~~ll~~~-~~g~~i~~~~~ 1414 (1689)
.++++++..+.+.. +.++.|++.++
T Consensus 674 ~a~~~el~~~~gi~~~~a~~i~~~~~ 699 (720)
T PRK00254 674 NAKPSELLKVEGIGAKIVEGIFKHLG 699 (720)
T ss_pred hCCHHHHhcCCCCCHHHHHHHHHHhc
Confidence 88888877664443 34555666655
No 5
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=5.4e-82 Score=812.11 Aligned_cols=726 Identities=34% Similarity=0.439 Sum_probs=584.7
Q ss_pred ccHHHHHhcc--CCCCC-CHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 468 LPRYVQHAFE--DFKTL-NRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 468 Lp~~~~~~f~--g~~~~-tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+++.+...++ ++.++ +|+|+.+.+.++ .|+|+|+|||||||||+++++.|++.+... +.++|||+|
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~-~~~N~li~aPTgsGKTlIA~lai~~~l~~~----------~~k~vYivP 84 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLL-SDENVLISAPTGSGKTLIALLAILSTLLEG----------GGKVVYIVP 84 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhcccc-CCCcEEEEcCCCCchHHHHHHHHHHHHHhc----------CCcEEEEeC
Confidence 5666666665 66444 455555555555 599999999999999999999999999853 469999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
||+||.|++.+|.+-+ .-+.++... +|
T Consensus 85 lkALa~Ek~~~~~~~~--------------------------~~GirV~~~-------------------Tg-------- 111 (766)
T COG1204 85 LKALAEEKYEEFSRLE--------------------------ELGIRVGIS-------------------TG-------- 111 (766)
T ss_pred hHHHHHHHHHHhhhHH--------------------------hcCCEEEEe-------------------cC--------
Confidence 9999999998886211 001111111 22
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
+.....+.+. +++|+|+| |+ +||..+|.
T Consensus 112 --------------D~~~~~~~l~-------------~~~ViVtT--------~E-K~Dsl~R~---------------- 139 (766)
T COG1204 112 --------------DYDLDDERLA-------------RYDVIVTT--------PE-KLDSLTRK---------------- 139 (766)
T ss_pred --------------Ccccchhhhc-------------cCCEEEEc--------hH-HhhHhhhc----------------
Confidence 4444445555 99999999 99 99999881
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
..+ +...
T Consensus 140 ----------------------------------------------------------~~~--~~~~------------- 146 (766)
T COG1204 140 ----------------------------------------------------------RPS--WIEE------------- 146 (766)
T ss_pred ----------------------------------------------------------Ccc--hhhc-------------
Confidence 111 1111
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecCC-chhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT 863 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d~-rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~ 863 (1689)
|+++|+||+|+++|. ||+++|.+++|+++. ...+||+|||||+||+.++|.
T Consensus 147 ------------------------V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~----~~~~rivgLSATlpN~~evA~ 198 (766)
T COG1204 147 ------------------------VDLVVIDEIHLLGDRTRGPVLESIVARMRRL----NELIRIVGLSATLPNAEEVAD 198 (766)
T ss_pred ------------------------ccEEEEeeeeecCCcccCceehhHHHHHHhh----CcceEEEEEeeecCCHHHHHH
Confidence 999999999999996 999999999998753 445899999999999999999
Q ss_pred HhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHhh
Q psy14582 864 LLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHA-GRNQLLVFVHSRKETGKTARAIRDMC 942 (1689)
Q Consensus 864 ~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~-~~~~vLVFv~srk~~~~~a~~L~~~~ 942 (1689)
||++++....+.|.+.+|+++..+.+.+.....+ ..-......++..+.... .++|+|||||||+.|..+|+.+....
T Consensus 199 wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~ 277 (766)
T COG1204 199 WLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKM 277 (766)
T ss_pred HhCCcccccCCCCcccccCCccceEEEEecCccc-cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHH
Confidence 9999987778899999999999999988875543 111222334555555544 46899999999999999999999644
Q ss_pred hhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCC
Q psy14582 943 LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 943 ~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp 1022 (1689)
.....-..+........+....+.....+..|+++++.|+|||||||++.+|..+|+.|+.|.++||
T Consensus 278 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVl------------- 344 (766)
T COG1204 278 SATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVL------------- 344 (766)
T ss_pred hhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEE-------------
Confidence 3322222222222222222223344445578999999999999999999999999999999999999
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
|||+||||||||||++|||+||+.||+..| ++++++.|++||+|||||||+|..|.+
T Consensus 345 ----------------------v~TpTLA~GVNLPA~~VIIk~~~~y~~~~g-~~~i~~~dv~QM~GRAGRPg~d~~G~~ 401 (766)
T COG1204 345 ----------------------VSTPTLAAGVNLPARTVIIKDTRRYDPKGG-IVDIPVLDVLQMAGRAGRPGYDDYGEA 401 (766)
T ss_pred ----------------------EechHHhhhcCCcceEEEEeeeEEEcCCCC-eEECchhhHhhccCcCCCCCcCCCCcE
Confidence 999999999999999999999999999544 999999999999999999999999999
Q ss_pred EEEe-cCCcHHHHHHHhhCcCCcccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCC
Q psy14582 1103 VLIT-NHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKED 1181 (1689)
Q Consensus 1103 iil~-~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d 1181 (1689)
++++ ++.+..++......+.|.+ +.+.|.+..|++..++++.+..++++|+.+||+|+|+..||.+|+..
T Consensus 402 ~i~~~~~~~~~~~~~~~~~~~~e~--~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~------- 472 (766)
T COG1204 402 IILATSHDELEYLAELYIQSEPEP--IESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEG------- 472 (766)
T ss_pred EEEecCccchhHHHHHhhccCcch--HHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhcccc-------
Confidence 9999 4556666666666655544 55556666699999999999999999999999999999999998762
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCC---CHHHHHHHHhcCcc
Q psy14582 1182 PLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTL---SEIELFRVFSLSGE 1258 (1689)
Q Consensus 1182 ~~l~~~~~~lv~~al~~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~---~~~~ll~i~s~s~E 1258 (1689)
.....+..++..|.+.+ +..+.....+.+|++|+.+|+|||++.|+..|...+.... ++.++|.+++.++|
T Consensus 473 -----~~~~~i~~~~~~L~~~~-~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd 546 (766)
T COG1204 473 -----MLREEILASLRYLEENG-LILDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPD 546 (766)
T ss_pred -----chHHHHHHHHHHHHhcc-ceeeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCcc
Confidence 12356888999999997 2233445779999999999999999999999999887654 78999999999999
Q ss_pred cccCcCChHHHHHH--HHHHhhCCCCCCCCCCChhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHh
Q psy14582 1259 FRHITVREEEKLEL--QKLMERAPIPIKESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLY 1336 (1689)
Q Consensus 1259 f~~i~vR~~E~~~l--~~l~~~~p~~~~~~~~~~~~K~~~Llqa~is~~~l~~~~l~~d~~~i~~~a~rl~~a~~ei~~~ 1336 (1689)
|..+++|.++..++ ..+.+..++...+....+..|.+.++|++.+...+..|....|..+|.++.++..++++.++..
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~ 626 (766)
T COG1204 547 LMPIKLRERESSELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAET 626 (766)
T ss_pred chhhhhhhhhhhhhhHHHHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcch
Confidence 99999999999885 5566677877777788899999999999999999998999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhcCCCchhhccCC-hhhhhhhhcCChhhHHHHHHHHh
Q psy14582 1337 RGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLG-PNEIGELIRVPKLGKTIHKYVHQ 1415 (1689)
Q Consensus 1337 ~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~~~i~~~~i~~~~~~~~~~~~l~dl~-~~el~~ll~~~~~g~~i~~~~~~ 1415 (1689)
..|. .+. +..||+++.++.|...+++.|+ .+++.+..+++. ++.-+.+.++. ...++. ++..+..+...+.++.
T Consensus 627 a~w~-~~~-~~~l~~~~~r~~~~~~~~~~~~-~~~~~~~~rie~-gv~~e~~~~l~~i~~~gr-vrar~ly~~g~~~~~~ 701 (766)
T COG1204 627 AEWL-SAD-LLALGKAAERLAKILGLGLHVL-RKLEILSLRIEY-GVRSEELLELVEIRGVGR-VRARKLYNAGYKSLED 701 (766)
T ss_pred hhhh-hhh-hhhhhhhhhhhHhhhCCCcccc-ccchhhhhhhhc-CCChhhhcccccccccch-hHHHHHHHhhhccHHH
Confidence 9999 555 9999999999999999999999 777777777654 43226666664 344444 7777777888888888
Q ss_pred CCcceEEEEeeccccceEEEEEeecCCCccCcccccccceEEEEEeccchhh
Q psy14582 1416 FPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEA 1467 (1689)
Q Consensus 1416 ~P~l~l~~~~~pi~~~~~~~~~~i~~~~~~~~~~~~~~e~~wi~v~d~~~~~ 1467 (1689)
+|.......+.|++....++.-.|.+.+.|+...|+..+-||+.+.+.++..
T Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (766)
T COG1204 702 LRLIADPAELLPLTGIGERLVEAILESLGRDVLLSGRAYFFSIEVRELDLLY 753 (766)
T ss_pred HHhhcChhhhhhhhhhHHHHHHHHHHHhhhhhhcccchhhhcccCccccccc
Confidence 8888778888888887777777889999999999999999999999887763
No 6
>KOG0951|consensus
Probab=100.00 E-value=8.3e-79 Score=753.26 Aligned_cols=496 Identities=37% Similarity=0.637 Sum_probs=443.4
Q ss_pred EeeeeeeeccCCccccccccCCCcceeEEEEeCCCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccc
Q psy14582 668 STLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRW 747 (1689)
Q Consensus 668 ~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~w 747 (1689)
.+.+++++++|+|.||.++||+.|+||++|||.||+.|+||+.|.++++ +|.+.|++|+++| ||+||++++||+|
T Consensus 1021 ~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k~----~~~v~ft~~~~~~-pP~~fi~lvSd~w 1095 (1674)
T KOG0951|consen 1021 SVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKKK----EHTVNFTVPLFEP-PPQYFIRLVSDRW 1095 (1674)
T ss_pred eEEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEeccC----ceEEEEEeecCCC-CCceEEEEeeccc
Confidence 3479999999999999999999999999999999999999999999888 9999999999999 9999999999999
Q ss_pred cccccccceeEe----------------------------------------------------------ecCCCchHHH
Q psy14582 748 IGAETILPVSFR----------------------------------------------------------LPRGAGKTNV 769 (1689)
Q Consensus 748 l~~e~~~pv~~~----------------------------------------------------------aPTGsGKT~~ 769 (1689)
+++++.+|++|+ +|+|+|||.+
T Consensus 1096 l~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ 1175 (1674)
T KOG0951|consen 1096 LHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTAC 1175 (1674)
T ss_pred cCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhhccccCCceEEEEeeeecccceEEEecCCCCchhHH
Confidence 999999999865 5689999999
Q ss_pred HHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHH------------------------------------------
Q psy14582 770 ALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE------------------------------------------ 807 (1689)
Q Consensus 770 ~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q------------------------------------------ 807 (1689)
+.++++.. ....+++|++|..+.+..
T Consensus 1176 ae~a~l~~------------~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe 1243 (1674)
T KOG0951|consen 1176 AELALLRP------------DTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVIISTPE 1243 (1674)
T ss_pred HHHHhcCC------------ccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEEechh
Confidence 99887651 123455555555444332
Q ss_pred ---------HhhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecC
Q psy14582 808 ---------MVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDN 878 (1689)
Q Consensus 808 ---------~v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~ 878 (1689)
.+++.|.||.|++++..|+++|.+++ ++++..+..+++|++++|..+.|++|+ ++..+ .++|+|.+
T Consensus 1244 ~~d~lq~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~---ig~s~-~~v~Nf~p 1318 (1674)
T KOG0951|consen 1244 QWDLLQSIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL---IGASS-SGVFNFSP 1318 (1674)
T ss_pred HHHHHhhhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh---ccccc-cceeecCc
Confidence 48999999999999999999999999 999889999999999999999999998 77664 55999999
Q ss_pred CCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCch
Q psy14582 879 SFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAG-RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSA 957 (1689)
Q Consensus 879 ~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~-~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~ 957 (1689)
+.||+|++.++.+++..+...++.+|.++.|..+.+++. +++.+||+++|+.|..+|..+..++.....
T Consensus 1319 ~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~---------- 1388 (1674)
T KOG0951|consen 1319 SVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEP---------- 1388 (1674)
T ss_pred ccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcH----------
Confidence 999999999999999999999999999999999998876 679999999999999999998876554311
Q ss_pred hHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhh
Q psy14582 958 SMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFA 1037 (1689)
Q Consensus 958 ~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~ 1037 (1689)
..+-.+.+. .+..|++.+++||| |.||+..+...+-.+|..|.|+|+
T Consensus 1389 --~~l~~~~e~-~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~---------------------------- 1435 (1674)
T KOG0951|consen 1389 --DYLLSELEE-CDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVC---------------------------- 1435 (1674)
T ss_pred --HHHHHHHhc-chHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEE----------------------------
Confidence 111122222 56789999999999 999999999999999999999999
Q ss_pred cccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHH
Q psy14582 1038 DRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSL 1117 (1689)
Q Consensus 1038 ~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 1117 (1689)
|.... +||.-+-++.||++||++||+..+.|.+|++.+++||+|+|.| .|.|+|+|..+++.+|++|
T Consensus 1436 -------v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~-----~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1436 -------VMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG-----AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred -------EEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC-----CccEEEEecCchHHHHHHh
Confidence 66666 8999999999999999999999999999999999999999998 4699999999999999999
Q ss_pred hhCcCCcccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCChhhhhhhHHHHHHHHH
Q psy14582 1118 LNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAAL 1197 (1689)
Q Consensus 1118 l~~~~pieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~~lv~~al~ 1197 (1689)
+.+++|+||+|...|+|++|+||++++|.|+|||++||+|||+|+|+..||+|||+..... ..++.++++|+++++.
T Consensus 1503 l~e~lPves~lq~~lhd~~n~ei~~~tienkqd~vd~lt~s~~yrr~~~np~yy~l~~v~~---~~~S~~lS~lvet~l~ 1579 (1674)
T KOG0951|consen 1503 LYEPLPVESHLQHCLHDNFNAEIVTKTIENKQDAVDYLTWSFMYRRLPQNPNYYNLQGVSH---RHLSDFLSELVETTLN 1579 (1674)
T ss_pred ccCcCchHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccccCcceecccccch---hhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999866542 3588999999999999
Q ss_pred HHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHH
Q psy14582 1198 HLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIEL 1249 (1689)
Q Consensus 1198 ~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~l 1249 (1689)
.|+.++||+.+.... -+|.|+||||++|-|+..|...|+.+....++
T Consensus 1580 dl~~s~~i~v~dad~-----~l~~Ias~y~i~y~ti~~f~~~L~~~t~~kgl 1626 (1674)
T KOG0951|consen 1580 DLEESKCIEVDDEDD-----SLGMIASYYYISYITIERFSSSLSEKTKMKGL 1626 (1674)
T ss_pred HhhcCceEEeecccc-----ccchhhhhceeeeEeeehhhhhhhhhhhhhhh
Confidence 999999999876443 29999999999999999999999877666555
No 7
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-76 Score=775.23 Aligned_cols=641 Identities=25% Similarity=0.350 Sum_probs=507.2
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+||+.+.+.+. +|+ |+|+|.++++.+. +|+|++++||||||||++|.+++++.+.. +.++||++|
T Consensus 7 ~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~-~~~nvlv~apTGSGKTl~a~lail~~l~~-----------~~k~v~i~P 73 (674)
T PRK01172 7 GYDDEFLNLFTGNDFE-LYDHQRMAIEQLR-KGENVIVSVPTAAGKTLIAYSAIYETFLA-----------GLKSIYIVP 73 (674)
T ss_pred CCCHHHHHHHhhCCCC-CCHHHHHHHHHHh-cCCcEEEECCCCchHHHHHHHHHHHHHHh-----------CCcEEEEec
Confidence 47888888885 665 9999999999865 89999999999999999999999988753 248999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
||+||.|++..+.+-. ..+.++....+
T Consensus 74 ~raLa~q~~~~~~~l~--------------------------~~g~~v~~~~G--------------------------- 100 (674)
T PRK01172 74 LRSLAMEKYEELSRLR--------------------------SLGMRVKISIG--------------------------- 100 (674)
T ss_pred hHHHHHHHHHHHHHHh--------------------------hcCCeEEEEeC---------------------------
Confidence 9999999996663200 00011111100
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
+.......+ ...+|+|+| |+ +|+...+
T Consensus 101 --------------~~~~~~~~~-------------~~~dIiv~T--------pe-k~~~l~~----------------- 127 (674)
T PRK01172 101 --------------DYDDPPDFI-------------KRYDVVILT--------SE-KADSLIH----------------- 127 (674)
T ss_pred --------------CCCCChhhh-------------ccCCEEEEC--------HH-HHHHHHh-----------------
Confidence 000000001 167899999 99 8887765
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
.. +...
T Consensus 128 ---------------------------------------------------------~~--~~~l--------------- 133 (674)
T PRK01172 128 ---------------------------------------------------------HD--PYII--------------- 133 (674)
T ss_pred ---------------------------------------------------------CC--hhHH---------------
Confidence 10 1000
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT 863 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~ 863 (1689)
+.++++|+||+|++++ .+|+.++.+++++.. ..++.|+|++|||++|.+++++
T Consensus 134 ----------------------~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~----~~~~~riI~lSATl~n~~~la~ 187 (674)
T PRK01172 134 ----------------------NDVGLIVADEIHIIGDEDRGPTLETVLSSARY----VNPDARILALSATVSNANELAQ 187 (674)
T ss_pred ----------------------hhcCEEEEecchhccCCCccHHHHHHHHHHHh----cCcCCcEEEEeCccCCHHHHHH
Confidence 1189999999999987 799999999887643 3567999999999999999999
Q ss_pred HhhcCCCccEEEecCCCcccceEEEEEeechhhH--HHHHHHhhHHHHHHHHH-HhCCCeEEEEeCChHHHHHHHHHHHH
Q psy14582 864 LLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKA--LKRFQVMNDIVYEKVME-HAGRNQLLVFVHSRKETGKTARAIRD 940 (1689)
Q Consensus 864 ~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~--~~~~~~m~~~~~~~i~~-~~~~~~vLVFv~srk~~~~~a~~L~~ 940 (1689)
|+++. .|...+||+|++..+........ ..+...+ ....+.+ ...++++||||+||+.|+.+|..|..
T Consensus 188 wl~~~------~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~ 258 (674)
T PRK01172 188 WLNAS------LIKSNFRPVPLKLGILYRKRLILDGYERSQVD---INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQ 258 (674)
T ss_pred HhCCC------ccCCCCCCCCeEEEEEecCeeeeccccccccc---HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHH
Confidence 99865 25678899998865543211000 0000000 1122222 23468999999999999999999987
Q ss_pred hhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCC
Q psy14582 941 MCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVN 1020 (1689)
Q Consensus 941 ~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGID 1020 (1689)
.......... ........+..|++++++||++|||||++.+|..+++.|++|.++||
T Consensus 259 ~~~~~~~~~~------------~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VL----------- 315 (674)
T PRK01172 259 HFPEFNDFKV------------SSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVI----------- 315 (674)
T ss_pred hhhhcccccc------------cccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEE-----------
Confidence 5432211100 00112234567889999999999999999999999999999999999
Q ss_pred CCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1021 LPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1021 Ip~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
|||++++||||+|+++|||.++..|+... ..++|+.+|.||+|||||+|+|..|
T Consensus 316 ------------------------vaT~~la~Gvnipa~~VII~~~~~~~~~~--~~~~s~~~~~Qm~GRAGR~g~d~~g 369 (674)
T PRK01172 316 ------------------------VATPTLAAGVNLPARLVIVRDITRYGNGG--IRYLSNMEIKQMIGRAGRPGYDQYG 369 (674)
T ss_pred ------------------------EecchhhccCCCcceEEEEcCceEeCCCC--ceeCCHHHHHHHhhcCCCCCCCCcc
Confidence 99999999999999999999999998653 3568999999999999999999999
Q ss_pred EEEEEecCCc-HHHHHHHh-hCcCCcccccccccccchh--hhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcc
Q psy14582 1101 EGVLITNHSE-LQYYLSLL-NHQLPVESQMISKLPDMLN--AEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHD 1176 (1689)
Q Consensus 1101 ~~iil~~~~~-~~~y~~ll-~~~~pieS~l~~~l~d~ln--aeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~ 1176 (1689)
.+++++...+ .++|.+++ +++.|+||+|.....+++| ++|+.|++.+.+|+++|++|||+|++ |+
T Consensus 370 ~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~---~~-------- 438 (674)
T PRK01172 370 IGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQ---NG-------- 438 (674)
T ss_pred eEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhc---Cc--------
Confidence 9999987755 67888888 7899999999877666555 99999999999999999999999973 21
Q ss_pred cccCChhhhhhhHHHHHHHHHHHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcC
Q psy14582 1177 ALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLS 1256 (1689)
Q Consensus 1177 ~~~~d~~l~~~~~~lv~~al~~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s 1256 (1689)
.++++++|++|++.|.++|||+.+ +.+.+|++|+++|+||++|.|+..|.+.++..++..++|.++|.+
T Consensus 439 --------~~~l~~~v~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~ 507 (674)
T PRK01172 439 --------VDEIDYYIESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLC 507 (674)
T ss_pred --------hHHHHHHHHHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcC
Confidence 135678999999999999999843 469999999999999999999999999999999999999999999
Q ss_pred cccccCcCChHHHHHHHHHHhhCCCCCCCCCCChhHHHHHHHHHHHhccCCCC----chh-hhhHHHHHHHHHHHHHHHH
Q psy14582 1257 GEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKVNILLQAYISQLKLEG----FAL-MSDMVFVTQSAARLMRAIF 1331 (1689)
Q Consensus 1257 ~Ef~~i~vR~~E~~~l~~l~~~~p~~~~~~~~~~~~K~~~Llqa~is~~~l~~----~~l-~~d~~~i~~~a~rl~~a~~ 1331 (1689)
+|| +|+|.+|...+.++.+++|. .+...|+.|+++|||+||||.+++. |.. .+|+..++++++|+.+|+.
T Consensus 508 ~e~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~~a~~ 582 (674)
T PRK01172 508 REI--IPANTRDDYYAMEFLEDIGV---IDGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWISYSLA 582 (674)
T ss_pred ccc--cccccchHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 999 89999998888889888765 2345689999999999999999653 222 2688889999999999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhcCC-CchhhccCChhhhhhhhcCCh-hhHHH
Q psy14582 1332 EIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNF-PWERLYDLGPNEIGELIRVPK-LGKTI 1409 (1689)
Q Consensus 1332 ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~~~i~~~~i~~~~~~~~-~~~~l~dl~~~el~~ll~~~~-~g~~i 1409 (1689)
.++.. +|..++..+-.|.++|.+++|++.+||.|+|||+++.+++|.+.|+ ++.++.+++++++.+++++.+ ..+.|
T Consensus 583 ~~~~~-~~~~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~~~~~i 661 (674)
T PRK01172 583 RLSSI-YKPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDTLANAI 661 (674)
T ss_pred HHHHH-hhHHHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHHHHHHH
Confidence 88865 5566667777778889999999999999999999999999999999 899999999999999987643 34444
Q ss_pred HHH
Q psy14582 1410 HKY 1412 (1689)
Q Consensus 1410 ~~~ 1412 (1689)
.+.
T Consensus 662 ~~~ 664 (674)
T PRK01172 662 VNR 664 (674)
T ss_pred HHH
Confidence 433
No 8
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=100.00 E-value=2.4e-52 Score=499.97 Aligned_cols=304 Identities=46% Similarity=0.823 Sum_probs=287.6
Q ss_pred eeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCChHHHHHHHHHHhhCCCCCC-CCCCChhH
Q psy14582 1214 MQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIK-ESTDEPSA 1292 (1689)
Q Consensus 1214 ~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~~E~~~l~~l~~~~p~~~~-~~~~~~~~ 1292 (1689)
+.+|++|++||+|||+|.||+.|++.+++.++..++|+++|.|.||+++++|++|..+|.+|.+.+|++++ +..+.|+.
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 81 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKLPIRLENPSLDDPHV 81 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhCCcCcCCCCCCCchH
Confidence 67999999999999999999999999999999999999999999999999999999999999999998876 56789999
Q ss_pred HHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCCCCCH
Q psy14582 1293 KVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPE 1372 (1689)
Q Consensus 1293 K~~~Llqa~is~~~l~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~~~i~~ 1372 (1689)
|+++||||||+|+.++.++|.+|+.+|+++|.||++|++||+..+||+..+..+++|+|||+||+|++++||+|||++++
T Consensus 82 K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp~i~~ 161 (312)
T smart00611 82 KANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPE 161 (312)
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-CchhhccCChhhhhhhhcCC-hhhHHHHHHHHhCCcceEEEEeeccccceEEEEEeecCCCccCcccc
Q psy14582 1373 EIIKKIEKKNF-PWERLYDLGPNEIGELIRVP-KLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLH 1450 (1689)
Q Consensus 1373 ~~i~~~~~~~~-~~~~l~dl~~~el~~ll~~~-~~g~~i~~~~~~~P~l~l~~~~~pi~~~~~~~~~~i~~~~~~~~~~~ 1450 (1689)
+.+++|+++++ +++++.++++++++.+++++ +.|+.+++++++||++++++.++|+++.+.++.++|+++|.|+..+|
T Consensus 162 ~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 241 (312)
T smart00611 162 EILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDEIH 241 (312)
T ss_pred HHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEccccc
Confidence 99999999886 99999999999999999987 78999999999999999999999999988999999999999875432
Q ss_pred cccceEEEEEeccchhhHHHHhhhhhhhccCCCchhHHHHHHHHHHhhhhccCCCcccccCCCCCHHHHHhhhccCCCCH
Q psy14582 1451 GGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETV 1530 (1689)
Q Consensus 1451 ~~~e~~wi~v~d~~~~~~rll~a~vdi~s~~gwL~~~l~~m~l~QmivQa~w~~~s~LlQlPh~~~~~~~~~~~~~v~~v 1530 (1689)
T Consensus 242 -------------------------------------------------------------------------------- 241 (312)
T smart00611 242 -------------------------------------------------------------------------------- 241 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCHHHHHHhhcCCHHHHHHHHHHHhcCCcEEEEEEEeccccccCCCeEEEEEEEEecCCCCCccccCCCCCCCcc
Q psy14582 1531 FDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREE 1610 (1689)
Q Consensus 1531 ~dl~~~~~~~r~~ll~l~~~q~~~v~~~~~~~P~iei~~~v~~~~~i~~g~~~~l~v~l~R~~~~~~~v~aP~fP~~K~e 1610 (1689)
.|.|
T Consensus 242 ----------------------------------------------------------------------------~k~e 245 (312)
T smart00611 242 ----------------------------------------------------------------------------GKQE 245 (312)
T ss_pred ----------------------------------------------------------------------------CCcc
Confidence 6789
Q ss_pred cEEEEEEeCCCCeEEEEEeeccCcce---EEEEEeeCCC-CceEEEEEEEEcCCCCCCCceEEEEEE
Q psy14582 1611 GWWVVIGDPKTNSLLSIKRLTLQQKA---KIKLDFVAPN-PGHHSYALYFMSDAYLGCDQEYKFSID 1673 (1689)
Q Consensus 1611 ~Wwvvvgd~~~~~l~~ikrv~~~~~~---~~~l~f~~p~-~G~~~~~l~~~sDsY~G~D~e~~~~l~ 1673 (1689)
+||++|||.++|+|+.++|+++.+.. +++++|.+|. +|.|+|++++|||||+|||++++++++
T Consensus 246 ~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~~~~~~~v~v~SD~y~g~d~~~~i~~~ 312 (312)
T smart00611 246 GWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGNYQYTLRLVSDSYLGCDQEYPLSFD 312 (312)
T ss_pred cEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCCCcceEEEEEEecccCCcceEEEEeeC
Confidence 99999999999999999999986654 7899998875 799999999999999999999999863
No 9
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=100.00 E-value=2e-50 Score=484.02 Aligned_cols=302 Identities=39% Similarity=0.720 Sum_probs=243.4
Q ss_pred eccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCChHHHHHHHHHHhhCCCCC-CCCCCChhHHH
Q psy14582 1216 VTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPI-KESTDEPSAKV 1294 (1689)
Q Consensus 1216 ~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~~E~~~l~~l~~~~p~~~-~~~~~~~~~K~ 1294 (1689)
||++|+|||+|||+++||..|...+++.++..++|+++|.|.||+++++|++|+.+|.+|.+.+|+|+ ++.+++|+.|+
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~ 80 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKKIPYPIKKEKINDPHIKA 80 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHhcccCccccccccHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999998 78899999999
Q ss_pred HHHHHHHHhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHH
Q psy14582 1295 NILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEI 1374 (1689)
Q Consensus 1295 ~~Llqa~is~~~l~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~~~i~~~~ 1374 (1689)
++||||||+|++++.++|..|+.+|+++|.||++|++|||..+||+..+..+|+|+|||+||+|++.+||+|||+++++.
T Consensus 81 ~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~ 160 (314)
T PF02889_consen 81 FVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLPHIGEES 160 (314)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGSTT--HHH
T ss_pred HHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-CchhhccCChhhhhhhhc-CChhhHHHHHHHHhCCcceEEEEeeccccce---EEEEEeecCCCccCccc
Q psy14582 1375 IKKIEKKNF-PWERLYDLGPNEIGELIR-VPKLGKTIHKYVHQFPKLELATHIQPITRST---LRVELTISPDFQWDEKL 1449 (1689)
Q Consensus 1375 i~~~~~~~~-~~~~l~dl~~~el~~ll~-~~~~g~~i~~~~~~~P~l~l~~~~~pi~~~~---~~~~~~i~~~~~~~~~~ 1449 (1689)
+++|+++++ +++++.++++++++.+++ ++..|+.+.+++++||+++++++++|++.+. +.|.|++++.|.|+.
T Consensus 161 ~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~~~~~v~v~i~~~~~~~~-- 238 (314)
T PF02889_consen 161 LKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIVPILTVQVSITRKFSWSD-- 238 (314)
T ss_dssp HHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEECSEEEEEEEEEESSS-SS--
T ss_pred HHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccCCcEEEEEEEEccccccc--
Confidence 999999995 999999999999999996 7789999999999999999999999998877 999999999998874
Q ss_pred ccccceEEEEEeccchhhHHHHhhhhhhhccCCCchhHHHHHHHHHHhhhhccCCCcccccCCCCCHHHHHhhhccCCCC
Q psy14582 1450 HGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVET 1529 (1689)
Q Consensus 1450 ~~~~e~~wi~v~d~~~~~~rll~a~vdi~s~~gwL~~~l~~m~l~QmivQa~w~~~s~LlQlPh~~~~~~~~~~~~~v~~ 1529 (1689)
T Consensus 239 -------------------------------------------------------------------------------- 238 (314)
T PF02889_consen 239 -------------------------------------------------------------------------------- 238 (314)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCHHHHHHhhcCCHHHHHHHHHHHhcCCcEEEEEEEeccccccCCCeEEEEEEEEecCCCCCccccCCCCCCCc
Q psy14582 1530 VFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKRE 1609 (1689)
Q Consensus 1530 v~dl~~~~~~~r~~ll~l~~~q~~~v~~~~~~~P~iei~~~v~~~~~i~~g~~~~l~v~l~R~~~~~~~v~aP~fP~~K~ 1609 (1689)
+||+.|.
T Consensus 239 -------------------------------------------------------------------------~~~~~k~ 245 (314)
T PF02889_consen 239 -------------------------------------------------------------------------RFPKKKK 245 (314)
T ss_dssp -------------------------------------------------------------------------T-SS--B
T ss_pred -------------------------------------------------------------------------CCCCCCc
Confidence 8999999
Q ss_pred ccEEEEEEeCCCCeEEEEEeecc-Cc--ceEEEEEeeCCCC-ce--EEEEEEEEcCCCCCCCceEEEEE
Q psy14582 1610 EGWWVVIGDPKTNSLLSIKRLTL-QQ--KAKIKLDFVAPNP-GH--HSYALYFMSDAYLGCDQEYKFSI 1672 (1689)
Q Consensus 1610 e~Wwvvvgd~~~~~l~~ikrv~~-~~--~~~~~l~f~~p~~-G~--~~~~l~~~sDsY~G~D~e~~~~l 1672 (1689)
|+||++|||.++|+|+.++|+++ .+ ..+.+++|.+|.+ |. ++|+++++||+|+|+|++++|++
T Consensus 246 ~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d~~~~i~~ 314 (314)
T PF02889_consen 246 ESWWLFVGDSKNNELLHFERITISKKKSKDTVKISFQVPIPVGPRPYQYTVYVISDSYLGLDQEVPINF 314 (314)
T ss_dssp --EEEEEEECCCTEEEEEEEE---SS--EEEEEEEEE--SS-EE--EEEEEEEEESS-SS--EEEEEEE
T ss_pred ccEEEEEEECCCCeEEEEeeeehhhhccCCcEEEEEEecCCCCCCCceEEEEEEECCccccceEEEeeC
Confidence 99999999999999999999999 44 5789999999865 77 99999999999999999999875
No 10
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.2e-44 Score=422.47 Aligned_cols=563 Identities=25% Similarity=0.342 Sum_probs=384.1
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.+|+.++..++ |++++.|+|..++..-|-.|+|++|..+|+||||++..++=+..+.. .+.|.+|++|
T Consensus 200 dipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----------~g~KmlfLvP 269 (830)
T COG1202 200 DIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----------GGKKMLFLVP 269 (830)
T ss_pred CCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----------CCCeEEEEeh
Confidence 56899999997 99999999999999877789999999999999999999998887764 3569999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
..+||+|.++.|..+--|+-+- ..+| +|. --+....
T Consensus 270 LVALANQKy~dF~~rYs~Lglk---------------------vair-VG~----------------------srIk~~~ 305 (830)
T COG1202 270 LVALANQKYEDFKERYSKLGLK---------------------VAIR-VGM----------------------SRIKTRE 305 (830)
T ss_pred hHHhhcchHHHHHHHhhcccce---------------------EEEE-ech----------------------hhhcccC
Confidence 9999999998886543111000 0000 000 0001111
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
+|+. ......++|||+| -+ -.|...|
T Consensus 306 ~pv~----------------------------~~t~~dADIIVGT--------YE-GiD~lLR----------------- 331 (830)
T COG1202 306 EPVV----------------------------VDTSPDADIIVGT--------YE-GIDYLLR----------------- 331 (830)
T ss_pred Cccc----------------------------cCCCCCCcEEEee--------ch-hHHHHHH-----------------
Confidence 1100 0112267899999 65 3444433
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
|| |-+ +.
T Consensus 332 ---------------------------------------------------------tg--~~l----------gd---- 338 (830)
T COG1202 332 ---------------------------------------------------------TG--KDL----------GD---- 338 (830)
T ss_pred ---------------------------------------------------------cC--Ccc----------cc----
Confidence 32 111 11
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT 863 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~ 863 (1689)
++.+||||+|+|.| +||+-++-++.|+++ +.+..|+|+||||+.|.+++|.
T Consensus 339 ------------------------iGtVVIDEiHtL~deERG~RLdGLI~RLr~----l~~~AQ~i~LSATVgNp~elA~ 390 (830)
T COG1202 339 ------------------------IGTVVIDEIHTLEDEERGPRLDGLIGRLRY----LFPGAQFIYLSATVGNPEELAK 390 (830)
T ss_pred ------------------------cceEEeeeeeeccchhcccchhhHHHHHHH----hCCCCeEEEEEeecCChHHHHH
Confidence 89999999999999 899999999999865 4668999999999999999999
Q ss_pred HhhcCCCccEEEecCCCcccceEEEEEeec-hhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhh
Q psy14582 864 LLRIKPETGLFYFDNSFRPVALEQQYIGVT-EKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMC 942 (1689)
Q Consensus 864 ~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~-~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~ 942 (1689)
.|+.+. ..+ +-|||||+.|++... ...+......+.+.-|.......-.+|+|||++||+.|..+|..|...+
T Consensus 391 ~l~a~l----V~y--~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG 464 (830)
T COG1202 391 KLGAKL----VLY--DERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKG 464 (830)
T ss_pred HhCCee----Eee--cCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCC
Confidence 999873 333 459999999888776 3334343444444333332222235899999999999999999998654
Q ss_pred hhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCC
Q psy14582 943 LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 943 ~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp 1022 (1689)
... +.|||||+..+|..||..|.++.+.++
T Consensus 465 ~~a-------------------------------------~pYHaGL~y~eRk~vE~~F~~q~l~~V------------- 494 (830)
T COG1202 465 LKA-------------------------------------APYHAGLPYKERKSVERAFAAQELAAV------------- 494 (830)
T ss_pred ccc-------------------------------------ccccCCCcHHHHHHHHHHHhcCCcceE-------------
Confidence 433 345999999999999999999999999
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
|+|+.|+.|||+||..||+..--.- ..-+|+.+|.||.||||||+|...|++
T Consensus 495 ----------------------VTTAAL~AGVDFPASQVIFEsLaMG------~~WLs~~EF~QM~GRAGRp~yHdrGkV 546 (830)
T COG1202 495 ----------------------VTTAALAAGVDFPASQVIFESLAMG------IEWLSVREFQQMLGRAGRPDYHDRGKV 546 (830)
T ss_pred ----------------------eehhhhhcCCCCchHHHHHHHHHcc------cccCCHHHHHHHhcccCCCCcccCceE
Confidence 6666666666677666664322110 123789999999999999999999999
Q ss_pred EEEecCCc----------HHHHHHHhh-CcCCccccccccc-ccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcc
Q psy14582 1103 VLITNHSE----------LQYYLSLLN-HQLPVESQMISKL-PDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNL 1170 (1689)
Q Consensus 1103 iil~~~~~----------~~~y~~ll~-~~~pieS~l~~~l-~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~ 1170 (1689)
++++.... .+...++|+ .+.|+.-...... .+.+.| ..|...+.++. + |+ |+..
T Consensus 547 yllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i-~---------~v--~~~~ 612 (830)
T COG1202 547 YLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVI-E---------RV--NSLM 612 (830)
T ss_pred EEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHH-h---------hc--Chhh
Confidence 99986543 233445555 4566554443221 123333 22333332221 1 11 2222
Q ss_pred cCCCcccccCChhhhhhhHHHHHHHHHHHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHH
Q psy14582 1171 YGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELF 1250 (1689)
Q Consensus 1171 Yg~~~~~~~~d~~l~~~~~~lv~~al~~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll 1250 (1689)
.|-.. | .+.++..|++.|||+.+ .+.+.+|+.|+++|.+++.|.++..+...+-..+ +.|
T Consensus 613 ~g~~~-----~----------~~k~l~~Lee~g~i~~~--G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v~~~~---~pl 672 (830)
T COG1202 613 LGAAF-----D----------PKKALSKLEEYGMIKKK--GNIVRPTPYGRAVAMSFLGPSEAEFIREGVLASM---DPL 672 (830)
T ss_pred ccccC-----C----------HHHHHHHHHhcCCeecc--CCEeeeccccceeEEeecCchHHHHHHHhhhccC---ChH
Confidence 22111 1 35678899999999954 3569999999999999999999999988854433 345
Q ss_pred HHHhcCcccccCcCChHHHHHHHHHHh-hCCCCCCC-----------CCC--Chh--HHHHHHHHHHHhc----------
Q psy14582 1251 RVFSLSGEFRHITVREEEKLELQKLME-RAPIPIKE-----------STD--EPS--AKVNILLQAYISQ---------- 1304 (1689)
Q Consensus 1251 ~i~s~s~Ef~~i~vR~~E~~~l~~l~~-~~p~~~~~-----------~~~--~~~--~K~~~Llqa~is~---------- 1304 (1689)
+++..-.=|++..+...=+..+.+... ++|-.+.. ++- +|. .|...+.|.+++.
T Consensus 673 ~i~~~l~pfE~ayls~~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i~~df~~c~c~d~ce~~~ 752 (830)
T COG1202 673 RIAAELEPFENAYLSGFLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLIYMDFLNCTCRDCCECAE 752 (830)
T ss_pred hHhhccccccccccChHHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHhcCchhhhHHHHH
Confidence 666666667776666554444444332 34432211 011 332 3445555555542
Q ss_pred ---------cCCCC-------------chh---hhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc
Q psy14582 1305 ---------LKLEG-------------FAL---MSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRR 1356 (1689)
Q Consensus 1305 ---------~~l~~-------------~~l---~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~ 1356 (1689)
+.++| |.+ .+|..+-++++.|++.|+=.|+...+-...+..|..|.+-|+.+
T Consensus 753 ~~lse~ii~lR~~gk~p~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ea~~lk~~ie~~ 829 (830)
T COG1202 753 QRLSEKIIELRIEGKDPSQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEAEAKALKKKIEEG 829 (830)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhcC
Confidence 11222 333 37999999999999999999998888888888888888777643
No 11
>KOG0330|consensus
Probab=100.00 E-value=2.8e-42 Score=389.57 Aligned_cols=343 Identities=22% Similarity=0.304 Sum_probs=261.9
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
++.+.+.++.+ ||+.||+||++++|.++ .|+|+|+.|.||||||.+|+|||++.|...+ ..+++++++|
T Consensus 67 gv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L-~g~dvIglAeTGSGKT~afaLPIl~~LL~~p--------~~~~~lVLtP 137 (476)
T KOG0330|consen 67 GVHPELLEACQELGWKKPTKIQSEAIPVAL-GGRDVIGLAETGSGKTGAFALPILQRLLQEP--------KLFFALVLTP 137 (476)
T ss_pred CcCHHHHHHHHHhCcCCCchhhhhhcchhh-CCCcEEEEeccCCCchhhhHHHHHHHHHcCC--------CCceEEEecC
Confidence 34677777775 99999999999999999 8999999999999999999999999999742 4489999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
|||||.||.+.|..-- ..-+.++..
T Consensus 138 tRELA~QI~e~fe~Lg-------------------------~~iglr~~~------------------------------ 162 (476)
T KOG0330|consen 138 TRELAQQIAEQFEALG-------------------------SGIGLRVAV------------------------------ 162 (476)
T ss_pred cHHHHHHHHHHHHHhc-------------------------cccCeEEEE------------------------------
Confidence 9999999987663310 000011111
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
++| ..++.....+ ...+++|+|+| |+..||....
T Consensus 163 --------lvG-G~~m~~q~~~------------L~kkPhilVaT--------PGrL~dhl~~----------------- 196 (476)
T KOG0330|consen 163 --------LVG-GMDMMLQANQ------------LSKKPHILVAT--------PGRLWDHLEN----------------- 196 (476)
T ss_pred --------Eec-CchHHHHHHH------------hhcCCCEEEeC--------cHHHHHHHHh-----------------
Confidence 111 1122111111 12389999999 9988887653
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
|++ |-
T Consensus 197 ---------------------------------------------------------Tkg-----f~------------- 201 (476)
T KOG0330|consen 197 ---------------------------------------------------------TKG-----FS------------- 201 (476)
T ss_pred ---------------------------------------------------------ccC-----cc-------------
Confidence 111 00
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT 863 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~ 863 (1689)
.+.++.+|+||++.+.| +++..++.|+.+ .+...|.+++|||++ +.+.+
T Consensus 202 ---------------------le~lk~LVlDEADrlLd~dF~~~ld~ILk~-------ip~erqt~LfsATMt--~kv~k 251 (476)
T KOG0330|consen 202 ---------------------LEQLKFLVLDEADRLLDMDFEEELDYILKV-------IPRERQTFLFSATMT--KKVRK 251 (476)
T ss_pred ---------------------HHHhHHHhhchHHhhhhhhhHHHHHHHHHh-------cCccceEEEEEeecc--hhhHH
Confidence 01188999999999988 888888887654 467899999999999 44444
Q ss_pred HhhcCCCccE-EEecCCCcccc-eEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHh
Q psy14582 864 LLRIKPETGL-FYFDNSFRPVA-LEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDM 941 (1689)
Q Consensus 864 ~L~~~~~~~~-~~f~~~~Rpvp-L~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~ 941 (1689)
...+...... ....+.|+.++ +.|+|..++.+.+...+ -.+++...++++||||++...+..++-.|...
T Consensus 252 L~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yL--------V~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l 323 (476)
T KOG0330|consen 252 LQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYL--------VYLLNELAGNSVIVFCNTCNTTRFLALLLRNL 323 (476)
T ss_pred HHhhccCCCeEEeccchhcchHHhhhheEeccccccchhH--------HHHHHhhcCCcEEEEEeccchHHHHHHHHHhc
Confidence 4454443332 23344566665 77888877765543321 13445566799999999999999999999987
Q ss_pred hhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCC
Q psy14582 942 CLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNL 1021 (1689)
Q Consensus 942 ~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDI 1021 (1689)
+..+-.+ ||.|++..|.-.++.|++|...||||||+++||+||
T Consensus 324 g~~a~~L-------------------------------------hGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDi 366 (476)
T KOG0330|consen 324 GFQAIPL-------------------------------------HGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDI 366 (476)
T ss_pred Ccceecc-------------------------------------cchhhHHHHHHHHHHHhccCCcEEEecchhcccCCC
Confidence 7665544 999999999999999999999999999999999999
Q ss_pred CCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1022 PAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1022 p~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
|.|++| +++|+|.| ..||+||+||+||+| .+|.
T Consensus 367 p~Vd~V------------------------VNyDiP~~---------------------skDYIHRvGRtaRaG--rsG~ 399 (476)
T KOG0330|consen 367 PHVDVV------------------------VNYDIPTH---------------------SKDYIHRVGRTARAG--RSGK 399 (476)
T ss_pred CCceEE------------------------EecCCCCc---------------------HHHHHHHcccccccC--CCcc
Confidence 999999 68888877 789999999999999 8999
Q ss_pred EEEEecCCcHHHHHH
Q psy14582 1102 GVLITNHSELQYYLS 1116 (1689)
Q Consensus 1102 ~iil~~~~~~~~y~~ 1116 (1689)
+|.++++-+.+.|.+
T Consensus 400 ~ItlVtqyDve~~qr 414 (476)
T KOG0330|consen 400 AITLVTQYDVELVQR 414 (476)
T ss_pred eEEEEehhhhHHHHH
Confidence 999999988888776
No 12
>KOG4434|consensus
Probab=100.00 E-value=1.1e-40 Score=369.58 Aligned_cols=305 Identities=29% Similarity=0.510 Sum_probs=250.7
Q ss_pred CCCCHHHHHHHHhcCcccc-----cCcCChHHHHHHHHHHhhCCCC---CCCC-CC-ChhHHHHHHHHHHHhccCCCCch
Q psy14582 1242 PTLSEIELFRVFSLSGEFR-----HITVREEEKLELQKLMERAPIP---IKES-TD-EPSAKVNILLQAYISQLKLEGFA 1311 (1689)
Q Consensus 1242 ~~~~~~~ll~i~s~s~Ef~-----~i~vR~~E~~~l~~l~~~~p~~---~~~~-~~-~~~~K~~~Llqa~is~~~l~~~~ 1311 (1689)
|+|...-++-+++.|.||. ++.-|+.+..+.-+|+..++-- -++. .. .-+.|+.+||.||+||++|+.=.
T Consensus 9 p~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~dt 88 (520)
T KOG4434|consen 9 PRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLESDT 88 (520)
T ss_pred chhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCChhh
Confidence 4555567888999999995 5888988888999998887632 2221 22 23789999999999999999878
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhcCCCchhhccC
Q psy14582 1312 LMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDL 1391 (1689)
Q Consensus 1312 l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~~~i~~~~i~~~~~~~~~~~~l~dl 1391 (1689)
|.-|..||+..+.||+.-|+.++... |
T Consensus 89 LEeDqqfiikkcp~lvqEMVnc~~qL---------------i-------------------------------------- 115 (520)
T KOG4434|consen 89 LEEDQQFIIKKCPRLVQEMVNCSQQL---------------I-------------------------------------- 115 (520)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHH---------------H--------------------------------------
Confidence 99999999999999999888553211 0
Q ss_pred ChhhhhhhhcCChhhHHHHHHHHhCCcceEEEEeeccccceEEEEEeecCCCccCcccccccceEEEEEeccchhhHHHH
Q psy14582 1392 GPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLI 1471 (1689)
Q Consensus 1392 ~~~el~~ll~~~~~g~~i~~~~~~~P~l~l~~~~~pi~~~~~~~~~~i~~~~~~~~~~~~~~e~~wi~v~d~~~~~~rll 1471 (1689)
+..+.++-|++ |
T Consensus 116 -----------------~May~r~~~r~---------------------p------------------------------ 127 (520)
T KOG4434|consen 116 -----------------VMAYSRHTRRI---------------------P------------------------------ 127 (520)
T ss_pred -----------------HHHHhhccccC---------------------c------------------------------
Confidence 01111111111 0
Q ss_pred hhhhhhhccCCCchhHHHHHHHHHHhhhhccCCCcccccCCCCCHHHHHhhhc-cCCCCHHHHhcCCHHHHHHhhc-CCH
Q psy14582 1472 QACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTE-KGVETVFDIMELEDDDRLRLLQ-LSE 1549 (1689)
Q Consensus 1472 ~a~vdi~s~~gwL~~~l~~m~l~QmivQa~w~~~s~LlQlPh~~~~~~~~~~~-~~v~~v~dl~~~~~~~r~~ll~-l~~ 1549 (1689)
-+.+.-+||.|++|+|||+|...|||+||||++++.+.++.+ .+|++++||..|..++|+.||. |++
T Consensus 128 -----------siet~eNcmKlspM~vQgLwqfkSPLLQLPHitednL~~~~KKr~vks~qdla~lk~e~rr~lL~~Lsd 196 (520)
T KOG4434|consen 128 -----------SIETFENCMKLSPMFVQGLWQFKSPLLQLPHITEDNLQHLRKKRKVKSCQDLAVLKAETRRSLLRSLSD 196 (520)
T ss_pred -----------cHHHHHHHHhccHHHHHHHHHhcChhhcCCccchHHHHHHhhhcccccHHHHhhcCHHHHHHHHHhcch
Confidence 012467999999999999999999999999999999999865 4699999999999999999997 999
Q ss_pred HHHHHHHHHHhcCCcEEEE--EEEecc---ccccCCCeEEEEEEEEec---C----------------------------
Q psy14582 1550 SQLADVARFCNRYPNIELS--YEVLNK---DRISSGSSVNVVVNLDRE---D---------------------------- 1593 (1689)
Q Consensus 1550 ~q~~~v~~~~~~~P~iei~--~~v~~~---~~i~~g~~~~l~v~l~R~---~---------------------------- 1593 (1689)
.++++|+.|+..+|.|.++ ..|.|+ +.||+|++||++|+|+|. +
T Consensus 197 eeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~~l~d~~e~~~~d~~k~paedG~~de~n~ea~g 276 (520)
T KOG4434|consen 197 EEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRSRLIDPQEAGLADQYKKPAEDGGDDENNLEASG 276 (520)
T ss_pred HHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEEEeccccChHhhhhhhhhhCchhhCCCcccchhccC
Confidence 9999999999999988764 456554 579999999999999872 0
Q ss_pred -----------------------------------------------------------------C--------------
Q psy14582 1594 -----------------------------------------------------------------E-------------- 1594 (1689)
Q Consensus 1594 -----------------------------------------------------------------~-------------- 1594 (1689)
+
T Consensus 277 ~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~at~ka~eeea~~~~sD~E~e~~n~Ds~dees~ 356 (520)
T KOG4434|consen 277 APEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASPATEKALEEEAKDKGSDSEEEETNRDSQDEESD 356 (520)
T ss_pred ChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCChhhhhhhHHHhhhcCcchhhhhhcccccccccc
Confidence 0
Q ss_pred ----------------------------------------CCCccccCCCCCCCcccEEEEEEeCCCCeEEEE--Eeecc
Q psy14582 1595 ----------------------------------------VTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSI--KRLTL 1632 (1689)
Q Consensus 1595 ----------------------------------------~~~~v~aP~fP~~K~e~Wwvvvgd~~~~~l~~i--krv~~ 1632 (1689)
..++|||||||.+|.|+||++|+|.|+.+|+.. ...++
T Consensus 357 asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~pyFPeEKqEwWW~Yi~drKsrtLlt~PyhV~tL 436 (520)
T KOG4434|consen 357 ASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSPYFPEEKQEWWWLYIADRKSRTLLTMPYHVCTL 436 (520)
T ss_pred cCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccCCCcchhhheeeeeeecccccceecchhhhhcc
Confidence 135799999999999999999999999999964 35679
Q ss_pred CcceEEEEEeeCC-CCceEEEEEEEEcCCCCCCCceEEEEEEeecCC
Q psy14582 1633 QQKAKIKLDFVAP-NPGHHSYALYFMSDAYLGCDQEYKFSIDVSEYY 1678 (1689)
Q Consensus 1633 ~~~~~~~l~f~~p-~~G~~~~~l~~~sDsY~G~D~e~~~~l~V~~~~ 1678 (1689)
.+..++.|.|++| .||.|+|+|+|.||||+|+||..+++++|.++.
T Consensus 437 ~d~eei~lkF~AP~~pG~Ytytv~lrSDSYmg~dq~~~lKldV~eAk 483 (520)
T KOG4434|consen 437 KDTEEIELKFPAPGKPGNYTYTVFLRSDSYMGLDQIKPLKLDVHEAK 483 (520)
T ss_pred cccceeEEeccCCCCCCceEEEEEEecccccChhhccceeeeeccCC
Confidence 9999999999887 699999999999999999999999999998774
No 13
>KOG0950|consensus
Probab=100.00 E-value=1.1e-39 Score=403.99 Aligned_cols=530 Identities=24% Similarity=0.309 Sum_probs=341.7
Q ss_pred hhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
+++||+||.|+++| .||..+|.++++.++... ...+|+||+|||+||..+++.||.+ +.+...|||+||..
T Consensus 342 ~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~--~~~~~iIGMSATi~N~~lL~~~L~A------~~y~t~fRPv~L~E 413 (1008)
T KOG0950|consen 342 LGMVVVDELHMIGDKGRGAILELLLAKILYENL--ETSVQIIGMSATIPNNSLLQDWLDA------FVYTTRFRPVPLKE 413 (1008)
T ss_pred cCcEEEeeeeeeeccccchHHHHHHHHHHHhcc--ccceeEeeeecccCChHHHHHHhhh------hheecccCcccchh
Confidence 89999999999999 899999999999876543 3348999999999999999999985 35678899999976
Q ss_pred EEEeechhhHHHHHHHhhH-------------------HHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhcccc
Q psy14582 888 QYIGVTEKKALKRFQVMND-------------------IVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTL 948 (1689)
Q Consensus 888 ~~~~~~~~~~~~~~~~m~~-------------------~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l 948 (1689)
.+..-.......+...+.+ .|.+.+ ..+.++|||||+|+.|+.+|..+.........-
T Consensus 414 ~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~---~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~ 490 (1008)
T KOG0950|consen 414 YIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETA---PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKS 490 (1008)
T ss_pred ccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhh---hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhh
Confidence 5432111111101111111 122221 124679999999999999997776544322111
Q ss_pred chhhh-cCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCccee
Q psy14582 949 GQFLR-EGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVV 1027 (1689)
Q Consensus 949 ~~fl~-~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V 1027 (1689)
..++. ..-.+...........-+.-|+..+++|++|||+|++..+|+.|+..|++|.+.|+
T Consensus 491 e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl------------------ 552 (1008)
T KOG0950|consen 491 EKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVL------------------ 552 (1008)
T ss_pred hhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEE------------------
Confidence 11111 00001111112222334566899999999999999999999999999999999999
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEec
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITN 1107 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~ 1107 (1689)
+||+|||||||+||.+|||+-..+-- ..++...|.||+|||||.|.|+.|.+|+++.
T Consensus 553 -----------------~aTSTlaaGVNLPArRVIiraP~~g~------~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k 609 (1008)
T KOG0950|consen 553 -----------------VATSTLAAGVNLPARRVIIRAPYVGR------EFLTRLEYKQMVGRAGRTGIDTLGDSILIIK 609 (1008)
T ss_pred -----------------EecchhhccCcCCcceeEEeCCcccc------chhhhhhHHhhhhhhhhcccccCcceEEEee
Confidence 99999999999999999998543221 2367889999999999999999999999999
Q ss_pred CCcHHHHHHHhhCcC-Ccccccccccc----cchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCCh
Q psy14582 1108 HSELQYYLSLLNHQL-PVESQMISKLP----DMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDP 1182 (1689)
Q Consensus 1108 ~~~~~~y~~ll~~~~-pieS~l~~~l~----d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d~ 1182 (1689)
..++..+..+++.++ |+.|.+..... ..+..-|+.|...|.+|...+..+|+++... -|..-....+... +.
T Consensus 610 ~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di~~~va~tl~s~q~--~~~~~~~~le~~s-~q 686 (1008)
T KOG0950|consen 610 SSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDILHFVAVTLLSAQE--KPENVREQLEMES-DQ 686 (1008)
T ss_pred ccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHHHHHHHHhhhhccc--chhhhhhcccchh-hh
Confidence 999988889999876 46787744321 2334456677778999999999999998653 2222111111100 00
Q ss_pred hhhhhhHHHHHHHH-HHHHHcCCce-eccCCCceeeccccccceecccchhhHHHHHHhhCCCCC---HHHHHHHHhcCc
Q psy14582 1183 LLECHRADLIHTAA-LHLERSGLIK-YDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLS---EIELFRVFSLSG 1257 (1689)
Q Consensus 1183 ~l~~~~~~lv~~al-~~L~~~~~i~-~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~---~~~ll~i~s~s~ 1257 (1689)
. .+..+. .++....+|. ...+....-+|+||+.+=.-.+++.-...+-.-|+..+. ....++++-.-.
T Consensus 687 l-------~~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~~~~a~~l~~~L~~~~~~~vle~~lh~lylvt 759 (1008)
T KOG0950|consen 687 L-------VINDFKSDQLLEKDFIYKKQIENLRENITRLGRACFNAGSDPEVANILFADLKKSLPQLVLESSLHLLYLVT 759 (1008)
T ss_pred h-------ccchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCChhhhHHHHHHHHHhhhccccccccceeeeec
Confidence 0 011111 1222222332 111111122899998875555665544333322322110 000001111111
Q ss_pred ccccCcCChHHHHHHHHHHhhCCCCC------------------CC----CCCC-hh---HHHHHHHHHHHhccCCC---
Q psy14582 1258 EFRHITVREEEKLELQKLMERAPIPI------------------KE----STDE-PS---AKVNILLQAYISQLKLE--- 1308 (1689)
Q Consensus 1258 Ef~~i~vR~~E~~~l~~l~~~~p~~~------------------~~----~~~~-~~---~K~~~Llqa~is~~~l~--- 1308 (1689)
=|...- +...-.++-.+.+.+|-|. ++ ..-+ +- .=+.+.||.++...++.
T Consensus 760 P~~~~~-~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~fi~~~~~gqs~~~~~~~~~~~r~y~~l~L~~li~espi~~V~ 838 (1008)
T KOG0950|consen 760 PYLEVM-NDIDWLIYFQIYHTLPSPEQKLAKLLGVIESFIEKCVSGQSVRNLQNVQKRKRLYVALALQKLINESPIRTVA 838 (1008)
T ss_pred chHhhc-ccccHHHHHHHHhcCCcHHHHHHhhhchHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 110000 0111112222222222211 00 0001 11 11667799999988753
Q ss_pred -Cchh-hhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhcCC-Cc
Q psy14582 1309 -GFAL-MSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNF-PW 1385 (1689)
Q Consensus 1309 -~~~l-~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~~~i~~~~i~~~~~~~~-~~ 1385 (1689)
.|.. .+=+...++++.+...++.-+|.+-+|..+....-++.+.+..+.-.+..||..+|++..+.++++-..|+ ++
T Consensus 839 ~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~~rl~~g~~~eL~~Lmrv~~~~~~RAr~lf~Agf~tv 918 (1008)
T KOG0950|consen 839 EKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFYGRLSFGGHAELIPLMRVPDVKAERARQLFKAGFTSV 918 (1008)
T ss_pred HHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHHHHHhccchhhhhhhhcCchhHHHHHHHHHHhhccch
Confidence 2322 24556789999999999999999999985555555667778778888889999999999999999999998 78
Q ss_pred hhhccCChhhhhhhhc
Q psy14582 1386 ERLYDLGPNEIGELIR 1401 (1689)
Q Consensus 1386 ~~l~dl~~~el~~ll~ 1401 (1689)
..|..-++.++..-+.
T Consensus 919 ~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 919 GSIANATPEKLVKELP 934 (1008)
T ss_pred HHHhcCChHHHHHHhh
Confidence 8888888888877554
No 14
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.2e-39 Score=428.70 Aligned_cols=429 Identities=21% Similarity=0.279 Sum_probs=271.8
Q ss_pred CCCccHHHHHhcc-CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEc
Q psy14582 465 IDKLPRYVQHAFE-DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVA 543 (1689)
Q Consensus 465 ~~~Lp~~~~~~f~-g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~la 543 (1689)
++.|++.+++.|. +|..|||+|.+++|.++ +|+|+|++||||||||++|++|+++.+...... + ....+.++|||+
T Consensus 15 ~~~l~~~v~~~~~~~~~~~tpiQ~~Ai~~il-~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~-~-~~~~~~~~LyIs 91 (876)
T PRK13767 15 LDLLRPYVREWFKEKFGTFTPPQRYAIPLIH-EGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE-G-ELEDKVYCLYVS 91 (876)
T ss_pred HhhcCHHHHHHHHHccCCCCHHHHHHHHHHH-cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc-c-CCCCCeEEEEEc
Confidence 4567888888886 89999999999999887 899999999999999999999999988753211 1 113467999999
Q ss_pred cchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCC
Q psy14582 544 PMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNS 623 (1689)
Q Consensus 544 PtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~ 623 (1689)
|||+|+.|++..+.... ..+..+..... ..
T Consensus 92 PtraLa~di~~~L~~~l------------------------------------------~~i~~~~~~~g-~~------- 121 (876)
T PRK13767 92 PLRALNNDIHRNLEEPL------------------------------------------TEIREIAKERG-EE------- 121 (876)
T ss_pred CHHHHHHHHHHHHHHHH------------------------------------------HHHHHHHHhcC-CC-------
Confidence 99999999986653311 01111110000 00
Q ss_pred CccccceeEEEEechhhHH-HHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCC
Q psy14582 624 FRPVALEQQYIGVTEKKAL-KRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDS 702 (1689)
Q Consensus 624 ~r~~~l~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~ 702 (1689)
.. .+. +....++... .+.+.. ...++|+|+| |+ .+....+
T Consensus 122 ~~--~i~--v~v~~Gdt~~~~r~~~l-----------~~~p~IlVtT--------PE-~L~~ll~--------------- 162 (876)
T PRK13767 122 LP--EIR--VAIRTGDTSSYEKQKML-----------KKPPHILITT--------PE-SLAILLN--------------- 162 (876)
T ss_pred cC--Cee--EEEEcCCCCHHHHHHHH-----------hCCCCEEEec--------HH-HHHHHhc---------------
Confidence 00 000 0000011111 111111 1167899999 99 5544333
Q ss_pred CcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcc
Q psy14582 703 EVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHI 782 (1689)
Q Consensus 703 ~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~ 782 (1689)
. .+ +... +.
T Consensus 163 -----------------------------------------------------------~--~~-~~~~------l~--- 171 (876)
T PRK13767 163 -----------------------------------------------------------S--PK-FREK------LR--- 171 (876)
T ss_pred -----------------------------------------------------------C--hh-HHHH------Hh---
Confidence 0 01 0000 00
Q ss_pred ccCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHH
Q psy14582 783 NADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDV 861 (1689)
Q Consensus 783 ~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv 861 (1689)
.++++|+||+|.+.+ .||..++.++.|+.+.. ....|+|++|||++|.+++
T Consensus 172 -------------------------~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~v 223 (876)
T PRK13767 172 -------------------------TVKWVIVDEIHSLAENKRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEV 223 (876)
T ss_pred -------------------------cCCEEEEechhhhccCccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHH
Confidence 189999999999986 79999999998876533 3578999999999999999
Q ss_pred HHHhhcCCC----ccEEEecC-CCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHh-CCCeEEEEeCChHHHHHHH
Q psy14582 862 ATLLRIKPE----TGLFYFDN-SFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHA-GRNQLLVFVHSRKETGKTA 935 (1689)
Q Consensus 862 a~~L~~~~~----~~~~~f~~-~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~-~~~~vLVFv~srk~~~~~a 935 (1689)
+.|+..... ..+..... ..++.++............. ...+...++..+.+.. .++++||||+||+.|+.++
T Consensus 224 a~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~--~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la 301 (876)
T PRK13767 224 AKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTP--AEEISEALYETLHELIKEHRTTLIFTNTRSGAERVL 301 (876)
T ss_pred HHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccc--cchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHH
Confidence 999976311 11222222 22232222111000000000 0011122333333322 3578999999999999999
Q ss_pred HHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchh
Q psy14582 936 RAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATL 1015 (1689)
Q Consensus 936 ~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl 1015 (1689)
..|...... .....++++|||+|++.+|..+++.|++|.++|||||+++
T Consensus 302 ~~L~~~~~~-------------------------------~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~L 350 (876)
T PRK13767 302 YNLRKRFPE-------------------------------EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSL 350 (876)
T ss_pred HHHHHhchh-------------------------------hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChH
Confidence 988753211 0134689999999999999999999999999999999999
Q ss_pred ccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCC
Q psy14582 1016 AWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1016 ~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g 1095 (1689)
++|||+|+|++| | .|+. +.++.+|+||+|||||.+
T Consensus 351 e~GIDip~Vd~V-----------------I----------------------~~~~------P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 351 ELGIDIGYIDLV-----------------V----------------------LLGS------PKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred HhcCCCCCCcEE-----------------E----------------------EeCC------CCCHHHHHHhcccCCCCC
Confidence 999999999988 3 1332 246899999999999874
Q ss_pred CCCccEEEEEecC-CcH-HH--HHH-HhhC-cCCc--ccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhh
Q psy14582 1096 YDTKGEGVLITNH-SEL-QY--YLS-LLNH-QLPV--ESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRM 1164 (1689)
Q Consensus 1096 ~d~~G~~iil~~~-~~~-~~--y~~-ll~~-~~pi--eS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl 1164 (1689)
. ..+.+++++.+ .+. +. +.+ .... ..|+ ...-...|..|+.+-++. ..-+.+++.+|+..||.|+.+
T Consensus 386 g-~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~-~~~~~~~~~~~~~~~~~~~~l 460 (876)
T PRK13767 386 G-EVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIE-RPWDIEEAYNIVRRAYPYRDL 460 (876)
T ss_pred C-CCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHc-CCCCHHHHHHHHhccCCcccC
Confidence 2 33445555443 222 11 111 1111 1122 222223456676665444 466899999999999999754
No 15
>KOG0331|consensus
Probab=100.00 E-value=5.6e-40 Score=396.65 Aligned_cols=354 Identities=20% Similarity=0.243 Sum_probs=252.9
Q ss_pred CCCCccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEE
Q psy14582 464 PIDKLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIY 541 (1689)
Q Consensus 464 ~~~~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~ 541 (1689)
....|++.+..++. ||+.|||||+++||.++ .|+|+++.|.||||||++|+||++.++...... ....+++++|+
T Consensus 94 ~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l-~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~--~~~~~~P~vLV 170 (519)
T KOG0331|consen 94 QELGLSEELMKALKEQGFEKPTPIQAQGWPIAL-SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGK--LSRGDGPIVLV 170 (519)
T ss_pred hcccccHHHHHHHHhcCCCCCchhhhcccceec-cCCceEEEeccCCcchhhhhhHHHHHHHhcccc--ccCCCCCeEEE
Confidence 33456677666665 99999999999999999 899999999999999999999999999863111 11336789999
Q ss_pred EccchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeec
Q psy14582 542 VAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFD 621 (1689)
Q Consensus 542 laPtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~ 621 (1689)
++||||||.|+..++.+-- .....+.+++.+-.+...+.... .
T Consensus 171 L~PTRELA~QV~~~~~~~~-------------------------~~~~~~~~cvyGG~~~~~Q~~~l------~------ 213 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFG-------------------------KSLRLRSTCVYGGAPKGPQLRDL------E------ 213 (519)
T ss_pred EcCcHHHHHHHHHHHHHHc-------------------------CCCCccEEEEeCCCCccHHHHHH------h------
Confidence 9999999999986553210 01113445554444433333332 0
Q ss_pred CCCccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCC
Q psy14582 622 NSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVD 701 (1689)
Q Consensus 622 ~~~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d 701 (1689)
...+|+|+| |+...|....|
T Consensus 214 ---------------------------------------~gvdiviaT--------PGRl~d~le~g------------- 233 (519)
T KOG0331|consen 214 ---------------------------------------RGVDVVIAT--------PGRLIDLLEEG------------- 233 (519)
T ss_pred ---------------------------------------cCCcEEEeC--------ChHHHHHHHcC-------------
Confidence 167899999 99444443332
Q ss_pred CCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhc
Q psy14582 702 SEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKH 781 (1689)
Q Consensus 702 ~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~ 781 (1689)
++-.
T Consensus 234 ----------------------------------------------------------------~~~l------------ 237 (519)
T KOG0331|consen 234 ----------------------------------------------------------------SLNL------------ 237 (519)
T ss_pred ----------------------------------------------------------------Cccc------------
Confidence 0000
Q ss_pred cccCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHH
Q psy14582 782 INADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYK 859 (1689)
Q Consensus 782 ~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~ 859 (1689)
..+.++|+||++.+.| ...+.++.|+.++ ..+..|++++|||+| ..+
T Consensus 238 -------------------------~~v~ylVLDEADrMldmGFe~qI~~Il~~i------~~~~rQtlm~saTwp~~v~ 286 (519)
T KOG0331|consen 238 -------------------------SRVTYLVLDEADRMLDMGFEPQIRKILSQI------PRPDRQTLMFSATWPKEVR 286 (519)
T ss_pred -------------------------cceeEEEeccHHhhhccccHHHHHHHHHhc------CCCcccEEEEeeeccHHHH
Confidence 0188999999999988 6777777776542 133447999999999 677
Q ss_pred HHHHHhhcCCCccEEEec-CCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHH
Q psy14582 860 DVATLLRIKPETGLFYFD-NSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAI 938 (1689)
Q Consensus 860 dva~~L~~~~~~~~~~f~-~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L 938 (1689)
.+|.-+..++....+... .......+.|.+..++...+..++.. +...+. ...++++||||.|++.|..+++.|
T Consensus 287 ~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~----lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l 361 (519)
T KOG0331|consen 287 QLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK----LLEDIS-SDSEGKVIIFCETKRTCDELARNL 361 (519)
T ss_pred HHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH----HHHHHh-ccCCCcEEEEecchhhHHHHHHHH
Confidence 888766555543222212 11223345666666665444333322 111121 234579999999999999999999
Q ss_pred HHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccC
Q psy14582 939 RDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWG 1018 (1689)
Q Consensus 939 ~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rG 1018 (1689)
...+.. ....||+.++.+|..+++.|++|...||||||+++||
T Consensus 362 ~~~~~~-------------------------------------a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRG 404 (519)
T KOG0331|consen 362 RRKGWP-------------------------------------AVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARG 404 (519)
T ss_pred HhcCcc-------------------------------------eeeecccccHHHHHHHHHhcccCCcceEEEccccccc
Confidence 874333 2334999999999999999999999999999999999
Q ss_pred CCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCC
Q psy14582 1019 VNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDT 1098 (1689)
Q Consensus 1019 IDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~ 1098 (1689)
||||+|++| +++++|.. +.+|+||+||+||+| .
T Consensus 405 LDi~dV~lV------------------------InydfP~~---------------------vEdYVHRiGRTGRa~--~ 437 (519)
T KOG0331|consen 405 LDVPDVDLV------------------------INYDFPNN---------------------VEDYVHRIGRTGRAG--K 437 (519)
T ss_pred CCCccccEE------------------------EeCCCCCC---------------------HHHHHhhcCccccCC--C
Confidence 999999999 45555544 899999999999988 8
Q ss_pred ccEEEEEecCCcHHH
Q psy14582 1099 KGEGVLITNHSELQY 1113 (1689)
Q Consensus 1099 ~G~~iil~~~~~~~~ 1113 (1689)
.|.++.|.+..+...
T Consensus 438 ~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 438 KGTAITFFTSDNAKL 452 (519)
T ss_pred CceEEEEEeHHHHHH
Confidence 999999998866543
No 16
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.4e-38 Score=413.56 Aligned_cols=360 Identities=19% Similarity=0.192 Sum_probs=249.1
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|++.+.+++. ||++||++|.+++|.++ .|+|++++||||||||+||++|+++.+... .+.++|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il-~G~nvvv~apTGSGKTla~~LPiL~~l~~~---------~~~~aL~l~P 89 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAH-AGRHVVVATGTASGKSLAYQLPVLSALADD---------PRATALYLAP 89 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHH-CCCCEEEECCCCCcHHHHHHHHHHHHHhhC---------CCcEEEEEcC
Confidence 57888888886 99999999999999888 899999999999999999999999998742 3468999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
|||||+|+...+.+-. ...+++..+.+
T Consensus 90 traLa~q~~~~l~~l~--------------------------~~~i~v~~~~G--------------------------- 116 (742)
T TIGR03817 90 TKALAADQLRAVRELT--------------------------LRGVRPATYDG--------------------------- 116 (742)
T ss_pred hHHHHHHHHHHHHHhc--------------------------cCCeEEEEEeC---------------------------
Confidence 9999999996552200 00111111111
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
+......+.. ...++|+|+| |+ .+....-
T Consensus 117 --------------dt~~~~r~~i-----------~~~~~IivtT--------Pd-~L~~~~L----------------- 145 (742)
T TIGR03817 117 --------------DTPTEERRWA-----------REHARYVLTN--------PD-MLHRGIL----------------- 145 (742)
T ss_pred --------------CCCHHHHHHH-----------hcCCCEEEEC--------hH-HHHHhhc-----------------
Confidence 1111110000 1157899999 98 2211000
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
|.. .+ ...+ +.
T Consensus 146 --------------------------------------------------------~~~-~~-~~~~---l~-------- 156 (742)
T TIGR03817 146 --------------------------------------------------------PSH-AR-WARF---LR-------- 156 (742)
T ss_pred --------------------------------------------------------cch-hH-HHHH---Hh--------
Confidence 000 00 0000 00
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATL 864 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~ 864 (1689)
.++++|+||+|.+.+.+|..+..++.|+.+.....+.+.|++++|||++|..+++.+
T Consensus 157 -----------------------~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~ 213 (742)
T TIGR03817 157 -----------------------RLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASR 213 (742)
T ss_pred -----------------------cCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHH
Confidence 189999999999988889999999999888777777789999999999999999988
Q ss_pred hhcCCCccEEEecCCCcccceEEEEEeech------hh----HHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q psy14582 865 LRIKPETGLFYFDNSFRPVALEQQYIGVTE------KK----ALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934 (1689)
Q Consensus 865 L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~------~~----~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~ 934 (1689)
+...+ ....+.+..|..........+. .. ...........+.. +.. .+.++||||+||+.|+.+
T Consensus 214 l~g~~---~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~-l~~--~~~~~IVF~~sr~~ae~l 287 (742)
T TIGR03817 214 LIGAP---VVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLAD-LVA--EGARTLTFVRSRRGAELV 287 (742)
T ss_pred HcCCC---eEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHH-HHH--CCCCEEEEcCCHHHHHHH
Confidence 77654 3334444444332222211111 00 00000011111211 112 357999999999999999
Q ss_pred HHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcch
Q psy14582 935 ARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTAT 1014 (1689)
Q Consensus 935 a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~v 1014 (1689)
+..|....... ...+..++..|||||++.+|..+++.|++|++++||||++
T Consensus 288 ~~~l~~~l~~~-----------------------------~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~ 338 (742)
T TIGR03817 288 AAIARRLLGEV-----------------------------DPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNA 338 (742)
T ss_pred HHHHHHHHHhh-----------------------------ccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECch
Confidence 99887532110 0112346788999999999999999999999999999999
Q ss_pred hccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCC
Q psy14582 1015 LAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRP 1094 (1689)
Q Consensus 1015 l~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~ 1094 (1689)
+++|||||++++| | .+++| .++.+|+||+|||||.
T Consensus 339 lerGIDI~~vd~V-----------------I-------~~~~P---------------------~s~~~y~qRiGRaGR~ 373 (742)
T TIGR03817 339 LELGVDISGLDAV-----------------V-------IAGFP---------------------GTRASLWQQAGRAGRR 373 (742)
T ss_pred HhccCCcccccEE-----------------E-------EeCCC---------------------CCHHHHHHhccccCCC
Confidence 9999999999999 3 33344 3589999999999999
Q ss_pred CCCCccEEEEEecCCcHHHH
Q psy14582 1095 QYDTKGEGVLITNHSELQYY 1114 (1689)
Q Consensus 1095 g~d~~G~~iil~~~~~~~~y 1114 (1689)
| ..|.+++++.++..+.|
T Consensus 374 G--~~g~ai~v~~~~~~d~~ 391 (742)
T TIGR03817 374 G--QGALVVLVARDDPLDTY 391 (742)
T ss_pred C--CCcEEEEEeCCChHHHH
Confidence 8 78999999886554443
No 17
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=9.3e-39 Score=406.88 Aligned_cols=360 Identities=20% Similarity=0.231 Sum_probs=242.1
Q ss_pred CCCCCCCCCCccCCCCccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCC
Q psy14582 452 KPKPMGPDETLVPIDKLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINAD 529 (1689)
Q Consensus 452 ~~~p~~~~~~l~~~~~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~ 529 (1689)
.|.|..++..+ .||+++.+++. ||++|||||.+++|.++ +|+|+|++||||||||++|+||++.++......
T Consensus 125 ~p~p~~~f~~~----~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l-~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~- 198 (545)
T PTZ00110 125 VPKPVVSFEYT----SFPDYILKSLKNAGFTEPTPIQVQGWPIAL-SGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL- 198 (545)
T ss_pred CCcccCCHhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc-
Confidence 34555555543 68999998886 99999999999999999 899999999999999999999999888653211
Q ss_pred CCCCCCCeEEEEEccchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHH
Q psy14582 530 GTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLL 609 (1689)
Q Consensus 530 g~~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l 609 (1689)
....++.+|||+||||||.|+...+.+-. ....+++....+..+
T Consensus 199 --~~~~gp~~LIL~PTreLa~Qi~~~~~~~~-------------------------~~~~i~~~~~~gg~~--------- 242 (545)
T PTZ00110 199 --RYGDGPIVLVLAPTRELAEQIREQCNKFG-------------------------ASSKIRNTVAYGGVP--------- 242 (545)
T ss_pred --cCCCCcEEEEECChHHHHHHHHHHHHHHh-------------------------cccCccEEEEeCCCC---------
Confidence 11246789999999999999985543211 000111111111100
Q ss_pred hhCCCCCceeecCCCccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCC
Q psy14582 610 RIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGG 689 (1689)
Q Consensus 610 ~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~ 689 (1689)
....... ....++|+|+| |+...+...++
T Consensus 243 ------------------------------~~~q~~~------------l~~~~~IlVaT--------PgrL~d~l~~~- 271 (545)
T PTZ00110 243 ------------------------------KRGQIYA------------LRRGVEILIAC--------PGRLIDFLESN- 271 (545)
T ss_pred ------------------------------HHHHHHH------------HHcCCCEEEEC--------HHHHHHHHHcC-
Confidence 0000000 01267899999 98222221110
Q ss_pred CcceeEEEEeCCCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHH
Q psy14582 690 SEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNV 769 (1689)
Q Consensus 690 ~e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~ 769 (1689)
...
T Consensus 272 ----------------------------------------------------------------------------~~~- 274 (545)
T PTZ00110 272 ----------------------------------------------------------------------------VTN- 274 (545)
T ss_pred ----------------------------------------------------------------------------CCC-
Confidence 000
Q ss_pred HHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceE
Q psy14582 770 ALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRL 848 (1689)
Q Consensus 770 ~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~ri 848 (1689)
...++++|+||+|.+.+ ...+.+..++. ...+..|+
T Consensus 275 ------------------------------------l~~v~~lViDEAd~mld~gf~~~i~~il~-------~~~~~~q~ 311 (545)
T PTZ00110 275 ------------------------------------LRRVTYLVLDEADRMLDMGFEPQIRKIVS-------QIRPDRQT 311 (545)
T ss_pred ------------------------------------hhhCcEEEeehHHhhhhcchHHHHHHHHH-------hCCCCCeE
Confidence 00188999999999887 44444444433 34678899
Q ss_pred EEEecCCC-CHHHHHHHhhcCCCccEEEecCCC--cccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHh-CCCeEEEE
Q psy14582 849 VGLSATLP-NYKDVATLLRIKPETGLFYFDNSF--RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHA-GRNQLLVF 924 (1689)
Q Consensus 849 V~lSATl~-n~~dva~~L~~~~~~~~~~f~~~~--RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~-~~~~vLVF 924 (1689)
+++|||+| ..+.++.++...... ........ ....+.+.+..+....+...+. . .+.... .+.++|||
T Consensus 312 l~~SAT~p~~v~~l~~~l~~~~~v-~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~---~----ll~~~~~~~~k~LIF 383 (545)
T PTZ00110 312 LMWSATWPKEVQSLARDLCKEEPV-HVNVGSLDLTACHNIKQEVFVVEEHEKRGKLK---M----LLQRIMRDGDKILIF 383 (545)
T ss_pred EEEEeCCCHHHHHHHHHHhccCCE-EEEECCCccccCCCeeEEEEEEechhHHHHHH---H----HHHHhcccCCeEEEE
Confidence 99999999 456677666532111 11111111 1123555665555433322221 1 111212 46799999
Q ss_pred eCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcC
Q psy14582 925 VHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADR 1004 (1689)
Q Consensus 925 v~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g 1004 (1689)
|++++.|..++..|...+. .+..+||+|++.+|..+++.|++|
T Consensus 384 ~~t~~~a~~l~~~L~~~g~-------------------------------------~~~~ihg~~~~~eR~~il~~F~~G 426 (545)
T PTZ00110 384 VETKKGADFLTKELRLDGW-------------------------------------PALCIHGDKKQEERTWVLNEFKTG 426 (545)
T ss_pred ecChHHHHHHHHHHHHcCC-------------------------------------cEEEEECCCcHHHHHHHHHHHhcC
Confidence 9999999999998864221 234569999999999999999999
Q ss_pred CeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHH
Q psy14582 1005 HIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDV 1084 (1689)
Q Consensus 1005 ~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~ 1084 (1689)
.++|||||++++||||||+|++| | .+++|. ++.+|
T Consensus 427 ~~~ILVaTdv~~rGIDi~~v~~V-----------------I-------~~d~P~---------------------s~~~y 461 (545)
T PTZ00110 427 KSPIMIATDVASRGLDVKDVKYV-----------------I-------NFDFPN---------------------QIEDY 461 (545)
T ss_pred CCcEEEEcchhhcCCCcccCCEE-----------------E-------EeCCCC---------------------CHHHH
Confidence 99999999999999999999999 3 344443 48899
Q ss_pred HHHhcccCCCCCCCccEEEEEecCCcHHHHHH
Q psy14582 1085 LQMLGRAGRPQYDTKGEGVLITNHSELQYYLS 1116 (1689)
Q Consensus 1085 lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 1116 (1689)
+||+|||||.| ..|.+++|.+..+......
T Consensus 462 vqRiGRtGR~G--~~G~ai~~~~~~~~~~~~~ 491 (545)
T PTZ00110 462 VHRIGRTGRAG--AKGASYTFLTPDKYRLARD 491 (545)
T ss_pred HHHhcccccCC--CCceEEEEECcchHHHHHH
Confidence 99999999998 7899999998877654443
No 18
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2e-38 Score=402.85 Aligned_cols=362 Identities=20% Similarity=0.217 Sum_probs=241.6
Q ss_pred CCCCCCCCCccCCCCccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCC
Q psy14582 453 PKPMGPDETLVPIDKLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADG 530 (1689)
Q Consensus 453 ~~p~~~~~~l~~~~~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g 530 (1689)
|.|..++..+ .||+.+...+. ||+.|||+|.+++|.++ +|+|+|++||||||||++|++|++.++...... .
T Consensus 117 p~pi~~f~~~----~l~~~l~~~L~~~g~~~ptpiQ~~aip~il-~g~dviv~ApTGSGKTlayllPil~~l~~~~~~-~ 190 (518)
T PLN00206 117 PPPILSFSSC----GLPPKLLLNLETAGYEFPTPIQMQAIPAAL-SGRSLLVSADTGSGKTASFLVPIISRCCTIRSG-H 190 (518)
T ss_pred CchhcCHHhC----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEecCCCCccHHHHHHHHHHHHhhccc-c
Confidence 3444444443 68999988886 99999999999999998 899999999999999999999999988643211 1
Q ss_pred CCCCCCeEEEEEccchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHh
Q psy14582 531 TINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLR 610 (1689)
Q Consensus 531 ~~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~ 610 (1689)
.....++++|||+||||||.|+...+..-. ......++++.+..+...++
T Consensus 191 ~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~-------------------------~~~~~~~~~~~gG~~~~~q~----- 240 (518)
T PLN00206 191 PSEQRNPLAMVLTPTRELCVQVEDQAKVLG-------------------------KGLPFKTALVVGGDAMPQQL----- 240 (518)
T ss_pred ccccCCceEEEEeCCHHHHHHHHHHHHHHh-------------------------CCCCceEEEEECCcchHHHH-----
Confidence 112256799999999999999874432100 00011111111100000000
Q ss_pred hCCCCCceeecCCCccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCC
Q psy14582 611 IKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGS 690 (1689)
Q Consensus 611 ~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~ 690 (1689)
.+.....+|+|+| |+ ++.....
T Consensus 241 ----------------------------------------------~~l~~~~~IiV~T--------Pg-rL~~~l~--- 262 (518)
T PLN00206 241 ----------------------------------------------YRIQQGVELIVGT--------PG-RLIDLLS--- 262 (518)
T ss_pred ----------------------------------------------HHhcCCCCEEEEC--------HH-HHHHHHH---
Confidence 0011267899999 99 3322221
Q ss_pred cceeEEEEeCCCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHH
Q psy14582 691 EGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVA 770 (1689)
Q Consensus 691 e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~ 770 (1689)
.+ +-
T Consensus 263 -----------------------------------------------------------------------~~-~~---- 266 (518)
T PLN00206 263 -----------------------------------------------------------------------KH-DI---- 266 (518)
T ss_pred -----------------------------------------------------------------------cC-Cc----
Confidence 00 00
Q ss_pred HHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEE
Q psy14582 771 LLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLV 849 (1689)
Q Consensus 771 lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV 849 (1689)
....++++|+||+|.+.+ .....+..++. . .++.|++
T Consensus 267 ----------------------------------~l~~v~~lViDEad~ml~~gf~~~i~~i~~-------~-l~~~q~l 304 (518)
T PLN00206 267 ----------------------------------ELDNVSVLVLDEVDCMLERGFRDQVMQIFQ-------A-LSQPQVL 304 (518)
T ss_pred ----------------------------------cchheeEEEeecHHHHhhcchHHHHHHHHH-------h-CCCCcEE
Confidence 000188999999998876 33333322221 1 2467999
Q ss_pred EEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccc-eEEEEEeechhhHHHHHHHhhHHHHHHHHHHh-CCCeEEEEeC
Q psy14582 850 GLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVA-LEQQYIGVTEKKALKRFQVMNDIVYEKVMEHA-GRNQLLVFVH 926 (1689)
Q Consensus 850 ~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~Rpvp-L~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~-~~~~vLVFv~ 926 (1689)
++|||+++ .+.++.++..++. .+......++.. +.+.+..+........ +++.+.... ...++||||+
T Consensus 305 ~~SATl~~~v~~l~~~~~~~~~--~i~~~~~~~~~~~v~q~~~~~~~~~k~~~-------l~~~l~~~~~~~~~~iVFv~ 375 (518)
T PLN00206 305 LFSATVSPEVEKFASSLAKDII--LISIGNPNRPNKAVKQLAIWVETKQKKQK-------LFDILKSKQHFKPPAVVFVS 375 (518)
T ss_pred EEEeeCCHHHHHHHHHhCCCCE--EEEeCCCCCCCcceeEEEEeccchhHHHH-------HHHHHHhhcccCCCEEEEcC
Confidence 99999994 5677777765432 333343334432 4455554444332221 222222211 2368999999
Q ss_pred ChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCe
Q psy14582 927 SRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHI 1006 (1689)
Q Consensus 927 srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i 1006 (1689)
|+..+..++..|... ....+..+||+|++.+|..+++.|++|.+
T Consensus 376 s~~~a~~l~~~L~~~------------------------------------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~ 419 (518)
T PLN00206 376 SRLGADLLANAITVV------------------------------------TGLKALSIHGEKSMKERREVMKSFLVGEV 419 (518)
T ss_pred CchhHHHHHHHHhhc------------------------------------cCcceEEeeCCCCHHHHHHHHHHHHCCCC
Confidence 999999888877531 11235678999999999999999999999
Q ss_pred EEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHH
Q psy14582 1007 QVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQ 1086 (1689)
Q Consensus 1007 ~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQ 1086 (1689)
+|||||++++||||+|+|++| | .+++| .++.+|+|
T Consensus 420 ~ILVaTdvl~rGiDip~v~~V-----------------I-------~~d~P---------------------~s~~~yih 454 (518)
T PLN00206 420 PVIVATGVLGRGVDLLRVRQV-----------------I-------IFDMP---------------------NTIKEYIH 454 (518)
T ss_pred CEEEEecHhhccCCcccCCEE-----------------E-------EeCCC---------------------CCHHHHHH
Confidence 999999999999999999999 3 34444 35889999
Q ss_pred HhcccCCCCCCCccEEEEEecCCcHHHHHHHh
Q psy14582 1087 MLGRAGRPQYDTKGEGVLITNHSELQYYLSLL 1118 (1689)
Q Consensus 1087 m~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll 1118 (1689)
|+|||||.| ..|.+++|++..+...+..+.
T Consensus 455 RiGRaGR~g--~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 455 QIGRASRMG--EKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred hccccccCC--CCeEEEEEEchhHHHHHHHHH
Confidence 999999998 789999999887766555443
No 19
>KOG0338|consensus
Probab=100.00 E-value=4.1e-39 Score=372.56 Aligned_cols=367 Identities=20% Similarity=0.274 Sum_probs=263.1
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|...+.+++. ||..|||||..+||.|+ -|+|++.||-||||||.||+||+|.+|...+. +....|+|+++|
T Consensus 187 NLSRPlLka~~~lGy~~PTpIQ~a~IPval-lgkDIca~A~TGsGKTAAF~lPiLERLlYrPk-----~~~~TRVLVL~P 260 (691)
T KOG0338|consen 187 NLSRPLLKACSTLGYKKPTPIQVATIPVAL-LGKDICACAATGSGKTAAFALPILERLLYRPK-----KVAATRVLVLVP 260 (691)
T ss_pred ccchHHHHHHHhcCCCCCCchhhhcccHHh-hcchhhheecccCCchhhhHHHHHHHHhcCcc-----cCcceeEEEEec
Confidence 56777777776 99999999999999999 79999999999999999999999999986532 335679999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
||+||.|++..+. +++.|.... .+
T Consensus 261 TRELaiQv~sV~~----------------------------------------------qlaqFt~I~--~~-------- 284 (691)
T KOG0338|consen 261 TRELAIQVHSVTK----------------------------------------------QLAQFTDIT--VG-------- 284 (691)
T ss_pred cHHHHHHHHHHHH----------------------------------------------HHHhhccce--ee--------
Confidence 9999999985442 333342211 11
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
.+-+.-.+..++.+ ...+++|+|+| |+ ++-+..|++ ..
T Consensus 285 ----------L~vGGL~lk~QE~~----------LRs~PDIVIAT--------PG-RlIDHlrNs-~s------------ 322 (691)
T KOG0338|consen 285 ----------LAVGGLDLKAQEAV----------LRSRPDIVIAT--------PG-RLIDHLRNS-PS------------ 322 (691)
T ss_pred ----------eeecCccHHHHHHH----------HhhCCCEEEec--------ch-hHHHHhccC-CC------------
Confidence 00012223333322 01289999999 99 555555521 00
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
| ++.
T Consensus 323 ---------------------f----------------------------------------~ld--------------- 326 (691)
T KOG0338|consen 323 ---------------------F----------------------------------------NLD--------------- 326 (691)
T ss_pred ---------------------c----------------------------------------ccc---------------
Confidence 0 000
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecCC-chhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYKDVA 862 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d~-rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~dva 862 (1689)
.+.++|+||++.+.++ +... +..++..++.+.|.++||||+. .+++++
T Consensus 327 -----------------------siEVLvlDEADRMLeegFade-------mnEii~lcpk~RQTmLFSATMteeVkdL~ 376 (691)
T KOG0338|consen 327 -----------------------SIEVLVLDEADRMLEEGFADE-------MNEIIRLCPKNRQTMLFSATMTEEVKDLA 376 (691)
T ss_pred -----------------------ceeEEEechHHHHHHHHHHHH-------HHHHHHhccccccceeehhhhHHHHHHHH
Confidence 0778999999977652 2222 2233445678899999999999 467777
Q ss_pred HHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhh
Q psy14582 863 TLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMC 942 (1689)
Q Consensus 863 ~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~ 942 (1689)
..--.+|.. +|.-.+..++..|.|.|+.+.......+-..+. .+....-...+||||.|++.|.++--.|--.+
T Consensus 377 slSL~kPvr-ifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~-----~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlg 450 (691)
T KOG0338|consen 377 SLSLNKPVR-IFVDPNKDTAPKLTQEFIRIRPKREGDREAMLA-----SLITRTFQDRTIVFVRTKKQAHRLRILLGLLG 450 (691)
T ss_pred HhhcCCCeE-EEeCCccccchhhhHHHheeccccccccHHHHH-----HHHHHhcccceEEEEehHHHHHHHHHHHHHhh
Confidence 665555543 555455555667888888776543322221111 11122224789999999999988776665444
Q ss_pred hhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCC
Q psy14582 943 LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 943 ~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp 1022 (1689)
...+ -.||.|++.+|...++.|+++.+.||||||+++||+||+
T Consensus 451 l~ag-------------------------------------ElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~ 493 (691)
T KOG0338|consen 451 LKAG-------------------------------------ELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIE 493 (691)
T ss_pred chhh-------------------------------------hhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCcc
Confidence 4333 339999999999999999999999999999999999999
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
+|..| +++++|.. +..|+||+||+.|+| +.|.+
T Consensus 494 gV~tV------------------------INy~mP~t---------------------~e~Y~HRVGRTARAG--RaGrs 526 (691)
T KOG0338|consen 494 GVQTV------------------------INYAMPKT---------------------IEHYLHRVGRTARAG--RAGRS 526 (691)
T ss_pred ceeEE------------------------EeccCchh---------------------HHHHHHHhhhhhhcc--cCcce
Confidence 99999 67777765 789999999999999 89999
Q ss_pred EEEecCCcHHHHHHHhhCcCCcccccccccc
Q psy14582 1103 VLITNHSELQYYLSLLNHQLPVESQMISKLP 1133 (1689)
Q Consensus 1103 iil~~~~~~~~y~~ll~~~~pieS~l~~~l~ 1133 (1689)
|.++..++....+..+.+..-..|.+.+.+.
T Consensus 527 VtlvgE~dRkllK~iik~~~~a~~klk~R~i 557 (691)
T KOG0338|consen 527 VTLVGESDRKLLKEIIKSSTKAGSKLKNRNI 557 (691)
T ss_pred EEEeccccHHHHHHHHhhhhhcccchhhcCC
Confidence 9999999988888777765545555555443
No 20
>KOG0947|consensus
Probab=100.00 E-value=4.1e-39 Score=393.63 Aligned_cols=274 Identities=29% Similarity=0.394 Sum_probs=211.8
Q ss_pred hhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
+.++|+||+|.+.| +||.+||.++- .++..+++|+||||+||..++|.|+|..+.+.+++.+...|||||++
T Consensus 404 vE~VIFDEVHYiND~eRGvVWEEViI-------MlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh 476 (1248)
T KOG0947|consen 404 VEFVIFDEVHYINDVERGVVWEEVII-------MLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEH 476 (1248)
T ss_pred cceEEEeeeeecccccccccceeeee-------eccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEE
Confidence 89999999999999 99999998764 36889999999999999999999999998888999999999999998
Q ss_pred EEEeechhhH---------HH----HHHHh-----------------------------------------hH---HHHH
Q psy14582 888 QYIGVTEKKA---------LK----RFQVM-----------------------------------------ND---IVYE 910 (1689)
Q Consensus 888 ~~~~~~~~~~---------~~----~~~~m-----------------------------------------~~---~~~~ 910 (1689)
.+..-.+..+ .+ ....+ ++ ..|-
T Consensus 477 ~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l 556 (1248)
T KOG0947|consen 477 YLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWL 556 (1248)
T ss_pred EEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHH
Confidence 7643211000 00 00000 00 1233
Q ss_pred HHHHHhC---CCeEEEEeCChHHHHHHHHHHHHhhhhcc----ccchhhhcCchhHHHHHHhhhhccc--------hhhh
Q psy14582 911 KVMEHAG---RNQLLVFVHSRKETGKTARAIRDMCLEKD----TLGQFLREGSASMEVLRTEADQVKN--------GELR 975 (1689)
Q Consensus 911 ~i~~~~~---~~~vLVFv~srk~~~~~a~~L~~~~~~~~----~l~~fl~~~~~~~e~l~~~~~~~~~--------~~L~ 975 (1689)
.+..+.. --|++|||-||+.|+..|..|........ .+..|+ .+....++. ..+.
T Consensus 557 ~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl----------~k~~~rLk~~DR~LPQvl~m~ 626 (1248)
T KOG0947|consen 557 DLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFL----------SKAVARLKGEDRNLPQVLSMR 626 (1248)
T ss_pred HHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHH----------HHHHHhcChhhccchHHHHHH
Confidence 3333332 34899999999999999999986543211 111121 122222221 3467
Q ss_pred cccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCC
Q psy14582 976 DLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVN 1055 (1689)
Q Consensus 976 ~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvN 1055 (1689)
+++.+|||+||||+-+--++.||-+|..|.++|| +||.|+|+|||
T Consensus 627 ~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVL-----------------------------------FATETFAMGVN 671 (1248)
T KOG0947|consen 627 SLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVL-----------------------------------FATETFAMGVN 671 (1248)
T ss_pred HHHhhcchhhcccchHHHHHHHHHHHhcCceEEE-----------------------------------eehhhhhhhcC
Confidence 8899999999999999999999999999999999 99999999999
Q ss_pred CCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCC--cHHHHHHHhh-CcCCccccccccc
Q psy14582 1056 LPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS--ELQYYLSLLN-HQLPVESQMISKL 1132 (1689)
Q Consensus 1056 LPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~--~~~~y~~ll~-~~~pieS~l~~~l 1132 (1689)
+||++||+-+...+|+.. +.++.+-+|.||+|||||.|.|..|.+||+|... ......+++. .+.+++|||.-..
T Consensus 672 MPARtvVF~Sl~KhDG~e--fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~SQFRlTY 749 (1248)
T KOG0947|consen 672 MPARTVVFSSLRKHDGNE--FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLESQFRLTY 749 (1248)
T ss_pred CCceeEEeeehhhccCcc--eeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhhhhhhhHH
Confidence 999999999999999865 4579999999999999999999999999999874 5566666554 6789999997554
Q ss_pred ccch
Q psy14582 1133 PDML 1136 (1689)
Q Consensus 1133 ~d~l 1136 (1689)
.-.|
T Consensus 750 ~MIL 753 (1248)
T KOG0947|consen 750 GMIL 753 (1248)
T ss_pred HHHH
Confidence 3333
No 21
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-38 Score=395.42 Aligned_cols=346 Identities=22% Similarity=0.295 Sum_probs=246.3
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|.+.+.+++. ||..|||||.+++|.++ .|+|++++|+||||||+||++|+++.+...... ....+|+++|
T Consensus 35 ~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l-~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~------~~~~aLil~P 107 (513)
T COG0513 35 GLSPELLQALKDLGFEEPTPIQLAAIPLIL-AGRDVLGQAQTGTGKTAAFLLPLLQKILKSVER------KYVSALILAP 107 (513)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhccccc------CCCceEEECC
Confidence 46777777776 99999999999999999 799999999999999999999999997742100 1111999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
|||||.|+++.+.+-..+ ....+++.+.+-.+...+.
T Consensus 108 TRELA~Qi~~~~~~~~~~------------------------~~~~~~~~i~GG~~~~~q~------------------- 144 (513)
T COG0513 108 TRELAVQIAEELRKLGKN------------------------LGGLRVAVVYGGVSIRKQI------------------- 144 (513)
T ss_pred CHHHHHHHHHHHHHHHhh------------------------cCCccEEEEECCCCHHHHH-------------------
Confidence 999999999665331100 0012222222111111111
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
.++. + .++|||+| |+...|.+.++
T Consensus 145 --------------------~~l~---------~---~~~ivVaT--------PGRllD~i~~~---------------- 168 (513)
T COG0513 145 --------------------EALK---------R---GVDIVVAT--------PGRLLDLIKRG---------------- 168 (513)
T ss_pred --------------------HHHh---------c---CCCEEEEC--------ccHHHHHHHcC----------------
Confidence 1111 1 48999999 99444433331
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
++
T Consensus 169 --------------------------------------------------------------~l---------------- 170 (513)
T COG0513 169 --------------------------------------------------------------KL---------------- 170 (513)
T ss_pred --------------------------------------------------------------Cc----------------
Confidence 00
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCC-HHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN-YKDVA 862 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dva 862 (1689)
-...++++|+||++.+.+ .....++.++. ..+.+.|++++|||+|. ..+++
T Consensus 171 --------------------~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~-------~~p~~~qtllfSAT~~~~i~~l~ 223 (513)
T COG0513 171 --------------------DLSGVETLVLDEADRMLDMGFIDDIEKILK-------ALPPDRQTLLFSATMPDDIRELA 223 (513)
T ss_pred --------------------chhhcCEEEeccHhhhhcCCCHHHHHHHHH-------hCCcccEEEEEecCCCHHHHHHH
Confidence 000189999999999988 56666666654 34668999999999994 45555
Q ss_pred HHhhcCCCccEEEecCCC--cccceEEEEEeechhh-HHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHH
Q psy14582 863 TLLRIKPETGLFYFDNSF--RPVALEQQYIGVTEKK-ALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIR 939 (1689)
Q Consensus 863 ~~L~~~~~~~~~~f~~~~--RpvpL~~~~~~~~~~~-~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~ 939 (1689)
.-+..++.. +....... .+..+.|.++.+.... +.. +...++......++||||+|+..|..++..|.
T Consensus 224 ~~~l~~p~~-i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~--------~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~ 294 (513)
T COG0513 224 RRYLNDPVE-IEVSVEKLERTLKKIKQFYLEVESEEEKLE--------LLLKLLKDEDEGRVIVFVRTKRLVEELAESLR 294 (513)
T ss_pred HHHccCCcE-EEEccccccccccCceEEEEEeCCHHHHHH--------HHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHH
Confidence 545455542 22221222 3456888888887644 322 22234444445689999999999999999988
Q ss_pred HhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCC
Q psy14582 940 DMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGV 1019 (1689)
Q Consensus 940 ~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGI 1019 (1689)
..+.. ++..||+|++.+|..+++.|++|.++||||||+++|||
T Consensus 295 ~~g~~-------------------------------------~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGi 337 (513)
T COG0513 295 KRGFK-------------------------------------VAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGL 337 (513)
T ss_pred HCCCe-------------------------------------EEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccC
Confidence 75443 34449999999999999999999999999999999999
Q ss_pred CCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCc
Q psy14582 1020 NLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTK 1099 (1689)
Q Consensus 1020 DIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~ 1099 (1689)
|||+|++| .++|+|.. +.+|+||+||+||+| ..
T Consensus 338 Di~~v~~V------------------------inyD~p~~---------------------~e~yvHRiGRTgRaG--~~ 370 (513)
T COG0513 338 DIPDVSHV------------------------INYDLPLD---------------------PEDYVHRIGRTGRAG--RK 370 (513)
T ss_pred Ccccccee------------------------EEccCCCC---------------------HHHheeccCccccCC--CC
Confidence 99999999 57777744 889999999999999 89
Q ss_pred cEEEEEecCC-cHHHHHH
Q psy14582 1100 GEGVLITNHS-ELQYYLS 1116 (1689)
Q Consensus 1100 G~~iil~~~~-~~~~y~~ 1116 (1689)
|.++.|+.+. +...+.+
T Consensus 371 G~ai~fv~~~~e~~~l~~ 388 (513)
T COG0513 371 GVAISFVTEEEEVKKLKR 388 (513)
T ss_pred CeEEEEeCcHHHHHHHHH
Confidence 9999999875 4444433
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9.1e-38 Score=392.11 Aligned_cols=348 Identities=20% Similarity=0.231 Sum_probs=240.1
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|++++..++. ||++|||+|.+++|.++ .|+|+|++||||||||++|++|+++.+...... .......++|||+|
T Consensus 7 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il-~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~--~~~~~~~~aLil~P 83 (456)
T PRK10590 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH--AKGRRPVRALILTP 83 (456)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc--cccCCCceEEEEeC
Confidence 57888888886 99999999999999988 799999999999999999999999998753211 11123468999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
||+||.|+.+.+..-. .....+++.+.+..+
T Consensus 84 treLa~Qi~~~~~~~~-------------------------~~~~~~~~~~~gg~~------------------------ 114 (456)
T PRK10590 84 TRELAAQIGENVRDYS-------------------------KYLNIRSLVVFGGVS------------------------ 114 (456)
T ss_pred cHHHHHHHHHHHHHHh-------------------------ccCCCEEEEEECCcC------------------------
Confidence 9999999986553211 000112222211111
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
...+. ....+.++|+|+| |+..++...++
T Consensus 115 -----------------~~~~~----------~~l~~~~~IiV~T--------P~rL~~~~~~~---------------- 143 (456)
T PRK10590 115 -----------------INPQM----------MKLRGGVDVLVAT--------PGRLLDLEHQN---------------- 143 (456)
T ss_pred -----------------HHHHH----------HHHcCCCcEEEEC--------hHHHHHHHHcC----------------
Confidence 11100 0111367899999 99322221110
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
. . . +
T Consensus 144 -----------------------------------------------------------~---~-~-------l------ 147 (456)
T PRK10590 144 -----------------------------------------------------------A---V-K-------L------ 147 (456)
T ss_pred -----------------------------------------------------------C---c-c-------c------
Confidence 0 0 0 0
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCC-HHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN-YKDVA 862 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dva 862 (1689)
..++++|+||+|.+.+ .....+..+ +.......|++++|||+++ ..+++
T Consensus 148 ----------------------~~v~~lViDEah~ll~~~~~~~i~~i-------l~~l~~~~q~l~~SAT~~~~~~~l~ 198 (456)
T PRK10590 148 ----------------------DQVEILVLDEADRMLDMGFIHDIRRV-------LAKLPAKRQNLLFSATFSDDIKALA 198 (456)
T ss_pred ----------------------ccceEEEeecHHHHhccccHHHHHHH-------HHhCCccCeEEEEeCCCcHHHHHHH
Confidence 0188999999999876 333333333 2345667899999999995 67788
Q ss_pred HHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhh
Q psy14582 863 TLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMC 942 (1689)
Q Consensus 863 ~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~ 942 (1689)
.++..++.. +...........+.+.+..++...... +...+.......++||||+++..+..++..|...+
T Consensus 199 ~~~~~~~~~-i~~~~~~~~~~~i~~~~~~~~~~~k~~--------~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g 269 (456)
T PRK10590 199 EKLLHNPLE-IEVARRNTASEQVTQHVHFVDKKRKRE--------LLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG 269 (456)
T ss_pred HHHcCCCeE-EEEecccccccceeEEEEEcCHHHHHH--------HHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCC
Confidence 777765532 222222233334566665554433221 12223333445789999999999999998886521
Q ss_pred hhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCC
Q psy14582 943 LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 943 ~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp 1022 (1689)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|
T Consensus 270 -------------------------------------~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip 312 (456)
T PRK10590 270 -------------------------------------IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIE 312 (456)
T ss_pred -------------------------------------CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcc
Confidence 2355679999999999999999999999999999999999999
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
+|++| | .+++|. ++.+|+||+|||||.| ..|.+
T Consensus 313 ~v~~V-----------------I-------~~~~P~---------------------~~~~yvqR~GRaGR~g--~~G~a 345 (456)
T PRK10590 313 ELPHV-----------------V-------NYELPN---------------------VPEDYVHRIGRTGRAA--ATGEA 345 (456)
T ss_pred cCCEE-----------------E-------EeCCCC---------------------CHHHhhhhccccccCC--CCeeE
Confidence 99999 3 344443 4889999999999998 78999
Q ss_pred EEEecCCcHHHHH
Q psy14582 1103 VLITNHSELQYYL 1115 (1689)
Q Consensus 1103 iil~~~~~~~~y~ 1115 (1689)
++++...+...+.
T Consensus 346 i~l~~~~d~~~~~ 358 (456)
T PRK10590 346 LSLVCVDEHKLLR 358 (456)
T ss_pred EEEecHHHHHHHH
Confidence 9998877655443
No 23
>KOG0948|consensus
Probab=100.00 E-value=1.6e-39 Score=388.59 Aligned_cols=279 Identities=29% Similarity=0.419 Sum_probs=209.5
Q ss_pred hhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
|.++|+||+|.+-| +||.+||..+- .++.++|.|+||||+||+.++|+|+..-....+.+.-.+|||.||++
T Consensus 236 VaWVIFDEIHYMRDkERGVVWEETII-------llP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQH 308 (1041)
T KOG0948|consen 236 VAWVIFDEIHYMRDKERGVVWEETII-------LLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQH 308 (1041)
T ss_pred eeeEEeeeehhccccccceeeeeeEE-------eccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCccee
Confidence 89999999999999 89999987543 35889999999999999999999987655555666668899999988
Q ss_pred EEEe---------echh------hHHHHHHHhhH---------------------------HHHHHHHHHh--CCCeEEE
Q psy14582 888 QYIG---------VTEK------KALKRFQVMND---------------------------IVYEKVMEHA--GRNQLLV 923 (1689)
Q Consensus 888 ~~~~---------~~~~------~~~~~~~~m~~---------------------------~~~~~i~~~~--~~~~vLV 923 (1689)
++.. ++++ +..+.+..+.. -+|..+.... ...||||
T Consensus 309 yifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIv 388 (1041)
T KOG0948|consen 309 YIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIV 388 (1041)
T ss_pred eeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEE
Confidence 7542 2222 11111211100 2233222222 3469999
Q ss_pred EeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhcc--------chhhhcccCCceeEeccCCCHHHHH
Q psy14582 924 FVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVK--------NGELRDLLPYGFAIHHAGMTRVDRT 995 (1689)
Q Consensus 924 Fv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~--------~~~L~~~l~~Gi~~hHagl~~~dR~ 995 (1689)
|+-||++|+..|..+.......+.-...+ .++....+..+. -+.+..+|..|||+||+||-+--++
T Consensus 389 FSFSkkeCE~~Alqm~kldfN~deEk~~V------~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE 462 (1041)
T KOG0948|consen 389 FSFSKKECEAYALQMSKLDFNTDEEKELV------ETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKE 462 (1041)
T ss_pred EEecHhHHHHHHHhhccCcCCChhHHHHH------HHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHH
Confidence 99999999999999887654432221111 112222222222 1345678899999999999999999
Q ss_pred HHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCc
Q psy14582 996 LVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGR 1075 (1689)
Q Consensus 996 ~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~ 1075 (1689)
.||-+|.+|.++|| +||.|+++|+|+||.+|++.....||+...|
T Consensus 463 ~IEILFqEGLvKvL-----------------------------------FATETFsiGLNMPAkTVvFT~~rKfDG~~fR 507 (1041)
T KOG0948|consen 463 VIEILFQEGLVKVL-----------------------------------FATETFSIGLNMPAKTVVFTAVRKFDGKKFR 507 (1041)
T ss_pred HHHHHHhccHHHHH-----------------------------------HhhhhhhhccCCcceeEEEeeccccCCccee
Confidence 99999999999999 9999999999999999999999999999999
Q ss_pred ceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc-HHHHHHHhh-CcCCcccccccccccchh
Q psy14582 1076 WVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE-LQYYLSLLN-HQLPVESQMISKLPDMLN 1137 (1689)
Q Consensus 1076 ~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~-~~~y~~ll~-~~~pieS~l~~~l~d~ln 1137 (1689)
|+ |.-+|+||.|||||.|.|..|.+|++....- .+..+.++. ..-|+.|.|+-...-.||
T Consensus 508 wi--ssGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLN 569 (1041)
T KOG0948|consen 508 WI--SSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILN 569 (1041)
T ss_pred ee--cccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHH
Confidence 85 6679999999999999999999999998753 344555665 456888888755444444
No 24
>KOG0333|consensus
Probab=100.00 E-value=5.6e-38 Score=364.92 Aligned_cols=387 Identities=19% Similarity=0.268 Sum_probs=269.4
Q ss_pred CCchhhccCCCceEecCCCCCCCCCCCCCccCCCCccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCCh
Q psy14582 433 DGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGK 510 (1689)
Q Consensus 433 ~g~~~~~~~~yeev~vp~~~~~p~~~~~~l~~~~~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGK 510 (1689)
++.+|.-...|....-...-|.|..+.+.. .+|..+..++. ||+.|+|||.+|+|..+ .++|+|+.|.|||||
T Consensus 221 ~rdwri~redynis~kg~~lpnplrnwEE~----~~P~e~l~~I~~~~y~eptpIqR~aipl~l-Q~rD~igvaETgsGk 295 (673)
T KOG0333|consen 221 ERDWRIFREDYNISIKGGRLPNPLRNWEES----GFPLELLSVIKKPGYKEPTPIQRQAIPLGL-QNRDPIGVAETGSGK 295 (673)
T ss_pred CccceeeecceeeeecCCCCCccccChhhc----CCCHHHHHHHHhcCCCCCchHHHhhccchh-ccCCeeeEEeccCCc
Confidence 344455444554443333345566665554 58887777775 99999999999999887 789999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCC-CCCCCCeEEEEEccchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccC
Q psy14582 511 TNVALLCMLQEIGKHINADG-TINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQED 589 (1689)
Q Consensus 511 T~a~lLpiL~~l~~~~~~~g-~~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~ 589 (1689)
|++|++|++-.|.+.+.-.. .-...|+++++++|||+||+||..+-.+-. ++-.
T Consensus 296 taaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~-------------------------~~lg 350 (673)
T KOG0333|consen 296 TAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFG-------------------------KPLG 350 (673)
T ss_pred cccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhc-------------------------cccc
Confidence 99999999999987653211 123468999999999999999985543311 0111
Q ss_pred ceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEe
Q psy14582 590 VRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVST 669 (1689)
Q Consensus 590 ~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~T 669 (1689)
+|++.+-+. .....+- .+..-.+.|+|+|
T Consensus 351 ~r~vsvigg-----------------------------------------~s~EEq~----------fqls~gceiviat 379 (673)
T KOG0333|consen 351 IRTVSVIGG-----------------------------------------LSFEEQG----------FQLSMGCEIVIAT 379 (673)
T ss_pred ceEEEEecc-----------------------------------------cchhhhh----------hhhhccceeeecC
Confidence 222222111 1111110 0111278999999
Q ss_pred eeeeeeccCCccccccccCCCcceeEEEEeCCCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccc
Q psy14582 670 LRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIG 749 (1689)
Q Consensus 670 l~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~ 749 (1689)
|+ ...+...
T Consensus 380 --------Pg-rLid~Le-------------------------------------------------------------- 388 (673)
T KOG0333|consen 380 --------PG-RLIDSLE-------------------------------------------------------------- 388 (673)
T ss_pred --------ch-HHHHHHH--------------------------------------------------------------
Confidence 99 3322221
Q ss_pred cccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHH
Q psy14582 750 AETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVL 828 (1689)
Q Consensus 750 ~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~l 828 (1689)
.|-|+...+..+|+||++.+.| ..-+-+
T Consensus 389 ---------------------------------------------------nr~lvl~qctyvvldeadrmiDmgfE~dv 417 (673)
T KOG0333|consen 389 ---------------------------------------------------NRYLVLNQCTYVVLDEADRMIDMGFEPDV 417 (673)
T ss_pred ---------------------------------------------------HHHHHhccCceEeccchhhhhcccccHHH
Confidence 1223333388999999998877 555555
Q ss_pred HHHHHHHH------------------HHHHhccccceEEEEecCCC-CHHHHHHHhhcCCCccEEEecCCCcccc-eEEE
Q psy14582 829 EALIARTI------------------RNIEATQEDVRLVGLSATLP-NYKDVATLLRIKPETGLFYFDNSFRPVA-LEQQ 888 (1689)
Q Consensus 829 E~iv~r~~------------------~~~~~~~~~~riV~lSATl~-n~~dva~~L~~~~~~~~~~f~~~~Rpvp-L~~~ 888 (1689)
..+++.|- ........-.+.+.||||+| .++.+|.-....|. .......-+|.| ++|.
T Consensus 418 ~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv--~vtig~~gk~~~rveQ~ 495 (673)
T KOG0333|consen 418 QKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV--VVTIGSAGKPTPRVEQK 495 (673)
T ss_pred HHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe--EEEeccCCCCccchheE
Confidence 55544331 11111112267899999999 46777776555553 445566667777 6777
Q ss_pred EEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhh
Q psy14582 889 YIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQ 968 (1689)
Q Consensus 889 ~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~ 968 (1689)
++.++.....+++. .+++.....|+|||||+++.|..+|+.|...+..
T Consensus 496 v~m~~ed~k~kkL~--------eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~------------------------ 543 (673)
T KOG0333|consen 496 VEMVSEDEKRKKLI--------EILESNFDPPIIIFVNTKKGADALAKILEKAGYK------------------------ 543 (673)
T ss_pred EEEecchHHHHHHH--------HHHHhCCCCCEEEEEechhhHHHHHHHHhhccce------------------------
Confidence 77777665543322 2233334679999999999999999999875443
Q ss_pred ccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcc
Q psy14582 969 VKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTA 1048 (1689)
Q Consensus 969 ~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~ 1048 (1689)
+..+|||-++.+|..+++.|++|...||||||+++||||||+|++|
T Consensus 544 -------------~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlV--------------------- 589 (673)
T KOG0333|consen 544 -------------VTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLV--------------------- 589 (673)
T ss_pred -------------EEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCcccee---------------------
Confidence 4455999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHH
Q psy14582 1049 TLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLS 1116 (1689)
Q Consensus 1049 TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 1116 (1689)
.++|++.+ +.||+||+||+||+| ..|.++.|.+..+-..|..
T Consensus 590 ---inydmaks---------------------ieDYtHRIGRTgRAG--k~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 590 ---INYDMAKS---------------------IEDYTHRIGRTGRAG--KSGTAISFLTPADTAVFYD 631 (673)
T ss_pred ---eecchhhh---------------------HHHHHHHhccccccc--cCceeEEEeccchhHHHHH
Confidence 45555544 899999999999999 8999999999887664443
No 25
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.3e-37 Score=391.97 Aligned_cols=341 Identities=21% Similarity=0.331 Sum_probs=243.2
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|++.+..++. ||++|||+|.+|+|.++ .|+|+|++||||||||++|++|+++.+... ....+++|++|
T Consensus 10 ~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l-~g~dvi~~a~TGsGKT~a~~lpil~~l~~~--------~~~~~~lil~P 80 (460)
T PRK11776 10 PLPPALLANLNELGYTEMTPIQAQSLPAIL-AGKDVIAQAKTGSGKTAAFGLGLLQKLDVK--------RFRVQALVLCP 80 (460)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHhhhc--------cCCceEEEEeC
Confidence 57888888886 99999999999999988 799999999999999999999999988532 12458999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
||+||.|+...+..-. ......++..+.+..+...++..+
T Consensus 81 treLa~Q~~~~~~~~~------------------------~~~~~~~v~~~~Gg~~~~~~~~~l---------------- 120 (460)
T PRK11776 81 TRELADQVAKEIRRLA------------------------RFIPNIKVLTLCGGVPMGPQIDSL---------------- 120 (460)
T ss_pred CHHHHHHHHHHHHHHH------------------------hhCCCcEEEEEECCCChHHHHHHh----------------
Confidence 9999999986553211 001122333332222211111111
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
...++|+|+| |+ .|.....
T Consensus 121 -----------------------------------~~~~~IvV~T--------p~-rl~~~l~----------------- 139 (460)
T PRK11776 121 -----------------------------------EHGAHIIVGT--------PG-RILDHLR----------------- 139 (460)
T ss_pred -----------------------------------cCCCCEEEEC--------hH-HHHHHHH-----------------
Confidence 1267999999 99 4443322
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
.+ .-.
T Consensus 140 ---------------------------------------------------------~~--~~~---------------- 144 (460)
T PRK11776 140 ---------------------------------------------------------KG--TLD---------------- 144 (460)
T ss_pred ---------------------------------------------------------cC--Ccc----------------
Confidence 00 000
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYKDVA 862 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~dva 862 (1689)
...++++|+||+|.+.+ .....++.++. ..+...|++++|||+| ....++
T Consensus 145 ---------------------l~~l~~lViDEad~~l~~g~~~~l~~i~~-------~~~~~~q~ll~SAT~~~~~~~l~ 196 (460)
T PRK11776 145 ---------------------LDALNTLVLDEADRMLDMGFQDAIDAIIR-------QAPARRQTLLFSATYPEGIAAIS 196 (460)
T ss_pred ---------------------HHHCCEEEEECHHHHhCcCcHHHHHHHHH-------hCCcccEEEEEEecCcHHHHHHH
Confidence 01189999999998876 45555555443 3467789999999999 456666
Q ss_pred HHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhh
Q psy14582 863 TLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMC 942 (1689)
Q Consensus 863 ~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~ 942 (1689)
..+...+.. +..........+++.++.+....+.. .+ ..++......++||||+|++.|..++..|...+
T Consensus 197 ~~~~~~~~~--i~~~~~~~~~~i~~~~~~~~~~~k~~---~l-----~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~ 266 (460)
T PRK11776 197 QRFQRDPVE--VKVESTHDLPAIEQRFYEVSPDERLP---AL-----QRLLLHHQPESCVVFCNTKKECQEVADALNAQG 266 (460)
T ss_pred HHhcCCCEE--EEECcCCCCCCeeEEEEEeCcHHHHH---HH-----HHHHHhcCCCceEEEECCHHHHHHHHHHHHhCC
Confidence 665554432 33333333445777777766544222 21 122334456789999999999999999887532
Q ss_pred hhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCC
Q psy14582 943 LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 943 ~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp 1022 (1689)
..+..+||+|++.+|..+++.|++|.++|||||++++||+|+|
T Consensus 267 -------------------------------------~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~ 309 (460)
T PRK11776 267 -------------------------------------FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIK 309 (460)
T ss_pred -------------------------------------CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchh
Confidence 3466779999999999999999999999999999999999999
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
++++| | .+++| .++.+|+||+|||||.| ..|.+
T Consensus 310 ~v~~V-----------------I-------~~d~p---------------------~~~~~yiqR~GRtGR~g--~~G~a 342 (460)
T PRK11776 310 ALEAV-----------------I-------NYELA---------------------RDPEVHVHRIGRTGRAG--SKGLA 342 (460)
T ss_pred cCCeE-----------------E-------EecCC---------------------CCHhHhhhhcccccCCC--CcceE
Confidence 99999 3 33344 34889999999999998 78999
Q ss_pred EEEecCCcHHHH
Q psy14582 1103 VLITNHSELQYY 1114 (1689)
Q Consensus 1103 iil~~~~~~~~y 1114 (1689)
+.++...+...+
T Consensus 343 i~l~~~~e~~~~ 354 (460)
T PRK11776 343 LSLVAPEEMQRA 354 (460)
T ss_pred EEEEchhHHHHH
Confidence 999988765543
No 26
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=4.8e-37 Score=390.08 Aligned_cols=454 Identities=20% Similarity=0.247 Sum_probs=304.0
Q ss_pred CCCccHHHHHhcc-CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEc
Q psy14582 465 IDKLPRYVQHAFE-DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVA 543 (1689)
Q Consensus 465 ~~~Lp~~~~~~f~-g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~la 543 (1689)
+..||+++++.|. .|++|||.|.+|+|.+. +|+|+|++||||||||+||.||++..|.... +....++..+|||+
T Consensus 5 ~~~l~~~v~~~~~~~~~~~t~~Q~~a~~~i~-~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---~~~~~~~i~~lYIs 80 (814)
T COG1201 5 FNILDPRVREWFKRKFTSLTPPQRYAIPEIH-SGENVLIIAPTGSGKTEAAFLPVINELLSLG---KGKLEDGIYALYIS 80 (814)
T ss_pred hhhcCHHHHHHHHHhcCCCCHHHHHHHHHHh-CCCceEEEcCCCCChHHHHHHHHHHHHHhcc---CCCCCCceEEEEeC
Confidence 5678999999997 89999999999999998 8999999999999999999999999998752 12234679999999
Q ss_pred cchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCC
Q psy14582 544 PMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNS 623 (1689)
Q Consensus 544 PtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~ 623 (1689)
|.|||.+++..++.. |++. .|+.+ .
T Consensus 81 PLkALn~Di~~rL~~-------------------------------------------------~~~~---~G~~v---~ 105 (814)
T COG1201 81 PLKALNNDIRRRLEE-------------------------------------------------PLRE---LGIEV---A 105 (814)
T ss_pred cHHHHHHHHHHHHHH-------------------------------------------------HHHH---cCCcc---c
Confidence 999999999855522 1110 11111 0
Q ss_pred CccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCC
Q psy14582 624 FRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSE 703 (1689)
Q Consensus 624 ~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~ 703 (1689)
.|. -. ..+-.+++.. ...++|+++| |+ ..-....
T Consensus 106 vRh---------GD-T~~~er~r~~-----------~~PPdILiTT--------PE-sL~lll~---------------- 139 (814)
T COG1201 106 VRH---------GD-TPQSEKQKML-----------KNPPHILITT--------PE-SLAILLN---------------- 139 (814)
T ss_pred eec---------CC-CChHHhhhcc-----------CCCCcEEEeC--------hh-HHHHHhc----------------
Confidence 000 00 1111111111 2267899999 99 2221111
Q ss_pred cccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccc
Q psy14582 704 VVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHIN 783 (1689)
Q Consensus 704 ~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~ 783 (1689)
+. |...++ ..
T Consensus 140 -----------------------------------------------------------~~-~~r~~l-------~~--- 149 (814)
T COG1201 140 -----------------------------------------------------------SP-KFRELL-------RD--- 149 (814)
T ss_pred -----------------------------------------------------------CH-HHHHHh-------cC---
Confidence 10 111111 11
Q ss_pred cCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHH
Q psy14582 784 ADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVA 862 (1689)
Q Consensus 784 ~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva 862 (1689)
++++|+||+|-+.+ .||..+...+.|+.+. ..+.|.||||||+.+.++++
T Consensus 150 -------------------------vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l----~~~~qRIGLSATV~~~~~va 200 (814)
T COG1201 150 -------------------------VRYVIVDEIHALAESKRGVQLALSLERLREL----AGDFQRIGLSATVGPPEEVA 200 (814)
T ss_pred -------------------------CcEEEeehhhhhhccccchhhhhhHHHHHhh----CcccEEEeehhccCCHHHHH
Confidence 99999999999976 8999999999997653 22889999999999999999
Q ss_pred HHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhh
Q psy14582 863 TLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMC 942 (1689)
Q Consensus 863 ~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~ 942 (1689)
+||..........-...-++..+....-.............+...+++.+.+ .+.+|||+|||..|+.++..|....
T Consensus 201 rfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~ 277 (814)
T COG1201 201 KFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLG 277 (814)
T ss_pred HHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhc
Confidence 9999875221222222223322322211111111111112223334443333 3479999999999999999987632
Q ss_pred hhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCC
Q psy14582 943 LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 943 ~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp 1022 (1689)
...++.|||.+++..|..+|+.|++|.++++|||+.++.|||++
T Consensus 278 ------------------------------------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 278 ------------------------------------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred ------------------------------------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 14689999999999999999999999999999999999999999
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
+|++| | .|.+ |.++..++||+||||+.- +...++
T Consensus 322 ~vdlV-----------------I----------------------q~~S------P~sV~r~lQRiGRsgHr~-~~~Skg 355 (814)
T COG1201 322 DIDLV-----------------I----------------------QLGS------PKSVNRFLQRIGRAGHRL-GEVSKG 355 (814)
T ss_pred CceEE-----------------E----------------------EeCC------cHHHHHHhHhcccccccc-CCcccE
Confidence 99999 3 2322 346899999999999854 567889
Q ss_pred EEEecCCcHHHHHH------Hhh---CcCCcccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCC
Q psy14582 1103 VLITNHSELQYYLS------LLN---HQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGI 1173 (1689)
Q Consensus 1103 iil~~~~~~~~y~~------ll~---~~~pieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~ 1173 (1689)
++++.+. .+.... .+. +..++.-+-...|..++++.+... --+..++.+.+..+|-|+.+
T Consensus 356 ~ii~~~r-~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~~L--------- 424 (814)
T COG1201 356 IIIAEDR-DDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYADL--------- 424 (814)
T ss_pred EEEecCH-HHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhccccccC---------
Confidence 9998872 222221 222 123344444455667777766666 67888999999999988543
Q ss_pred CcccccCChhhhhhhHHHHHHHHHHHHH--cCCceeccCCCceeeccccccceecccchhhH
Q psy14582 1174 SHDALKEDPLLECHRADLIHTAALHLER--SGLIKYDRKSGHMQVTELGRIASHYYCTHETM 1233 (1689)
Q Consensus 1174 ~~~~~~~d~~l~~~~~~lv~~al~~L~~--~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~ 1233 (1689)
+. +-....++.|.. .+.+....+.. -....-.....+||.+..|+
T Consensus 425 ~~--------------e~f~~v~~~l~~~~~~~~~i~~~~~-~~~~~~~~~~~~y~~n~~tI 471 (814)
T COG1201 425 SR--------------EDFRLVLRYLAGEKNVYAKIWLDED-GLFGRGKGTRMIYYMNYGTI 471 (814)
T ss_pred CH--------------HHHHHHHHHHhhcccceeEEeecCc-ceeccCccceeeeeeccccc
Confidence 11 224556777776 66666543322 12233334456666666665
No 27
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-37 Score=387.78 Aligned_cols=352 Identities=16% Similarity=0.178 Sum_probs=232.4
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+|++++.+++. ||+.|||+|.+++|.++ +|+|++++||||||||++|++|+++.+.......+ ....++++||++|
T Consensus 14 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~il-~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~-~~~~~~~~lil~P 91 (423)
T PRK04837 14 ALHPQVVEALEKKGFHNCTPIQALALPLTL-AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPED-RKVNQPRALIMAP 91 (423)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccc-cccCCceEEEECC
Confidence 58899888886 99999999999999998 89999999999999999999999999875432211 1124579999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
||+||.|++..+..-. .....++..+.+..+
T Consensus 92 treLa~Qi~~~~~~l~-------------------------~~~~~~v~~~~gg~~------------------------ 122 (423)
T PRK04837 92 TRELAVQIHADAEPLA-------------------------QATGLKLGLAYGGDG------------------------ 122 (423)
T ss_pred cHHHHHHHHHHHHHHh-------------------------ccCCceEEEEECCCC------------------------
Confidence 9999999985442211 000112111111100
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
.......+ ...++|+|+| |+..++....+
T Consensus 123 ---------------~~~~~~~l------------~~~~~IlV~T--------P~~l~~~l~~~---------------- 151 (423)
T PRK04837 123 ---------------YDKQLKVL------------ESGVDILIGT--------TGRLIDYAKQN---------------- 151 (423)
T ss_pred ---------------HHHHHHHh------------cCCCCEEEEC--------HHHHHHHHHcC----------------
Confidence 00000000 1257899999 98332222110
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
... +
T Consensus 152 -------------------------------------------------------------~~~---------l------ 155 (423)
T PRK04837 152 -------------------------------------------------------------HIN---------L------ 155 (423)
T ss_pred -------------------------------------------------------------Ccc---------c------
Confidence 000 0
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCC-HHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN-YKDVA 862 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dva 862 (1689)
..++++|+||+|.+.+ .....++.++.++ ......+.+++|||++. ..+++
T Consensus 156 ----------------------~~v~~lViDEad~l~~~~f~~~i~~i~~~~-----~~~~~~~~~l~SAT~~~~~~~~~ 208 (423)
T PRK04837 156 ----------------------GAIQVVVLDEADRMFDLGFIKDIRWLFRRM-----PPANQRLNMLFSATLSYRVRELA 208 (423)
T ss_pred ----------------------ccccEEEEecHHHHhhcccHHHHHHHHHhC-----CCccceeEEEEeccCCHHHHHHH
Confidence 0188999999998876 4444444443221 11124567899999993 44444
Q ss_pred HHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhh
Q psy14582 863 TLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMC 942 (1689)
Q Consensus 863 ~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~ 942 (1689)
......+.. +...........+.+.+.......+ ... +. .++......++||||+++..|+.++..|...
T Consensus 209 ~~~~~~p~~-i~v~~~~~~~~~i~~~~~~~~~~~k---~~~----l~-~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~- 278 (423)
T PRK04837 209 FEHMNNPEY-VEVEPEQKTGHRIKEELFYPSNEEK---MRL----LQ-TLIEEEWPDRAIIFANTKHRCEEIWGHLAAD- 278 (423)
T ss_pred HHHCCCCEE-EEEcCCCcCCCceeEEEEeCCHHHH---HHH----HH-HHHHhcCCCeEEEEECCHHHHHHHHHHHHhC-
Confidence 322223221 2121122222334444443332221 111 11 2223334578999999999999999888652
Q ss_pred hhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCC
Q psy14582 943 LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 943 ~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp 1022 (1689)
...++++||+|++.+|..+++.|++|+++|||||++++||||+|
T Consensus 279 ------------------------------------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 279 ------------------------------------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIP 322 (423)
T ss_pred ------------------------------------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcc
Confidence 23467789999999999999999999999999999999999999
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
+|++| +.+++|. ++.+|+||+|||||.| ..|.+
T Consensus 323 ~v~~V------------------------I~~d~P~---------------------s~~~yiqR~GR~gR~G--~~G~a 355 (423)
T PRK04837 323 AVTHV------------------------FNYDLPD---------------------DCEDYVHRIGRTGRAG--ASGHS 355 (423)
T ss_pred ccCEE------------------------EEeCCCC---------------------chhheEeccccccCCC--CCeeE
Confidence 99999 3444443 4789999999999999 88999
Q ss_pred EEEecCCcHHHHHH
Q psy14582 1103 VLITNHSELQYYLS 1116 (1689)
Q Consensus 1103 iil~~~~~~~~y~~ 1116 (1689)
+.|..+.+...+..
T Consensus 356 i~~~~~~~~~~~~~ 369 (423)
T PRK04837 356 ISLACEEYALNLPA 369 (423)
T ss_pred EEEeCHHHHHHHHH
Confidence 99998876544443
No 28
>KOG0952|consensus
Probab=100.00 E-value=4.2e-39 Score=398.73 Aligned_cols=312 Identities=38% Similarity=0.628 Sum_probs=283.9
Q ss_pred eeeeeeccCCccccccccCCCcceeEEEEeCCCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccc
Q psy14582 670 LRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIG 749 (1689)
Q Consensus 670 l~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~ 749 (1689)
+|+++.++|+|.|+...||....+ +|++|.+...|+|++.+.+..+..++.+.+.|++|+++|||++++++..|+.|++
T Consensus 803 lri~~~~~~~f~w~~~~hg~~g~~-i~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~ 881 (1230)
T KOG0952|consen 803 LRIEVAITPDFEWNDGIHGKAGQP-IFKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLG 881 (1230)
T ss_pred heeeeccCCceEEecccccccCce-eEeecCCCCcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccC
Confidence 688889999999999999988888 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeEe----------------------------------------------------------ecCCCchHHHHH
Q psy14582 750 AETILPVSFR----------------------------------------------------------LPRGAGKTNVAL 771 (1689)
Q Consensus 750 ~e~~~pv~~~----------------------------------------------------------aPTGsGKT~~~l 771 (1689)
++...|++++ +|||+|||..+.
T Consensus 882 ~e~~~~~s~~~~il~~~~~~~t~ll~l~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae 961 (1230)
T KOG0952|consen 882 AETVYPLSFQHLILPDNEPPLTELLDLRPLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAE 961 (1230)
T ss_pred CceeccccccceeccccccccccccccCCCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHH
Confidence 9999987654 689999999999
Q ss_pred HHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHH--------------------------------------------
Q psy14582 772 LCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE-------------------------------------------- 807 (1689)
Q Consensus 772 L~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q-------------------------------------------- 807 (1689)
+++...+... ++.|++|++|.++|+.+
T Consensus 962 ~a~~~~~~~~---------p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~~v~~~~~~ittpek~d 1032 (1230)
T KOG0952|consen 962 LAIFRALSYY---------PGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVKAVREADIVITTPEKWD 1032 (1230)
T ss_pred HHHHHHhccC---------CCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChhheecCceEEccccccc
Confidence 9988876553 46899999999999876
Q ss_pred -------------HhhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEE
Q psy14582 808 -------------MVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874 (1689)
Q Consensus 808 -------------~v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~ 874 (1689)
.++++|+||+|+++++|||++|.+++|+.+...++.+.+|++++|..+.|+.|+++||+..+. +
T Consensus 1033 gi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~---~ 1109 (1230)
T KOG0952|consen 1033 GISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDM---Y 1109 (1230)
T ss_pred CccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCc---C
Confidence 178899999999999999999999999877666778899999999999999999999998764 8
Q ss_pred EecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhc
Q psy14582 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLRE 954 (1689)
Q Consensus 875 ~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~ 954 (1689)
+|.++.||+|++.++.+++....+.++..||++.+..+..+.+..|++||+.+|+++..+|..|...+........|+..
T Consensus 1110 nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~ 1189 (1230)
T KOG0952|consen 1110 NFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNM 1189 (1230)
T ss_pred CCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777777777765
Q ss_pred CchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHH
Q psy14582 955 GSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLV 997 (1689)
Q Consensus 955 ~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~v 997 (1689)
+ ...+......+++..|+-++++|+|.||+|+...||..+
T Consensus 1190 d---e~e~e~~~~~~~d~~Lk~tl~Fgi~lhhagl~~~dr~~~ 1229 (1230)
T KOG0952|consen 1190 D---ELELEIIMSKVRDTNLKLTLPFGIGLHHAGLIENDRKIV 1229 (1230)
T ss_pred C---HHHHHHHHHHhcccchhhhhhhhhhhhhhhccccccccC
Confidence 4 555666778889999999999999999999999998654
No 29
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.1e-37 Score=392.15 Aligned_cols=350 Identities=17% Similarity=0.204 Sum_probs=234.7
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+|++.+..++. ||+.|||||.++||.++ .|+|+|++||||||||++|++|+++.+....... .....+.++|||+|
T Consensus 15 ~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l-~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~-~~~~~~~raLIl~P 92 (572)
T PRK04537 15 DLHPALLAGLESAGFTRCTPIQALTLPVAL-PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA-DRKPEDPRALILAP 92 (572)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc-ccccCCceEEEEeC
Confidence 47888888886 99999999999999998 8999999999999999999999999887532110 11123579999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
|||||.|++..+.+-. ....+++..+.+...
T Consensus 93 TreLa~Qi~~~~~~l~-------------------------~~~~i~v~~l~Gg~~------------------------ 123 (572)
T PRK04537 93 TRELAIQIHKDAVKFG-------------------------ADLGLRFALVYGGVD------------------------ 123 (572)
T ss_pred cHHHHHHHHHHHHHHh-------------------------ccCCceEEEEECCCC------------------------
Confidence 9999999986543211 000112222211111
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
.... .... ...++|||+| |+..++....+
T Consensus 124 ---------------~~~q-~~~l-----------~~~~dIiV~T--------P~rL~~~l~~~---------------- 152 (572)
T PRK04537 124 ---------------YDKQ-RELL-----------QQGVDVIIAT--------PGRLIDYVKQH---------------- 152 (572)
T ss_pred ---------------HHHH-HHHH-----------hCCCCEEEEC--------HHHHHHHHHhc----------------
Confidence 0000 0001 1157899999 98322221110
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
+.+.
T Consensus 153 -------------------------------------------------------------~~~~--------------- 156 (572)
T PRK04537 153 -------------------------------------------------------------KVVS--------------- 156 (572)
T ss_pred -------------------------------------------------------------cccc---------------
Confidence 0000
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCC-HHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN-YKDVA 862 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dva 862 (1689)
...+++||+||+|.+.+ .....++.++.++. .....|++++|||+++ ..+++
T Consensus 157 ---------------------l~~v~~lViDEAh~lld~gf~~~i~~il~~lp-----~~~~~q~ll~SATl~~~v~~l~ 210 (572)
T PRK04537 157 ---------------------LHACEICVLDEADRMFDLGFIKDIRFLLRRMP-----ERGTRQTLLFSATLSHRVLELA 210 (572)
T ss_pred ---------------------hhheeeeEecCHHHHhhcchHHHHHHHHHhcc-----cccCceEEEEeCCccHHHHHHH
Confidence 00178999999998876 44445554443321 1126789999999994 44444
Q ss_pred HHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhh
Q psy14582 863 TLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMC 942 (1689)
Q Consensus 863 ~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~ 942 (1689)
......+.. +...........+.+.+.......+.. . +..++....+.++||||+|+..|+.++..|...
T Consensus 211 ~~~l~~p~~-i~v~~~~~~~~~i~q~~~~~~~~~k~~---~-----L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~- 280 (572)
T PRK04537 211 YEHMNEPEK-LVVETETITAARVRQRIYFPADEEKQT---L-----LLGLLSRSEGARTMVFVNTKAFVERVARTLERH- 280 (572)
T ss_pred HHHhcCCcE-EEeccccccccceeEEEEecCHHHHHH---H-----HHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc-
Confidence 333333322 222222233334555555443322211 1 112233345679999999999999999988652
Q ss_pred hhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCC
Q psy14582 943 LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 943 ~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp 1022 (1689)
.+.++.+|++|++.+|..+++.|++|.++|||||+++++|||+|
T Consensus 281 ------------------------------------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 281 ------------------------------------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred ------------------------------------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 13477889999999999999999999999999999999999999
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
+|++| .++++| .++.+|+||+|||||.| ..|.+
T Consensus 325 ~V~~V------------------------Inyd~P---------------------~s~~~yvqRiGRaGR~G--~~G~a 357 (572)
T PRK04537 325 GVKYV------------------------YNYDLP---------------------FDAEDYVHRIGRTARLG--EEGDA 357 (572)
T ss_pred CCCEE------------------------EEcCCC---------------------CCHHHHhhhhcccccCC--CCceE
Confidence 99999 344444 45889999999999998 78999
Q ss_pred EEEecCCcHHH
Q psy14582 1103 VLITNHSELQY 1113 (1689)
Q Consensus 1103 iil~~~~~~~~ 1113 (1689)
++|+...+...
T Consensus 358 i~~~~~~~~~~ 368 (572)
T PRK04537 358 ISFACERYAMS 368 (572)
T ss_pred EEEecHHHHHH
Confidence 99998765443
No 30
>KOG0340|consensus
Probab=100.00 E-value=8.7e-37 Score=341.51 Aligned_cols=347 Identities=16% Similarity=0.245 Sum_probs=250.3
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+|.+|+.+-++ |+++|||||..++|.+| .|+|+|.||.||||||.+|.||||+.+..++ .+..++++.|
T Consensus 13 Gl~~Wlve~l~~l~i~~pTpiQ~~cIpkIL-eGrdcig~AkTGsGKT~AFaLPil~rLsedP--------~giFalvlTP 83 (442)
T KOG0340|consen 13 GLSPWLVEQLKALGIKKPTPIQQACIPKIL-EGRDCIGCAKTGSGKTAAFALPILNRLSEDP--------YGIFALVLTP 83 (442)
T ss_pred CccHHHHHHHHHhcCCCCCchHhhhhHHHh-cccccccccccCCCcchhhhHHHHHhhccCC--------CcceEEEecc
Confidence 78999998887 99999999999999999 8999999999999999999999999998753 5578999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
||+||-|+.+.|..-- .+...++..
T Consensus 84 TrELA~QiaEQF~alG-------------------------k~l~lK~~v------------------------------ 108 (442)
T KOG0340|consen 84 TRELALQIAEQFIALG-------------------------KLLNLKVSV------------------------------ 108 (442)
T ss_pred hHHHHHHHHHHHHHhc-------------------------ccccceEEE------------------------------
Confidence 9999999987662200 000011111
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
++|. ...+.+... ...+++++|+| |+ +..+...
T Consensus 109 --------ivGG--~d~i~qa~~-----------L~~rPHvVvat--------PG-Rlad~l~----------------- 141 (442)
T KOG0340|consen 109 --------IVGG--TDMIMQAAI-----------LSDRPHVVVAT--------PG-RLADHLS----------------- 141 (442)
T ss_pred --------EEcc--HHHhhhhhh-----------cccCCCeEecC--------cc-ccccccc-----------------
Confidence 1111 111111111 12389999999 99 5544443
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
|+|-+..+.
T Consensus 142 ----------------------------------------------------------sn~~~~~~~------------- 150 (442)
T KOG0340|consen 142 ----------------------------------------------------------SNLGVCSWI------------- 150 (442)
T ss_pred ----------------------------------------------------------cCCccchhh-------------
Confidence 222222211
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT 863 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~ 863 (1689)
.+.++.+|+||++.+.+ .....++.+.+ ..+...|.++||||+. +.+..
T Consensus 151 ---------------------~~rlkflVlDEADrvL~~~f~d~L~~i~e-------~lP~~RQtLlfSATit--d~i~q 200 (442)
T KOG0340|consen 151 ---------------------FQRLKFLVLDEADRVLAGCFPDILEGIEE-------CLPKPRQTLLFSATIT--DTIKQ 200 (442)
T ss_pred ---------------------hhceeeEEecchhhhhccchhhHHhhhhc-------cCCCccceEEEEeehh--hHHHH
Confidence 11288999999998876 56666666543 4566679999999998 33445
Q ss_pred HhhcCCCccEEEecCCCc----ccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHh--CCCeEEEEeCChHHHHHHHHH
Q psy14582 864 LLRIKPETGLFYFDNSFR----PVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHA--GRNQLLVFVHSRKETGKTARA 937 (1689)
Q Consensus 864 ~L~~~~~~~~~~f~~~~R----pvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~--~~~~vLVFv~srk~~~~~a~~ 937 (1689)
..++.-..+..++....- +-.|.+.|+.++...... .+|..+.... ..+.++|||++.++|+.++..
T Consensus 201 l~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda-------YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~ 273 (442)
T KOG0340|consen 201 LFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA-------YLVHLLRDFENKENGSIMIFVNTTRECQLLSMT 273 (442)
T ss_pred hhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH-------HHHHHHhhhhhccCceEEEEeehhHHHHHHHHH
Confidence 555543332333333322 234778888777644321 2232232222 367899999999999999998
Q ss_pred HHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhcc
Q psy14582 938 IRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAW 1017 (1689)
Q Consensus 938 L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~r 1017 (1689)
|...... ++..|+-|++.+|...+..|+++.++||||||+++|
T Consensus 274 l~~le~r-------------------------------------~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsR 316 (442)
T KOG0340|consen 274 LKNLEVR-------------------------------------VVSLHSQMPQKERLAALSRFRSNAARILIATDVASR 316 (442)
T ss_pred Hhhhcee-------------------------------------eeehhhcchHHHHHHHHHHHhhcCccEEEEechhhc
Confidence 8764433 333499999999999999999999999999999999
Q ss_pred CCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCC
Q psy14582 1018 GVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYD 1097 (1689)
Q Consensus 1018 GIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d 1097 (1689)
|+|||.|.+| ++.|+|.. |.+|+||+||+.|+|
T Consensus 317 GLDIP~V~LV------------------------vN~diPr~---------------------P~~yiHRvGRtARAG-- 349 (442)
T KOG0340|consen 317 GLDIPTVELV------------------------VNHDIPRD---------------------PKDYIHRVGRTARAG-- 349 (442)
T ss_pred CCCCCceeEE------------------------EecCCCCC---------------------HHHHHHhhcchhccc--
Confidence 9999999999 68888866 899999999999999
Q ss_pred CccEEEEEecCCcHHHHHH
Q psy14582 1098 TKGEGVLITNHSELQYYLS 1116 (1689)
Q Consensus 1098 ~~G~~iil~~~~~~~~y~~ 1116 (1689)
+.|.+|-+.+..+.+....
T Consensus 350 R~G~aiSivt~rDv~l~~a 368 (442)
T KOG0340|consen 350 RKGMAISIVTQRDVELLQA 368 (442)
T ss_pred CCcceEEEechhhHHHHHH
Confidence 8999999999877655443
No 31
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.7e-37 Score=391.45 Aligned_cols=299 Identities=29% Similarity=0.367 Sum_probs=214.9
Q ss_pred hhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
+..||+||+|+++| +||.++|.++- .++..+++|+||||+||..+++.|++......+.....++||+||++
T Consensus 230 i~~ViFDEvHyi~D~eRG~VWEE~Ii-------~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~ 302 (1041)
T COG4581 230 IEWVVFDEVHYIGDRERGVVWEEVII-------LLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEH 302 (1041)
T ss_pred cceEEEEeeeeccccccchhHHHHHH-------hcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEE
Confidence 88999999999999 89999999864 35788999999999999999999999776667888889999999998
Q ss_pred EEEee-------chhhHH--HHHHHhhHHHH----------------------------------HHHHH---HhCCCeE
Q psy14582 888 QYIGV-------TEKKAL--KRFQVMNDIVY----------------------------------EKVME---HAGRNQL 921 (1689)
Q Consensus 888 ~~~~~-------~~~~~~--~~~~~m~~~~~----------------------------------~~i~~---~~~~~~v 921 (1689)
++..- +..... ..+...+..+. -.+.. ....-|+
T Consensus 303 ~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~ 382 (1041)
T COG4581 303 FVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPA 382 (1041)
T ss_pred EEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCce
Confidence 87532 221110 00000000000 00111 1224699
Q ss_pred EEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhcc---------chhhhcccCCceeEeccCCCHH
Q psy14582 922 LVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVK---------NGELRDLLPYGFAIHHAGMTRV 992 (1689)
Q Consensus 922 LVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~---------~~~L~~~l~~Gi~~hHagl~~~ 992 (1689)
|+|+-||+.|+..|..+...-......... .-..++...+..+. -..+..+|..|+|+||+||-+.
T Consensus 383 I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~-----~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~ 457 (1041)
T COG4581 383 IVFSFSRRGCEEAAQILSTLDLVLTEEKER-----AIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPA 457 (1041)
T ss_pred EEEEEchhhHHHHHHHhcccccccCCcHHH-----HHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchH
Confidence 999999999999999887432211111100 01223333333332 2345678899999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCC
Q psy14582 993 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 1072 (1689)
Q Consensus 993 dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~ 1072 (1689)
.|..||.+|..|.++|+ ++|.|++.|+|+||.+||+.+.+.||+.
T Consensus 458 ~K~~vE~Lfq~GLvkvv-----------------------------------FaTeT~s~GiNmPartvv~~~l~K~dG~ 502 (1041)
T COG4581 458 IKELVEELFQEGLVKVV-----------------------------------FATETFAIGINMPARTVVFTSLSKFDGN 502 (1041)
T ss_pred HHHHHHHHHhccceeEE-----------------------------------eehhhhhhhcCCcccceeeeeeEEecCC
Confidence 99999999999999999 9999999999999999999999999988
Q ss_pred CCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc--HHHHHHHhh-CcCCcccccccccccchhhhhhhccccChH
Q psy14582 1073 KGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE--LQYYLSLLN-HQLPVESQMISKLPDMLNAEIVLGTVQNLK 1149 (1689)
Q Consensus 1073 ~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~--~~~y~~ll~-~~~pieS~l~~~l~d~lnaeI~~g~i~~~~ 1149 (1689)
.++ .+++.+|.||.|||||.|.|..|.+|++-.... ..-...+.. .+.|+.|+|...+.-.+| +-.+...+
T Consensus 503 ~~r--~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~miln----ll~v~~l~ 576 (1041)
T COG4581 503 GHR--WLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMILN----LLRVEGLQ 576 (1041)
T ss_pred cee--ecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhHHHh----hhhhcccC
Confidence 765 489999999999999999999999999954432 333333333 556788887765443333 23334444
Q ss_pred HHHHHHhhhhh
Q psy14582 1150 DAVTWLGYTYL 1160 (1689)
Q Consensus 1150 d~~~~l~~T~~ 1160 (1689)
.+-+.+..+|.
T Consensus 577 ~~e~ll~~Sf~ 587 (1041)
T COG4581 577 TAEDLLERSFA 587 (1041)
T ss_pred cHHHHHHhhHH
Confidence 45555555554
No 32
>KOG0345|consensus
Probab=100.00 E-value=3.9e-36 Score=346.72 Aligned_cols=355 Identities=19% Similarity=0.239 Sum_probs=251.1
Q ss_pred ccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccc
Q psy14582 468 LPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545 (1689)
Q Consensus 468 Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPt 545 (1689)
|.+|+..++. ||+..||+|..++|..+ +++|+.|.||||||||+||++|++..+.+... ...+..+-+|+|+||
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll-~~KDVvveavTGSGKTlAFllP~le~i~rr~~---~~~~~~vgalIIsPT 88 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLL-KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREA---KTPPGQVGALIISPT 88 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHh-cCCceEEEcCCCCCchhhHHHHHHHHHHhhcc---CCCccceeEEEecCc
Confidence 6799999997 99999999999999988 89999999999999999999999999965322 122235789999999
Q ss_pred hhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCc
Q psy14582 546 RSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFR 625 (1689)
Q Consensus 546 reLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r 625 (1689)
||||.||.+....-.-|+ .+.-..++-++..-..+++.+
T Consensus 89 RELa~QI~~V~~~F~~~l------------------------~~l~~~l~vGG~~v~~Di~~f----------------- 127 (567)
T KOG0345|consen 89 RELARQIREVAQPFLEHL------------------------PNLNCELLVGGRSVEEDIKTF----------------- 127 (567)
T ss_pred HHHHHHHHHHHHHHHHhh------------------------hccceEEEecCccHHHHHHHH-----------------
Confidence 999999985543211110 111112222221111122222
Q ss_pred cccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCcc
Q psy14582 626 PVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVV 705 (1689)
Q Consensus 626 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~i 705 (1689)
.-. .++|+|+| |+...|...|
T Consensus 128 --------------------kee-------------~~nIlVgT--------PGRL~di~~~------------------ 148 (567)
T KOG0345|consen 128 --------------------KEE-------------GPNILVGT--------PGRLLDILQR------------------ 148 (567)
T ss_pred --------------------HHh-------------CCcEEEeC--------chhHHHHHhc------------------
Confidence 222 78899999 9944444433
Q ss_pred cchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccC
Q psy14582 706 LHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINAD 785 (1689)
Q Consensus 706 l~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~ 785 (1689)
.+.+-+
T Consensus 149 --------------------------------------------------------~~~~l~------------------ 154 (567)
T KOG0345|consen 149 --------------------------------------------------------EAEKLS------------------ 154 (567)
T ss_pred --------------------------------------------------------hhhhcc------------------
Confidence 000000
Q ss_pred CCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHHHHHH
Q psy14582 786 GTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYKDVAT 863 (1689)
Q Consensus 786 ~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~dva~ 863 (1689)
...+.++|+||++.|.| ..-..+..|+++ ++.+.|.-+||||.. ..++++.
T Consensus 155 --------------------~rsLe~LVLDEADrLldmgFe~~~n~ILs~-------LPKQRRTGLFSATq~~~v~dL~r 207 (567)
T KOG0345|consen 155 --------------------FRSLEILVLDEADRLLDMGFEASVNTILSF-------LPKQRRTGLFSATQTQEVEDLAR 207 (567)
T ss_pred --------------------ccccceEEecchHhHhcccHHHHHHHHHHh-------cccccccccccchhhHHHHHHHH
Confidence 00178999999999987 666666666554 688899999999988 4566666
Q ss_pred HhhcCCCccEEEecCC--CcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHh
Q psy14582 864 LLRIKPETGLFYFDNS--FRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDM 941 (1689)
Q Consensus 864 ~L~~~~~~~~~~f~~~--~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~ 941 (1689)
.--.++.. +-+-..+ ..|-.|..+|..+....+... ++. ++.....+++|||.+|...++.....+...
T Consensus 208 aGLRNpv~-V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~-------lv~-~L~~~~~kK~iVFF~TCasVeYf~~~~~~~ 278 (567)
T KOG0345|consen 208 AGLRNPVR-VSVKEKSKSATPSSLALEYLVCEADEKLSQ-------LVH-LLNNNKDKKCIVFFPTCASVEYFGKLFSRL 278 (567)
T ss_pred hhccCcee-eeecccccccCchhhcceeeEecHHHHHHH-------HHH-HHhccccccEEEEecCcchHHHHHHHHHHH
Confidence 54445433 1111122 245558888888876554321 222 233345689999999999998888877653
Q ss_pred hhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCC
Q psy14582 942 CLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNL 1021 (1689)
Q Consensus 942 ~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDI 1021 (1689)
.. ...+.-.||.|++..|..++..|++-.-.||+|||+++|||||
T Consensus 279 l~-----------------------------------~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDi 323 (567)
T KOG0345|consen 279 LK-----------------------------------KREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDI 323 (567)
T ss_pred hC-----------------------------------CCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCC
Confidence 11 1223344999999999999999999999999999999999999
Q ss_pred CCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1022 PAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1022 p~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
|+|++| ..|||++ .+..++||+||+||.| +.|.
T Consensus 324 p~iD~V---------------------------------------vQ~DpP~------~~~~FvHR~GRTaR~g--r~G~ 356 (567)
T KOG0345|consen 324 PGIDLV---------------------------------------VQFDPPK------DPSSFVHRCGRTARAG--REGN 356 (567)
T ss_pred CCceEE---------------------------------------EecCCCC------ChhHHHhhcchhhhcc--Cccc
Confidence 999999 3466654 3789999999999999 8999
Q ss_pred EEEEecCCcHHHHHHHhh
Q psy14582 1102 GVLITNHSELQYYLSLLN 1119 (1689)
Q Consensus 1102 ~iil~~~~~~~~y~~ll~ 1119 (1689)
+++|..+. ...|..||.
T Consensus 357 Aivfl~p~-E~aYveFl~ 373 (567)
T KOG0345|consen 357 AIVFLNPR-EEAYVEFLR 373 (567)
T ss_pred eEEEeccc-HHHHHHHHH
Confidence 99999984 455666665
No 33
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.7e-36 Score=376.51 Aligned_cols=347 Identities=20% Similarity=0.254 Sum_probs=238.4
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+|++.+++++. ||.+||++|.+++|.++ .|+|+|++||||||||++|++|+++.+...... ...+.++||++|
T Consensus 7 ~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~lil~P 81 (434)
T PRK11192 7 ELDESLLEALQDKGYTRPTAIQAEAIPPAL-DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR----KSGPPRILILTP 81 (434)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhhcccc----CCCCceEEEECC
Confidence 57888888886 99999999999999999 799999999999999999999999998754221 113469999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
|++||.|+++.+..-. ......+..+.+....
T Consensus 82 t~eLa~Q~~~~~~~l~-------------------------~~~~~~v~~~~gg~~~----------------------- 113 (434)
T PRK11192 82 TRELAMQVADQARELA-------------------------KHTHLDIATITGGVAY----------------------- 113 (434)
T ss_pred cHHHHHHHHHHHHHHH-------------------------ccCCcEEEEEECCCCH-----------------------
Confidence 9999999985542211 0001112222111110
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
. ..... ..+.++|+|+| |+...+...++
T Consensus 114 --------------~---~~~~~-----------l~~~~~IlV~T--------p~rl~~~~~~~---------------- 141 (434)
T PRK11192 114 --------------M---NHAEV-----------FSENQDIVVAT--------PGRLLQYIKEE---------------- 141 (434)
T ss_pred --------------H---HHHHH-----------hcCCCCEEEEC--------hHHHHHHHHcC----------------
Confidence 0 00000 01267899999 98222211110
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
. +.
T Consensus 142 -----------------------------------------------------------~---~~--------------- 144 (434)
T PRK11192 142 -----------------------------------------------------------N---FD--------------- 144 (434)
T ss_pred -----------------------------------------------------------C---cC---------------
Confidence 0 00
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCC--HHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN--YKDV 861 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dv 861 (1689)
...++++|+||+|.+.+ ..+..++.+... .....|+++||||++. ..++
T Consensus 145 ---------------------~~~v~~lViDEah~~l~~~~~~~~~~i~~~-------~~~~~q~~~~SAT~~~~~~~~~ 196 (434)
T PRK11192 145 ---------------------CRAVETLILDEADRMLDMGFAQDIETIAAE-------TRWRKQTLLFSATLEGDAVQDF 196 (434)
T ss_pred ---------------------cccCCEEEEECHHHHhCCCcHHHHHHHHHh-------CccccEEEEEEeecCHHHHHHH
Confidence 00188999999999887 556666555432 3456789999999973 6788
Q ss_pred HHHhhcCCCccEEEecCCCcc-cceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHH
Q psy14582 862 ATLLRIKPETGLFYFDNSFRP-VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRD 940 (1689)
Q Consensus 862 a~~L~~~~~~~~~~f~~~~Rp-vpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~ 940 (1689)
+.++...+.. +......+. ..+.+.+...+.... .. . ++..+.+.....++||||+++..+..++..|..
T Consensus 197 ~~~~~~~~~~--i~~~~~~~~~~~i~~~~~~~~~~~~--k~----~-~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~ 267 (434)
T PRK11192 197 AERLLNDPVE--VEAEPSRRERKKIHQWYYRADDLEH--KT----A-LLCHLLKQPEVTRSIVFVRTRERVHELAGWLRK 267 (434)
T ss_pred HHHHccCCEE--EEecCCcccccCceEEEEEeCCHHH--HH----H-HHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHh
Confidence 8888765432 222222221 224444444432111 11 1 122233333457899999999999999998865
Q ss_pred hhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCC
Q psy14582 941 MCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVN 1020 (1689)
Q Consensus 941 ~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGID 1020 (1689)
.+ ..+.++||+|++.+|..+++.|++|.++|||||+++++|+|
T Consensus 268 ~~-------------------------------------~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiD 310 (434)
T PRK11192 268 AG-------------------------------------INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGID 310 (434)
T ss_pred CC-------------------------------------CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCcc
Confidence 21 23667899999999999999999999999999999999999
Q ss_pred CCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1021 LPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1021 Ip~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
+|+|++| | ++++| .+..+|+||+|||||.| ..|
T Consensus 311 ip~v~~V-----------------I-------~~d~p---------------------~s~~~yiqr~GR~gR~g--~~g 343 (434)
T PRK11192 311 IDDVSHV-----------------I-------NFDMP---------------------RSADTYLHRIGRTGRAG--RKG 343 (434)
T ss_pred CCCCCEE-----------------E-------EECCC---------------------CCHHHHhhcccccccCC--CCc
Confidence 9999999 3 33333 45889999999999998 789
Q ss_pred EEEEEecCCcHHHHHH
Q psy14582 1101 EGVLITNHSELQYYLS 1116 (1689)
Q Consensus 1101 ~~iil~~~~~~~~y~~ 1116 (1689)
.++++....+...+.+
T Consensus 344 ~ai~l~~~~d~~~~~~ 359 (434)
T PRK11192 344 TAISLVEAHDHLLLGK 359 (434)
T ss_pred eEEEEecHHHHHHHHH
Confidence 9999998766544443
No 34
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=9.4e-36 Score=382.33 Aligned_cols=343 Identities=20% Similarity=0.264 Sum_probs=235.0
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|++.+.+++. ||.+|||+|.+++|.++ .|+|+|++||||||||+||++|++..+... ..+.++||++|
T Consensus 12 ~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll-~g~dvl~~ApTGsGKT~af~lpll~~l~~~--------~~~~~~LIL~P 82 (629)
T PRK11634 12 GLKAPILEALNDLGYEKPSPIQAECIPHLL-NGRDVLGMAQTGSGKTAAFSLPLLHNLDPE--------LKAPQILVLAP 82 (629)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHHHHHHHHHHHHhhhc--------cCCCeEEEEeC
Confidence 47888888886 99999999999999988 799999999999999999999999987532 13468999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
||+||.|+...+.+-. .......++.+....+
T Consensus 83 TreLa~Qv~~~l~~~~------------------------~~~~~i~v~~~~gG~~------------------------ 114 (629)
T PRK11634 83 TRELAVQVAEAMTDFS------------------------KHMRGVNVVALYGGQR------------------------ 114 (629)
T ss_pred cHHHHHHHHHHHHHHH------------------------hhcCCceEEEEECCcC------------------------
Confidence 9999999985542210 0001111111111000
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
... ++ ......++|||+| |+..++...++
T Consensus 115 -----------------~~~-q~---------~~l~~~~~IVVgT--------Pgrl~d~l~r~---------------- 143 (629)
T PRK11634 115 -----------------YDV-QL---------RALRQGPQIVVGT--------PGRLLDHLKRG---------------- 143 (629)
T ss_pred -----------------HHH-HH---------HHhcCCCCEEEEC--------HHHHHHHHHcC----------------
Confidence 000 00 0011268999999 98222222110
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
++.
T Consensus 144 --------------------------------------------------------------~l~--------------- 146 (629)
T PRK11634 144 --------------------------------------------------------------TLD--------------- 146 (629)
T ss_pred --------------------------------------------------------------Ccc---------------
Confidence 000
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCC-HHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN-YKDVA 862 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dva 862 (1689)
...+++||+||+|.+.+ .....++.++. ..+...|+++||||+|. ...++
T Consensus 147 ---------------------l~~l~~lVlDEAd~ml~~gf~~di~~Il~-------~lp~~~q~llfSAT~p~~i~~i~ 198 (629)
T PRK11634 147 ---------------------LSKLSGLVLDEADEMLRMGFIEDVETIMA-------QIPEGHQTALFSATMPEAIRRIT 198 (629)
T ss_pred ---------------------hhhceEEEeccHHHHhhcccHHHHHHHHH-------hCCCCCeEEEEEccCChhHHHHH
Confidence 00188999999998765 44444444433 35678899999999994 56666
Q ss_pred HHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhh
Q psy14582 863 TLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMC 942 (1689)
Q Consensus 863 ~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~ 942 (1689)
..+..++.. +...........+.+.++.+....+.. .+ ..++......++||||+|+..|..++..|...+
T Consensus 199 ~~~l~~~~~-i~i~~~~~~~~~i~q~~~~v~~~~k~~---~L-----~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g 269 (629)
T PRK11634 199 RRFMKEPQE-VRIQSSVTTRPDISQSYWTVWGMRKNE---AL-----VRFLEAEDFDAAIIFVRTKNATLEVAEALERNG 269 (629)
T ss_pred HHHcCCCeE-EEccCccccCCceEEEEEEechhhHHH---HH-----HHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCC
Confidence 655554432 222222222224556665554332221 11 122233345789999999999999999887532
Q ss_pred hhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCC
Q psy14582 943 LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 943 ~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp 1022 (1689)
+.+..+|++|++.+|..+++.|++|+++|||||+++++|||+|
T Consensus 270 -------------------------------------~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip 312 (629)
T PRK11634 270 -------------------------------------YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVE 312 (629)
T ss_pred -------------------------------------CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcc
Confidence 2345669999999999999999999999999999999999999
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
+|++| | .+++| .++.+|+||+|||||.| ..|.+
T Consensus 313 ~V~~V-----------------I-------~~d~P---------------------~~~e~yvqRiGRtGRaG--r~G~a 345 (629)
T PRK11634 313 RISLV-----------------V-------NYDIP---------------------MDSESYVHRIGRTGRAG--RAGRA 345 (629)
T ss_pred cCCEE-----------------E-------EeCCC---------------------CCHHHHHHHhccccCCC--CcceE
Confidence 99999 3 34444 35889999999999998 78999
Q ss_pred EEEecCCcHHHHH
Q psy14582 1103 VLITNHSELQYYL 1115 (1689)
Q Consensus 1103 iil~~~~~~~~y~ 1115 (1689)
++++.+.+...+.
T Consensus 346 i~~v~~~e~~~l~ 358 (629)
T PRK11634 346 LLFVENRERRLLR 358 (629)
T ss_pred EEEechHHHHHHH
Confidence 9999876654443
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.9e-35 Score=378.01 Aligned_cols=213 Identities=21% Similarity=0.278 Sum_probs=151.8
Q ss_pred hhccccCCceeecC---CchhHHHHHHHHHHHHHHhccccceEEEEecCCCC--HHHHHHHhhcCCCccEEEecCCCccc
Q psy14582 809 VGNFGKDEIHLLHD---ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN--YKDVATLLRIKPETGLFYFDNSFRPV 883 (1689)
Q Consensus 809 v~liIiDEiHll~d---~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dva~~L~~~~~~~~~~f~~~~Rpv 883 (1689)
+.+|||||+|++.+ +..+.+..+ ..+....+.+++++||||++. .+++...|+... ...|..++...
T Consensus 582 LslIVIDEAHcVSqWGhDFRpdYr~L-----~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~---~~vfr~Sf~Rp 653 (1195)
T PLN03137 582 LARFVIDEAHCVSQWGHDFRPDYQGL-----GILKQKFPNIPVLALTATATASVKEDVVQALGLVN---CVVFRQSFNRP 653 (1195)
T ss_pred cceeccCcchhhhhcccchHHHHHHH-----HHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCC---cEEeecccCcc
Confidence 78899999999864 122222211 112233567899999999983 567888887543 23444444333
Q ss_pred ceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHH
Q psy14582 884 ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLR 963 (1689)
Q Consensus 884 pL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~ 963 (1689)
++...+. ..... ... .+...+.....+.+.||||.||++|+.++..|...+
T Consensus 654 NL~y~Vv--~k~kk--~le----~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~G--------------------- 704 (1195)
T PLN03137 654 NLWYSVV--PKTKK--CLE----DIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFG--------------------- 704 (1195)
T ss_pred ceEEEEe--ccchh--HHH----HHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCC---------------------
Confidence 4433322 22111 111 122222223335679999999999999999887532
Q ss_pred HhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceE
Q psy14582 964 TEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQV 1043 (1689)
Q Consensus 964 ~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~v 1043 (1689)
..+++|||||++.+|..+++.|..|.++|||||+++++|||+|+|++|
T Consensus 705 ----------------ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~V---------------- 752 (1195)
T PLN03137 705 ----------------HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFV---------------- 752 (1195)
T ss_pred ----------------CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEE----------------
Confidence 346778999999999999999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCc
Q psy14582 1044 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQ 1121 (1689)
Q Consensus 1044 LVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~ 1121 (1689)
+.+++| .++.+|+||+|||||.| ..|.|+++.+..+...+..++...
T Consensus 753 --------IHydlP---------------------kSiEsYyQriGRAGRDG--~~g~cILlys~~D~~~~~~lI~~~ 799 (1195)
T PLN03137 753 --------IHHSLP---------------------KSIEGYHQECGRAGRDG--QRSSCVLYYSYSDYIRVKHMISQG 799 (1195)
T ss_pred --------EEcCCC---------------------CCHHHHHhhhcccCCCC--CCceEEEEecHHHHHHHHHHHhcc
Confidence 344444 35899999999999999 789999999888877777777543
No 36
>KOG0342|consensus
Probab=100.00 E-value=5.7e-36 Score=348.34 Aligned_cols=355 Identities=23% Similarity=0.289 Sum_probs=251.3
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|.+...+++. ||.++|++|++++|.++ .|+|+|+.|.||||||+||++|+++.+...+.. ...+..+++++|
T Consensus 88 ~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll-~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~----~r~~~~vlIi~P 162 (543)
T KOG0342|consen 88 SLSPLTLKAIKEMGFETMTPVQQKTIPPLL-EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFK----PRNGTGVLIICP 162 (543)
T ss_pred ccCHHHHHHHHhcCccchhHHHHhhcCccC-CCccceeeeccCCCceeeehhHHHHHHHhcccC----CCCCeeEEEecc
Confidence 56788888886 99999999999999999 799999999999999999999999999875332 337889999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhC-CCCCceeecCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIK-PETGLFYFDNS 623 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~-~~~~~~~~~~~ 623 (1689)
||+||.|++.+.++ ++..+ ..+.
T Consensus 163 TRELA~Q~~~eak~-------------------------------------------------Ll~~h~~~~v------- 186 (543)
T KOG0342|consen 163 TRELAMQIFAEAKE-------------------------------------------------LLKYHESITV------- 186 (543)
T ss_pred cHHHHHHHHHHHHH-------------------------------------------------HHhhCCCcce-------
Confidence 99999999965533 22111 0011
Q ss_pred CccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCC
Q psy14582 624 FRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSE 703 (1689)
Q Consensus 624 ~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~ 703 (1689)
+.++|-. ......+++ ...++|+|+| |+ ++.+.+..
T Consensus 187 -------~~viGG~-~~~~e~~kl------------~k~~niliAT--------PG-RLlDHlqN--------------- 222 (543)
T KOG0342|consen 187 -------GIVIGGN-NFSVEADKL------------VKGCNILIAT--------PG-RLLDHLQN--------------- 222 (543)
T ss_pred -------EEEeCCc-cchHHHHHh------------hccccEEEeC--------Cc-hHHhHhhc---------------
Confidence 1111111 011111111 1278999999 99 44443331
Q ss_pred cccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccc
Q psy14582 704 VVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHIN 783 (1689)
Q Consensus 704 ~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~ 783 (1689)
| +|..+.
T Consensus 223 ----------------------------------------------------------t-~~f~~r-------------- 229 (543)
T KOG0342|consen 223 ----------------------------------------------------------T-SGFLFR-------------- 229 (543)
T ss_pred ----------------------------------------------------------C-Ccchhh--------------
Confidence 1 121111
Q ss_pred cCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHHHH
Q psy14582 784 ADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYKDV 861 (1689)
Q Consensus 784 ~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~dv 861 (1689)
.++++|+||++.+.+ .+..-++.| +..++...|.++||||.+ ..+++
T Consensus 230 ------------------------~~k~lvlDEADrlLd~GF~~di~~I-------i~~lpk~rqt~LFSAT~~~kV~~l 278 (543)
T KOG0342|consen 230 ------------------------NLKCLVLDEADRLLDIGFEEDVEQI-------IKILPKQRQTLLFSATQPSKVKDL 278 (543)
T ss_pred ------------------------ccceeEeecchhhhhcccHHHHHHH-------HHhccccceeeEeeCCCcHHHHHH
Confidence 167899999998886 444333433 345678899999999999 57777
Q ss_pred HHHhhcCCCccEEE-ecCCCcc---cceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q psy14582 862 ATLLRIKPETGLFY-FDNSFRP---VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARA 937 (1689)
Q Consensus 862 a~~L~~~~~~~~~~-f~~~~Rp---vpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~ 937 (1689)
+.-.... .. +|. .+..-.+ ..++|.|+..+.... + ..+|..+.++....++||||+|...+...+..
T Consensus 279 ~~~~L~~-d~-~~v~~~d~~~~~The~l~Qgyvv~~~~~~---f----~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~l 349 (543)
T KOG0342|consen 279 ARGALKR-DP-VFVNVDDGGERETHERLEQGYVVAPSDSR---F----SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAEL 349 (543)
T ss_pred HHHhhcC-Cc-eEeecCCCCCcchhhcccceEEeccccch---H----HHHHHHHHHhcCCceEEEEechhhHHHHHHHH
Confidence 7755443 12 332 2222222 236676666654433 2 23556666666668999999999999999988
Q ss_pred HHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhcc
Q psy14582 938 IRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAW 1017 (1689)
Q Consensus 938 L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~r 1017 (1689)
|........ -.||++++..|..+...|++.+--|||||||++|
T Consensus 350 L~~~dlpv~-------------------------------------eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaAR 392 (543)
T KOG0342|consen 350 LNYIDLPVL-------------------------------------EIHGKQKQNKRTSTFFEFCKAESGILVCTDVAAR 392 (543)
T ss_pred HhhcCCchh-------------------------------------hhhcCCcccccchHHHHHhhcccceEEecchhhc
Confidence 875332222 2299999999999999999999999999999999
Q ss_pred CCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCC
Q psy14582 1018 GVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYD 1097 (1689)
Q Consensus 1018 GIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d 1097 (1689)
|+|+|+|++| | .||++. .+.+|+||+||+||.|
T Consensus 393 GlD~P~V~~V-----------------v----------------------Q~~~P~------d~~~YIHRvGRTaR~g-- 425 (543)
T KOG0342|consen 393 GLDIPDVDWV-----------------V----------------------QYDPPS------DPEQYIHRVGRTAREG-- 425 (543)
T ss_pred cCCCCCceEE-----------------E----------------------EeCCCC------CHHHHHHHhccccccC--
Confidence 9999999999 2 344432 3899999999999988
Q ss_pred CccEEEEEecCCcHHHHHHHhhCcCCcc
Q psy14582 1098 TKGEGVLITNHSELQYYLSLLNHQLPVE 1125 (1689)
Q Consensus 1098 ~~G~~iil~~~~~~~~y~~ll~~~~pie 1125 (1689)
..|+++++..+.++.+...+- .+|++
T Consensus 426 k~G~alL~l~p~El~Flr~LK--~lpl~ 451 (543)
T KOG0342|consen 426 KEGKALLLLAPWELGFLRYLK--KLPLE 451 (543)
T ss_pred CCceEEEEeChhHHHHHHHHh--hCCCc
Confidence 899999999998876655443 45553
No 37
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-35 Score=373.23 Aligned_cols=345 Identities=20% Similarity=0.292 Sum_probs=231.1
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|++.+++++. ||.+||++|.++++.++ .|+|+|++||||||||++|++|++..+......... ...+.++|||+|
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~-~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~-~~~~~~aLil~P 170 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTL-AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKER-YMGEPRALIIAP 170 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhcCccccc-ccCCceEEEEeC
Confidence 58899988886 99999999999999888 899999999999999999999999998764321110 112469999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
||+||.|+...+..-. . .....+..+.+....
T Consensus 171 treLa~Q~~~~~~~l~-----------------------~--~~~~~v~~~~gg~~~----------------------- 202 (475)
T PRK01297 171 TRELVVQIAKDAAALT-----------------------K--YTGLNVMTFVGGMDF----------------------- 202 (475)
T ss_pred cHHHHHHHHHHHHHhh-----------------------c--cCCCEEEEEEccCCh-----------------------
Confidence 9999999985542210 0 001111111111000
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
.... .++. ...++|+|+| |+ ++-....
T Consensus 203 --------------~~~~--~~~~-----------~~~~~Iiv~T--------P~-~Ll~~~~----------------- 229 (475)
T PRK01297 203 --------------DKQL--KQLE-----------ARFCDILVAT--------PG-RLLDFNQ----------------- 229 (475)
T ss_pred --------------HHHH--HHHh-----------CCCCCEEEEC--------HH-HHHHHHH-----------------
Confidence 1100 1111 1267899999 98 3211111
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
+| ... +
T Consensus 230 -----------------------------------------~~------------------~~~--l------------- 235 (475)
T PRK01297 230 -----------------------------------------RG------------------EVH--L------------- 235 (475)
T ss_pred -----------------------------------------cC------------------Ccc--c-------------
Confidence 00 000 0
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhc--cccceEEEEecCCC-CHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEAT--QEDVRLVGLSATLP-NYKD 860 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~--~~~~riV~lSATl~-n~~d 860 (1689)
..++++||||+|.+.+ ...+.+..++ ... ....+++++|||++ +..+
T Consensus 236 ----------------------~~l~~lViDEah~l~~~~~~~~l~~i~-------~~~~~~~~~q~i~~SAT~~~~~~~ 286 (475)
T PRK01297 236 ----------------------DMVEVMVLDEADRMLDMGFIPQVRQII-------RQTPRKEERQTLLFSATFTDDVMN 286 (475)
T ss_pred ----------------------ccCceEEechHHHHHhcccHHHHHHHH-------HhCCCCCCceEEEEEeecCHHHHH
Confidence 0188999999998876 3333333322 222 23568999999988 5666
Q ss_pred HHHHhhcCCCccEEEecC-CCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHH
Q psy14582 861 VATLLRIKPETGLFYFDN-SFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIR 939 (1689)
Q Consensus 861 va~~L~~~~~~~~~~f~~-~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~ 939 (1689)
++..+...+. .+.+.. ......+.+++..+....... .++. ++......++||||++++.|+.++..|.
T Consensus 287 ~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~k~~-------~l~~-ll~~~~~~~~IVF~~s~~~~~~l~~~L~ 356 (475)
T PRK01297 287 LAKQWTTDPA--IVEIEPENVASDTVEQHVYAVAGSDKYK-------LLYN-LVTQNPWERVMVFANRKDEVRRIEERLV 356 (475)
T ss_pred HHHHhccCCE--EEEeccCcCCCCcccEEEEEecchhHHH-------HHHH-HHHhcCCCeEEEEeCCHHHHHHHHHHHH
Confidence 6665554432 222222 222223556665554433221 1222 2233345799999999999999988775
Q ss_pred HhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCC
Q psy14582 940 DMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGV 1019 (1689)
Q Consensus 940 ~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGI 1019 (1689)
..+ ..+..+||+|++.+|..+++.|++|.++|||||+++++||
T Consensus 357 ~~~-------------------------------------~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GI 399 (475)
T PRK01297 357 KDG-------------------------------------INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGI 399 (475)
T ss_pred HcC-------------------------------------CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCC
Confidence 421 2356679999999999999999999999999999999999
Q ss_pred CCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCc
Q psy14582 1020 NLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTK 1099 (1689)
Q Consensus 1020 DIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~ 1099 (1689)
|||++++| | .+++| .++.+|+||+|||||.| ..
T Consensus 400 Di~~v~~V-----------------I-------~~~~P---------------------~s~~~y~Qr~GRaGR~g--~~ 432 (475)
T PRK01297 400 HIDGISHV-----------------I-------NFTLP---------------------EDPDDYVHRIGRTGRAG--AS 432 (475)
T ss_pred cccCCCEE-----------------E-------EeCCC---------------------CCHHHHHHhhCccCCCC--CC
Confidence 99999999 3 23333 35899999999999998 78
Q ss_pred cEEEEEecCCcH
Q psy14582 1100 GEGVLITNHSEL 1111 (1689)
Q Consensus 1100 G~~iil~~~~~~ 1111 (1689)
|.++++.+.++.
T Consensus 433 g~~i~~~~~~d~ 444 (475)
T PRK01297 433 GVSISFAGEDDA 444 (475)
T ss_pred ceEEEEecHHHH
Confidence 999999987643
No 38
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.4e-35 Score=368.11 Aligned_cols=210 Identities=19% Similarity=0.332 Sum_probs=145.1
Q ss_pred hhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccceE
Q psy14582 809 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVALE 886 (1689)
Q Consensus 809 v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~RpvpL~ 886 (1689)
++++|+||+|.+.+ ..+..+..+ +....+..|++++|||+|+ ..++...+...+.. +...........+.
T Consensus 171 i~lvViDEah~~~~~~~~~~~~~i-------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 242 (401)
T PTZ00424 171 LKLFILDEADEMLSRGFKGQIYDV-------FKKLPPDVQVALFSATMPNEILELTTKFMRDPKR-ILVKKDELTLEGIR 242 (401)
T ss_pred ccEEEEecHHHHHhcchHHHHHHH-------HhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEE-EEeCCCCcccCCce
Confidence 88999999998875 333222222 2345678999999999995 33333333322221 22212222223344
Q ss_pred EEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhh
Q psy14582 887 QQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEA 966 (1689)
Q Consensus 887 ~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~ 966 (1689)
+.+..+..... .... ...+.+.....++||||+|++.+..++..|...
T Consensus 243 ~~~~~~~~~~~--~~~~-----l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~------------------------- 290 (401)
T PTZ00424 243 QFYVAVEKEEW--KFDT-----LCDLYETLTITQAIIYCNTRRKVDYLTKKMHER------------------------- 290 (401)
T ss_pred EEEEecChHHH--HHHH-----HHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC-------------------------
Confidence 55554432211 1111 112223344578999999999999988877541
Q ss_pred hhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEE
Q psy14582 967 DQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVS 1046 (1689)
Q Consensus 967 ~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVa 1046 (1689)
..+++.+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++| |
T Consensus 291 ------------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~V-----------------I- 340 (401)
T PTZ00424 291 ------------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLV-----------------I- 340 (401)
T ss_pred ------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEE-----------------E-
Confidence 2357888999999999999999999999999999999999999999998 3
Q ss_pred cccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHH
Q psy14582 1047 TATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSL 1117 (1689)
Q Consensus 1047 T~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 1117 (1689)
. ||. +.+..+|+||+|||||.| ..|.|++++++++...+.++
T Consensus 341 ------~---------------~~~------p~s~~~y~qr~GRagR~g--~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 341 ------N---------------YDL------PASPENYIHRIGRSGRFG--RKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred ------E---------------ECC------CCCHHHEeecccccccCC--CCceEEEEEcHHHHHHHHHH
Confidence 1 332 246889999999999988 78999999998877766653
No 39
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=9.1e-35 Score=390.27 Aligned_cols=296 Identities=15% Similarity=0.194 Sum_probs=184.2
Q ss_pred hhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
+++|||||+|.+.+ .||..++..+.|+.+. ...+.|+|+||||++|.+++++||+......+ +..+..++.+++.
T Consensus 125 Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l---~~~~~QrIgLSATI~n~eevA~~L~g~~pv~I-v~~~~~r~~~l~v 200 (1490)
T PRK09751 125 VETVIIDEVHAVAGSKRGAHLALSLERLDAL---LHTSAQRIGLSATVRSASDVAAFLGGDRPVTV-VNPPAMRHPQIRI 200 (1490)
T ss_pred CCEEEEecHHHhcccccccHHHHHHHHHHHh---CCCCCeEEEEEeeCCCHHHHHHHhcCCCCEEE-ECCCCCcccceEE
Confidence 89999999999987 6999999999998654 34678999999999999999999986432223 2244556666654
Q ss_pred EEEeechhhH------------HHHHHHhhHHHHHHHHH-HhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhc
Q psy14582 888 QYIGVTEKKA------------LKRFQVMNDIVYEKVME-HAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLRE 954 (1689)
Q Consensus 888 ~~~~~~~~~~------------~~~~~~m~~~~~~~i~~-~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~ 954 (1689)
.+...+.... ..+...+...++..+.. ....+++|||||||+.|+.++..|.+...+....
T Consensus 201 ~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~------ 274 (1490)
T PRK09751 201 VVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQR------ 274 (1490)
T ss_pred EEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccc------
Confidence 3321111000 00011111122222222 2346789999999999999999998643211000
Q ss_pred CchhHHHHHHhhhhccchhhh---cccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhh
Q psy14582 955 GSASMEVLRTEADQVKNGELR---DLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTL 1031 (1689)
Q Consensus 955 ~~~~~e~l~~~~~~~~~~~L~---~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~ 1031 (1689)
... ............+.... ..-...+.+|||+|++++|..+|+.|++|.+++||||+++++||||++|++|
T Consensus 275 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlV---- 349 (1490)
T PRK09751 275 SPS-IAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLV---- 349 (1490)
T ss_pred ccc-ccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEE----
Confidence 000 00000000011111111 1112346899999999999999999999999999999999999999998888
Q ss_pred HHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcH
Q psy14582 1032 VEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL 1111 (1689)
Q Consensus 1032 ~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~ 1111 (1689)
| . |+. +.++.+|+||+|||||. .+..+.++++..+..
T Consensus 350 -------------I-------q---------------~gs------P~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~- 386 (1490)
T PRK09751 350 -------------I-------Q---------------VAT------PLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRR- 386 (1490)
T ss_pred -------------E-------E---------------eCC------CCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHH-
Confidence 3 1 221 45799999999999997 356678887666532
Q ss_pred HH------HHHHhhCc-CCccc--ccccccccchhhhhhhccccChHHHHHHHhhhhhhhh
Q psy14582 1112 QY------YLSLLNHQ-LPVES--QMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIR 1163 (1689)
Q Consensus 1112 ~~------y~~ll~~~-~pieS--~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~R 1163 (1689)
+. ...++... .|+.. +-...|..|+.+-++.+.+ +.++..+.+..+|-|+.
T Consensus 387 dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~-~~d~l~~~vrra~pf~~ 446 (1490)
T PRK09751 387 DLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDAL-QVDEWYSRVRRAAPWKD 446 (1490)
T ss_pred HHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCC-CHHHHHHHhhccCCccc
Confidence 21 11222221 12211 1112345566665554433 46777777877777753
No 40
>KOG0343|consensus
Probab=100.00 E-value=5e-35 Score=341.29 Aligned_cols=357 Identities=23% Similarity=0.267 Sum_probs=262.9
Q ss_pred cHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccch
Q psy14582 469 PRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR 546 (1689)
Q Consensus 469 p~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtr 546 (1689)
.....+.++ +|..+|.||+.+||.+| .|+|+|+.|.||||||+||++|+|..|.+.... ..+|..+|+|+|||
T Consensus 77 s~~t~kgLke~~fv~~teiQ~~~Ip~aL-~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs----~~DGlGalIISPTR 151 (758)
T KOG0343|consen 77 SQKTLKGLKEAKFVKMTEIQRDTIPMAL-QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWS----PTDGLGALIISPTR 151 (758)
T ss_pred chHHHHhHhhcCCccHHHHHHhhcchhc-cCcccccccccCCCceeeehHHHHHHHHHcCCC----CCCCceeEEecchH
Confidence 355666665 89999999999999999 899999999999999999999999999987554 34789999999999
Q ss_pred hhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCcc
Q psy14582 547 SLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRP 626 (1689)
Q Consensus 547 eLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r~ 626 (1689)
|||.|+++.+++--. ...|||.+.
T Consensus 152 ELA~QtFevL~kvgk------------------------------~h~fSaGLi-------------------------- 175 (758)
T KOG0343|consen 152 ELALQTFEVLNKVGK------------------------------HHDFSAGLI-------------------------- 175 (758)
T ss_pred HHHHHHHHHHHHHhh------------------------------cccccccee--------------------------
Confidence 999999977755211 112333322
Q ss_pred ccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCccc
Q psy14582 627 VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVL 706 (1689)
Q Consensus 627 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~il 706 (1689)
+|-. +-...+..+. ...|+||| |+ +.
T Consensus 176 -------iGG~-~~k~E~eRi~-------------~mNILVCT--------PG-RL------------------------ 201 (758)
T KOG0343|consen 176 -------IGGK-DVKFELERIS-------------QMNILVCT--------PG-RL------------------------ 201 (758)
T ss_pred -------ecCc-hhHHHHHhhh-------------cCCeEEec--------hH-HH------------------------
Confidence 1111 1222333333 78999999 99 21
Q ss_pred chhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCC
Q psy14582 707 HHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADG 786 (1689)
Q Consensus 707 ~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~ 786 (1689)
|+++....+-..
T Consensus 202 --------------------------------------------------------------------LQHmde~~~f~t 213 (758)
T KOG0343|consen 202 --------------------------------------------------------------------LQHMDENPNFST 213 (758)
T ss_pred --------------------------------------------------------------------HHHhhhcCCCCC
Confidence 111111000000
Q ss_pred CcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHHHHHHH
Q psy14582 787 TINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYKDVATL 864 (1689)
Q Consensus 787 ~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~dva~~ 864 (1689)
. .+.++|+||++.+.| .+..+++.|+. .++...|.++||||-. +..|+|+.
T Consensus 214 ----~----------------~lQmLvLDEADR~LDMGFk~tL~~Ii~-------~lP~~RQTLLFSATqt~svkdLaRL 266 (758)
T KOG0343|consen 214 ----S----------------NLQMLVLDEADRMLDMGFKKTLNAIIE-------NLPKKRQTLLFSATQTKSVKDLARL 266 (758)
T ss_pred ----C----------------cceEEEeccHHHHHHHhHHHHHHHHHH-------hCChhheeeeeecccchhHHHHHHh
Confidence 0 077899999998777 56666666654 5688899999999988 67888887
Q ss_pred hhcCCCccEEE-ecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhh
Q psy14582 865 LRIKPETGLFY-FDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCL 943 (1689)
Q Consensus 865 L~~~~~~~~~~-f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~ 943 (1689)
--.+|...-++ -...-.|..|+|.|+.++...+.. .+|..|.. ....+.|||++|.+++..++..++.+..
T Consensus 267 sL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~-------~L~sFI~s-hlk~K~iVF~SscKqvkf~~e~F~rlrp 338 (758)
T KOG0343|consen 267 SLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID-------MLWSFIKS-HLKKKSIVFLSSCKQVKFLYEAFCRLRP 338 (758)
T ss_pred hcCCCcEEEEeccccccChhhhhheEEEEehhhHHH-------HHHHHHHh-ccccceEEEEehhhHHHHHHHHHHhcCC
Confidence 55555431111 122345778999999988776654 34444433 3457899999999999999988876432
Q ss_pred hccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCC
Q psy14582 944 EKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPA 1023 (1689)
Q Consensus 944 ~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~ 1023 (1689)
.. .+...||+|++..|..|...|-...--||+||++++||+|+|.
T Consensus 339 g~-----------------------------------~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpa 383 (758)
T KOG0343|consen 339 GI-----------------------------------PLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPA 383 (758)
T ss_pred CC-----------------------------------ceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcc
Confidence 11 1234599999999999999999999999999999999999999
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEE
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGV 1103 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~i 1103 (1689)
|++| .-|+.|+. +.+|+||+||++|.+ ..|+++
T Consensus 384 VdwV------------------------iQ~DCPed---------------------v~tYIHRvGRtAR~~--~~G~sl 416 (758)
T KOG0343|consen 384 VDWV------------------------IQVDCPED---------------------VDTYIHRVGRTARYK--ERGESL 416 (758)
T ss_pred cceE------------------------EEecCchh---------------------HHHHHHHhhhhhccc--CCCceE
Confidence 9999 34555555 889999999999965 899999
Q ss_pred EEecCCcHHHHHHHhhCc-CCcc
Q psy14582 1104 LITNHSELQYYLSLLNHQ-LPVE 1125 (1689)
Q Consensus 1104 il~~~~~~~~y~~ll~~~-~pie 1125 (1689)
++..+++.+.+...|... .|++
T Consensus 417 l~L~psEeE~~l~~Lq~k~I~i~ 439 (758)
T KOG0343|consen 417 LMLTPSEEEAMLKKLQKKKIPIK 439 (758)
T ss_pred EEEcchhHHHHHHHHHHcCCCHH
Confidence 999999988777766644 6654
No 41
>KOG0335|consensus
Probab=100.00 E-value=3.9e-35 Score=348.72 Aligned_cols=351 Identities=18% Similarity=0.243 Sum_probs=243.9
Q ss_pred CCCccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCC--CCeEEE
Q psy14582 465 IDKLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINA--DEFKII 540 (1689)
Q Consensus 465 ~~~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~--~~~kvl 540 (1689)
...|++.+....+ +|..|||||+.++|.+. .|+++++|||||||||.||++|++..+............ ..++++
T Consensus 78 ~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~-~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~l 156 (482)
T KOG0335|consen 78 EAILGEALAGNIKRSGYTKPTPVQKYSIPIIS-GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRAL 156 (482)
T ss_pred ccchhHHHhhccccccccCCCcceeeccceee-cCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceE
Confidence 4467777777776 99999999999999887 899999999999999999999999999876432211111 248999
Q ss_pred EEccchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceee
Q psy14582 541 YVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYF 620 (1689)
Q Consensus 541 ~laPtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~ 620 (1689)
+++||||||.|++.+..+-. . ..++ ..+..+
T Consensus 157 IlapTReL~~Qi~nea~k~~---------------------------------~-----------~s~~-----~~~~~y 187 (482)
T KOG0335|consen 157 ILAPTRELVDQIYNEARKFS---------------------------------Y-----------LSGM-----KSVVVY 187 (482)
T ss_pred EEeCcHHHhhHHHHHHHhhc---------------------------------c-----------cccc-----eeeeee
Confidence 99999999999996654311 0 0000 000000
Q ss_pred cCCCccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeC
Q psy14582 621 DNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDV 700 (1689)
Q Consensus 621 ~~~~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~ 700 (1689)
+. .+ +. ......-..++|+|+| |+ +..+..+
T Consensus 188 gg----~~-------------~~----------~q~~~~~~gcdIlvaT--------pG-rL~d~~e------------- 218 (482)
T KOG0335|consen 188 GG----TD-------------LG----------AQLRFIKRGCDILVAT--------PG-RLKDLIE------------- 218 (482)
T ss_pred CC----cc-------------hh----------hhhhhhccCccEEEec--------Cc-hhhhhhh-------------
Confidence 00 00 00 0001112278999999 99 4333322
Q ss_pred CCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhh
Q psy14582 701 DSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGK 780 (1689)
Q Consensus 701 d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~ 780 (1689)
-||-
T Consensus 219 ---------------------------------------------------------------~g~i------------- 222 (482)
T KOG0335|consen 219 ---------------------------------------------------------------RGKI------------- 222 (482)
T ss_pred ---------------------------------------------------------------ccee-------------
Confidence 0110
Q ss_pred ccccCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC--CchhHHHHHHHHHHHHHHhccccceEEEEecCCC-C
Q psy14582 781 HINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD--ERGPVLEALIARTIRNIEATQEDVRLVGLSATLP-N 857 (1689)
Q Consensus 781 ~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d--~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n 857 (1689)
..+.++++|+||++.+.| .++|.+..++.+.- .......|.++||||.| +
T Consensus 223 ------------------------~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~---~~~~~~~qt~mFSAtfp~~ 275 (482)
T KOG0335|consen 223 ------------------------SLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLG---MPPKNNRQTLLFSATFPKE 275 (482)
T ss_pred ------------------------ehhhCcEEEecchHHhhhhccccccHHHHhcccC---CCCccceeEEEEeccCChh
Confidence 112288999999999998 68888887765431 01134678999999999 4
Q ss_pred HHHHHHHhhcCCCccEEEecC--CCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHh---CC-----CeEEEEeCC
Q psy14582 858 YKDVATLLRIKPETGLFYFDN--SFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHA---GR-----NQLLVFVHS 927 (1689)
Q Consensus 858 ~~dva~~L~~~~~~~~~~f~~--~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~---~~-----~~vLVFv~s 927 (1689)
...++..+..+. .++.--. .-.+..+.|.+..+....+...+ ++.+.... .. +.++|||.+
T Consensus 276 iq~l~~~fl~~~--yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~L-------ldll~~~~~~~~~~~~~~e~tlvFvEt 346 (482)
T KOG0335|consen 276 IQRLAADFLKDN--YIFLAVGRVGSTSENITQKILFVNEMEKRSKL-------LDLLNKDDGPPSDGEPKWEKTLVFVET 346 (482)
T ss_pred hhhhHHHHhhcc--ceEEEEeeeccccccceeEeeeecchhhHHHH-------HHHhhcccCCcccCCcccceEEEEeec
Confidence 444444333221 1222111 11234677777777765543322 11111111 12 379999999
Q ss_pred hHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeE
Q psy14582 928 RKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQ 1007 (1689)
Q Consensus 928 rk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~ 1007 (1689)
++.|..++..|.........+ |+..++.+|...+++|++|.+.
T Consensus 347 ~~~~d~l~~~l~~~~~~~~sI-------------------------------------hg~~tq~er~~al~~Fr~g~~p 389 (482)
T KOG0335|consen 347 KRGADELAAFLSSNGYPAKSI-------------------------------------HGDRTQIEREQALNDFRNGKAP 389 (482)
T ss_pred cchhhHHHHHHhcCCCCceee-------------------------------------cchhhhhHHHHHHHHhhcCCcc
Confidence 999999999998755544333 9999999999999999999999
Q ss_pred EEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHH
Q psy14582 1008 VLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQM 1087 (1689)
Q Consensus 1008 VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm 1087 (1689)
|||||++++||+|||+|++| .+++||+. +.+|+||
T Consensus 390 vlVaT~VaaRGlDi~~V~hV------------------------InyDmP~d---------------------~d~YvHR 424 (482)
T KOG0335|consen 390 VLVATNVAARGLDIPNVKHV------------------------INYDMPAD---------------------IDDYVHR 424 (482)
T ss_pred eEEEehhhhcCCCCCCCcee------------------------EEeecCcc---------------------hhhHHHh
Confidence 99999999999999999999 67888877 6799999
Q ss_pred hcccCCCCCCCccEEEEEecCCc
Q psy14582 1088 LGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1088 ~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
+||+||.| ..|.++.|++...
T Consensus 425 IGRTGR~G--n~G~atsf~n~~~ 445 (482)
T KOG0335|consen 425 IGRTGRVG--NGGRATSFFNEKN 445 (482)
T ss_pred ccccccCC--CCceeEEEecccc
Confidence 99999999 8999999998543
No 42
>KOG0348|consensus
Probab=100.00 E-value=1.3e-34 Score=337.34 Aligned_cols=384 Identities=21% Similarity=0.236 Sum_probs=255.6
Q ss_pred CccHHHHHhcc---CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEc
Q psy14582 467 KLPRYVQHAFE---DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVA 543 (1689)
Q Consensus 467 ~Lp~~~~~~f~---g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~la 543 (1689)
+|++.+...+. ++..||.||+++||.++ .|+|++|.|+||||||+||++|+++.|..+... -.+.+|..+++|+
T Consensus 142 GL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL-~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~k--i~Rs~G~~ALViv 218 (708)
T KOG0348|consen 142 GLHPHLVSHLNTKMKISAPTSVQKQAIPVLL-EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPK--IQRSDGPYALVIV 218 (708)
T ss_pred CCCHHHHHHHHHHhccCccchHhhcchhhhh-cCcceEEEcCCCCcccHHHHHHHHHHHHhcCcc--ccccCCceEEEEe
Confidence 67888877776 89999999999999999 699999999999999999999999999876321 2245789999999
Q ss_pred cchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCC
Q psy14582 544 PMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNS 623 (1689)
Q Consensus 544 PtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~ 623 (1689)
||||||.|+|+.+.+-. .+ --|+ .++.++++.
T Consensus 219 PTREL~~Q~y~~~qKLl---------------------------------------~~----~hWI-----VPg~lmGGE 250 (708)
T KOG0348|consen 219 PTRELALQIYETVQKLL---------------------------------------KP----FHWI-----VPGVLMGGE 250 (708)
T ss_pred chHHHHHHHHHHHHHHh---------------------------------------cC----ceEE-----eeceeeccc
Confidence 99999999996654411 00 0111 111222222
Q ss_pred CccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCC
Q psy14582 624 FRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSE 703 (1689)
Q Consensus 624 ~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~ 703 (1689)
.+. -.+.. ...+..|+|+| |+...|...+
T Consensus 251 kkK---------------SEKAR------------LRKGiNILIgT--------PGRLvDHLkn---------------- 279 (708)
T KOG0348|consen 251 KKK---------------SEKAR------------LRKGINILIGT--------PGRLVDHLKN---------------- 279 (708)
T ss_pred ccc---------------cHHHH------------HhcCceEEEcC--------chHHHHHHhc----------------
Confidence 211 11111 12378999999 9954444433
Q ss_pred cccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccc
Q psy14582 704 VVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHIN 783 (1689)
Q Consensus 704 ~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~ 783 (1689)
|
T Consensus 280 ----------------------------------------------------------T--------------------- 280 (708)
T KOG0348|consen 280 ----------------------------------------------------------T--------------------- 280 (708)
T ss_pred ----------------------------------------------------------c---------------------
Confidence 1
Q ss_pred cCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHH--HH----hccccceEEEEecCCC
Q psy14582 784 ADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRN--IE----ATQEDVRLVGLSATLP 856 (1689)
Q Consensus 784 ~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~--~~----~~~~~~riV~lSATl~ 856 (1689)
+.+..+.++++|+||++.|.+ ..+..+..|+.-.-.+ .+ ..++..+-+++||||.
T Consensus 281 ------------------~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLt 342 (708)
T KOG0348|consen 281 ------------------KSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLT 342 (708)
T ss_pred ------------------chheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhH
Confidence 011111288999999999987 6777777666543110 11 1233467889999998
Q ss_pred -CHHHHHHHhhcCCCccEEEe---------------------------cCCCcccceEEEEEeechhhHHHHHHHhhHHH
Q psy14582 857 -NYKDVATLLRIKPETGLFYF---------------------------DNSFRPVALEQQYIGVTEKKALKRFQVMNDIV 908 (1689)
Q Consensus 857 -n~~dva~~L~~~~~~~~~~f---------------------------~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~ 908 (1689)
....++..--.++ ++.- +...-|-.|.|+|..++.+-..-. +...+
T Consensus 343 d~V~rLa~~sLkDp---v~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~---Laa~L 416 (708)
T KOG0348|consen 343 DGVNRLADLSLKDP---VYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVA---LAALL 416 (708)
T ss_pred HHHHHHhhccccCc---eeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHH---HHHHH
Confidence 3444444322221 1111 112234456777777776544332 22222
Q ss_pred HHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhccc-CCceeEecc
Q psy14582 909 YEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLL-PYGFAIHHA 987 (1689)
Q Consensus 909 ~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l-~~Gi~~hHa 987 (1689)
...+ +.....++|||+++...++.-...+.........-. -.......+..++ ...+.-.||
T Consensus 417 ~~~~-k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~----------------s~~~~s~g~~~l~~~~k~~rLHG 479 (708)
T KOG0348|consen 417 LNKV-KFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGS----------------SGAPDSEGLPPLFMDLKFYRLHG 479 (708)
T ss_pred HHHh-hhhhhceeEEEEechhHHHHHHHHHHhhhhcccccc----------------cCCcccCCChhhhhcceEEEecC
Confidence 2222 223345899999999999888887776443210000 0000111122222 223556799
Q ss_pred CCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEecee
Q psy14582 988 GMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQ 1067 (1689)
Q Consensus 988 gl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~ 1067 (1689)
+|++++|..+++.|+...-.||+||||++||+|+|+|++| .
T Consensus 480 sm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~v---------------------------------------V 520 (708)
T KOG0348|consen 480 SMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLV---------------------------------------V 520 (708)
T ss_pred chhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeE---------------------------------------E
Confidence 9999999999999999999999999999999999999999 3
Q ss_pred eecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhC
Q psy14582 1068 IYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNH 1120 (1689)
Q Consensus 1068 ~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 1120 (1689)
.||++ .++.||+||+||+.|.| ..|.+++|..+.+.+ |.+.+..
T Consensus 521 QYd~P------~s~adylHRvGRTARaG--~kG~alLfL~P~Eae-y~~~l~~ 564 (708)
T KOG0348|consen 521 QYDPP------FSTADYLHRVGRTARAG--EKGEALLFLLPSEAE-YVNYLKK 564 (708)
T ss_pred EeCCC------CCHHHHHHHhhhhhhcc--CCCceEEEecccHHH-HHHHHHh
Confidence 47764 57999999999999999 899999999999888 6555543
No 43
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.2e-34 Score=357.47 Aligned_cols=215 Identities=22% Similarity=0.271 Sum_probs=150.6
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCC--HHHHHHHhhcCCCccEEEecCCCcccceE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN--YKDVATLLRIKPETGLFYFDNSFRPVALE 886 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dva~~L~~~~~~~~~~f~~~~RpvpL~ 886 (1689)
++++||||+|.+.+ .|..+.....++ ..+....+++++++||||+++ ..++..+++.... . .+..++...++.
T Consensus 128 i~~iViDEaH~i~~-~g~~fr~~~~~l-~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~--~-~~~~s~~r~nl~ 202 (470)
T TIGR00614 128 ITLIAVDEAHCISQ-WGHDFRPDYKAL-GSLKQKFPNVPIMALTATASPSVREDILRQLNLKNP--Q-IFCTSFDRPNLY 202 (470)
T ss_pred cCEEEEeCCcccCc-cccccHHHHHHH-HHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCC--c-EEeCCCCCCCcE
Confidence 89999999999874 222222222221 112233467899999999995 3678888876432 2 222333222333
Q ss_pred EEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhh
Q psy14582 887 QQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEA 966 (1689)
Q Consensus 887 ~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~ 966 (1689)
..+..... . .+ ..+...+.+...++.+||||+|++.|+.++..|...+
T Consensus 203 ~~v~~~~~-~---~~----~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g------------------------ 250 (470)
T TIGR00614 203 YEVRRKTP-K---IL----EDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG------------------------ 250 (470)
T ss_pred EEEEeCCc-c---HH----HHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC------------------------
Confidence 22222111 1 11 1122333334455677999999999999999887522
Q ss_pred hhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEE
Q psy14582 967 DQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVS 1046 (1689)
Q Consensus 967 ~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVa 1046 (1689)
..++.+||+|++.+|..+++.|++|.++|||||+++++|||+|+|++| |
T Consensus 251 -------------~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~V-----------------I- 299 (470)
T TIGR00614 251 -------------IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFV-----------------I- 299 (470)
T ss_pred -------------CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEE-----------------E-
Confidence 245678999999999999999999999999999999999999999999 3
Q ss_pred cccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhC
Q psy14582 1047 TATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNH 1120 (1689)
Q Consensus 1047 T~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 1120 (1689)
.+++| .++.+|+||+|||||.| ..|.|+++.+..+...+..++..
T Consensus 300 ------~~~~P---------------------~s~~~y~Qr~GRaGR~G--~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 300 ------HYSLP---------------------KSMESYYQESGRAGRDG--LPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred ------EeCCC---------------------CCHHHHHhhhcCcCCCC--CCceEEEEechhHHHHHHHHHhc
Confidence 33333 35899999999999998 78999999999888877776653
No 44
>KOG0326|consensus
Probab=100.00 E-value=4.2e-35 Score=322.62 Aligned_cols=334 Identities=22% Similarity=0.273 Sum_probs=249.3
Q ss_pred cHHHHHhcc-CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchh
Q psy14582 469 PRYVQHAFE-DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS 547 (1689)
Q Consensus 469 p~~~~~~f~-g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtre 547 (1689)
++.+...|+ ||+.|.|||.+++|.|+ +|+|+|+.|..|+|||.||.+|+|..+... .+...+++++||||
T Consensus 94 r~LLmgIfe~G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~~IP~Lekid~~--------~~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 94 RELLMGIFEKGFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAYCIPVLEKIDPK--------KNVIQAIILVPTRE 164 (459)
T ss_pred HHHHHHHHHhccCCCCCccccccceee-cchhhhhhccCCCCCccceechhhhhcCcc--------ccceeEEEEeecch
Confidence 677888887 99999999999999999 999999999999999999999999988643 24578999999999
Q ss_pred hhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccC--ceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCc
Q psy14582 548 LVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQED--VRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFR 625 (1689)
Q Consensus 548 La~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~--~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r 625 (1689)
||.|.-..... ..+. ++++..++.-
T Consensus 165 lALQtSqvc~~---------------------------lskh~~i~vmvttGGT-------------------------- 191 (459)
T KOG0326|consen 165 LALQTSQVCKE---------------------------LSKHLGIKVMVTTGGT-------------------------- 191 (459)
T ss_pred hhHHHHHHHHH---------------------------HhcccCeEEEEecCCc--------------------------
Confidence 99987532211 1111 2222211110
Q ss_pred cccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCcc
Q psy14582 626 PVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVV 705 (1689)
Q Consensus 626 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~i 705 (1689)
.++ +.+++.....+++|+| |+...|-...
T Consensus 192 --~lr-----------------------DDI~Rl~~~VH~~vgT--------PGRIlDL~~K------------------ 220 (459)
T KOG0326|consen 192 --SLR-----------------------DDIMRLNQTVHLVVGT--------PGRILDLAKK------------------ 220 (459)
T ss_pred --ccc-----------------------cceeeecCceEEEEcC--------ChhHHHHHhc------------------
Confidence 111 1222333377899999 9944443222
Q ss_pred cchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccC
Q psy14582 706 LHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINAD 785 (1689)
Q Consensus 706 l~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~ 785 (1689)
|-++--
T Consensus 221 ---------------------------------------------------------gVa~ls----------------- 226 (459)
T KOG0326|consen 221 ---------------------------------------------------------GVADLS----------------- 226 (459)
T ss_pred ---------------------------------------------------------ccccch-----------------
Confidence 111100
Q ss_pred CCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHHHHHH
Q psy14582 786 GTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYKDVAT 863 (1689)
Q Consensus 786 ~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~dva~ 863 (1689)
.+..+|+||++.|.+ +.++.+|.++.. +++..|++++|||+| ....+..
T Consensus 227 ----------------------~c~~lV~DEADKlLs~~F~~~~e~li~~-------lP~~rQillySATFP~tVk~Fm~ 277 (459)
T KOG0326|consen 227 ----------------------DCVILVMDEADKLLSVDFQPIVEKLISF-------LPKERQILLYSATFPLTVKGFMD 277 (459)
T ss_pred ----------------------hceEEEechhhhhhchhhhhHHHHHHHh-------CCccceeeEEecccchhHHHHHH
Confidence 077899999998888 899998887654 588899999999999 3455544
Q ss_pred HhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhh
Q psy14582 864 LLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCL 943 (1689)
Q Consensus 864 ~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~ 943 (1689)
....+| ...+.-....+..+.|+|..+.+..+.. |+..+.....-+|.||||+|.+.++.+|+.+.+.+.
T Consensus 278 ~~l~kP--y~INLM~eLtl~GvtQyYafV~e~qKvh--------CLntLfskLqINQsIIFCNS~~rVELLAkKITelGy 347 (459)
T KOG0326|consen 278 RHLKKP--YEINLMEELTLKGVTQYYAFVEERQKVH--------CLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGY 347 (459)
T ss_pred HhccCc--ceeehhhhhhhcchhhheeeechhhhhh--------hHHHHHHHhcccceEEEeccchHhHHHHHHHHhccc
Confidence 433333 2345555666777888888777766543 444444555568999999999999999999988654
Q ss_pred hccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCC
Q psy14582 944 EKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPA 1023 (1689)
Q Consensus 944 ~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~ 1023 (1689)
.+ .|.||.|.+++|+.|+..|++|..+.|||||.+.||||+++
T Consensus 348 sc-------------------------------------yyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqa 390 (459)
T KOG0326|consen 348 SC-------------------------------------YYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQA 390 (459)
T ss_pred hh-------------------------------------hHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccce
Confidence 43 34499999999999999999999999999999999999999
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEE
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGV 1103 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~i 1103 (1689)
|++| .++|+|.. +..|+||+||+||.| ..|.||
T Consensus 391 vNvV------------------------INFDfpk~---------------------aEtYLHRIGRsGRFG--hlGlAI 423 (459)
T KOG0326|consen 391 VNVV------------------------INFDFPKN---------------------AETYLHRIGRSGRFG--HLGLAI 423 (459)
T ss_pred eeEE------------------------EecCCCCC---------------------HHHHHHHccCCccCC--CcceEE
Confidence 9999 56666644 889999999999988 899999
Q ss_pred EEecCCcHH
Q psy14582 1104 LITNHSELQ 1112 (1689)
Q Consensus 1104 il~~~~~~~ 1112 (1689)
-+.+..+..
T Consensus 424 nLityedrf 432 (459)
T KOG0326|consen 424 NLITYEDRF 432 (459)
T ss_pred EEEehhhhh
Confidence 887766543
No 45
>KOG0328|consensus
Probab=100.00 E-value=3e-34 Score=311.54 Aligned_cols=344 Identities=17% Similarity=0.258 Sum_probs=244.7
Q ss_pred CccHH-HHHhcc-CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRY-VQHAFE-DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~-~~~~f~-g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+|.+. ++..+. ||++|..||+.|+|.++ +|+|+|+.|+.|+|||.+|.+.+++.+.- ......+++++|
T Consensus 33 gl~edlLrgiY~yGfekPS~IQqrAi~~Il-kGrdViaQaqSGTGKTa~~si~vlq~~d~--------~~r~tQ~lilsP 103 (400)
T KOG0328|consen 33 GLKEDLLRGIYAYGFEKPSAIQQRAIPQIL-KGRDVIAQAQSGTGKTATFSISVLQSLDI--------SVRETQALILSP 103 (400)
T ss_pred CchHHHHHHHHHhccCCchHHHhhhhhhhh-cccceEEEecCCCCceEEEEeeeeeeccc--------ccceeeEEEecC
Confidence 56554 444555 99999999999999999 89999999999999999999998876542 224578999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
|||||.|+...+..-- ..-++|+..+-+.-. .
T Consensus 104 TRELa~Qi~~vi~alg-------------------------~~mnvq~hacigg~n-~---------------------- 135 (400)
T KOG0328|consen 104 TRELAVQIQKVILALG-------------------------DYMNVQCHACIGGKN-L---------------------- 135 (400)
T ss_pred hHHHHHHHHHHHHHhc-------------------------ccccceEEEEecCCc-c----------------------
Confidence 9999999874332100 001122211110000 0
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
...+++.+ . +.+++.+| |+..+|.+-+|+
T Consensus 136 --------------gedikkld-~-------------G~hvVsGt--------PGrv~dmikr~~--------------- 164 (400)
T KOG0328|consen 136 --------------GEDIKKLD-Y-------------GQHVVSGT--------PGRVLDMIKRRS--------------- 164 (400)
T ss_pred --------------chhhhhhc-c-------------cceEeeCC--------CchHHHHHHhcc---------------
Confidence 11111111 1 77899999 996555554420
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
T Consensus 165 -------------------------------------------------------------------------------- 164 (400)
T KOG0328|consen 165 -------------------------------------------------------------------------------- 164 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecCC-chhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYKDVA 862 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d~-rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~dva 862 (1689)
|-...++++|+||++.+.+. .+..+ -.....+++..|++++|||+| .+.+..
T Consensus 165 -------------------L~tr~vkmlVLDEaDemL~kgfk~Qi-------ydiyr~lp~~~Qvv~~SATlp~eilemt 218 (400)
T KOG0328|consen 165 -------------------LRTRAVKMLVLDEADEMLNKGFKEQI-------YDIYRYLPPGAQVVLVSATLPHEILEMT 218 (400)
T ss_pred -------------------ccccceeEEEeccHHHHHHhhHHHHH-------HHHHHhCCCCceEEEEeccCcHHHHHHH
Confidence 00001899999999988763 22221 122345788999999999999 577777
Q ss_pred HHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhh
Q psy14582 863 TLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMC 942 (1689)
Q Consensus 863 ~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~ 942 (1689)
+++..+|.+ ++.-.....-..+++.|+.+...+. .+..+. .+|+. ..-.|++|||+|++.+..+.+.+++..
T Consensus 219 ~kfmtdpvr-ilvkrdeltlEgIKqf~v~ve~Eew--KfdtLc-dLYd~----LtItQavIFcnTk~kVdwLtekm~~~n 290 (400)
T KOG0328|consen 219 EKFMTDPVR-ILVKRDELTLEGIKQFFVAVEKEEW--KFDTLC-DLYDT----LTITQAVIFCNTKRKVDWLTEKMREAN 290 (400)
T ss_pred HHhcCCcee-EEEecCCCchhhhhhheeeechhhh--hHhHHH-HHhhh----hehheEEEEecccchhhHHHHHHHhhC
Confidence 788777765 3333333322337788887765431 222222 23433 335799999999999999988887633
Q ss_pred hhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCC
Q psy14582 943 LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 943 ~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp 1022 (1689)
. .+...||.|.+++|..+...|+.|+-+||++|++-+||+|+|
T Consensus 291 f-------------------------------------tVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~ 333 (400)
T KOG0328|consen 291 F-------------------------------------TVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQ 333 (400)
T ss_pred c-------------------------------------eeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcc
Confidence 2 234449999999999999999999999999999999999999
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
.|++| .+++||.. ...|+||+||+||.| +.|.+
T Consensus 334 qVslv------------------------iNYDLP~n---------------------re~YIHRIGRSGRFG--RkGva 366 (400)
T KOG0328|consen 334 QVSLV------------------------INYDLPNN---------------------RELYIHRIGRSGRFG--RKGVA 366 (400)
T ss_pred eeEEE------------------------EecCCCcc---------------------HHHHhhhhccccccC--CcceE
Confidence 99999 78999977 678999999999988 99999
Q ss_pred EEEecCCcHHHHHH
Q psy14582 1103 VLITNHSELQYYLS 1116 (1689)
Q Consensus 1103 iil~~~~~~~~y~~ 1116 (1689)
|-|+..++...|..
T Consensus 367 inFVk~~d~~~lrd 380 (400)
T KOG0328|consen 367 INFVKSDDLRILRD 380 (400)
T ss_pred EEEecHHHHHHHHH
Confidence 99999988766554
No 46
>KOG0336|consensus
Probab=100.00 E-value=6.6e-34 Score=321.08 Aligned_cols=352 Identities=18% Similarity=0.281 Sum_probs=244.7
Q ss_pred CccHHHHHhcc-CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccc
Q psy14582 467 KLPRYVQHAFE-DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545 (1689)
Q Consensus 467 ~Lp~~~~~~f~-g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPt 545 (1689)
.-|+.+...-+ ||.+|||||++|+|.+| +|.|+++.|+||+|||++|++|-+-++.......+ +..++.+|+++||
T Consensus 227 ~~pevmenIkK~GFqKPtPIqSQaWPI~L-QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~--qr~~p~~lvl~pt 303 (629)
T KOG0336|consen 227 CYPEVMENIKKTGFQKPTPIQSQAWPILL-QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE--QRNGPGVLVLTPT 303 (629)
T ss_pred hhHHHHHHHHhccCCCCCcchhcccceee-cCcceEEEEecCCCcCHHHhccceeeeeccchhhh--ccCCCceEEEecc
Confidence 44555555444 99999999999999999 89999999999999999999998877765433222 4567899999999
Q ss_pred hhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCc
Q psy14582 546 RSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFR 625 (1689)
Q Consensus 546 reLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r 625 (1689)
|+||.|+..+..+.- .+.. ..+.+++...|
T Consensus 304 reLalqie~e~~kys--------------------------yng~------------------------ksvc~ygggnR 333 (629)
T KOG0336|consen 304 RELALQIEGEVKKYS--------------------------YNGL------------------------KSVCVYGGGNR 333 (629)
T ss_pred HHHHHHHHhHHhHhh--------------------------hcCc------------------------ceEEEecCCCc
Confidence 999999875443311 0000 11122222222
Q ss_pred cccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCcc
Q psy14582 626 PVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVV 705 (1689)
Q Consensus 626 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~i 705 (1689)
+. .-+++ ..+..|+++| |. .+++..-..
T Consensus 334 ~e---------------qie~l------------krgveiiiat--------Pg-rlndL~~~n---------------- 361 (629)
T KOG0336|consen 334 NE---------------QIEDL------------KRGVEIIIAT--------PG-RLNDLQMDN---------------- 361 (629)
T ss_pred hh---------------HHHHH------------hcCceEEeeC--------Cc-hHhhhhhcC----------------
Confidence 21 11111 1267899999 99 555433200
Q ss_pred cchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccC
Q psy14582 706 LHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINAD 785 (1689)
Q Consensus 706 l~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~ 785 (1689)
++. + .
T Consensus 362 ---------------------------------~i~-----------------------------l-------~------ 366 (629)
T KOG0336|consen 362 ---------------------------------VIN-----------------------------L-------A------ 366 (629)
T ss_pred ---------------------------------eee-----------------------------e-------e------
Confidence 000 0 0
Q ss_pred CCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHHHHHH
Q psy14582 786 GTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYKDVAT 863 (1689)
Q Consensus 786 ~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~dva~ 863 (1689)
.+-++|+||++.+.| .+.+.+..++- ...++.+.++.|||.| ....++.
T Consensus 367 ----------------------siTYlVlDEADrMLDMgFEpqIrkill-------diRPDRqtvmTSATWP~~VrrLa~ 417 (629)
T KOG0336|consen 367 ----------------------SITYLVLDEADRMLDMGFEPQIRKILL-------DIRPDRQTVMTSATWPEGVRRLAQ 417 (629)
T ss_pred ----------------------eeEEEEecchhhhhcccccHHHHHHhh-------hcCCcceeeeecccCchHHHHHHH
Confidence 067899999999988 66666544432 3467899999999999 5777877
Q ss_pred HhhcCCCccEEEecCCCccc-ceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhh
Q psy14582 864 LLRIKPETGLFYFDNSFRPV-ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMC 942 (1689)
Q Consensus 864 ~L~~~~~~~~~~f~~~~Rpv-pL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~ 942 (1689)
-...++.. +++-.-..-.+ .++|.++..++..+.. .+. ..+.......++||||.++..|..+...|.-.+
T Consensus 418 sY~Kep~~-v~vGsLdL~a~~sVkQ~i~v~~d~~k~~---~~~----~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~g 489 (629)
T KOG0336|consen 418 SYLKEPMI-VYVGSLDLVAVKSVKQNIIVTTDSEKLE---IVQ----FFVANMSSNDKVIIFVSRKVMADHLSSDFCLKG 489 (629)
T ss_pred HhhhCceE-EEecccceeeeeeeeeeEEecccHHHHH---HHH----HHHHhcCCCceEEEEEechhhhhhccchhhhcc
Confidence 66655432 22212222222 3455554444333322 211 123344556799999999988877777665433
Q ss_pred hhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCC
Q psy14582 943 LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 943 ~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp 1022 (1689)
.....+ ||+-.+.||+..++.|+.|.++|||||++++||+|+|
T Consensus 490 i~~q~l-------------------------------------HG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~ 532 (629)
T KOG0336|consen 490 ISSQSL-------------------------------------HGNREQSDREMALEDFKSGEVRILVATDLASRGLDVP 532 (629)
T ss_pred cchhhc-------------------------------------cCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCch
Confidence 322222 9999999999999999999999999999999999999
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
+|+|| .++++|-+ +.+|+||+||+||+| +.|.+
T Consensus 533 DiTHV------------------------~NyDFP~n---------------------IeeYVHRvGrtGRaG--r~G~s 565 (629)
T KOG0336|consen 533 DITHV------------------------YNYDFPRN---------------------IEEYVHRVGRTGRAG--RTGTS 565 (629)
T ss_pred hccee------------------------eccCCCcc---------------------HHHHHHHhcccccCC--CCcce
Confidence 99999 67777755 899999999999999 89999
Q ss_pred EEEecCCcHHHHHHHhh
Q psy14582 1103 VLITNHSELQYYLSLLN 1119 (1689)
Q Consensus 1103 iil~~~~~~~~y~~ll~ 1119 (1689)
+.+.+..+......++.
T Consensus 566 is~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 566 ISFLTRNDWSMAEELIQ 582 (629)
T ss_pred EEEEehhhHHHHHHHHH
Confidence 99999888877766554
No 47
>KOG0346|consensus
Probab=100.00 E-value=3e-33 Score=319.85 Aligned_cols=349 Identities=18% Similarity=0.232 Sum_probs=246.1
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+|.+.+.+++. ||..||-||+.|||.|| .|+|+++.|.||||||+||++|+++.|......+ ....++.+++++|
T Consensus 25 gLD~RllkAi~~lG~ekpTlIQs~aIplaL-EgKDvvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa~iLvP 101 (569)
T KOG0346|consen 25 GLDSRLLKAITKLGWEKPTLIQSSAIPLAL-EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSAVILVP 101 (569)
T ss_pred CCCHHHHHHHHHhCcCCcchhhhcccchhh-cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc--cccccceeEEEec
Confidence 68888888886 99999999999999999 7999999999999999999999999998764432 2346789999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
|||||+|++..+.+ + +..|.+.+|++-++..++... ...||
T Consensus 102 TkEL~qQvy~viek--------------------L---~~~c~k~lr~~nl~s~~sdsv-~~~~L--------------- 142 (569)
T KOG0346|consen 102 TKELAQQVYKVIEK--------------------L---VEYCSKDLRAINLASSMSDSV-NSVAL--------------- 142 (569)
T ss_pred hHHHHHHHHHHHHH--------------------H---HHHHHHhhhhhhhhcccchHH-HHHHH---------------
Confidence 99999999955533 0 122333334333332222111 11111
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
.+.++|+|+| |. +.-....
T Consensus 143 -----------------------------------~d~pdIvV~T--------P~-~ll~~~~----------------- 161 (569)
T KOG0346|consen 143 -----------------------------------MDLPDIVVAT--------PA-KLLRHLA----------------- 161 (569)
T ss_pred -----------------------------------ccCCCeEEeC--------hH-HHHHHHh-----------------
Confidence 1278999999 98 2111110
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
.|.- .
T Consensus 162 ---------------------------------------------------------~~~~---~--------------- 166 (569)
T KOG0346|consen 162 ---------------------------------------------------------AGVL---E--------------- 166 (569)
T ss_pred ---------------------------------------------------------hccc---h---------------
Confidence 1110 0
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYKDVAT 863 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~dva~ 863 (1689)
....++++|+||++++.. .|.-=+ ++...+.+++..|.+++|||+. +...+..
T Consensus 167 --------------------~~~~l~~LVvDEADLlls-fGYeed-----lk~l~~~LPr~~Q~~LmSATl~dDv~~LKk 220 (569)
T KOG0346|consen 167 --------------------YLDSLSFLVVDEADLLLS-FGYEED-----LKKLRSHLPRIYQCFLMSATLSDDVQALKK 220 (569)
T ss_pred --------------------hhhheeeEEechhhhhhh-cccHHH-----HHHHHHhCCchhhheeehhhhhhHHHHHHH
Confidence 001188999999999874 343322 1223346788899999999999 5666666
Q ss_pred HhhcCCCccEEEecCCCc--ccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHh
Q psy14582 864 LLRIKPETGLFYFDNSFR--PVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDM 941 (1689)
Q Consensus 864 ~L~~~~~~~~~~f~~~~R--pvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~ 941 (1689)
.+..+|.. ..+....- |-.|.|+++.+.+..+.- .+|..+.-..-.+++||||||...|.++--.|...
T Consensus 221 L~l~nPvi--Lkl~e~el~~~dqL~Qy~v~cse~DKfl-------llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqF 291 (569)
T KOG0346|consen 221 LFLHNPVI--LKLTEGELPNPDQLTQYQVKCSEEDKFL-------LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQF 291 (569)
T ss_pred HhccCCeE--EEeccccCCCcccceEEEEEeccchhHH-------HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHh
Confidence 66666543 33333333 355888888888554432 22322222233588999999999999998888776
Q ss_pred hhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcch-------
Q psy14582 942 CLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTAT------- 1014 (1689)
Q Consensus 942 ~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~v------- 1014 (1689)
+..... .++.|+.+-|-.|.+.|..|..+++||||.
T Consensus 292 Giksci-------------------------------------LNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ 334 (569)
T KOG0346|consen 292 GIKSCI-------------------------------------LNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKL 334 (569)
T ss_pred CcHhhh-------------------------------------hcccccccchhhHHHHhhCcceeEEEEccCccchhhh
Confidence 554332 389999999999999999999999999992
Q ss_pred ----------------------------hccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEece
Q psy14582 1015 ----------------------------LAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGT 1066 (1689)
Q Consensus 1015 ----------------------------l~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt 1066 (1689)
.+||||+.+|..| .++|+|..
T Consensus 335 eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~V------------------------lNFD~P~t------- 383 (569)
T KOG0346|consen 335 EEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNV------------------------LNFDFPET------- 383 (569)
T ss_pred hccccccccccCCCCccccccccCchhchhccccchheeee------------------------eecCCCCc-------
Confidence 3477777777777 56666644
Q ss_pred eeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHH
Q psy14582 1067 QIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQ 1112 (1689)
Q Consensus 1067 ~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~ 1112 (1689)
+..|+||+||++|++ +.|.++.|+.+.+..
T Consensus 384 --------------~~sYIHRvGRTaRg~--n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 384 --------------VTSYIHRVGRTARGN--NKGTALSFVSPKEEF 413 (569)
T ss_pred --------------hHHHHHhccccccCC--CCCceEEEecchHHh
Confidence 789999999999998 899999999887654
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.2e-32 Score=349.91 Aligned_cols=216 Identities=19% Similarity=0.264 Sum_probs=152.8
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCC--HHHHHHHhhcCCCccEEEecCCCcccceE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN--YKDVATLLRIKPETGLFYFDNSFRPVALE 886 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dva~~L~~~~~~~~~~f~~~~RpvpL~ 886 (1689)
++++|+||+|++.+ .|..+.....++..... ..+..+++++|||.+. ..++..+++..... .++....|| .+.
T Consensus 128 l~~iViDEaH~i~~-~g~~frp~y~~l~~l~~-~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~--~~~~~~~r~-nl~ 202 (591)
T TIGR01389 128 IALVAVDEAHCVSQ-WGHDFRPEYQRLGSLAE-RFPQVPRIALTATADAETRQDIRELLRLADAN--EFITSFDRP-NLR 202 (591)
T ss_pred CCEEEEeCCccccc-ccCccHHHHHHHHHHHH-hCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCC--eEecCCCCC-CcE
Confidence 89999999999863 23222222222222222 2345569999999983 56788998865432 223333344 332
Q ss_pred EEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhh
Q psy14582 887 QQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEA 966 (1689)
Q Consensus 887 ~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~ 966 (1689)
..+.. .... . ..+.+.+.. ..+.++||||+|++.|+.++..|...+
T Consensus 203 ~~v~~--~~~~---~----~~l~~~l~~-~~~~~~IIf~~sr~~~e~la~~L~~~g------------------------ 248 (591)
T TIGR01389 203 FSVVK--KNNK---Q----KFLLDYLKK-HRGQSGIIYASSRKKVEELAERLESQG------------------------ 248 (591)
T ss_pred EEEEe--CCCH---H----HHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCC------------------------
Confidence 22222 1111 1 112222322 236789999999999999999886521
Q ss_pred hhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEE
Q psy14582 967 DQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVS 1046 (1689)
Q Consensus 967 ~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVa 1046 (1689)
..++.|||||+..+|..+++.|.+|.++|||||+++++|||+|+|++| |
T Consensus 249 -------------~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~V-----------------I- 297 (591)
T TIGR01389 249 -------------ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFV-----------------I- 297 (591)
T ss_pred -------------CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEE-----------------E-
Confidence 235778999999999999999999999999999999999999999998 2
Q ss_pred cccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCcCC
Q psy14582 1047 TATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLP 1123 (1689)
Q Consensus 1047 T~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 1123 (1689)
.+++| .|+.+|.||+|||||.| ..|.|+++++..+...+..++....|
T Consensus 298 ------~~~~p---------------------~s~~~y~Q~~GRaGR~G--~~~~~il~~~~~d~~~~~~~i~~~~~ 345 (591)
T TIGR01389 298 ------HYDMP---------------------GNLESYYQEAGRAGRDG--LPAEAILLYSPADIALLKRRIEQSEA 345 (591)
T ss_pred ------EcCCC---------------------CCHHHHhhhhccccCCC--CCceEEEecCHHHHHHHHHHHhccCC
Confidence 33444 34889999999999988 78999999999988888888776554
No 49
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.7e-32 Score=348.62 Aligned_cols=211 Identities=22% Similarity=0.324 Sum_probs=149.8
Q ss_pred hhccccCCceeecC---CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCH--HHHHHHhhcCCCccEEEecCCCccc
Q psy14582 809 VGNFGKDEIHLLHD---ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNY--KDVATLLRIKPETGLFYFDNSFRPV 883 (1689)
Q Consensus 809 v~liIiDEiHll~d---~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~--~dva~~L~~~~~~~~~~f~~~~Rpv 883 (1689)
++++||||+|.+.+ +..+.+..+ ..+....++++++++|||+++. .++..+++... .........||
T Consensus 140 l~~iVIDEaH~i~~~G~~fr~~y~~L-----~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~--~~~~~~~~~r~- 211 (607)
T PRK11057 140 PALLAVDEAHCISQWGHDFRPEYAAL-----GQLRQRFPTLPFMALTATADDTTRQDIVRLLGLND--PLIQISSFDRP- 211 (607)
T ss_pred CCEEEEeCccccccccCcccHHHHHH-----HHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCC--eEEEECCCCCC-
Confidence 78999999999864 122222221 1122334678999999999953 46777776542 23333333344
Q ss_pred ceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHH
Q psy14582 884 ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLR 963 (1689)
Q Consensus 884 pL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~ 963 (1689)
++...+ ....... . .+...+ ....++++||||+|++.|+.++..|...+
T Consensus 212 nl~~~v--~~~~~~~---~----~l~~~l-~~~~~~~~IIFc~tr~~~e~la~~L~~~g--------------------- 260 (607)
T PRK11057 212 NIRYTL--VEKFKPL---D----QLMRYV-QEQRGKSGIIYCNSRAKVEDTAARLQSRG--------------------- 260 (607)
T ss_pred cceeee--eeccchH---H----HHHHHH-HhcCCCCEEEEECcHHHHHHHHHHHHhCC---------------------
Confidence 332221 1111111 1 112222 23456789999999999999999887532
Q ss_pred HhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceE
Q psy14582 964 TEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQV 1043 (1689)
Q Consensus 964 ~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~v 1043 (1689)
..++.|||||++.+|..+++.|+.|.++|||||+++++|||+|+|++|
T Consensus 261 ----------------~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~V---------------- 308 (607)
T PRK11057 261 ----------------ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFV---------------- 308 (607)
T ss_pred ----------------CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEE----------------
Confidence 246778999999999999999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCc
Q psy14582 1044 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQ 1121 (1689)
Q Consensus 1044 LVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~ 1121 (1689)
| +||. +.|+.+|+||+|||||.| ..|.|+++.+..+...+..++.+.
T Consensus 309 -I----------------------~~d~------P~s~~~y~Qr~GRaGR~G--~~~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 309 -V----------------------HFDI------PRNIESYYQETGRAGRDG--LPAEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred -E----------------------EeCC------CCCHHHHHHHhhhccCCC--CCceEEEEeCHHHHHHHHHHHhcC
Confidence 3 2333 246899999999999998 779999999998888888877653
No 50
>KOG0341|consensus
Probab=100.00 E-value=1.7e-32 Score=307.80 Aligned_cols=368 Identities=19% Similarity=0.237 Sum_probs=243.7
Q ss_pred CCCceEecCCCCCCCCCCCCCccCCCCccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHH
Q psy14582 441 KGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 441 ~~yeev~vp~~~~~p~~~~~~l~~~~~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpi 518 (1689)
+.|....-....|+|+.+|... ..|..+...++ |+.+|||||-+-+|++| +|+|+|..|-||||||++|+||+
T Consensus 154 k~~~I~veGd~ipPPIksF~eM----KFP~~~L~~lk~KGI~~PTpIQvQGlPvvL-sGRDmIGIAfTGSGKTlvFvLP~ 228 (610)
T KOG0341|consen 154 KQLHILVEGDDIPPPIKSFKEM----KFPKPLLRGLKKKGIVHPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPV 228 (610)
T ss_pred HhheEEeeCCCCCCchhhhhhc----cCCHHHHHHHHhcCCCCCCceeecCcceEe-ecCceeeEEeecCCceEEEeHHH
Confidence 3344333344456677777655 57888877775 99999999999999999 99999999999999999999998
Q ss_pred HHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeec
Q psy14582 519 LQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSAT 598 (1689)
Q Consensus 519 L~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT 598 (1689)
+.......-.-.-....|+..++|+|.|+||.|.++.+..-..++..
T Consensus 229 imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e--------------------------------- 275 (610)
T KOG0341|consen 229 IMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQE--------------------------------- 275 (610)
T ss_pred HHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHh---------------------------------
Confidence 76554321111112346889999999999999988544221111110
Q ss_pred CCCHHHHHHHHhhCCCCCceeecCCCccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccC
Q psy14582 599 LPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISP 678 (1689)
Q Consensus 599 ~~~~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P 678 (1689)
..+..++..|...+ +.... ++. -...+.+|+|+| |
T Consensus 276 -~g~P~lRs~LciGG----------------------~~v~e-----ql~---------~v~~GvHivVAT--------P 310 (610)
T KOG0341|consen 276 -AGYPELRSLLCIGG----------------------VPVRE-----QLD---------VVRRGVHIVVAT--------P 310 (610)
T ss_pred -cCChhhhhhhhhcC----------------------ccHHH-----HHH---------HHhcCeeEEEcC--------c
Confidence 01112222221110 00011 100 011277999999 9
Q ss_pred CccccccccCCCcceeEEEEeCCCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeE
Q psy14582 679 DFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSF 758 (1689)
Q Consensus 679 ~f~wd~~~~g~~e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~ 758 (1689)
+ ++.+...
T Consensus 311 G-RL~DmL~----------------------------------------------------------------------- 318 (610)
T KOG0341|consen 311 G-RLMDMLA----------------------------------------------------------------------- 318 (610)
T ss_pred c-hHHHHHH-----------------------------------------------------------------------
Confidence 9 3332221
Q ss_pred eecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHH
Q psy14582 759 RLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIR 837 (1689)
Q Consensus 759 ~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~ 837 (1689)
|-. +..+.++++.+||++.+.| .+..-+..+++.
T Consensus 319 -------KK~-----------------------------------~sLd~CRyL~lDEADRmiDmGFEddir~iF~~--- 353 (610)
T KOG0341|consen 319 -------KKI-----------------------------------MSLDACRYLTLDEADRMIDMGFEDDIRTIFSF--- 353 (610)
T ss_pred -------Hhh-----------------------------------ccHHHHHHhhhhhHHHHhhccchhhHHHHHHH---
Confidence 101 1112388999999999887 444444444443
Q ss_pred HHHhccccceEEEEecCCC-CHHHHHHHhhcCCCccEEEecCCCcccceEEEEEeechhhHH---HHHHHhhHHHHHHHH
Q psy14582 838 NIEATQEDVRLVGLSATLP-NYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKAL---KRFQVMNDIVYEKVM 913 (1689)
Q Consensus 838 ~~~~~~~~~riV~lSATl~-n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~---~~~~~m~~~~~~~i~ 913 (1689)
.....|.++||||+| .+.-+|+---++ |+.+...-.+.-.-... .....-++.+| ++
T Consensus 354 ----FK~QRQTLLFSATMP~KIQ~FAkSALVK-------------PvtvNVGRAGAAsldViQevEyVkqEaKiVy--lL 414 (610)
T KOG0341|consen 354 ----FKGQRQTLLFSATMPKKIQNFAKSALVK-------------PVTVNVGRAGAASLDVIQEVEYVKQEAKIVY--LL 414 (610)
T ss_pred ----HhhhhheeeeeccccHHHHHHHHhhccc-------------ceEEecccccccchhHHHHHHHHHhhhhhhh--HH
Confidence 345678999999999 344444433333 33332222221111111 11111223333 22
Q ss_pred HHh--CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCH
Q psy14582 914 EHA--GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTR 991 (1689)
Q Consensus 914 ~~~--~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~ 991 (1689)
+.. ...|+||||..+.++..+..+|.-.+.+...+ |||-.+
T Consensus 415 eCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaI-------------------------------------HGGKDQ 457 (610)
T KOG0341|consen 415 ECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAI-------------------------------------HGGKDQ 457 (610)
T ss_pred HHhccCCCceEEEeccccChHHHHHHHHHccceeEEe-------------------------------------ecCcch
Confidence 332 24689999999999999999887655444333 999999
Q ss_pred HHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecC
Q psy14582 992 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 1071 (1689)
Q Consensus 992 ~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~ 1071 (1689)
++|....++|+.|+-.|||||++++.|+|+|++.+| .++++|..
T Consensus 458 edR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHV------------------------INyDMP~e------------ 501 (610)
T KOG0341|consen 458 EDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHV------------------------INYDMPEE------------ 501 (610)
T ss_pred hHHHHHHHHHhcCCCceEEEecchhccCCCccchhh------------------------ccCCChHH------------
Confidence 999999999999999999999999999999999999 78899977
Q ss_pred CCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcH
Q psy14582 1072 EKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL 1111 (1689)
Q Consensus 1072 ~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~ 1111 (1689)
+..|+||+||+||.| +.|.+..|.+....
T Consensus 502 ---------IENYVHRIGRTGRsg--~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 502 ---------IENYVHRIGRTGRSG--KTGIATTFINKNQE 530 (610)
T ss_pred ---------HHHHHHHhcccCCCC--Ccceeeeeecccch
Confidence 899999999999999 89999999887543
No 51
>KOG0347|consensus
Probab=100.00 E-value=2e-33 Score=328.25 Aligned_cols=365 Identities=20% Similarity=0.251 Sum_probs=233.6
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCC---CCCCCCCe--EE
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINAD---GTINADEF--KI 539 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~---g~~~~~~~--kv 539 (1689)
.||..+..++. ||..||+||+.++|.|+....|+|+.|.||||||+||.+||+..+....... .......+ .+
T Consensus 187 ~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~ 266 (731)
T KOG0347|consen 187 FLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIA 266 (731)
T ss_pred CCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCccee
Confidence 57888888886 9999999999999999943389999999999999999999999665432210 00112233 49
Q ss_pred EEEccchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCcee
Q psy14582 540 IYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFY 619 (1689)
Q Consensus 540 l~laPtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~ 619 (1689)
++++||||||-|+...|..-. ...+++++.+.+
T Consensus 267 LV~tPTRELa~QV~~Hl~ai~-------------------------~~t~i~v~si~G---------------------- 299 (731)
T KOG0347|consen 267 LVVTPTRELAHQVKQHLKAIA-------------------------EKTQIRVASITG---------------------- 299 (731)
T ss_pred EEecChHHHHHHHHHHHHHhc-------------------------cccCeEEEEeec----------------------
Confidence 999999999999984332100 011222222211
Q ss_pred ecCCCccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEe
Q psy14582 620 FDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVED 699 (1689)
Q Consensus 620 ~~~~~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD 699 (1689)
.....+++.+ ++. .++|+|+| |+..|..+-.+
T Consensus 300 -------------------GLavqKQqRl--------L~~--~p~IVVAT--------PGRlweli~e~----------- 331 (731)
T KOG0347|consen 300 -------------------GLAVQKQQRL--------LNQ--RPDIVVAT--------PGRLWELIEED----------- 331 (731)
T ss_pred -------------------hhHHHHHHHH--------Hhc--CCCEEEec--------chHHHHHHHhh-----------
Confidence 2233333332 111 88999999 99888765541
Q ss_pred CCCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhh
Q psy14582 700 VDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIG 779 (1689)
Q Consensus 700 ~d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~ 779 (1689)
-|+ +..+.
T Consensus 332 ------------------------------------------------------------------n~~------l~~~k 339 (731)
T KOG0347|consen 332 ------------------------------------------------------------------NTH------LGNFK 339 (731)
T ss_pred ------------------------------------------------------------------hhh------hhhhh
Confidence 010 11111
Q ss_pred hccccCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCH
Q psy14582 780 KHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNY 858 (1689)
Q Consensus 780 ~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~ 858 (1689)
+ ++++|+||++.+.. ..-.-++.++..+. -++.....|.+.||||+.-.
T Consensus 340 ~----------------------------vkcLVlDEaDRmvekghF~Els~lL~~L~--e~~~~~qrQTlVFSATlt~~ 389 (731)
T KOG0347|consen 340 K----------------------------VKCLVLDEADRMVEKGHFEELSKLLKHLN--EEQKNRQRQTLVFSATLTLV 389 (731)
T ss_pred h----------------------------ceEEEEccHHHHhhhccHHHHHHHHHHhh--hhhcccccceEEEEEEeehh
Confidence 1 89999999998875 33333344433221 13455678999999998721
Q ss_pred --HHHHHHhhcCCCccE-------EEecCCCcccceEEEEEeechhhHHHHHHHhhH------------HHHHHHHHHhC
Q psy14582 859 --KDVATLLRIKPETGL-------FYFDNSFRPVALEQQYIGVTEKKALKRFQVMND------------IVYEKVMEHAG 917 (1689)
Q Consensus 859 --~dva~~L~~~~~~~~-------~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~------------~~~~~i~~~~~ 917 (1689)
..+..--.......- ..-.-.+|..| .++..+...... ..+.+ .+|-.+.+ -
T Consensus 390 ~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kp---kiiD~t~q~~ta--~~l~Es~I~C~~~eKD~ylyYfl~r--y 462 (731)
T KOG0347|consen 390 LQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKP---KIIDLTPQSATA--STLTESLIECPPLEKDLYLYYFLTR--Y 462 (731)
T ss_pred hcChhHHhhhccchhhhhhHHHHHHHHHhCccCCC---eeEecCcchhHH--HHHHHHhhcCCccccceeEEEEEee--c
Confidence 111111111000000 00000111111 222222211111 00000 01111111 2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHH
Q psy14582 918 RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLV 997 (1689)
Q Consensus 918 ~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~v 997 (1689)
.+++|||||+...+.+++-.|.......-. .||.|.+..|...
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~-------------------------------------LHA~M~QKqRLkn 505 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLP-------------------------------------LHASMIQKQRLKN 505 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCch-------------------------------------hhHHHHHHHHHHh
Confidence 578999999999999999888764433222 2999999999999
Q ss_pred HHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcce
Q psy14582 998 EDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWV 1077 (1689)
Q Consensus 998 e~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~ 1077 (1689)
++.|++..-.|||||||++||+|||+|.|| +.+.+|
T Consensus 506 LEkF~~~~~~VLiaTDVAARGLDIp~V~HV------------------------IHYqVP-------------------- 541 (731)
T KOG0347|consen 506 LEKFKQSPSGVLIATDVAARGLDIPGVQHV------------------------IHYQVP-------------------- 541 (731)
T ss_pred HHHHhcCCCeEEEeehhhhccCCCCCcceE------------------------EEeecC--------------------
Confidence 999999999999999999999999999999 333333
Q ss_pred ecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhh
Q psy14582 1078 ELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLN 1119 (1689)
Q Consensus 1078 ~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 1119 (1689)
-+..-|+||.||++|++ ..|..+++|.+.+...|.++..
T Consensus 542 -rtseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~KL~k 580 (731)
T KOG0347|consen 542 -RTSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLKKLCK 580 (731)
T ss_pred -CccceeEeccccccccc--CCCeEEEEeChHHhHHHHHHHH
Confidence 34667999999999998 8999999999999888877544
No 52
>KOG0332|consensus
Probab=100.00 E-value=3.5e-32 Score=306.08 Aligned_cols=211 Identities=20% Similarity=0.294 Sum_probs=158.9
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
++.+|+||++.+.+++|..=.++ | +....+++.|++.+|||.. ....++.-+-.++ +.++.-.....-.++.|
T Consensus 233 ikvfVlDEAD~Mi~tqG~~D~S~--r---I~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~-n~i~Lk~eel~L~~IkQ 306 (477)
T KOG0332|consen 233 IKVFVLDEADVMIDTQGFQDQSI--R---IMRSLPRNQQLLLFSATFVEKVAAFALKIVPNA-NVIILKREELALDNIKQ 306 (477)
T ss_pred ceEEEecchhhhhhcccccccch--h---hhhhcCCcceEEeeechhHHHHHHHHHHhcCCC-ceeeeehhhccccchhh
Confidence 88999999999988776443332 2 2335667899999999988 3444444444333 32444444444456777
Q ss_pred EEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhh
Q psy14582 888 QYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAD 967 (1689)
Q Consensus 888 ~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~ 967 (1689)
.+..+.... ..++.+.+ +|. ...-+|.||||+|++.+.+++..+...+
T Consensus 307 lyv~C~~~~--~K~~~l~~-lyg----~~tigqsiIFc~tk~ta~~l~~~m~~~G------------------------- 354 (477)
T KOG0332|consen 307 LYVLCACRD--DKYQALVN-LYG----LLTIGQSIIFCHTKATAMWLYEEMRAEG------------------------- 354 (477)
T ss_pred heeeccchh--hHHHHHHH-HHh----hhhhhheEEEEeehhhHHHHHHHHHhcC-------------------------
Confidence 777776533 23444333 333 2335899999999999999999888744
Q ss_pred hccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEc
Q psy14582 968 QVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVST 1047 (1689)
Q Consensus 968 ~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT 1047 (1689)
+.|+..||.|+..+|..+.+.|+.|.-+|||+|++.+||||++.|++|
T Consensus 355 ------------h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~V-------------------- 402 (477)
T KOG0332|consen 355 ------------HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVV-------------------- 402 (477)
T ss_pred ------------ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEE--------------------
Confidence 345666999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1048 ATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1048 ~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
.++|||.. |+++ .....|+||+||+||.| +.|.++-+....+
T Consensus 403 ----vNydlP~~---------~~~~------pD~etYlHRiGRtGRFG--kkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 403 ----VNYDLPVK---------YTGE------PDYETYLHRIGRTGRFG--KKGLAINLVDDKD 444 (477)
T ss_pred ----EecCCccc---------cCCC------CCHHHHHHHhccccccc--ccceEEEeecccC
Confidence 79999966 4433 45889999999999988 9999999887654
No 53
>KOG0344|consensus
Probab=99.97 E-value=1.4e-31 Score=319.17 Aligned_cols=372 Identities=21% Similarity=0.306 Sum_probs=237.7
Q ss_pred CCCCCCCCCccCCCCccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCC
Q psy14582 453 PKPMGPDETLVPIDKLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADG 530 (1689)
Q Consensus 453 ~~p~~~~~~l~~~~~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g 530 (1689)
++|..++..+..-+...+.+...+. +|..|+|+|.+|+|..+ .++|++.|||||||||++|.+|++.+|..+..
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl-~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~--- 203 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFL-EKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ--- 203 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhh-cccceEEeccCCCcchhhhhhHHHHHHHHhhc---
Confidence 4456666666555666777777775 99999999999999998 79999999999999999999999999987643
Q ss_pred CCCCCCeEEEEEccchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHh
Q psy14582 531 TINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLR 610 (1689)
Q Consensus 531 ~~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~ 610 (1689)
..+..|.++++++|||+||.|++.++.+--. + . ....++.++|....
T Consensus 204 ~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~----~-~------------------~t~~~a~~~~~~~~---------- 250 (593)
T KOG0344|consen 204 EKHKVGLRALILSPTRELAAQIYREMRKYSI----D-E------------------GTSLRAAQFSKPAY---------- 250 (593)
T ss_pred ccCccceEEEEecchHHHHHHHHHHHHhcCC----C-C------------------CCchhhhhcccccc----------
Confidence 1234689999999999999999966543110 0 0 00011111110000
Q ss_pred hCCCCCceeecCCCccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCC
Q psy14582 611 IKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGS 690 (1689)
Q Consensus 611 ~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~ 690 (1689)
| .. +...... ....+++.| |. . ....
T Consensus 251 ---------------~------------~q---k~a~~~~----------~k~dili~T--------P~-r--i~~~--- 276 (593)
T KOG0344|consen 251 ---------------P------------SQ---KPAFLSD----------EKYDILIST--------PM-R--IVGL--- 276 (593)
T ss_pred ---------------h------------hh---ccchhHH----------HHHHHHhcC--------HH-H--HHHH---
Confidence 0 00 0000000 044677888 76 1 1100
Q ss_pred cceeEEEEeCCCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHH
Q psy14582 691 EGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVA 770 (1689)
Q Consensus 691 e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~ 770 (1689)
-|.|++...
T Consensus 277 -----------------------------------------------------------------------~~~~~~~id 285 (593)
T KOG0344|consen 277 -----------------------------------------------------------------------LGLGKLNID 285 (593)
T ss_pred -----------------------------------------------------------------------hcCCCccch
Confidence 223333332
Q ss_pred HHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEE
Q psy14582 771 LLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVG 850 (1689)
Q Consensus 771 lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~ 850 (1689)
+ ..|.++|+||++++.+. ..+-.-+++... ....+.+++-+
T Consensus 286 l-----------------------------------~~V~~lV~dEaD~lfe~--~~f~~Qla~I~s--ac~s~~i~~a~ 326 (593)
T KOG0344|consen 286 L-----------------------------------SKVEWLVVDEADLLFEP--EFFVEQLADIYS--ACQSPDIRVAL 326 (593)
T ss_pred h-----------------------------------heeeeEeechHHhhhCh--hhHHHHHHHHHH--HhcCcchhhhh
Confidence 2 01889999999999764 111111122211 12347899999
Q ss_pred EecCCC-CHHHHHHHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChH
Q psy14582 851 LSATLP-NYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRK 929 (1689)
Q Consensus 851 lSATl~-n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk 929 (1689)
||||++ +.+++++.........++-..++ ....+.|....+..... + +.+ +..+....-..|+||||.+..
T Consensus 327 FSat~~~~VEE~~~~i~~~~~~vivg~~~s-a~~~V~QelvF~gse~~-K-~lA-----~rq~v~~g~~PP~lIfVQs~e 398 (593)
T KOG0344|consen 327 FSATISVYVEEWAELIKSDLKRVIVGLRNS-ANETVDQELVFCGSEKG-K-LLA-----LRQLVASGFKPPVLIFVQSKE 398 (593)
T ss_pred hhccccHHHHHHHHHhhccceeEEEecchh-Hhhhhhhhheeeecchh-H-HHH-----HHHHHhccCCCCeEEEEecHH
Confidence 999999 34444444444332211111111 11123343333322111 1 111 111222223578999999998
Q ss_pred HHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEE
Q psy14582 930 ETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVL 1009 (1689)
Q Consensus 930 ~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VL 1009 (1689)
.|..+...|.. . -.-.|++.||..++.+|..+.+.|+.|+|+||
T Consensus 399 Rak~L~~~L~~--~----------------------------------~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvL 442 (593)
T KOG0344|consen 399 RAKQLFEELEI--Y----------------------------------DNINVDVIHGERSQKQRDETMERFRIGKIWVL 442 (593)
T ss_pred HHHHHHHHhhh--c----------------------------------cCcceeeEecccchhHHHHHHHHHhccCeeEE
Confidence 88887776631 0 01236777999999999999999999999999
Q ss_pred EEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhc
Q psy14582 1010 VSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLG 1089 (1689)
Q Consensus 1010 VaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~G 1089 (1689)
|||++++||+|+.+|++| .++|+|. +...|+||+|
T Consensus 443 icTdll~RGiDf~gvn~V------------------------InyD~p~---------------------s~~syihrIG 477 (593)
T KOG0344|consen 443 ICTDLLARGIDFKGVNLV------------------------INYDFPQ---------------------SDLSYIHRIG 477 (593)
T ss_pred EehhhhhccccccCcceE------------------------EecCCCc---------------------hhHHHHHHhh
Confidence 999999999999999999 3455553 3779999999
Q ss_pred ccCCCCCCCccEEEEEecCCcHHHHHH
Q psy14582 1090 RAGRPQYDTKGEGVLITNHSELQYYLS 1116 (1689)
Q Consensus 1090 RAGR~g~d~~G~~iil~~~~~~~~y~~ 1116 (1689)
|+||+| ..|.||.|.+..+..+...
T Consensus 478 RtgRag--~~g~Aitfytd~d~~~ir~ 502 (593)
T KOG0344|consen 478 RTGRAG--RSGKAITFYTDQDMPRIRS 502 (593)
T ss_pred ccCCCC--CCcceEEEeccccchhhhh
Confidence 999999 9999999999876655443
No 54
>KOG0339|consensus
Probab=99.97 E-value=1.4e-31 Score=309.47 Aligned_cols=364 Identities=18% Similarity=0.246 Sum_probs=255.5
Q ss_pred CCCCCCCCCCccCCCCccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCC
Q psy14582 452 KPKPMGPDETLVPIDKLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINAD 529 (1689)
Q Consensus 452 ~~~p~~~~~~l~~~~~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~ 529 (1689)
.+.|..++++. +..+.+..+.. .|++|||||.+++|+++ +|+++|..|.||||||.||+.|++.++.....-.
T Consensus 218 ~~rpvtsfeh~----gfDkqLm~airk~Ey~kptpiq~qalptal-sgrdvigIAktgSgktaAfi~pm~~himdq~eL~ 292 (731)
T KOG0339|consen 218 PPRPVTSFEHF----GFDKQLMTAIRKSEYEKPTPIQCQALPTAL-SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK 292 (731)
T ss_pred CCCCcchhhhc----CchHHHHHHHhhhhcccCCccccccccccc-ccccchheeeccCcchhHHHHHHHHHhcchhhhc
Confidence 34555666555 45666666664 79999999999999999 9999999999999999999999999998653221
Q ss_pred CCCCCCCeEEEEEccchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHH
Q psy14582 530 GTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLL 609 (1689)
Q Consensus 530 g~~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l 609 (1689)
..+++.+||++|||+||.|++.+.++-- ..-+++++++=+..+.
T Consensus 293 ---~g~gPi~vilvPTrela~Qi~~eaKkf~-------------------------K~ygl~~v~~ygGgsk-------- 336 (731)
T KOG0339|consen 293 ---PGEGPIGVILVPTRELASQIFSEAKKFG-------------------------KAYGLRVVAVYGGGSK-------- 336 (731)
T ss_pred ---CCCCCeEEEEeccHHHHHHHHHHHHHhh-------------------------hhccceEEEeecCCcH--------
Confidence 2377899999999999999986543310 0011222222111111
Q ss_pred hhCCCCCceeecCCCccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCC
Q psy14582 610 RIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGG 689 (1689)
Q Consensus 610 ~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~ 689 (1689)
.++.+..+ . ++.||||| |+...|...-
T Consensus 337 -----------------------------~eQ~k~Lk-~-------------g~EivVaT--------PgRlid~Vkm-- 363 (731)
T KOG0339|consen 337 -----------------------------WEQSKELK-E-------------GAEIVVAT--------PGRLIDMVKM-- 363 (731)
T ss_pred -----------------------------HHHHHhhh-c-------------CCeEEEec--------hHHHHHHHHh--
Confidence 11111111 2 88999999 9933332221
Q ss_pred CcceeEEEEeCCCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHH
Q psy14582 690 SEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNV 769 (1689)
Q Consensus 690 ~e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~ 769 (1689)
T Consensus 364 -------------------------------------------------------------------------------- 363 (731)
T KOG0339|consen 364 -------------------------------------------------------------------------------- 363 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceE
Q psy14582 770 ALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRL 848 (1689)
Q Consensus 770 ~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~ri 848 (1689)
+++-...+.++|+||++.+.+ ..-+...+|.. ...++.|.
T Consensus 364 --------------------------------Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~-------hirpdrQt 404 (731)
T KOG0339|consen 364 --------------------------------KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQ-------HIRPDRQT 404 (731)
T ss_pred --------------------------------hcccceeeeEEEEechhhhhccccHHHHHHHHh-------hcCCcceE
Confidence 111111288999999998876 56666555543 45688999
Q ss_pred EEEecCCC-CHHHHHHHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCC
Q psy14582 849 VGLSATLP-NYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHS 927 (1689)
Q Consensus 849 V~lSATl~-n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~s 927 (1689)
++||||++ .++.+++-+-..+.+.+ .-+-......+.|.+..+..... .++. +...+.+....+.+||||..
T Consensus 405 llFsaTf~~kIe~lard~L~dpVrvV-qg~vgean~dITQ~V~V~~s~~~--Kl~w----l~~~L~~f~S~gkvlifVTK 477 (731)
T KOG0339|consen 405 LLFSATFKKKIEKLARDILSDPVRVV-QGEVGEANEDITQTVSVCPSEEK--KLNW----LLRHLVEFSSEGKVLIFVTK 477 (731)
T ss_pred EEeeccchHHHHHHHHHHhcCCeeEE-EeehhccccchhheeeeccCcHH--HHHH----HHHHhhhhccCCcEEEEEec
Confidence 99999999 67777776666654422 22222222345666666554322 2222 22334455567899999999
Q ss_pred hHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeE
Q psy14582 928 RKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQ 1007 (1689)
Q Consensus 928 rk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~ 1007 (1689)
+..++.++..|.-.+ +.|+..|+.|.+.+|..++..|+.+...
T Consensus 478 k~~~e~i~a~Lklk~-------------------------------------~~v~llhgdkdqa~rn~~ls~fKkk~~~ 520 (731)
T KOG0339|consen 478 KADAEEIAANLKLKG-------------------------------------FNVSLLHGDKDQAERNEVLSKFKKKRKP 520 (731)
T ss_pred cCCHHHHHHHhcccc-------------------------------------ceeeeecCchhhHHHHHHHHHHhhcCCc
Confidence 999999988776432 3456669999999999999999999999
Q ss_pred EEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHH
Q psy14582 1008 VLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQM 1087 (1689)
Q Consensus 1008 VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm 1087 (1689)
|||+|++++||+|||++..| | .||-. .++..+.||
T Consensus 521 VlvatDvaargldI~~ikTV-----------------v----------------------nyD~a------rdIdththr 555 (731)
T KOG0339|consen 521 VLVATDVAARGLDIPSIKTV-----------------V----------------------NYDFA------RDIDTHTHR 555 (731)
T ss_pred eEEEeeHhhcCCCcccccee-----------------e----------------------ccccc------chhHHHHHH
Confidence 99999999999999999888 2 23322 358899999
Q ss_pred hcccCCCCCCCccEEEEEecCCcHHHHHHHhh
Q psy14582 1088 LGRAGRPQYDTKGEGVLITNHSELQYYLSLLN 1119 (1689)
Q Consensus 1088 ~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 1119 (1689)
+||+||.| ..|.++.+.+..+..+.-.+.+
T Consensus 556 igrtgRag--~kGvayTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 556 IGRTGRAG--EKGVAYTLVTEKDAEFAGHLVN 585 (731)
T ss_pred hhhccccc--ccceeeEEechhhHHHhhHHHH
Confidence 99999999 7799999999988776655554
No 55
>KOG0350|consensus
Probab=99.97 E-value=1.1e-30 Score=303.41 Aligned_cols=185 Identities=21% Similarity=0.335 Sum_probs=131.6
Q ss_pred cceEEEEecCCC-CHHHHHHHhhcCCCccEEEec----CCCc-ccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCC
Q psy14582 845 DVRLVGLSATLP-NYKDVATLLRIKPETGLFYFD----NSFR-PVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGR 918 (1689)
Q Consensus 845 ~~riV~lSATl~-n~~dva~~L~~~~~~~~~~f~----~~~R-pvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~ 918 (1689)
+...+.+||||. .+..+.++--..|. +|... ..|+ |-.+.+..+.....-.. ..+|. +....+.
T Consensus 360 ~l~kL~~satLsqdP~Kl~~l~l~~Pr--l~~v~~~~~~ryslp~~l~~~~vv~~~~~kp-------l~~~~-lI~~~k~ 429 (620)
T KOG0350|consen 360 PLWKLVFSATLSQDPSKLKDLTLHIPR--LFHVSKPLIGRYSLPSSLSHRLVVTEPKFKP-------LAVYA-LITSNKL 429 (620)
T ss_pred hhHhhhcchhhhcChHHHhhhhcCCCc--eEEeecccceeeecChhhhhceeecccccch-------HhHHH-HHHHhhc
Confidence 344678889987 55666665433332 22221 2222 22344444443331111 01232 3344456
Q ss_pred CeEEEEeCChHHHHHHHHHHH-HhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHH
Q psy14582 919 NQLLVFVHSRKETGKTARAIR-DMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLV 997 (1689)
Q Consensus 919 ~~vLVFv~srk~~~~~a~~L~-~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~v 997 (1689)
.++|+|++|...+.+++..|. ..+.. ...+..+.|+++...|...
T Consensus 430 ~r~lcf~~S~~sa~Rl~~~L~v~~~~~----------------------------------~~~~s~~t~~l~~k~r~k~ 475 (620)
T KOG0350|consen 430 NRTLCFVNSVSSANRLAHVLKVEFCSD----------------------------------NFKVSEFTGQLNGKRRYKM 475 (620)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhccc----------------------------------cchhhhhhhhhhHHHHHHH
Confidence 899999999999999999887 22211 1112234889999999999
Q ss_pred HHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcce
Q psy14582 998 EDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWV 1077 (1689)
Q Consensus 998 e~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~ 1077 (1689)
.+.|+.|.++||||||+++||||+.+|+.| .++|+|++
T Consensus 476 l~~f~~g~i~vLIcSD~laRGiDv~~v~~V------------------------INYd~P~~------------------ 513 (620)
T KOG0350|consen 476 LEKFAKGDINVLICSDALARGIDVNDVDNV------------------------INYDPPAS------------------ 513 (620)
T ss_pred HHHHhcCCceEEEehhhhhcCCcccccceE------------------------eecCCCch------------------
Confidence 999999999999999999999999999999 57777766
Q ss_pred ecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhC
Q psy14582 1078 ELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNH 1120 (1689)
Q Consensus 1078 ~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 1120 (1689)
...|+||+||+||+| ..|.|+.+....+...|.++++.
T Consensus 514 ---~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 514 ---DKTYVHRAGRTARAG--QDGYAITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred ---hhHHHHhhccccccc--CCceEEEeeccccchHHHHHHHH
Confidence 789999999999999 88999999999998888888874
No 56
>KOG0334|consensus
Probab=99.97 E-value=6.7e-31 Score=330.95 Aligned_cols=347 Identities=22% Similarity=0.294 Sum_probs=246.0
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
++...+...++ ||..|||||.+|||.++ +|+++|+.|.||||||++|+||+++++.-.+..+ ..+|+-+|+++|
T Consensus 371 gl~~~il~tlkkl~y~k~~~IQ~qAiP~Im-sGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~---~gdGPi~li~aP 446 (997)
T KOG0334|consen 371 GLSSKILETLKKLGYEKPTPIQAQAIPAIM-SGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLE---EGDGPIALILAP 446 (997)
T ss_pred CchHHHHHHHHHhcCCCCcchhhhhcchhc-cCcceEEeeccCCccchhhhcchhhhhhcCCChh---hCCCceEEEEcC
Confidence 45555555554 99999999999999999 8999999999999999999999998887654432 225889999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
||+||.||...+.+-.+| -.+++++.-+-..-..++++.
T Consensus 447 trela~QI~r~~~kf~k~-------------------------l~ir~v~vygg~~~~~qiael---------------- 485 (997)
T KOG0334|consen 447 TRELAMQIHREVRKFLKL-------------------------LGIRVVCVYGGSGISQQIAEL---------------- 485 (997)
T ss_pred CHHHHHHHHHHHHHHHhh-------------------------cCceEEEecCCccHHHHHHHH----------------
Confidence 999999999665442211 112222211111111111111
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
. + .+.|+||| |+...|...
T Consensus 486 -----------------------k---------R---g~eIvV~t--------pGRmiD~l~------------------ 504 (997)
T KOG0334|consen 486 -----------------------K---------R---GAEIVVCT--------PGRMIDILC------------------ 504 (997)
T ss_pred -----------------------h---------c---CCceEEec--------cchhhhhHh------------------
Confidence 1 1 47899999 994444332
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
..+|+-.. +..
T Consensus 505 ---------------------------------------------------------~n~grvtn--------lrR---- 515 (997)
T KOG0334|consen 505 ---------------------------------------------------------ANSGRVTN--------LRR---- 515 (997)
T ss_pred ---------------------------------------------------------hcCCcccc--------ccc----
Confidence 12222111 000
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCC-HHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN-YKDVA 862 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dva 862 (1689)
+-.+|+||++.+.| ...|..-.|+ ....+..|.+.+|||+|. .+.+|
T Consensus 516 ------------------------~t~lv~deaDrmfdmgfePq~~~Ii-------~nlrpdrQtvlfSatfpr~m~~la 564 (997)
T KOG0334|consen 516 ------------------------VTYLVLDEADRMFDMGFEPQITRIL-------QNLRPDRQTVLFSATFPRSMEALA 564 (997)
T ss_pred ------------------------cceeeechhhhhheeccCcccchHH-------hhcchhhhhhhhhhhhhHHHHHHH
Confidence 56899999998887 4445433333 344788999999999994 67778
Q ss_pred HHhhcCCCccEEEecCCCcccceEEEEEeec-hhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHh
Q psy14582 863 TLLRIKPETGLFYFDNSFRPVALEQQYIGVT-EKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDM 941 (1689)
Q Consensus 863 ~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~-~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~ 941 (1689)
.-+...|...++. ..+.---.+++.+..+. +..+..++. +.+.+.....++||||.+...|..+.+.|...
T Consensus 565 ~~vl~~Pveiiv~-~~svV~k~V~q~v~V~~~e~eKf~kL~-------eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a 636 (997)
T KOG0334|consen 565 RKVLKKPVEIIVG-GRSVVCKEVTQVVRVCAIENEKFLKLL-------ELLGERYEDGKTIIFVDKQEKADALLRDLQKA 636 (997)
T ss_pred HHhhcCCeeEEEc-cceeEeccceEEEEEecCchHHHHHHH-------HHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc
Confidence 7777666552222 11111123566666665 333333222 22223344789999999999999999999876
Q ss_pred hhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCC
Q psy14582 942 CLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNL 1021 (1689)
Q Consensus 942 ~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDI 1021 (1689)
+..+..+ |||.++.+|..+++.|++|.+.+||||++++||+|+
T Consensus 637 g~~~~sl-------------------------------------HGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv 679 (997)
T KOG0334|consen 637 GYNCDSL-------------------------------------HGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDV 679 (997)
T ss_pred Ccchhhh-------------------------------------cCCCchHHHHhHHHHHhccCceEEEehhhhhccccc
Confidence 5554433 999999999999999999999999999999999999
Q ss_pred CCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1022 PAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1022 p~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
+.+.+| +++++|+| ..+|+||+||+||+| ..|.
T Consensus 680 ~~l~Lv------------------------vnyd~pnh---------------------~edyvhR~gRTgrag--rkg~ 712 (997)
T KOG0334|consen 680 KELILV------------------------VNYDFPNH---------------------YEDYVHRVGRTGRAG--RKGA 712 (997)
T ss_pred ccceEE------------------------EEcccchh---------------------HHHHHHHhcccccCC--ccce
Confidence 999998 67888888 678999999999999 8999
Q ss_pred EEEEecCCcH
Q psy14582 1102 GVLITNHSEL 1111 (1689)
Q Consensus 1102 ~iil~~~~~~ 1111 (1689)
|+.|..+.+.
T Consensus 713 AvtFi~p~q~ 722 (997)
T KOG0334|consen 713 AVTFITPDQL 722 (997)
T ss_pred eEEEeChHHh
Confidence 9999988443
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=3.8e-29 Score=326.71 Aligned_cols=322 Identities=18% Similarity=0.226 Sum_probs=207.9
Q ss_pred hhccccCCcee-ecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceE
Q psy14582 809 VGNFGKDEIHL-LHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALE 886 (1689)
Q Consensus 809 v~liIiDEiHl-l~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~ 886 (1689)
+++|||||+|. ..+ +.+.. . + ........++.|+|+||||+++ ..+.++++..+ ++. ..-|..|++
T Consensus 114 v~~VIiDEaHER~L~~Dl~L~--l-l---~~i~~~lr~dlqlIlmSATl~~-~~l~~~l~~~~---vI~--~~gr~~pVe 181 (819)
T TIGR01970 114 VGALIFDEFHERSLDADLGLA--L-A---LDVQSSLREDLKILAMSATLDG-ERLSSLLPDAP---VVE--SEGRSFPVE 181 (819)
T ss_pred CCEEEEeccchhhhccchHHH--H-H---HHHHHhcCCCceEEEEeCCCCH-HHHHHHcCCCc---EEE--ecCcceeee
Confidence 89999999994 332 32211 1 1 1111234578999999999985 34777775322 222 233556777
Q ss_pred EEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhh
Q psy14582 887 QQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEA 966 (1689)
Q Consensus 887 ~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~ 966 (1689)
++|.......... ..+...+.. ++.. ..+++|||++++.++..++..|.+...
T Consensus 182 ~~y~~~~~~~~~~--~~v~~~l~~-~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~----------------------- 234 (819)
T TIGR01970 182 IRYLPLRGDQRLE--DAVSRAVEH-ALAS-ETGSILVFLPGQAEIRRVQEQLAERLD----------------------- 234 (819)
T ss_pred eEEeecchhhhHH--HHHHHHHHH-HHHh-cCCcEEEEECCHHHHHHHHHHHHhhcC-----------------------
Confidence 7776554332211 111112222 2222 257899999999999999998865210
Q ss_pred hhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEE
Q psy14582 967 DQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVS 1046 (1689)
Q Consensus 967 ~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVa 1046 (1689)
....+..+||+|++.+|..+++.|++|..+||||||++++|||||+|++| |-
T Consensus 235 -----------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~V-----------------ID 286 (819)
T TIGR01970 235 -----------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVV-----------------ID 286 (819)
T ss_pred -----------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEE-----------------EE
Confidence 01235667999999999999999999999999999999999999999999 42
Q ss_pred cccccccCCCCCceEEEeceeeecCCCCc----ceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCcC
Q psy14582 1047 TATLAWGVNLPAHTVIIKGTQIYNPEKGR----WVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQL 1122 (1689)
Q Consensus 1047 T~TLa~GvNLPa~~VII~gt~~yd~~~~~----~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~ 1122 (1689)
.++|-. ..||+..|. ...+|..++.||+|||||. ..|.||-+.+..+ |..+...+.
T Consensus 287 -------~Gl~r~-------~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~---~~~l~~~~~ 346 (819)
T TIGR01970 287 -------SGLARV-------ARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ---HQRLPAQDE 346 (819)
T ss_pred -------cCcccc-------cccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH---HHhhhcCCC
Confidence 333332 457777663 3468999999999999998 4899999998654 333333332
Q ss_pred C--cccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCChhhhhhhHHHHHHHHHHHH
Q psy14582 1123 P--VESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLE 1200 (1689)
Q Consensus 1123 p--ieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~~lv~~al~~L~ 1200 (1689)
| ..+.|. ++++ ....+- ..+|.- .+++...-.+.+..|+..|.
T Consensus 347 PEI~r~~L~---------~~~L----------~l~~~g------~~~~~~----------~~~l~~P~~~~i~~a~~~L~ 391 (819)
T TIGR01970 347 PEILQADLS---------GLAL----------ELAQWG------AKDPSD----------LRWLDAPPSVALAAARQLLQ 391 (819)
T ss_pred cceeccCcH---------HHHH----------HHHHcC------CCChhh----------CCCCCCcCHHHHHHHHHHHH
Confidence 3 122211 1111 111100 011111 12233333456899999999
Q ss_pred HcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcc
Q psy14582 1201 RSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGE 1258 (1689)
Q Consensus 1201 ~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~E 1258 (1689)
..|+|+-+ + .+|++|+.+|.++++|...+++.......+. .+.+.|.+.-+|
T Consensus 392 ~lgald~~---~--~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~-~~~~~iaa~ls~ 443 (819)
T TIGR01970 392 RLGALDAQ---G--RLTAHGKAMAALGCHPRLAAMLLSAHSTGLA-ALACDLAALLEE 443 (819)
T ss_pred HCCCCCCC---C--CcCHHHHHHHhcCCCHHHHHHHHHhhhcCCH-HHHHHHHHHHcC
Confidence 99999733 2 5799999999999999999999887655443 345555554433
No 58
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=5.2e-29 Score=328.34 Aligned_cols=196 Identities=20% Similarity=0.250 Sum_probs=132.9
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQ 888 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~ 888 (1689)
++++|+||+|.++.. . +..+.....++++++||||+. .+.+...+.......+....+. ...|+...
T Consensus 574 L~llVIDEahrfgv~----~-------~~~L~~~~~~~~vL~~SATpi-prtl~~~l~g~~d~s~I~~~p~-~R~~V~t~ 640 (926)
T TIGR00580 574 LGLLIIDEEQRFGVK----Q-------KEKLKELRTSVDVLTLSATPI-PRTLHMSMSGIRDLSIIATPPE-DRLPVRTF 640 (926)
T ss_pred CCEEEeecccccchh----H-------HHHHHhcCCCCCEEEEecCCC-HHHHHHHHhcCCCcEEEecCCC-CccceEEE
Confidence 889999999986421 1 111233456789999999964 2444333322211112222222 22355555
Q ss_pred EEeechhhHHHHHHHhhHHHHHHHH-HHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhh
Q psy14582 889 YIGVTEKKALKRFQVMNDIVYEKVM-EHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAD 967 (1689)
Q Consensus 889 ~~~~~~~~~~~~~~~m~~~~~~~i~-~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~ 967 (1689)
+...... .+...+. +...+++++|||+++..+..++..|.....
T Consensus 641 v~~~~~~-----------~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p------------------------ 685 (926)
T TIGR00580 641 VMEYDPE-----------LVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVP------------------------ 685 (926)
T ss_pred EEecCHH-----------HHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCC------------------------
Confidence 4433211 1111121 223468999999999999998888765210
Q ss_pred hccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEc
Q psy14582 968 QVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVST 1047 (1689)
Q Consensus 968 ~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT 1047 (1689)
...++.+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++| |
T Consensus 686 -----------~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~V-----------------I-- 735 (926)
T TIGR00580 686 -----------EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTI-----------------I-- 735 (926)
T ss_pred -----------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEE-----------------E--
Confidence 1357888999999999999999999999999999999999999999988 3
Q ss_pred ccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCC
Q psy14582 1048 ATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS 1109 (1689)
Q Consensus 1048 ~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~ 1109 (1689)
.|++.. ++..+|.||+||+||.| ..|.|++++...
T Consensus 736 --------------------i~~a~~-----~gls~l~Qr~GRvGR~g--~~g~aill~~~~ 770 (926)
T TIGR00580 736 --------------------IERADK-----FGLAQLYQLRGRVGRSK--KKAYAYLLYPHQ 770 (926)
T ss_pred --------------------EecCCC-----CCHHHHHHHhcCCCCCC--CCeEEEEEECCc
Confidence 122211 34678999999999998 899999998654
No 59
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.97 E-value=1.2e-28 Score=322.97 Aligned_cols=308 Identities=17% Similarity=0.200 Sum_probs=200.8
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQ 888 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~ 888 (1689)
+++||+||+|...-..+-.+..+ ........++.|+|+||||+++ +.+++++...+ ++. ...|..|++++
T Consensus 117 v~~IIlDEaHER~l~~Dl~L~ll----~~i~~~lr~~lqlilmSATl~~-~~l~~~~~~~~---~I~--~~gr~~pV~~~ 186 (812)
T PRK11664 117 VGLVILDEFHERSLQADLALALL----LDVQQGLRDDLKLLIMSATLDN-DRLQQLLPDAP---VIV--SEGRSFPVERR 186 (812)
T ss_pred CcEEEEcCCCccccccchHHHHH----HHHHHhCCccceEEEEecCCCH-HHHHHhcCCCC---EEE--ecCccccceEE
Confidence 89999999995321111112211 1222345678999999999985 45777775322 222 23355677787
Q ss_pred EEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhh
Q psy14582 889 YIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQ 968 (1689)
Q Consensus 889 ~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~ 968 (1689)
|.......+.. ..+...+.. ++.. ..+++|||+++++++..++..|......
T Consensus 187 y~~~~~~~~~~--~~v~~~l~~-~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~------------------------ 238 (812)
T PRK11664 187 YQPLPAHQRFD--EAVARATAE-LLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVAS------------------------ 238 (812)
T ss_pred eccCchhhhHH--HHHHHHHHH-HHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccC------------------------
Confidence 77654332211 111111222 2221 3578999999999999999998752100
Q ss_pred ccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcc
Q psy14582 969 VKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTA 1048 (1689)
Q Consensus 969 ~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~ 1048 (1689)
...+..+||+|+..+|..++..|++|+.+||||||++++|||||+|++| |-
T Consensus 239 ----------~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~V-----------------ID-- 289 (812)
T PRK11664 239 ----------DVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLV-----------------VD-- 289 (812)
T ss_pred ----------CceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEE-----------------EE--
Confidence 1235667999999999999999999999999999999999999999999 43
Q ss_pred cccccCCCCCceEEEeceeeecCCCCc----ceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCcCC-
Q psy14582 1049 TLAWGVNLPAHTVIIKGTQIYNPEKGR----WVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLP- 1123 (1689)
Q Consensus 1049 TLa~GvNLPa~~VII~gt~~yd~~~~~----~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p- 1123 (1689)
..+|.. ..||+..|. ...+|-.++.||+|||||.+ .|.||.+.+..+ |..+...+.|
T Consensus 290 -----~Gl~r~-------~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~t~~~---~~~l~~~~~PE 351 (812)
T PRK11664 290 -----SGLERV-------ARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE---PGICLHLYSKEQ---AERAAAQSEPE 351 (812)
T ss_pred -----CCCccc-------ccccccCCcceeEEEeechhhhhhhccccCCCC---CcEEEEecCHHH---HhhCccCCCCc
Confidence 223322 458877773 23578899999999999984 899999988643 3333333333
Q ss_pred -cccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCChhhhhhhHHHHHHHHHHHHHc
Q psy14582 1124 -VESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERS 1202 (1689)
Q Consensus 1124 -ieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~~lv~~al~~L~~~ 1202 (1689)
..+.|. ++++ .... +|+.. ....+++...-.+.+..|+..|...
T Consensus 352 I~r~dL~---------~~~L----------~l~~--------------~g~~~--~~~~~~ld~P~~~~~~~A~~~L~~l 396 (812)
T PRK11664 352 ILHSDLS---------GLLL----------ELLQ--------------WGCHD--PAQLSWLDQPPAAALAAAKRLLQQL 396 (812)
T ss_pred eeccchH---------HHHH----------HHHH--------------cCCCC--HHhCCCCCCCCHHHHHHHHHHHHHC
Confidence 112211 1111 1111 11110 0011223333446789999999999
Q ss_pred CCceeccCCCceeeccccccceecccchhhHHHHHHhhC
Q psy14582 1203 GLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLK 1241 (1689)
Q Consensus 1203 ~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~ 1241 (1689)
|+|+-+ ..+|++|+.+|.++++|...+++.....
T Consensus 397 gald~~-----g~lT~~G~~m~~lp~~Prla~~ll~a~~ 430 (812)
T PRK11664 397 GALDGQ-----GRLTARGRKMAALGNDPRLAAMLVAAKE 430 (812)
T ss_pred CCCCCC-----CCcCHHHHHHHhcCCchHHHHHHHHHHh
Confidence 999733 3689999999999999999999887654
No 60
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=1.9e-28 Score=329.40 Aligned_cols=196 Identities=20% Similarity=0.244 Sum_probs=133.3
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
++++||||+|.++.. .. ..+.....++++++||||+. ....++.....++. .+...+ ....++.+
T Consensus 723 L~lLVIDEahrfG~~---~~--------e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~--~I~~~p-~~r~~v~~ 788 (1147)
T PRK10689 723 LGLLIVDEEHRFGVR---HK--------ERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLS--IIATPP-ARRLAVKT 788 (1147)
T ss_pred CCEEEEechhhcchh---HH--------HHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcE--EEecCC-CCCCCceE
Confidence 889999999987421 11 11234567899999999965 33333332222221 222222 22234544
Q ss_pred EEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhh
Q psy14582 888 QYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAD 967 (1689)
Q Consensus 888 ~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~ 967 (1689)
.+..+.... . ...+ +.+...+++++|||+++..+..++..|.....
T Consensus 789 ~~~~~~~~~-~------k~~i---l~el~r~gqv~vf~n~i~~ie~la~~L~~~~p------------------------ 834 (1147)
T PRK10689 789 FVREYDSLV-V------REAI---LREILRGGQVYYLYNDVENIQKAAERLAELVP------------------------ 834 (1147)
T ss_pred EEEecCcHH-H------HHHH---HHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC------------------------
Confidence 443332111 0 0111 11223468999999999999999888875211
Q ss_pred hccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEc
Q psy14582 968 QVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVST 1047 (1689)
Q Consensus 968 ~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT 1047 (1689)
..+++.+||+|++.+|..++..|++|+++|||||+++++|+|+|++++| |.
T Consensus 835 -----------~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~V-----------------Ii- 885 (1147)
T PRK10689 835 -----------EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI-----------------II- 885 (1147)
T ss_pred -----------CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEE-----------------EE-
Confidence 2367888999999999999999999999999999999999999999998 31
Q ss_pred ccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCC
Q psy14582 1048 ATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS 1109 (1689)
Q Consensus 1048 ~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~ 1109 (1689)
+++. .++...|+||+||+||.| ..|.|++++..+
T Consensus 886 ---------------------~~ad-----~fglaq~~Qr~GRvGR~g--~~g~a~ll~~~~ 919 (1147)
T PRK10689 886 ---------------------ERAD-----HFGLAQLHQLRGRVGRSH--HQAYAWLLTPHP 919 (1147)
T ss_pred ---------------------ecCC-----CCCHHHHHHHhhccCCCC--CceEEEEEeCCC
Confidence 1110 134678999999999998 889999998654
No 61
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=6e-28 Score=315.12 Aligned_cols=202 Identities=24% Similarity=0.293 Sum_probs=124.0
Q ss_pred hhccccCCceeecCC-chhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d~-rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
++++|+||+|.++.. +. .+......+++++||||+.. +.++..+..........-.+..| .|+..
T Consensus 384 l~lvVIDE~Hrfg~~qr~------------~l~~~~~~~~iL~~SATp~p-rtl~~~~~g~~~~s~i~~~p~~r-~~i~~ 449 (681)
T PRK10917 384 LGLVIIDEQHRFGVEQRL------------ALREKGENPHVLVMTATPIP-RTLAMTAYGDLDVSVIDELPPGR-KPITT 449 (681)
T ss_pred cceEEEechhhhhHHHHH------------HHHhcCCCCCEEEEeCCCCH-HHHHHHHcCCCceEEEecCCCCC-CCcEE
Confidence 889999999987431 11 11223446889999999642 33332222211111111111112 24544
Q ss_pred EEEeechhhHHHHHHHhhHHHHHHHHHH-hCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhh
Q psy14582 888 QYIGVTEKKALKRFQVMNDIVYEKVMEH-AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEA 966 (1689)
Q Consensus 888 ~~~~~~~~~~~~~~~~m~~~~~~~i~~~-~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~ 966 (1689)
.+....... .+++.+.+. ..+++++|||+...+...+. +.. .+..
T Consensus 450 ~~~~~~~~~----------~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~--~~~------------------~~~~---- 495 (681)
T PRK10917 450 VVIPDSRRD----------EVYERIREEIAKGRQAYVVCPLIEESEKLD--LQS------------------AEET---- 495 (681)
T ss_pred EEeCcccHH----------HHHHHHHHHHHcCCcEEEEEcccccccchh--HHH------------------HHHH----
Confidence 444322111 122222222 34679999999765443210 000 0000
Q ss_pred hhccchhhhccc-CCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEE
Q psy14582 967 DQVKNGELRDLL-PYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLV 1045 (1689)
Q Consensus 967 ~~~~~~~L~~~l-~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLV 1045 (1689)
...|...+ ...++++||+|++.+|..+++.|++|+++|||||+++++|+|+|++++| |
T Consensus 496 ----~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~V-----------------I 554 (681)
T PRK10917 496 ----YEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVM-----------------V 554 (681)
T ss_pred ----HHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEE-----------------E
Confidence 00111122 2578999999999999999999999999999999999999999999988 3
Q ss_pred EcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecC
Q psy14582 1046 STATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNH 1108 (1689)
Q Consensus 1046 aT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~ 1108 (1689)
.|+++. ++...+.||+||+||.| ..|.|+++++.
T Consensus 555 ----------------------i~~~~r-----~gls~lhQ~~GRvGR~g--~~g~~ill~~~ 588 (681)
T PRK10917 555 ----------------------IENAER-----FGLAQLHQLRGRVGRGA--AQSYCVLLYKD 588 (681)
T ss_pred ----------------------EeCCCC-----CCHHHHHHHhhcccCCC--CceEEEEEECC
Confidence 234332 24678999999999998 78999999964
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=7.6e-28 Score=312.32 Aligned_cols=205 Identities=25% Similarity=0.289 Sum_probs=124.1
Q ss_pred hhccccCCceeecCC-chhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d~-rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
++++|+||+|.++.. +....+. .......++++||||+.. +.++..+............+..| .|+..
T Consensus 358 l~lvVIDEaH~fg~~qr~~l~~~---------~~~~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~r-~~i~~ 426 (630)
T TIGR00643 358 LALVIIDEQHRFGVEQRKKLREK---------GQGGFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPGR-KPITT 426 (630)
T ss_pred cceEEEechhhccHHHHHHHHHh---------cccCCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCCC-CceEE
Confidence 889999999987542 2211110 000126789999999643 33332221111110111011111 24444
Q ss_pred EEEeechhhHHHHHHHhhHHHHHHHHHH-hCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhh
Q psy14582 888 QYIGVTEKKALKRFQVMNDIVYEKVMEH-AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEA 966 (1689)
Q Consensus 888 ~~~~~~~~~~~~~~~~m~~~~~~~i~~~-~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~ 966 (1689)
.+...... ..++..+.+. ..+++++|||+...+...+.. .. .+.+.
T Consensus 427 ~~~~~~~~----------~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~--~~------------------a~~~~--- 473 (630)
T TIGR00643 427 VLIKHDEK----------DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDL--KA------------------AEALY--- 473 (630)
T ss_pred EEeCcchH----------HHHHHHHHHHHHhCCcEEEEEccccccccchH--HH------------------HHHHH---
Confidence 44332211 1233344333 346899999998755433200 00 00000
Q ss_pred hhccchhhhcc-cCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEE
Q psy14582 967 DQVKNGELRDL-LPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLV 1045 (1689)
Q Consensus 967 ~~~~~~~L~~~-l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLV 1045 (1689)
..|++. -...++++||+|++.+|..+++.|++|+++|||||+++++|+|+|++++| |
T Consensus 474 -----~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~V-----------------I 531 (630)
T TIGR00643 474 -----ERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVM-----------------V 531 (630)
T ss_pred -----HHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEE-----------------E
Confidence 011111 23568999999999999999999999999999999999999999999887 2
Q ss_pred EcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecC
Q psy14582 1046 STATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNH 1108 (1689)
Q Consensus 1046 aT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~ 1108 (1689)
.|++.. ++...|.||+|||||.| ..|.|++++..
T Consensus 532 ----------------------i~~~~r-----~gls~lhQ~~GRvGR~g--~~g~~il~~~~ 565 (630)
T TIGR00643 532 ----------------------IEDAER-----FGLSQLHQLRGRVGRGD--HQSYCLLVYKN 565 (630)
T ss_pred ----------------------EeCCCc-----CCHHHHHHHhhhcccCC--CCcEEEEEECC
Confidence 244332 35778999999999998 78999999843
No 63
>KOG4284|consensus
Probab=99.96 E-value=3.8e-29 Score=295.62 Aligned_cols=208 Identities=22% Similarity=0.319 Sum_probs=153.4
Q ss_pred hhccccCCceeecCC--chhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHHH-HHHHhhcCCCccEEEecCC-Cccc
Q psy14582 809 VGNFGKDEIHLLHDE--RGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYKD-VATLLRIKPETGLFYFDNS-FRPV 883 (1689)
Q Consensus 809 v~liIiDEiHll~d~--rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~d-va~~L~~~~~~~~~~f~~~-~Rpv 883 (1689)
++++|+||++-|.++ ....+..| +.+++...|++++|||.| |... ++++++ ++. +.-|..+ ..-.
T Consensus 168 vrlfVLDEADkL~~t~sfq~~In~i-------i~slP~~rQv~a~SATYp~nLdn~Lsk~mr-dp~--lVr~n~~d~~L~ 237 (980)
T KOG4284|consen 168 VRLFVLDEADKLMDTESFQDDINII-------INSLPQIRQVAAFSATYPRNLDNLLSKFMR-DPA--LVRFNADDVQLF 237 (980)
T ss_pred eeEEEeccHHhhhchhhHHHHHHHH-------HHhcchhheeeEEeccCchhHHHHHHHHhc-ccc--eeecccCCceee
Confidence 899999999988873 22223322 456788899999999999 5544 445554 332 2223222 1223
Q ss_pred ceEEEEEeechh-hHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHH
Q psy14582 884 ALEQQYIGVTEK-KALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVL 962 (1689)
Q Consensus 884 pL~~~~~~~~~~-~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l 962 (1689)
.++|++...... .....+..+.+.+ ..+....+-.|+||||+....|+.+|..|...+..+
T Consensus 238 GikQyv~~~~s~nnsveemrlklq~L-~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~----------------- 299 (980)
T KOG4284|consen 238 GIKQYVVAKCSPNNSVEEMRLKLQKL-THVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDV----------------- 299 (980)
T ss_pred chhheeeeccCCcchHHHHHHHHHHH-HHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCe-----------------
Confidence 467777665443 3333444433332 334555667899999999999999999987654433
Q ss_pred HHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccce
Q psy14582 963 RTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQ 1042 (1689)
Q Consensus 963 ~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~ 1042 (1689)
.+..|.|++.+|..+.+.++.-+.+|||+||+.+||||-++|++|
T Consensus 300 --------------------~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLV--------------- 344 (980)
T KOG4284|consen 300 --------------------TFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLV--------------- 344 (980)
T ss_pred --------------------EEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceE---------------
Confidence 334899999999999999999999999999999999999999999
Q ss_pred EEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcH
Q psy14582 1043 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL 1111 (1689)
Q Consensus 1043 vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~ 1111 (1689)
+++|.|++ -..|+||+|||||.| ..|.+|.++...+.
T Consensus 345 ---------VNiD~p~d---------------------~eTY~HRIGRAgRFG--~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 345 ---------VNIDAPAD---------------------EETYFHRIGRAGRFG--AHGAAVTLLEDERE 381 (980)
T ss_pred ---------EecCCCcc---------------------hHHHHHHhhhccccc--ccceeEEEeccchh
Confidence 67888877 568999999999988 89999998877543
No 64
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=4e-27 Score=277.32 Aligned_cols=123 Identities=23% Similarity=0.427 Sum_probs=98.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHH
Q psy14582 918 RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLV 997 (1689)
Q Consensus 918 ~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~v 997 (1689)
+.++|||++.|..++.++..|...+.... ..|+.. +=.-|..||++.++..+
T Consensus 366 ~~RvIVFT~yRdTae~i~~~L~~~~~~~~--~rFiGQ--------------------------a~r~~~~GMsQkeQ~ei 417 (542)
T COG1111 366 DSRVIVFTEYRDTAEEIVNFLKKIGIKAR--VRFIGQ--------------------------ASREGDKGMSQKEQKEI 417 (542)
T ss_pred CceEEEEehhHhHHHHHHHHHHhcCCcce--eEEeec--------------------------cccccccccCHHHHHHH
Confidence 45899999999999999999887655433 233321 11123589999999999
Q ss_pred HHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcce
Q psy14582 998 EDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWV 1077 (1689)
Q Consensus 998 e~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~ 1077 (1689)
.+.|++|..+|||||+++++|+|||+|++| || |+|-
T Consensus 418 I~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlV-----------------if----------------------YEpv----- 453 (542)
T COG1111 418 IDQFRKGEYNVLVATSVGEEGLDIPEVDLV-----------------IF----------------------YEPV----- 453 (542)
T ss_pred HHHHhcCCceEEEEcccccccCCCCcccEE-----------------EE----------------------ecCC-----
Confidence 999999999999999999999999999999 54 7664
Q ss_pred ecCHHHHHHHhcccCCCCCCCccEEEEEecCC--cHHHHHH
Q psy14582 1078 ELGALDVLQMLGRAGRPQYDTKGEGVLITNHS--ELQYYLS 1116 (1689)
Q Consensus 1078 ~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~--~~~~y~~ 1116 (1689)
.|...++||.||+||. +.|.++++.+.+ +..||.+
T Consensus 454 -pSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~ 490 (542)
T COG1111 454 -PSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYS 490 (542)
T ss_pred -cHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHH
Confidence 3678899999999996 689999998876 4555544
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.95 E-value=2e-27 Score=311.60 Aligned_cols=357 Identities=20% Similarity=0.267 Sum_probs=242.9
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
|...|+++|.+|+..+. +|+|+||++|||||||.+|++||+.++.+.. ..++|||.||+|||+.|.+.|.
T Consensus 67 g~~~lY~HQ~~A~~~~~-~G~~vvVtTgTgSGKTe~FllPIld~~l~~~---------~a~AL~lYPtnALa~DQ~~rl~ 136 (851)
T COG1205 67 GIERLYSHQVDALRLIR-EGRNVVVTTGTGSGKTESFLLPILDHLLRDP---------SARALLLYPTNALANDQAERLR 136 (851)
T ss_pred ccccccHHHHHHHHHHH-CCCCEEEECCCCCchhHHHHHHHHHHHhhCc---------CccEEEEechhhhHhhHHHHHH
Confidence 78889999999998777 8999999999999999999999999998652 2389999999999999997664
Q ss_pred ccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCccccceeEEEEec
Q psy14582 558 KDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVT 637 (1689)
Q Consensus 558 kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~ 637 (1689)
+-. ...+..+++. .+++
T Consensus 137 ~~~-----------------------~~~~~~v~~~-------------------------~y~G--------------- 153 (851)
T COG1205 137 ELI-----------------------SDLPGKVTFG-------------------------RYTG--------------- 153 (851)
T ss_pred HHH-----------------------HhCCCcceee-------------------------eecC---------------
Confidence 422 0001111111 1111
Q ss_pred hhhHHHHH-HHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccc-cccCCCcceeEEEEeCCCCcccchhhhhhhc
Q psy14582 638 EKKALKRF-QVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDE-KLHGGSEGFWILVEDVDSEVVLHHEYFLLKS 715 (1689)
Q Consensus 638 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~-~~~g~~e~f~i~veD~d~~~il~~e~~~l~~ 715 (1689)
+..-.+. ++. .+.++||+++ |+ .|+. ..+.
T Consensus 154 -dt~~~~r~~~~-----------~~pp~IllTN--------pd-MLh~~llr~--------------------------- 185 (851)
T COG1205 154 -DTPPEERRAII-----------RNPPDILLTN--------PD-MLHYLLLRN--------------------------- 185 (851)
T ss_pred -CCChHHHHHHH-----------hCCCCEEEeC--------HH-HHHHHhccC---------------------------
Confidence 2222222 111 2278899999 99 5554 2220
Q ss_pred cccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEE
Q psy14582 716 RYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKI 795 (1689)
Q Consensus 716 ~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kv 795 (1689)
.++| ..+
T Consensus 186 ----------------------------~~~~---------------------~~~------------------------ 192 (851)
T COG1205 186 ----------------------------HDAW---------------------LWL------------------------ 192 (851)
T ss_pred ----------------------------cchH---------------------HHH------------------------
Confidence 0011 000
Q ss_pred EEEccchhHHHHHhhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEE
Q psy14582 796 IYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFY 875 (1689)
Q Consensus 796 VylaP~r~L~~q~v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~ 875 (1689)
..+ +++||+||+|.+.+-.|.-+..++.|+++.+...+.+.++|+.|||+.|..+++.-+...... ..
T Consensus 193 ---------~~~-Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~--~~ 260 (851)
T COG1205 193 ---------LRN-LKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFE--VP 260 (851)
T ss_pred ---------Hhc-CcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcce--ee
Confidence 011 889999999999999999999999999999988888999999999999988888766554322 11
Q ss_pred ecCCCcccceEEEEEeechhhHHHHH---HHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhh
Q psy14582 876 FDNSFRPVALEQQYIGVTEKKALKRF---QVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFL 952 (1689)
Q Consensus 876 f~~~~RpvpL~~~~~~~~~~~~~~~~---~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl 952 (1689)
++.+..|-.....+..-+........ +.....-.-.-.....+-++|+|+.+|+.++.+............
T Consensus 261 v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~------ 334 (851)
T COG1205 261 VDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG------ 334 (851)
T ss_pred ccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc------
Confidence 44444555544444433311111110 111111110111123467999999999999998765554322111
Q ss_pred hcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhH
Q psy14582 953 REGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLV 1032 (1689)
Q Consensus 953 ~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~ 1032 (1689)
..+..-+..|+|||.+.+|..++..|+.|++.++++|+.++-|+||++++.|
T Consensus 335 -----------------------~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldav----- 386 (851)
T COG1205 335 -----------------------GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAV----- 386 (851)
T ss_pred -----------------------hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhH-----
Confidence 0123447889999999999999999999999999999999999999999988
Q ss_pred HHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHH
Q psy14582 1033 EDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQ 1112 (1689)
Q Consensus 1033 ~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~ 1112 (1689)
|+.. +|.+ +..++.||+|||||.+ ..+..+++...+-.+
T Consensus 387 ------------i~~g-------~P~~--------------------s~~~~~Q~~GRaGR~~--~~~l~~~v~~~~~~d 425 (851)
T COG1205 387 ------------IAYG-------YPGV--------------------SVLSFRQRAGRAGRRG--QESLVLVVLRSDPLD 425 (851)
T ss_pred ------------hhcC-------CCCc--------------------hHHHHHHhhhhccCCC--CCceEEEEeCCCccc
Confidence 4321 2221 5789999999999998 566666666654443
Q ss_pred -HHH
Q psy14582 1113 -YYL 1115 (1689)
Q Consensus 1113 -~y~ 1115 (1689)
+|.
T Consensus 426 ~yy~ 429 (851)
T COG1205 426 SYYL 429 (851)
T ss_pred hhhh
Confidence 443
No 66
>KOG0327|consensus
Probab=99.95 E-value=3.2e-28 Score=278.13 Aligned_cols=342 Identities=22% Similarity=0.326 Sum_probs=237.9
Q ss_pred CccHHHHHhc-c-CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAF-E-DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f-~-g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+|++.+...+ . ||++|+.||+.|++++. .|.|+++.|++|+|||.+|.+++++.+-.. .....|+++||
T Consensus 32 ~L~e~LLrgiy~yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~iLq~iD~~--------~ke~qalilaP 102 (397)
T KOG0327|consen 32 NLKESLLRGIYAYGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISILQQIDMS--------VKETQALILAP 102 (397)
T ss_pred CCCHHHHhHHHhhccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHHHHhhcCcc--------hHHHHHHHhcc
Confidence 6776655444 4 99999999999999888 899999999999999999999999987432 23457999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
||+||+|+...+..-..+ -+. ..++|... ..
T Consensus 103 treLa~qi~~v~~~lg~~-------------------------~~~---~v~~~igg---------------------~~ 133 (397)
T KOG0327|consen 103 TRELAQQIQKVVRALGDH-------------------------MDV---SVHACIGG---------------------TN 133 (397)
T ss_pred hHHHHHHHHHHHHhhhcc-------------------------cce---eeeeecCc---------------------cc
Confidence 999999998333210000 000 01111110 00
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
. . ...+++. ...++|+|.| |++..+.+-+|.
T Consensus 134 ~-------------~--~~~~~i~-----------~~~~hivvGT--------pgrV~dml~~~~--------------- 164 (397)
T KOG0327|consen 134 V-------------R--REDQALL-----------KDKPHIVVGT--------PGRVFDMLNRGS--------------- 164 (397)
T ss_pred c-------------h--hhhhhhh-----------ccCceeecCC--------chhHHHhhcccc---------------
Confidence 0 0 0001111 0157999999 996555543310
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
+
T Consensus 165 ---------------------------------------------------------------l---------------- 165 (397)
T KOG0327|consen 165 ---------------------------------------------------------------L---------------- 165 (397)
T ss_pred ---------------------------------------------------------------c----------------
Confidence 0
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYKDVA 862 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~dva 862 (1689)
-..-++++++||++.+.. ..-..+..++. ..++++|++.+|||+| ...+++
T Consensus 166 --------------------~~~~iKmfvlDEaDEmLs~gfkdqI~~if~-------~lp~~vQv~l~SAT~p~~vl~vt 218 (397)
T KOG0327|consen 166 --------------------STDGIKMFVLDEADEMLSRGFKDQIYDIFQ-------ELPSDVQVVLLSATMPSDVLEVT 218 (397)
T ss_pred --------------------cccceeEEeecchHhhhccchHHHHHHHHH-------HcCcchhheeecccCcHHHHHHH
Confidence 000088999999997764 44444454443 4688999999999999 577788
Q ss_pred HHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhh
Q psy14582 863 TLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMC 942 (1689)
Q Consensus 863 ~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~ 942 (1689)
+-+..+|......-+. ..---+.|.++.+....+ +..+.. +|+ .-.|.+|||+|++.+..+...|...+
T Consensus 219 ~~f~~~pv~i~vkk~~-ltl~gikq~~i~v~k~~k---~~~l~d-l~~------~~~q~~if~nt~r~v~~l~~~L~~~~ 287 (397)
T KOG0327|consen 219 KKFMREPVRILVKKDE-LTLEGIKQFYINVEKEEK---LDTLCD-LYR------RVTQAVIFCNTRRKVDNLTDKLRAHG 287 (397)
T ss_pred HHhccCceEEEecchh-hhhhheeeeeeecccccc---ccHHHH-HHH------hhhcceEEecchhhHHHHHHHHhhCC
Confidence 7777665442222221 222234555665544432 222211 222 34789999999999999998886533
Q ss_pred hhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCC
Q psy14582 943 LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 943 ~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp 1022 (1689)
.. +...|+.|.+.+|..+.+.|+.|..+|||.|+.++||+|+.
T Consensus 288 ~~-------------------------------------~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~ 330 (397)
T KOG0327|consen 288 FT-------------------------------------VSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQ 330 (397)
T ss_pred ce-------------------------------------EEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchh
Confidence 22 33449999999999999999999999999999999999999
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
.+.+| .++++|++ ..+|+||+||+||.| .+|.+
T Consensus 331 ~~slv------------------------inydlP~~---------------------~~~yihR~gr~gr~g--rkg~~ 363 (397)
T KOG0327|consen 331 QVSLV------------------------VNYDLPAR---------------------KENYIHRIGRAGRFG--RKGVA 363 (397)
T ss_pred hccee------------------------eeeccccc---------------------hhhhhhhcccccccC--CCcee
Confidence 99999 46788877 789999999999988 99999
Q ss_pred EEEecCCcHHHHHH
Q psy14582 1103 VLITNHSELQYYLS 1116 (1689)
Q Consensus 1103 iil~~~~~~~~y~~ 1116 (1689)
+-+++..+....++
T Consensus 364 in~v~~~d~~~lk~ 377 (397)
T KOG0327|consen 364 INFVTEEDVRDLKD 377 (397)
T ss_pred eeeehHhhHHHHHh
Confidence 99999877665554
No 67
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.95 E-value=2.3e-26 Score=294.68 Aligned_cols=199 Identities=19% Similarity=0.163 Sum_probs=119.6
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHHHHHHHhhcCCCccEEEecCCCcc-cceE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYKDVATLLRIKPETGLFYFDNSFRP-VALE 886 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~dva~~L~~~~~~~~~~f~~~~Rp-vpL~ 886 (1689)
++++|+||+| +.......++.|+..+.+ .....+.|+++||||++ ...+++..+..++.. +........ ..+.
T Consensus 172 v~~LVLDEAD-Ld~gF~~~l~~Il~~l~r--p~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~--i~V~~~~l~a~ki~ 246 (844)
T TIGR02621 172 DALIVHDEAH-LEPAFQELLKQIMNEQQR--PPDFLPLRVVELTATSRTDGPDRTTLLSAEDYK--HPVLKKRLAAKKIV 246 (844)
T ss_pred ceEEEEehhh-hccccHHHHHHHHHhccc--CcccccceEEEEecCCCccHHHHHHHHccCCce--eecccccccccceE
Confidence 8899999999 332334444444432100 00012368999999998 355666555544321 111111111 1122
Q ss_pred EEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhh
Q psy14582 887 QQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEA 966 (1689)
Q Consensus 887 ~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~ 966 (1689)
+ ++..+...+ +..+...+.. +. ...++++||||+|++.|..+++.|...
T Consensus 247 q-~v~v~~e~K---l~~lv~~L~~-ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~------------------------- 295 (844)
T TIGR02621 247 K-LVPPSDEKF---LSTMVKELNL-LM-KDSGGAILVFCRTVKHVRKVFAKLPKE------------------------- 295 (844)
T ss_pred E-EEecChHHH---HHHHHHHHHH-HH-hhCCCcEEEEECCHHHHHHHHHHHHhc-------------------------
Confidence 2 333332221 1111111111 11 124578999999999999999988652
Q ss_pred hhccchhhhcccCCceeEeccCCCHHHHH-----HHHHHHhc----CC-------eEEEEEcchhccCCCCCCcceeehh
Q psy14582 967 DQVKNGELRDLLPYGFAIHHAGMTRVDRT-----LVEDLFAD----RH-------IQVLVSTATLAWGVNLPAHTVVDRT 1030 (1689)
Q Consensus 967 ~~~~~~~L~~~l~~Gi~~hHagl~~~dR~-----~ve~~F~~----g~-------i~VLVaT~vl~rGIDIp~V~~V~R~ 1030 (1689)
|+...||+|++.+|. .+++.|+. |. .+|||||+++++||||+. ++|
T Consensus 296 --------------g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~V--- 357 (844)
T TIGR02621 296 --------------KFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHL--- 357 (844)
T ss_pred --------------CCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceE---
Confidence 224559999999999 78899987 44 689999999999999986 444
Q ss_pred hHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEE
Q psy14582 1031 LVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLI 1105 (1689)
Q Consensus 1031 ~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil 1105 (1689)
|. | ..+..+|+||+||+||.|....+.++++
T Consensus 358 --------------I~----------------------d--------~aP~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 358 --------------VC----------------------D--------LAPFESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred --------------EE----------------------C--------CCCHHHHHHHhcccCCCCCCCCceEEEE
Confidence 21 1 1246799999999999984333333444
No 68
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.95 E-value=3.3e-26 Score=303.17 Aligned_cols=338 Identities=18% Similarity=0.224 Sum_probs=214.0
Q ss_pred hhccccCCcee-ecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHL-LHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHl-l~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
+++|||||+|. ..+ .+..+. .+.+ +....++.|+|++|||++ .+.++++++..+ ++.... |..|+++
T Consensus 187 ~~~IIIDEAHERsLn-~DfLLg-~Lk~----lL~~rpdlKvILmSATid-~e~fs~~F~~ap---vI~V~G--r~~pVei 254 (1294)
T PRK11131 187 YDTIIIDEAHERSLN-IDFILG-YLKE----LLPRRPDLKVIITSATID-PERFSRHFNNAP---IIEVSG--RTYPVEV 254 (1294)
T ss_pred CcEEEecCccccccc-cchHHH-HHHH----hhhcCCCceEEEeeCCCC-HHHHHHHcCCCC---EEEEcC--ccccceE
Confidence 89999999994 332 222222 1111 112235789999999996 678888876543 333333 4456666
Q ss_pred EEEeechhhH---HHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHH
Q psy14582 888 QYIGVTEKKA---LKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRT 964 (1689)
Q Consensus 888 ~~~~~~~~~~---~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~ 964 (1689)
.|........ ...+..+...+. .+. ....+.+|||++++.++..++..|......
T Consensus 255 ~y~p~~~~~~~~~~d~l~~ll~~V~-~l~-~~~~GdILVFLpg~~EIe~lae~L~~~~~~-------------------- 312 (1294)
T PRK11131 255 RYRPIVEEADDTERDQLQAIFDAVD-ELG-REGPGDILIFMSGEREIRDTADALNKLNLR-------------------- 312 (1294)
T ss_pred EEeecccccchhhHHHHHHHHHHHH-HHh-cCCCCCEEEEcCCHHHHHHHHHHHHhcCCC--------------------
Confidence 6665432111 111222111111 111 234578999999999999999988753211
Q ss_pred hhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEE
Q psy14582 965 EADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVL 1044 (1689)
Q Consensus 965 ~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vL 1044 (1689)
...|..+||+|++.+|..+++. .|..+||||||++++|||||+|++|
T Consensus 313 --------------~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yV----------------- 359 (1294)
T PRK11131 313 --------------HTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYV----------------- 359 (1294)
T ss_pred --------------cceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEE-----------------
Confidence 0124456999999999999886 5889999999999999999999999
Q ss_pred EEcccccccCCCCCceEEEeceeeecCCCCc----ceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhC
Q psy14582 1045 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGR----WVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNH 1120 (1689)
Q Consensus 1045 VaT~TLa~GvNLPa~~VII~gt~~yd~~~~~----~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 1120 (1689)
|-+.. . -...||+..+. ..+.|..+|.||+|||||.+ .|.||.+++..+ |.++...
T Consensus 360 ID~Gl-------~-------k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d---~~~~~~~ 419 (1294)
T PRK11131 360 IDPGT-------A-------RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDD---FLSRPEF 419 (1294)
T ss_pred EECCC-------c-------cccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHH---HHhhhcc
Confidence 43321 0 12567777652 23567899999999999985 899999998643 3333221
Q ss_pred cCC--cccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCChhhhhhhHHHHHHHHHH
Q psy14582 1121 QLP--VESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALH 1198 (1689)
Q Consensus 1121 ~~p--ieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~~lv~~al~~ 1198 (1689)
+.| ..+.|.+. ++ .+. . .|+. ++...+++...-.+.|..|+..
T Consensus 420 ~~PEIlR~~L~~v---------iL-----------~lk------~-------lgl~--di~~F~fldpP~~~~i~~al~~ 464 (1294)
T PRK11131 420 TDPEILRTNLASV---------IL-----------QMT------A-------LGLG--DIAAFPFVEAPDKRNIQDGVRL 464 (1294)
T ss_pred cCCccccCCHHHH---------HH-----------HHH------H-------cCCC--CcceeeCCCCCCHHHHHHHHHH
Confidence 222 12222211 11 000 0 0111 1111233444445779999999
Q ss_pred HHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCChHHHH
Q psy14582 1199 LERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKL 1270 (1689)
Q Consensus 1199 L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~~E~~ 1270 (1689)
|...|+|..+..++...+|++|+.+|.++++|...+++.......|. .+++.|.|.-+ ..++..|..++.
T Consensus 465 L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~-~evl~IaA~Ls-v~dpf~~p~~~~ 534 (1294)
T PRK11131 465 LEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCV-REVMIITSALS-IQDPRERPMDKQ 534 (1294)
T ss_pred HHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCH-HHHHHHHHHHc-CCCcccCCchhH
Confidence 99999998654334568999999999999999999999988776664 45666655433 235555555544
No 69
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.95 E-value=2e-25 Score=285.55 Aligned_cols=218 Identities=17% Similarity=0.176 Sum_probs=136.8
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCC-CHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLP-NYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~-n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
++++|+||+|..... +..+..++.+. .....|+++||||++ +.+.+.+|++.. . .+.... ....|+++
T Consensus 292 v~~VVIDEaHEr~~~-~DllL~llk~~------~~~~rq~ILmSATl~~dv~~l~~~~~~p-~--~I~I~g-rt~~pV~~ 360 (675)
T PHA02653 292 YGTVIIDEVHEHDQI-GDIIIAVARKH------IDKIRSLFLMTATLEDDRDRIKEFFPNP-A--FVHIPG-GTLFPISE 360 (675)
T ss_pred CCEEEccccccCccc-hhHHHHHHHHh------hhhcCEEEEEccCCcHhHHHHHHHhcCC-c--EEEeCC-CcCCCeEE
Confidence 889999999987543 33333332221 112248999999998 567788877632 1 233222 12357777
Q ss_pred EEEeechh--hHHHHHHHhhHHHHHHHHHH--hCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHH
Q psy14582 888 QYIGVTEK--KALKRFQVMNDIVYEKVMEH--AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLR 963 (1689)
Q Consensus 888 ~~~~~~~~--~~~~~~~~m~~~~~~~i~~~--~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~ 963 (1689)
.+...... ........-...+...+... ..++++||||+++.++..+++.|.....
T Consensus 361 ~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~-------------------- 420 (675)
T PHA02653 361 VYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP-------------------- 420 (675)
T ss_pred EEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC--------------------
Confidence 76543211 00000000001112222222 1346899999999999999998875310
Q ss_pred HhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHH-hcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccce
Q psy14582 964 TEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLF-ADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQ 1042 (1689)
Q Consensus 964 ~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F-~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~ 1042 (1689)
...+...||+|++. ..+++.| ++|+.+|||||++++||||||+|++|
T Consensus 421 ---------------~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~V--------------- 468 (675)
T PHA02653 421 ---------------IYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHV--------------- 468 (675)
T ss_pred ---------------CceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEE---------------
Confidence 11244569999975 3455555 79999999999999999999999999
Q ss_pred EEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1043 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1043 vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
|-+.- +-.|.. ..+....+|..+|.||+|||||.+ .|.|+.+.+..+
T Consensus 469 --ID~G~----~k~p~~------------~~g~~~~iSkasa~QRaGRAGR~~---~G~c~rLyt~~~ 515 (675)
T PHA02653 469 --YDTGR----VYVPEP------------FGGKEMFISKSMRTQRKGRVGRVS---PGTYVYFYDLDL 515 (675)
T ss_pred --EECCC----ccCCCc------------ccCcccccCHHHHHHhccCcCCCC---CCeEEEEECHHH
Confidence 54321 112210 111223468999999999999984 899999988754
No 70
>KOG0337|consensus
Probab=99.95 E-value=4.6e-27 Score=268.59 Aligned_cols=343 Identities=21% Similarity=0.270 Sum_probs=233.7
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+|......++. ||+.|||||++.+|.+| .++++...|-||||||.||++||+..+..+. ..+.|+++++|
T Consensus 27 gL~~~v~raI~kkg~~~ptpiqRKTipliL-e~~dvv~martgsgktaaf~ipm~e~Lk~~s-------~~g~Ralilsp 98 (529)
T KOG0337|consen 27 GLDYKVLRAIHKKGFNTPTPIQRKTIPLIL-EGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLRALILSP 98 (529)
T ss_pred CCCHHHHHHHHHhhcCCCCchhccccccee-eccccceeeecCCcchhhHHHHHHHHHhhcc-------ccccceeeccC
Confidence 67766666664 99999999999999999 7999999999999999999999999998763 25689999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
||+||.|....+.. + +.+ ++
T Consensus 99 treLa~qtlkvvkd-l---------------------------------------------grg------t~-------- 118 (529)
T KOG0337|consen 99 TRELALQTLKVVKD-L---------------------------------------------GRG------TK-------- 118 (529)
T ss_pred cHHHHHHHHHHHHH-h---------------------------------------------ccc------cc--------
Confidence 99999998744322 1 000 00
Q ss_pred ccccceeE-EEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCC
Q psy14582 625 RPVALEQQ-YIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSE 703 (1689)
Q Consensus 625 r~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~ 703 (1689)
+++. .++. +.--.+...+ -.+++||++| |+. .+|
T Consensus 119 ----lr~s~~~gg--D~~eeqf~~l-----------~~npDii~AT--------pgr----~~h---------------- 153 (529)
T KOG0337|consen 119 ----LRQSLLVGG--DSIEEQFILL-----------NENPDIIIAT--------PGR----LLH---------------- 153 (529)
T ss_pred ----hhhhhhccc--chHHHHHHHh-----------ccCCCEEEec--------Cce----eee----------------
Confidence 0000 0010 1111111111 1268899999 982 222
Q ss_pred cccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccc
Q psy14582 704 VVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHIN 783 (1689)
Q Consensus 704 ~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~ 783 (1689)
-+..-++
T Consensus 154 ----------------------------------------------------------~~vem~l--------------- 160 (529)
T KOG0337|consen 154 ----------------------------------------------------------LGVEMTL--------------- 160 (529)
T ss_pred ----------------------------------------------------------eehheec---------------
Confidence 0000000
Q ss_pred cCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHH
Q psy14582 784 ADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVA 862 (1689)
Q Consensus 784 ~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva 862 (1689)
-.+.|.++|+||++.|.. .....+..+++| .+...|.+.||||+| .++.
T Consensus 161 ---------------------~l~sveyVVfdEadrlfemgfqeql~e~l~r-------l~~~~QTllfSatlp--~~lv 210 (529)
T KOG0337|consen 161 ---------------------TLSSVEYVVFDEADRLFEMGFQEQLHEILSR-------LPESRQTLLFSATLP--RDLV 210 (529)
T ss_pred ---------------------cccceeeeeehhhhHHHhhhhHHHHHHHHHh-------CCCcceEEEEeccCc--hhhH
Confidence 000188999999998765 355555556555 466779999999999 5555
Q ss_pred HHhhcCCCccEEE-ecCCCcc-cceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHH
Q psy14582 863 TLLRIKPETGLFY-FDNSFRP-VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRD 940 (1689)
Q Consensus 863 ~~L~~~~~~~~~~-f~~~~Rp-vpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~ 940 (1689)
.|-.+-....+.. .+-.-+- -.++..+..+....+...+ ...+......++++|||.|+..++.+...|..
T Consensus 211 ~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaL-------l~il~~~~~~~~t~vf~~tk~hve~~~~ll~~ 283 (529)
T KOG0337|consen 211 DFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAAL-------LSILGGRIKDKQTIVFVATKHHVEYVRGLLRD 283 (529)
T ss_pred HHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHH-------HHHHhccccccceeEEecccchHHHHHHHHHh
Confidence 6555432221211 1111111 1233334444433322211 11222333457999999999999988887776
Q ss_pred hhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCC
Q psy14582 941 MCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVN 1020 (1689)
Q Consensus 941 ~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGID 1020 (1689)
.+.. +...++.|.+..|..-...|+.++..+||.|++++||+|
T Consensus 284 ~g~~-------------------------------------~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~d 326 (529)
T KOG0337|consen 284 FGGE-------------------------------------GSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLD 326 (529)
T ss_pred cCCC-------------------------------------ccccccccChHhhhhccccccCCccceEEEehhhhccCC
Confidence 4433 334489999999999999999999999999999999999
Q ss_pred CCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1021 LPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1021 Ip~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
||..+.| .++++|+. ..-|+||+||+.|+| ..|
T Consensus 327 iplldnv------------------------inyd~p~~---------------------~klFvhRVgr~arag--rtg 359 (529)
T KOG0337|consen 327 IPLLDNV------------------------INYDFPPD---------------------DKLFVHRVGRVARAG--RTG 359 (529)
T ss_pred Ccccccc------------------------ccccCCCC---------------------CceEEEEecchhhcc--ccc
Confidence 9999998 67888766 334779999999998 899
Q ss_pred EEEEEecCCcHHHHHH
Q psy14582 1101 EGVLITNHSELQYYLS 1116 (1689)
Q Consensus 1101 ~~iil~~~~~~~~y~~ 1116 (1689)
.+|-++...+..|...
T Consensus 360 ~aYs~V~~~~~~yl~D 375 (529)
T KOG0337|consen 360 RAYSLVASTDDPYLLD 375 (529)
T ss_pred eEEEEEecccchhhhh
Confidence 9999998887766654
No 71
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=6.9e-26 Score=279.65 Aligned_cols=212 Identities=20% Similarity=0.286 Sum_probs=156.3
Q ss_pred hhccccCCceeecC----CchhHHHHHHHHHHHHHHhccccceEEEEecCCCC--HHHHHHHhhcCCCccEEEecCCCcc
Q psy14582 809 VGNFGKDEIHLLHD----ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN--YKDVATLLRIKPETGLFYFDNSFRP 882 (1689)
Q Consensus 809 v~liIiDEiHll~d----~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dva~~L~~~~~~~~~~f~~~~Rp 882 (1689)
+.+++|||+|++.. .|..+..... +....+++.+++||||-+. ..|+.+-|+..... .+..+-.||
T Consensus 132 i~l~vIDEAHCiSqWGhdFRP~Y~~lg~------l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~--~~~~sfdRp 203 (590)
T COG0514 132 ISLVAIDEAHCISQWGHDFRPDYRRLGR------LRAGLPNPPVLALTATATPRVRDDIREQLGLQDAN--IFRGSFDRP 203 (590)
T ss_pred CceEEechHHHHhhcCCccCHhHHHHHH------HHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcc--eEEecCCCc
Confidence 89999999999953 4544433221 1223458999999999874 68888888876432 233344455
Q ss_pred cceEEEEEeechhhHHHHHHHhhHHHHHHHHH--HhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHH
Q psy14582 883 VALEQQYIGVTEKKALKRFQVMNDIVYEKVME--HAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASME 960 (1689)
Q Consensus 883 vpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~--~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e 960 (1689)
++...+.... +... +.. .+.. ....++.||||.||+.++.+|.+|...+
T Consensus 204 -Ni~~~v~~~~--~~~~------q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g------------------ 254 (590)
T COG0514 204 -NLALKVVEKG--EPSD------QLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNG------------------ 254 (590)
T ss_pred -hhhhhhhhcc--cHHH------HHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCC------------------
Confidence 2221111111 1111 111 2222 3345679999999999999999998732
Q ss_pred HHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhccc
Q psy14582 961 VLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRH 1040 (1689)
Q Consensus 961 ~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~ 1040 (1689)
...++|||||+..+|..+++.|..+.++|+|||.++++|||.|+|++|
T Consensus 255 -------------------~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfV------------- 302 (590)
T COG0514 255 -------------------ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFV------------- 302 (590)
T ss_pred -------------------CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEE-------------
Confidence 235678999999999999999999999999999999999999999999
Q ss_pred ceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhC
Q psy14582 1041 IQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNH 1120 (1689)
Q Consensus 1041 i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 1120 (1689)
..+++|.. +.+|.|-+|||||.| ....|+++.+..+......++..
T Consensus 303 -----------iH~~lP~s---------------------~EsYyQE~GRAGRDG--~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 303 -----------IHYDLPGS---------------------IESYYQETGRAGRDG--LPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred -----------EEecCCCC---------------------HHHHHHHHhhccCCC--CcceEEEeeccccHHHHHHHHHh
Confidence 45555544 999999999999999 88999999999888777777776
Q ss_pred cCC
Q psy14582 1121 QLP 1123 (1689)
Q Consensus 1121 ~~p 1123 (1689)
..|
T Consensus 349 ~~~ 351 (590)
T COG0514 349 SKP 351 (590)
T ss_pred hcc
Confidence 665
No 72
>KOG0949|consensus
Probab=99.94 E-value=3.8e-26 Score=280.79 Aligned_cols=106 Identities=43% Similarity=0.650 Sum_probs=90.7
Q ss_pred hhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEccccc
Q psy14582 972 GELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLA 1051 (1689)
Q Consensus 972 ~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa 1051 (1689)
..+.+++-+|||+|||||.+..|.+||-+|+.|+++|| +||.||+
T Consensus 955 ~~~id~lyRGiG~HHaglNr~yR~~VEvLFR~g~L~Vl-----------------------------------faT~TLs 999 (1330)
T KOG0949|consen 955 FEFIDMLYRGIGVHHAGLNRKYRSLVEVLFRQGHLQVL-----------------------------------FATETLS 999 (1330)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhcCceEEE-----------------------------------EEeeehh
Confidence 45667888999999999999999999999999999999 9999999
Q ss_pred ccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCcCC
Q psy14582 1052 WGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLP 1123 (1689)
Q Consensus 1052 ~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 1123 (1689)
.|||+|+++|++.|.. ..+++..|.||+|||||.|||..|.++.+--+ .+...++|+..+|
T Consensus 1000 LGiNMPCrTVvF~gDs---------LQL~plny~QmaGRAGRRGFD~lGnV~FmgiP--~~kv~rLlts~L~ 1060 (1330)
T KOG0949|consen 1000 LGINMPCRTVVFAGDS---------LQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIP--RQKVQRLLTSLLP 1060 (1330)
T ss_pred cccCCCceeEEEeccc---------cccCchhHHhhhccccccccccccceEEEeCc--HHHHHHHHHHhhh
Confidence 9999999999998753 34789999999999999999999999887655 2345555554433
No 73
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.94 E-value=2e-25 Score=272.92 Aligned_cols=201 Identities=17% Similarity=0.225 Sum_probs=125.2
Q ss_pred hhccccCCceeecCC-chhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccc---
Q psy14582 809 VGNFGKDEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVA--- 884 (1689)
Q Consensus 809 v~liIiDEiHll~d~-rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~Rpvp--- 884 (1689)
.+++|+||+|.+.+. .+. +..++.. +. ..+.|++++|||+| +.+.+|+...... .........+
T Consensus 125 ~~~iViDE~h~~~~~~~~~-l~~~l~~----l~--~~~~~~i~~SATlp--~~l~~~~~~~~~~---~~~~~~~~~~~~~ 192 (358)
T TIGR01587 125 NSLLIFDEVHFYDEYTLAL-ILAVLEV----LK--DNDVPILLMSATLP--KFLKEYAEKIGYV---EFNEPLDLKEERR 192 (358)
T ss_pred CCEEEEeCCCCCCHHHHHH-HHHHHHH----HH--HcCCCEEEEecCch--HHHHHHHhcCCCc---ccccCCCCccccc
Confidence 478999999999864 333 3333322 21 34689999999999 4556665432111 0000000000
Q ss_pred e-EEEEEeechhhHHHHHHHhhHHHHHHHHH-HhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHH
Q psy14582 885 L-EQQYIGVTEKKALKRFQVMNDIVYEKVME-HAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVL 962 (1689)
Q Consensus 885 L-~~~~~~~~~~~~~~~~~~m~~~~~~~i~~-~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l 962 (1689)
. .+.+....... ......+ ..+.+ ...++++||||+|++.|..++..|.+.+.
T Consensus 193 ~~~~~~~~~~~~~-~~~~~~l-----~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~------------------- 247 (358)
T TIGR01587 193 FERHRFIKIESDK-VGEISSL-----ERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAP------------------- 247 (358)
T ss_pred cccccceeecccc-ccCHHHH-----HHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcC-------------------
Confidence 1 11121111110 0011111 11222 23468999999999999999998876321
Q ss_pred HHhhhhccchhhhcccCCceeEeccCCCHHHHHHH----HHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhc
Q psy14582 963 RTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLV----EDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFAD 1038 (1689)
Q Consensus 963 ~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~v----e~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~ 1038 (1689)
...+..+||+|++.+|..+ .+.|++|..+|||||+++++|+||+ +++|
T Consensus 248 ----------------~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v----------- 299 (358)
T TIGR01587 248 ----------------EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM----------- 299 (358)
T ss_pred ----------------CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE-----------
Confidence 1246778999999999764 7889999999999999999999986 4444
Q ss_pred ccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCC--CccEEEEEecCCc
Q psy14582 1039 RHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYD--TKGEGVLITNHSE 1110 (1689)
Q Consensus 1039 g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d--~~G~~iil~~~~~ 1110 (1689)
|. | +.++.+|+||+||+||.|.. ..|.++++....+
T Consensus 300 ------i~----------------------~--------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 300 ------IT----------------------E--------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred ------EE----------------------c--------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 21 1 13477999999999998843 2358888876543
No 74
>KOG0354|consensus
Probab=99.93 E-value=1.4e-24 Score=270.24 Aligned_cols=120 Identities=24% Similarity=0.362 Sum_probs=92.3
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
+..++||||.+|..|..+-++|.......-.... +...|-+-...||++.++..
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~--------------------------fiGq~~s~~~~gmtqk~Q~e 465 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQLHELGIKAEI--------------------------FIGQGKSTQSTGMTQKEQKE 465 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHhhhhcccccce--------------------------eeeccccccccccCHHHHHH
Confidence 3568999999999999999988751111001111 12222233347999999999
Q ss_pred HHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcc
Q psy14582 997 VEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRW 1076 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~ 1076 (1689)
+++.|++|.++|||||+++++|+||+.|++| || ||...
T Consensus 466 vl~~Fr~G~~NvLVATSV~EEGLDI~ec~lV-----------------Ic----------------------Yd~~s--- 503 (746)
T KOG0354|consen 466 VLDKFRDGEINVLVATSVAEEGLDIGECNLV-----------------IC----------------------YDYSS--- 503 (746)
T ss_pred HHHHHhCCCccEEEEecchhccCCcccccEE-----------------EE----------------------ecCCc---
Confidence 9999999999999999999999999999999 65 55432
Q ss_pred eecCHHHHHHHhcccCCCCCCCccEEEEEecCCcH
Q psy14582 1077 VELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL 1111 (1689)
Q Consensus 1077 ~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~ 1111 (1689)
++...+||.|| ||+ +.|+++++++..+.
T Consensus 504 ---npIrmIQrrGR-gRa---~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 504 ---NPIRMVQRRGR-GRA---RNSKCVLLTTGSEV 531 (746)
T ss_pred ---cHHHHHHHhcc-ccc---cCCeEEEEEcchhH
Confidence 48899999999 998 58999999985443
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.93 E-value=1.2e-24 Score=264.50 Aligned_cols=170 Identities=19% Similarity=0.191 Sum_probs=101.0
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcC--CCccEE-------Eec--
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIK--PETGLF-------YFD-- 877 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~--~~~~~~-------~f~-- 877 (1689)
++++|+||+|.+....+..+...+..+ ..+.......|++++|||++. .+..++... ....+. .|.
T Consensus 146 ~~~iV~DE~H~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~i~lSAT~~~--~~~~~l~~~~~~~~~~~~v~g~~~~~~~~ 222 (357)
T TIGR03158 146 FSTVIFDEFHLYDAKQLVGMLFLLAYM-QLIRFFECRRKFVFLSATPDP--ALILRLQNAKQAGVKIAPIDGEKYQFPDN 222 (357)
T ss_pred CCEEEEecccccCcccchhhhhhhHHH-HHHHhhhcCCcEEEEecCCCH--HHHHHHHhccccCceeeeecCcccccCCC
Confidence 899999999998764443333222222 222223335799999999983 444444321 000011 110
Q ss_pred ---------CCCccc--ceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhcc
Q psy14582 878 ---------NSFRPV--ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKD 946 (1689)
Q Consensus 878 ---------~~~Rpv--pL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~ 946 (1689)
..+||+ ++++.+.. ........+..+.+.+.+.+ +...++++||||+|++.+..++..|.+.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~-~~~~~~k~LIf~nt~~~~~~l~~~L~~~~---- 296 (357)
T TIGR03158 223 PELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERF-RQLPGERGAIILDSLDEVNRLSDLLQQQG---- 296 (357)
T ss_pred hhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHH-hccCCCeEEEEECCHHHHHHHHHHHhhhC----
Confidence 134543 45555543 22222222222222222211 12346799999999999999999987521
Q ss_pred ccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCc
Q psy14582 947 TLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAH 1024 (1689)
Q Consensus 947 ~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V 1024 (1689)
....+..+||.+++.+|..+ +...|||||++++||||++.+
T Consensus 297 -------------------------------~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~ 337 (357)
T TIGR03158 297 -------------------------------LGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD 337 (357)
T ss_pred -------------------------------CCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc
Confidence 11235567999999998643 478999999999999999876
No 76
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.93 E-value=7.7e-24 Score=282.02 Aligned_cols=336 Identities=17% Similarity=0.217 Sum_probs=212.6
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQ 888 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~ 888 (1689)
+++|||||+|. |.-..+.++..++..+ ...++.|+|+||||++ .+.++++++..+ ++.... |..|++..
T Consensus 180 ~~~IIIDEaHE----RsL~~D~LL~lLk~il-~~rpdLKlIlmSATld-~~~fa~~F~~ap---vI~V~G--r~~PVev~ 248 (1283)
T TIGR01967 180 YDTIIIDEAHE----RSLNIDFLLGYLKQLL-PRRPDLKIIITSATID-PERFSRHFNNAP---IIEVSG--RTYPVEVR 248 (1283)
T ss_pred CcEEEEcCcch----hhccchhHHHHHHHHH-hhCCCCeEEEEeCCcC-HHHHHHHhcCCC---EEEECC--CcccceeE
Confidence 89999999993 2222233332222222 2346789999999996 678999887543 333333 44566666
Q ss_pred EEeechhh---HHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHh
Q psy14582 889 YIGVTEKK---ALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTE 965 (1689)
Q Consensus 889 ~~~~~~~~---~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~ 965 (1689)
|....... .......+...+. .+.. ...+.+|||++++++++.++..|......
T Consensus 249 Y~~~~~~~~~~~~~~~~~i~~~I~-~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~~~--------------------- 305 (1283)
T TIGR01967 249 YRPLVEEQEDDDLDQLEAILDAVD-ELFA-EGPGDILIFLPGEREIRDAAEILRKRNLR--------------------- 305 (1283)
T ss_pred EecccccccchhhhHHHHHHHHHH-HHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcCCC---------------------
Confidence 65432211 1111222222221 1222 13578999999999999999988753210
Q ss_pred hhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEE
Q psy14582 966 ADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLV 1045 (1689)
Q Consensus 966 ~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLV 1045 (1689)
...|..+||+|+..+|..+++.+ +..+||||||++++|||||+|++| |
T Consensus 306 -------------~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yV-----------------I 353 (1283)
T TIGR01967 306 -------------HTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYV-----------------I 353 (1283)
T ss_pred -------------CcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEE-----------------E
Confidence 11245669999999999986553 347999999999999999999999 5
Q ss_pred EcccccccCCCCCceEEEeceeeecCCCCcc----eecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCc
Q psy14582 1046 STATLAWGVNLPAHTVIIKGTQIYNPEKGRW----VELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQ 1121 (1689)
Q Consensus 1046 aT~TLa~GvNLPa~~VII~gt~~yd~~~~~~----~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~ 1121 (1689)
-+. ++- ...||+..|.. ..+|..+|.||.|||||.| .|.||-+.+..+ |..+...+
T Consensus 354 DsG-------l~r-------~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~---~~~~~~~~ 413 (1283)
T TIGR01967 354 DTG-------TAR-------ISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEED---FNSRPEFT 413 (1283)
T ss_pred eCC-------Ccc-------ccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHH---HHhhhhcc
Confidence 332 221 15688776632 3578899999999999997 899999988543 33332222
Q ss_pred CC--cccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCChhhhhhhHHHHHHHHHHH
Q psy14582 1122 LP--VESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHL 1199 (1689)
Q Consensus 1122 ~p--ieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~~lv~~al~~L 1199 (1689)
.| ..+.|. .+++ .... .|+. ++...+++...-.+.|..|+..|
T Consensus 414 ~PEIlR~~L~---------~viL----------~l~~--------------lg~~--di~~f~fldpP~~~~i~~A~~~L 458 (1283)
T TIGR01967 414 DPEILRTNLA---------SVIL----------QMLA--------------LRLG--DIAAFPFIEAPDPRAIRDGFRLL 458 (1283)
T ss_pred CcccccccHH---------HHHH----------HHHh--------------cCCC--CcccccCCCCCCHHHHHHHHHHH
Confidence 22 122221 1111 0000 0111 11122334444457799999999
Q ss_pred HHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCChHHH
Q psy14582 1200 ERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEK 1269 (1689)
Q Consensus 1200 ~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~~E~ 1269 (1689)
...|+|+.+. +...+|++|+.+|.++++|...+++.......|. .+++.|.|.-++ .++..|..++
T Consensus 459 ~~LGAld~~~--~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl-~e~l~IaA~Ls~-~dp~~~p~~~ 524 (1283)
T TIGR01967 459 EELGALDDDE--AEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCL-QEVLIIASALSI-QDPRERPMEK 524 (1283)
T ss_pred HHCCCCCCCC--CCccccHHHHHHhhcCCChHHHHHHHHhhhcCCH-HHHHHHHHHHcC-CCcCCCcchh
Confidence 9999997442 2367999999999999999999999988766654 456666665443 4455454443
No 77
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=5.7e-23 Score=258.83 Aligned_cols=166 Identities=19% Similarity=0.180 Sum_probs=112.2
Q ss_pred eEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccc--eEEEEEeechhhHHHHHHHhhHHHHHHHHH-HhCCCeEE
Q psy14582 847 RLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVA--LEQQYIGVTEKKALKRFQVMNDIVYEKVME-HAGRNQLL 922 (1689)
Q Consensus 847 riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~Rpvp--L~~~~~~~~~~~~~~~~~~m~~~~~~~i~~-~~~~~~vL 922 (1689)
++.|||||.+. .+++.++++.+. ..-+..+|.. ..+.++..+...+ +..+.+ .+.+ +..+.|+|
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~v-----v~IPt~kp~~r~~~~~~v~~t~~~K---~~aL~~----~i~~~~~~~~pvL 477 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPV-----VRIPTNRPSQRRHLPDEVFLTAAAK---WAAVAA----RVRELHAQGRPVL 477 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCe-----EEeCCCCCccceecCCEEEeCHHHH---HHHHHH----HHHHHHhcCCCEE
Confidence 67899999985 457777777652 2234445542 1122333333222 222222 2222 22357899
Q ss_pred EEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHh
Q psy14582 923 VFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFA 1002 (1689)
Q Consensus 923 VFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~ 1002 (1689)
|||+|++.++.++..|...+.. +...||.+...++..+. |+
T Consensus 478 Ift~t~~~se~L~~~L~~~gi~-------------------------------------~~~Lhg~~~~rE~~ii~--~a 518 (656)
T PRK12898 478 VGTRSVAASERLSALLREAGLP-------------------------------------HQVLNAKQDAEEAAIVA--RA 518 (656)
T ss_pred EEeCcHHHHHHHHHHHHHCCCC-------------------------------------EEEeeCCcHHHHHHHHH--Hc
Confidence 9999999999999999874433 23448987666555554 55
Q ss_pred cCCeEEEEEcchhccCCCCC---Ccc-----eeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCC
Q psy14582 1003 DRHIQVLVSTATLAWGVNLP---AHT-----VVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 1074 (1689)
Q Consensus 1003 ~g~i~VLVaT~vl~rGIDIp---~V~-----~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~ 1074 (1689)
.+...|+||||+++||+||+ +|. +| +|+++|.+
T Consensus 519 g~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhV------------------------I~~d~P~s--------------- 559 (656)
T PRK12898 519 GQRGRITVATNMAGRGTDIKLEPGVAARGGLHV------------------------ILTERHDS--------------- 559 (656)
T ss_pred CCCCcEEEEccchhcccCcCCccchhhcCCCEE------------------------EEcCCCCC---------------
Confidence 55557999999999999999 665 66 34555544
Q ss_pred cceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1075 RWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1075 ~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
...|.||+|||||.| ..|.++.+.+..+
T Consensus 560 ------~r~y~hr~GRTGRqG--~~G~s~~~is~eD 587 (656)
T PRK12898 560 ------ARIDRQLAGRCGRQG--DPGSYEAILSLED 587 (656)
T ss_pred ------HHHHHHhcccccCCC--CCeEEEEEechhH
Confidence 778999999999999 7899999988644
No 78
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.91 E-value=1.3e-23 Score=273.44 Aligned_cols=265 Identities=21% Similarity=0.183 Sum_probs=142.9
Q ss_pred hhccccCCceeecC--CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCC--cccc
Q psy14582 809 VGNFGKDEIHLLHD--ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF--RPVA 884 (1689)
Q Consensus 809 v~liIiDEiHll~d--~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~--Rpvp 884 (1689)
++++|+||+|.... ..++.+.. |.+........+.++|++|||++ .+......... .........+ ++.|
T Consensus 259 l~liVvDEeh~~s~~~~~~p~y~~---r~va~~ra~~~~~~~il~SATps-~~s~~~~~~g~--~~~~~l~~r~~~~~~p 332 (679)
T PRK05580 259 LGLIIVDEEHDSSYKQQEGPRYHA---RDLAVVRAKLENIPVVLGSATPS-LESLANAQQGR--YRLLRLTKRAGGARLP 332 (679)
T ss_pred CCEEEEECCCccccccCcCCCCcH---HHHHHHHhhccCCCEEEEcCCCC-HHHHHHHhccc--eeEEEeccccccCCCC
Confidence 88999999997653 23433211 11111123356889999999965 33333222111 1122222222 1112
Q ss_pred eEEEEEeechhhHHHHHHHhhHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCc-------
Q psy14582 885 LEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAG-RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGS------- 956 (1689)
Q Consensus 885 L~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~-~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~------- 956 (1689)
...++.............+...+++.+.+... ++|+|||+|.|..+..+...-+.....+...+..+....
T Consensus 333 -~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~C 411 (679)
T PRK05580 333 -EVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRC 411 (679)
T ss_pred -eEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEEC
Confidence 23333332210000001234455666655544 569999999987665444443332222111111110000
Q ss_pred --h----hHHHHHHhhhhc-----------cchhhhcccC-CceeEeccCCC--HHHHHHHHHHHhcCCeEEEEEcchhc
Q psy14582 957 --A----SMEVLRTEADQV-----------KNGELRDLLP-YGFAIHHAGMT--RVDRTLVEDLFADRHIQVLVSTATLA 1016 (1689)
Q Consensus 957 --~----~~e~l~~~~~~~-----------~~~~L~~~l~-~Gi~~hHagl~--~~dR~~ve~~F~~g~i~VLVaT~vl~ 1016 (1689)
. .....+..+... -.+.|+..++ ..+...|++++ ..+++.+++.|++|+++|||+|++++
T Consensus 412 h~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~ia 491 (679)
T PRK05580 412 HHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLA 491 (679)
T ss_pred CCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhc
Confidence 0 000001111000 0123444444 46778899986 46789999999999999999999999
Q ss_pred cCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCC
Q psy14582 1017 WGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQY 1096 (1689)
Q Consensus 1017 rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~ 1096 (1689)
+|+|+|+|++| +--. .....++|.. .+ .+.....|+|++|||||.+
T Consensus 492 kG~d~p~v~lV-----------------~il~-aD~~l~~pdf----------ra-----~Er~~~~l~q~~GRagR~~- 537 (679)
T PRK05580 492 KGHDFPNVTLV-----------------GVLD-ADLGLFSPDF----------RA-----SERTFQLLTQVAGRAGRAE- 537 (679)
T ss_pred cCCCCCCcCEE-----------------EEEc-CchhccCCcc----------ch-----HHHHHHHHHHHHhhccCCC-
Confidence 99999999998 2110 0011222211 11 1223678999999999976
Q ss_pred CCccEEEEEecCCcHHHHH
Q psy14582 1097 DTKGEGVLITNHSELQYYL 1115 (1689)
Q Consensus 1097 d~~G~~iil~~~~~~~~y~ 1115 (1689)
..|.+++.|...+...+.
T Consensus 538 -~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 538 -KPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred -CCCEEEEEeCCCCCHHHH
Confidence 889999999876544433
No 79
>PRK09401 reverse gyrase; Reviewed
Probab=99.91 E-value=5.2e-23 Score=277.80 Aligned_cols=67 Identities=30% Similarity=0.322 Sum_probs=56.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
|+ +|+++|..++|.++ .|+|++++||||||||. |++|++..+.. .+.+++||+|||+||.|++..+.
T Consensus 78 G~-~pt~iQ~~~i~~il-~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----------~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLL-LGESFAIIAPTGVGKTT-FGLVMSLYLAK----------KGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred CC-CCcHHHHHHHHHHH-CCCcEEEEcCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeccHHHHHHHHHHHH
Confidence 66 79999999999998 89999999999999995 66666555432 34689999999999999996663
No 80
>PRK14701 reverse gyrase; Provisional
Probab=99.91 E-value=3.5e-23 Score=284.29 Aligned_cols=190 Identities=20% Similarity=0.243 Sum_probs=117.3
Q ss_pred ccce-EEEEecCCCCHHHHHHHhhcCCCccEEEecCCC-ccc--ceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCC
Q psy14582 844 EDVR-LVGLSATLPNYKDVATLLRIKPETGLFYFDNSF-RPV--ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRN 919 (1689)
Q Consensus 844 ~~~r-iV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~-Rpv--pL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~ 919 (1689)
...+ ++.+|||++.-.++..++... ..|.... ++. .+.+.++....... . . +.. +++.. +.
T Consensus 267 ~~~~~ll~~SAT~~~r~~~~~l~~~~-----l~f~v~~~~~~lr~i~~~yi~~~~~~k-~---~----L~~-ll~~~-g~ 331 (1638)
T PRK14701 267 NKIGCLIVASATGKAKGDRVKLYREL-----LGFEVGSGRSALRNIVDVYLNPEKIIK-E---H----VRE-LLKKL-GK 331 (1638)
T ss_pred CCccEEEEEecCCCchhHHHHHhhcC-----eEEEecCCCCCCCCcEEEEEECCHHHH-H---H----HHH-HHHhC-CC
Confidence 3444 677999999655666666321 2232222 221 34555554432221 1 1 111 22222 46
Q ss_pred eEEEEeCChHHH---HHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 920 QLLVFVHSRKET---GKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 920 ~vLVFv~srk~~---~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
++||||+|++.+ +.++..|...+. .++.+||+ |..
T Consensus 332 ~gIVF~~t~~~~e~ae~la~~L~~~Gi-------------------------------------~a~~~h~~-----R~~ 369 (1638)
T PRK14701 332 GGLIFVPIDEGAEKAEEIEKYLLEDGF-------------------------------------KIELVSAK-----NKK 369 (1638)
T ss_pred CeEEEEeccccchHHHHHHHHHHHCCC-------------------------------------eEEEecch-----HHH
Confidence 899999999864 788888876432 23445875 889
Q ss_pred HHHHHhcCCeEEEEEc----chhccCCCCCC-cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecC
Q psy14582 997 VEDLFADRHIQVLVST----ATLAWGVNLPA-HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 1071 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT----~vl~rGIDIp~-V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~ 1071 (1689)
+++.|++|+++||||| ++++||||+|+ |++| ..+++|.+..=+ ..|..
T Consensus 370 ~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryv------------------------i~~~~Pk~~~~~---e~~~~ 422 (1638)
T PRK14701 370 GFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFA------------------------VFYGVPKFRFRV---DLEDP 422 (1638)
T ss_pred HHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEE------------------------EEeCCCCCCcch---hhccc
Confidence 9999999999999999 59999999999 9999 678888754222 22222
Q ss_pred CCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCc
Q psy14582 1072 EKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQ 1121 (1689)
Q Consensus 1072 ~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~ 1121 (1689)
..+.. +...-.+++.|||||.| ..+.++............+++...
T Consensus 423 ~~~~~--~~~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l~~~ 468 (1638)
T PRK14701 423 TIYRI--LGLLSEILKIEEELKEG--IPIEGVLDVFPEDVEFLRSILKDE 468 (1638)
T ss_pred chhhh--hcchHHHHHhhhhcccC--CcchhHHHhHHHHHHHHHHHhccH
Confidence 22111 11345678899999998 566665444444455555555543
No 81
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.90 E-value=4.1e-22 Score=252.87 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=83.3
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.+.+++|||.+.+.++.++..|...+. .+.+.||+|+..+|..
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g~-------------------------------------~v~~i~G~~~~~eR~~ 385 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVYD-------------------------------------KVYYVSGEVDTEDRNE 385 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcCC-------------------------------------CEEEEeCCCCHHHHHH
Confidence 356788988888899888888876322 3456699999999999
Q ss_pred HHHHHhcCCeEEEEEc-chhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCc
Q psy14582 997 VEDLFADRHIQVLVST-ATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGR 1075 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT-~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~ 1075 (1689)
+++.|++|...||||| +++++|+|+|++++| | .++|.
T Consensus 386 i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~v-----------------I----------------------l~~p~--- 423 (501)
T PHA02558 386 MKKIAEGGKGIIIVASYGVFSTGISIKNLHHV-----------------I----------------------FAHPS--- 423 (501)
T ss_pred HHHHHhCCCCeEEEEEcceeccccccccccEE-----------------E----------------------EecCC---
Confidence 9999999999999998 899999999999998 3 11221
Q ss_pred ceecCHHHHHHHhcccCCCCCCCccEEEEE
Q psy14582 1076 WVELGALDVLQMLGRAGRPQYDTKGEGVLI 1105 (1689)
Q Consensus 1076 ~~~~s~~d~lQm~GRAGR~g~d~~G~~iil 1105 (1689)
-|...|+||+||+||++. ....++++
T Consensus 424 ---~s~~~~~QriGR~~R~~~-~K~~~~i~ 449 (501)
T PHA02558 424 ---KSKIIVLQSIGRVLRKHG-SKSIATVW 449 (501)
T ss_pred ---cchhhhhhhhhccccCCC-CCceEEEE
Confidence 246689999999999973 23345544
No 82
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.7e-21 Score=250.43 Aligned_cols=166 Identities=16% Similarity=0.230 Sum_probs=114.4
Q ss_pred eEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccceEEE--EEeechhhHHHHHHHhhHHHHHHHHH-HhCCCeEE
Q psy14582 847 RLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVALEQQ--YIGVTEKKALKRFQVMNDIVYEKVME-HAGRNQLL 922 (1689)
Q Consensus 847 riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~--~~~~~~~~~~~~~~~m~~~~~~~i~~-~~~~~~vL 922 (1689)
++.|||.|... .+++.+..+.. +. .-+..+|+..... .+..+... ++..+.. .+.+ +..+.|+|
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~l~----v~-~IPt~kp~~r~d~~~~i~~~~~~---K~~al~~----~i~~~~~~~~pvL 432 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYNME----VV-QIPTNRPIIRIDYPDKVFVTLDE---KYKAVIE----EVKERHETGRPVL 432 (790)
T ss_pred HHhccCCCChHHHHHHHHHhCCc----EE-ECCCCCCcccccCCCeEEcCHHH---HHHHHHH----HHHHHHhcCCCEE
Confidence 68899999863 23343333322 33 3356677543211 12222222 2222222 2222 34578999
Q ss_pred EEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHh
Q psy14582 923 VFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFA 1002 (1689)
Q Consensus 923 VFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~ 1002 (1689)
|||+|++.+..++..|...+... ...||.+.+.++..+...+.
T Consensus 433 If~~t~~~se~l~~~L~~~gi~~-------------------------------------~~L~~~~~~~e~~~i~~ag~ 475 (790)
T PRK09200 433 IGTGSIEQSETFSKLLDEAGIPH-------------------------------------NLLNAKNAAKEAQIIAEAGQ 475 (790)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCE-------------------------------------EEecCCccHHHHHHHHHcCC
Confidence 99999999999999998744332 34499999999988888887
Q ss_pred cCCeEEEEEcchhccCCCC---CCcc-----eeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCC
Q psy14582 1003 DRHIQVLVSTATLAWGVNL---PAHT-----VVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 1074 (1689)
Q Consensus 1003 ~g~i~VLVaT~vl~rGIDI---p~V~-----~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~ 1074 (1689)
.| +|+|||++++||+|| |+|. +| +|.++|..
T Consensus 476 ~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~V------------------------I~~d~p~s--------------- 514 (790)
T PRK09200 476 KG--AVTVATNMAGRGTDIKLGEGVHELGGLAV------------------------IGTERMES--------------- 514 (790)
T ss_pred CC--eEEEEccchhcCcCCCcccccccccCcEE------------------------EeccCCCC---------------
Confidence 77 799999999999999 6888 77 34455543
Q ss_pred cceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1075 RWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1075 ~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
...|.||+|||||.| ..|.++.+++..+
T Consensus 515 ------~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 515 ------RRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred ------HHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 789999999999999 8999999887644
No 83
>KOG0352|consensus
Probab=99.89 E-value=4.8e-22 Score=226.88 Aligned_cols=214 Identities=23% Similarity=0.296 Sum_probs=146.6
Q ss_pred hhccccCCceee----cCCchhHHHHHHHHHHHHHHhccccceEEEEecCCC--CHHHHHHHhhcCCCccEEEe-cCCCc
Q psy14582 809 VGNFGKDEIHLL----HDERGPVLEALIARTIRNIEATQEDVRLVGLSATLP--NYKDVATLLRIKPETGLFYF-DNSFR 881 (1689)
Q Consensus 809 v~liIiDEiHll----~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~--n~~dva~~L~~~~~~~~~~f-~~~~R 881 (1689)
++++++||+|++ ||.|..++...-.| +..+.+.-|+|+||-. --+|+..-|..... +-.| .+.||
T Consensus 142 L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LR------S~~~~vpwvALTATA~~~VqEDi~~qL~L~~P--VAiFkTP~FR 213 (641)
T KOG0352|consen 142 LRYIVVDEAHCVSQWGHDFRPDYLTLGSLR------SVCPGVPWVALTATANAKVQEDIAFQLKLRNP--VAIFKTPTFR 213 (641)
T ss_pred eeeEEechhhhHhhhccccCcchhhhhhHH------hhCCCCceEEeecccChhHHHHHHHHHhhcCc--HHhccCcchh
Confidence 889999999999 45666665544323 4467899999999976 35788877776432 2233 34455
Q ss_pred ccceEEEEEeechhhHH-HHHHHhhHHHHHHHHH-----HhC---CCeEEEEeCChHHHHHHHHHHHHhhhhccccchhh
Q psy14582 882 PVALEQQYIGVTEKKAL-KRFQVMNDIVYEKVME-----HAG---RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFL 952 (1689)
Q Consensus 882 pvpL~~~~~~~~~~~~~-~~~~~m~~~~~~~i~~-----~~~---~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl 952 (1689)
. +| |+.+..+... .-+..+.+.+...+-. ..+ .+--||||.||.+|+.+|-.|...+...-
T Consensus 214 ~-NL---FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~------ 283 (641)
T KOG0352|consen 214 D-NL---FYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAM------ 283 (641)
T ss_pred h-hh---hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchH------
Confidence 4 11 1111111111 1122222222221110 001 24689999999999999998876443221
Q ss_pred hcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhH
Q psy14582 953 REGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLV 1032 (1689)
Q Consensus 953 ~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~ 1032 (1689)
-+||||...+|..|.+.+.+|++.|++||..+++|+|-|+|++|
T Consensus 284 -------------------------------AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFV----- 327 (641)
T KOG0352|consen 284 -------------------------------AYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFV----- 327 (641)
T ss_pred -------------------------------HHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEE-----
Confidence 24999999999999999999999999999999999999999999
Q ss_pred HHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHH
Q psy14582 1033 EDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQ 1112 (1689)
Q Consensus 1033 ~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~ 1112 (1689)
+ +||+. -+..-|.|-.|||||.| ....|=++.+.++..
T Consensus 328 ------------i----------------------HW~~~------qn~AgYYQESGRAGRDG--k~SyCRLYYsR~D~~ 365 (641)
T KOG0352|consen 328 ------------I----------------------HWSPS------QNLAGYYQESGRAGRDG--KRSYCRLYYSRQDKN 365 (641)
T ss_pred ------------E----------------------ecCch------hhhHHHHHhccccccCC--CccceeeeecccchH
Confidence 2 33332 24788999999999999 788898888887766
Q ss_pred HHHHHh
Q psy14582 1113 YYLSLL 1118 (1689)
Q Consensus 1113 ~y~~ll 1118 (1689)
...-++
T Consensus 366 ~i~FLi 371 (641)
T KOG0352|consen 366 ALNFLV 371 (641)
T ss_pred HHHHHH
Confidence 554333
No 84
>KOG0351|consensus
Probab=99.89 E-value=3.8e-22 Score=259.73 Aligned_cols=213 Identities=25% Similarity=0.307 Sum_probs=165.3
Q ss_pred hhccccCCceee----cCCchhHHHHHHHHHHHHHHhccccceEEEEecCCC--CHHHHHHHhhcCCCccEEEecCCCcc
Q psy14582 809 VGNFGKDEIHLL----HDERGPVLEALIARTIRNIEATQEDVRLVGLSATLP--NYKDVATLLRIKPETGLFYFDNSFRP 882 (1689)
Q Consensus 809 v~liIiDEiHll----~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~--n~~dva~~L~~~~~~~~~~f~~~~Rp 882 (1689)
+.++||||+|++ ||.|..+....+.|. ..+.+.+++|+||.. --+||.+-|+.... ..|..+|-+
T Consensus 386 lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~------~~~~vP~iALTATAT~~v~~DIi~~L~l~~~---~~~~~sfnR 456 (941)
T KOG0351|consen 386 LALFVIDEAHCVSQWGHDFRPSYKRLGLLRI------RFPGVPFIALTATATERVREDVIRSLGLRNP---ELFKSSFNR 456 (941)
T ss_pred eEEEEecHHHHhhhhcccccHHHHHHHHHHh------hCCCCCeEEeehhccHHHHHHHHHHhCCCCc---ceecccCCC
Confidence 678999999988 556776655544442 245589999999986 46899999997643 266677766
Q ss_pred cceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHH
Q psy14582 883 VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVL 962 (1689)
Q Consensus 883 vpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l 962 (1689)
.+|...+..-..+... ..+...+.........||+|.+|++|+.++..|+..+.
T Consensus 457 ~NL~yeV~~k~~~~~~-------~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~------------------- 510 (941)
T KOG0351|consen 457 PNLKYEVSPKTDKDAL-------LDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGK------------------- 510 (941)
T ss_pred CCceEEEEeccCccch-------HHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhch-------------------
Confidence 6776555443321111 12233444556678999999999999999999987542
Q ss_pred HHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccce
Q psy14582 963 RTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQ 1042 (1689)
Q Consensus 963 ~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~ 1042 (1689)
..++|||||+..+|..|...|-.++++|+|||=++++|||.|+|+.|
T Consensus 511 ------------------~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~V--------------- 557 (941)
T KOG0351|consen 511 ------------------SAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFV--------------- 557 (941)
T ss_pred ------------------hhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEE---------------
Confidence 23456999999999999999999999999999999999999999999
Q ss_pred EEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCc
Q psy14582 1043 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQ 1121 (1689)
Q Consensus 1043 vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~ 1121 (1689)
..++||-+ ...|.|-+|||||.| ....|+++....+......++...
T Consensus 558 ---------iH~~lPks---------------------~E~YYQE~GRAGRDG--~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 558 ---------IHYSLPKS---------------------FEGYYQEAGRAGRDG--LPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred ---------EECCCchh---------------------HHHHHHhccccCcCC--CcceeEEecchhHHHHHHHHHHcc
Confidence 45666644 889999999999999 678999999988887777777655
No 85
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=1.2e-22 Score=255.87 Aligned_cols=251 Identities=21% Similarity=0.210 Sum_probs=140.5
Q ss_pred hhccccCCceeecC--CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCC--Ccccc
Q psy14582 809 VGNFGKDEIHLLHD--ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNS--FRPVA 884 (1689)
Q Consensus 809 v~liIiDEiHll~d--~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~--~Rpvp 884 (1689)
+++||+||.|.... ..++.+.. |.+........+.++|++||| |..+.+....... ......... -++.|
T Consensus 94 l~lIIVDEeh~~sykq~~~p~y~a---r~~a~~ra~~~~~~vil~SAT-Psles~~~~~~g~--~~~~~l~~r~~~~~~p 167 (505)
T TIGR00595 94 LGLIIVDEEHDSSYKQEEGPRYHA---RDVAVYRAKKFNCPVVLGSAT-PSLESYHNAKQKA--YRLLVLTRRVSGRKPP 167 (505)
T ss_pred CCEEEEECCCccccccccCCCCcH---HHHHHHHHHhcCCCEEEEeCC-CCHHHHHHHhcCC--eEEeechhhhcCCCCC
Confidence 78999999997753 33443221 111111223467899999999 5555554443221 001111111 11222
Q ss_pred eEEEEEeechhhHHHHHHHhhHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhh----------
Q psy14582 885 LEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAG-RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLR---------- 953 (1689)
Q Consensus 885 L~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~-~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~---------- 953 (1689)
...++........ ..+...+++.+.+... ++|+|||+|+|..+-.+...=+.....+...+..+.
T Consensus 168 -~v~vid~~~~~~~---~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~C 243 (505)
T TIGR00595 168 -EVKLIDMRKEPRQ---SFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRC 243 (505)
T ss_pred -eEEEEeccccccc---CCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEc
Confidence 2333332221110 1233445555555443 579999999998654333222221111111111110
Q ss_pred ----------------------cCchhHHHHHHhhhhccchhhhcccC-CceeEeccCCCHHHH--HHHHHHHhcCCeEE
Q psy14582 954 ----------------------EGSASMEVLRTEADQVKNGELRDLLP-YGFAIHHAGMTRVDR--TLVEDLFADRHIQV 1008 (1689)
Q Consensus 954 ----------------------~~~~~~e~l~~~~~~~~~~~L~~~l~-~Gi~~hHagl~~~dR--~~ve~~F~~g~i~V 1008 (1689)
....+.+.+. +.|+..++ ..|...|++++...+ ..+++.|++|+++|
T Consensus 244 h~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~--------e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~I 315 (505)
T TIGR00595 244 HYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVE--------EELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADI 315 (505)
T ss_pred CCCcCcCCCCCCCCCCCCCeeEeecccHHHHH--------HHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCE
Confidence 0001111111 33455554 578888999987766 88999999999999
Q ss_pred EEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHh
Q psy14582 1009 LVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQML 1088 (1689)
Q Consensus 1009 LVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~ 1088 (1689)
||+|+++++|+|+|+|++| +--. ...+++.|.. +-.+.....|+|++
T Consensus 316 LVgT~~i~kG~d~~~v~lV-----------------~vl~-aD~~l~~pd~---------------ra~E~~~~ll~q~~ 362 (505)
T TIGR00595 316 LIGTQMIAKGHHFPNVTLV-----------------GVLD-ADSGLHSPDF---------------RAAERGFQLLTQVA 362 (505)
T ss_pred EEeCcccccCCCCCcccEE-----------------EEEc-CcccccCccc---------------chHHHHHHHHHHHH
Confidence 9999999999999999988 2100 0112233322 11123467899999
Q ss_pred cccCCCCCCCccEEEEEecCCcHH
Q psy14582 1089 GRAGRPQYDTKGEGVLITNHSELQ 1112 (1689)
Q Consensus 1089 GRAGR~g~d~~G~~iil~~~~~~~ 1112 (1689)
|||||.+ ..|.++|.+...+..
T Consensus 363 GRagR~~--~~g~viiqt~~p~~~ 384 (505)
T TIGR00595 363 GRAGRAE--DPGQVIIQTYNPNHP 384 (505)
T ss_pred hccCCCC--CCCEEEEEeCCCCCH
Confidence 9999976 789999998776543
No 86
>PRK13766 Hef nuclease; Provisional
Probab=99.88 E-value=3.2e-21 Score=258.50 Aligned_cols=117 Identities=21% Similarity=0.376 Sum_probs=90.3
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
+++++||||.+++.|..++..|...+.....+ . ..+-..-|+||++.+|..
T Consensus 364 ~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~---~--------------------------g~~~~~~~~~~~~~~r~~ 414 (773)
T PRK13766 364 PDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRF---V--------------------------GQASKDGDKGMSQKEQIE 414 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHhCCCceEEE---E--------------------------ccccccccCCCCHHHHHH
Confidence 46799999999999999999886543322111 0 000000167899999999
Q ss_pred HHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcc
Q psy14582 997 VEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRW 1076 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~ 1076 (1689)
+.+.|++|.++|||||+++++|+|+|++++| | .||+.
T Consensus 415 ~~~~F~~g~~~vLvaT~~~~eGldi~~~~~V-----------------I----------------------~yd~~---- 451 (773)
T PRK13766 415 ILDKFRAGEFNVLVSTSVAEEGLDIPSVDLV-----------------I----------------------FYEPV---- 451 (773)
T ss_pred HHHHHHcCCCCEEEECChhhcCCCcccCCEE-----------------E----------------------EeCCC----
Confidence 9999999999999999999999999999998 2 46653
Q ss_pred eecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1077 VELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1077 ~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
.++..|+||+||+||.| .|.+++++....
T Consensus 452 --~s~~r~iQR~GR~gR~~---~~~v~~l~~~~t 480 (773)
T PRK13766 452 --PSEIRSIQRKGRTGRQE---EGRVVVLIAKGT 480 (773)
T ss_pred --CCHHHHHHHhcccCcCC---CCEEEEEEeCCC
Confidence 46889999999999986 588888887643
No 87
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.87 E-value=6.2e-20 Score=236.55 Aligned_cols=325 Identities=18% Similarity=0.201 Sum_probs=228.9
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQ 888 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~ 888 (1689)
++++|+||+| +|.-..+.++.-++..+....++.|+|.+|||+. .+.++++++..+ ++. ..-|..|++.+
T Consensus 163 ys~vIiDEaH----ERSl~tDilLgllk~~~~~rr~DLKiIimSATld-~~rfs~~f~~ap---vi~--i~GR~fPVei~ 232 (845)
T COG1643 163 YSVVIIDEAH----ERSLNTDILLGLLKDLLARRRDDLKLIIMSATLD-AERFSAYFGNAP---VIE--IEGRTYPVEIR 232 (845)
T ss_pred CCEEEEcchh----hhhHHHHHHHHHHHHHHhhcCCCceEEEEecccC-HHHHHHHcCCCC---EEE--ecCCccceEEE
Confidence 8999999999 7877788887777776677777899999999986 688999998643 444 34466777777
Q ss_pred EEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhh
Q psy14582 889 YIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQ 968 (1689)
Q Consensus 889 ~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~ 968 (1689)
|......... ....+...+... .....+.+|||.+...+...+++.|.+.....
T Consensus 233 Y~~~~~~d~~-l~~ai~~~v~~~--~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~----------------------- 286 (845)
T COG1643 233 YLPEAEADYI-LLDAIVAAVDIH--LREGSGSILVFLPGQREIERTAEWLEKAELGD----------------------- 286 (845)
T ss_pred ecCCCCcchh-HHHHHHHHHHHh--ccCCCCCEEEECCcHHHHHHHHHHHHhccccC-----------------------
Confidence 7443322221 112222222111 11235789999999999999999998611100
Q ss_pred ccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcc
Q psy14582 969 VKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTA 1048 (1689)
Q Consensus 969 ~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~ 1048 (1689)
..-|--.||.|+..++..|++--..|+-+|++|||+++.+|.||+|++| +++|..++
T Consensus 287 ----------~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~V--------IDsG~ak~----- 343 (845)
T COG1643 287 ----------DLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYV--------IDSGLAKE----- 343 (845)
T ss_pred ----------CcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEE--------ecCCcccc-----
Confidence 0112334999999999999999999988999999999999999999999 44444442
Q ss_pred cccccCCCCCceEEEeceeeecCCCCc----ceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCcCC-
Q psy14582 1049 TLAWGVNLPAHTVIIKGTQIYNPEKGR----WVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLP- 1123 (1689)
Q Consensus 1049 TLa~GvNLPa~~VII~gt~~yd~~~~~----~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p- 1123 (1689)
..||+..|- .+++|-.+..||.|||||.+ .|.||-+.+.. .|..+...+.|
T Consensus 344 ------------------~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse~---~~~~~~~~t~PE 399 (845)
T COG1643 344 ------------------KRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSEE---DFLAFPEFTLPE 399 (845)
T ss_pred ------------------cccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCHH---HHHhcccCCChh
Confidence 568888773 34789999999999999986 89999998763 34466555555
Q ss_pred -cccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCChhhhhhhHHHHHHHHHHHHHc
Q psy14582 1124 -VESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERS 1202 (1689)
Q Consensus 1124 -ieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~~lv~~al~~L~~~ 1202 (1689)
..+.|.+ .+- +|. -+|++ .++...++++..-...+..|+..|...
T Consensus 400 IlrtdLs~--------------------~vL---------~l~----~~G~~-~d~~~f~fld~P~~~~i~~A~~~L~~L 445 (845)
T COG1643 400 ILRTDLSG--------------------LVL---------QLK----SLGIG-QDIAPFPFLDPPPEAAIQAALTLLQEL 445 (845)
T ss_pred hhhcchHH--------------------HHH---------HHH----hcCCC-CCcccCccCCCCChHHHHHHHHHHHHc
Confidence 1222211 111 111 13432 112334556666667899999999999
Q ss_pred CCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcC
Q psy14582 1203 GLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLS 1256 (1689)
Q Consensus 1203 ~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s 1256 (1689)
|++.-+. .+|++|+.||.+++++..+.+....-...+. .+.+.|.|+-
T Consensus 446 GAld~~g-----~LT~lG~~ms~lpldprLA~mLl~a~~~g~~-~e~~~Ias~L 493 (845)
T COG1643 446 GALDDSG-----KLTPLGKQMSLLPLDPRLARMLLTAPEGGCL-GEAATIASML 493 (845)
T ss_pred CCcCCCC-----CCCHHHHHHHhCCCChHHHHHHHhccccCcH-HHHHHHHHhh
Confidence 9998542 4899999999999999999999887765543 3455554443
No 88
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.87 E-value=3.2e-20 Score=236.42 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=110.5
Q ss_pred ceEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccceEEE--EEeechhhHHHHHHHhhHHHHHHHHH-HhCCCeE
Q psy14582 846 VRLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVALEQQ--YIGVTEKKALKRFQVMNDIVYEKVME-HAGRNQL 921 (1689)
Q Consensus 846 ~riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~--~~~~~~~~~~~~~~~m~~~~~~~i~~-~~~~~~v 921 (1689)
.++.|||+|... ..++.+..+.. +..-+..+|+..... .+..+...+ +.++. ..+.+ +..+.|+
T Consensus 360 ~kl~GmTGTa~~~~~Ef~~iY~l~-----v~~IPt~kp~~r~d~~d~i~~~~~~K---~~ai~----~~i~~~~~~~~pv 427 (762)
T TIGR03714 360 NKLSGMTGTGKVAEKEFIETYSLS-----VVKIPTNKPIIRIDYPDKIYATLPEK---LMATL----EDVKEYHETGQPV 427 (762)
T ss_pred chhcccCCCChhHHHHHHHHhCCC-----EEEcCCCCCeeeeeCCCeEEECHHHH---HHHHH----HHHHHHhhCCCCE
Confidence 468899999652 34444433322 234466677543221 122222222 22222 22222 3457899
Q ss_pred EEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHH
Q psy14582 922 LVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLF 1001 (1689)
Q Consensus 922 LVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F 1001 (1689)
||||+|+..++.++..|...+... ...||.+.+.+|..+...+
T Consensus 428 LIft~s~~~se~ls~~L~~~gi~~-------------------------------------~~L~a~~~~~E~~ii~~ag 470 (762)
T TIGR03714 428 LLITGSVEMSEIYSELLLREGIPH-------------------------------------NLLNAQNAAKEAQIIAEAG 470 (762)
T ss_pred EEEECcHHHHHHHHHHHHHCCCCE-------------------------------------EEecCCChHHHHHHHHHcC
Confidence 999999999999999987644332 3349999999998888877
Q ss_pred hcCCeEEEEEcchhccCCCCC---------CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCC
Q psy14582 1002 ADRHIQVLVSTATLAWGVNLP---------AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 1072 (1689)
Q Consensus 1002 ~~g~i~VLVaT~vl~rGIDIp---------~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~ 1072 (1689)
+.| .|+|||++++||+||+ ++.+| + .|+++
T Consensus 471 ~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vI-----------------i----------------------t~~~p 509 (762)
T TIGR03714 471 QKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVI-----------------G----------------------TERME 509 (762)
T ss_pred CCC--eEEEEccccccccCCCCCccccccCCeEEE-----------------E----------------------ecCCC
Confidence 777 7999999999999999 66665 2 13333
Q ss_pred CCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1073 KGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1073 ~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
.. ..+ .||+|||||.| .+|.++.+++..+
T Consensus 510 s~------rid-~qr~GRtGRqG--~~G~s~~~is~eD 538 (762)
T TIGR03714 510 NS------RVD-LQLRGRSGRQG--DPGSSQFFVSLED 538 (762)
T ss_pred Cc------HHH-HHhhhcccCCC--CceeEEEEEccch
Confidence 21 334 89999999999 8999999988654
No 89
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.87 E-value=1.1e-20 Score=255.76 Aligned_cols=68 Identities=25% Similarity=0.248 Sum_probs=57.4
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
...+|+|+|+.++|.++ .|+|++++||||||||. |++|++..+.. .+.+++||+|||+||.|++..+.
T Consensus 75 ~g~~p~~iQ~~~i~~il-~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----------~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVL-RGDSFAIIAPTGVGKTT-FGLAMSLFLAK----------KGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred cCCCCcHHHHHHHHHHh-CCCeEEEECCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeCHHHHHHHHHHHHH
Confidence 34579999999999998 89999999999999997 77787766542 24689999999999999986653
No 90
>KOG0349|consensus
Probab=99.87 E-value=6.3e-22 Score=225.45 Aligned_cols=111 Identities=16% Similarity=0.332 Sum_probs=94.9
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
...++||||.|+.+|..+.+.+.+.+.. .+.+-..|++..+.+|..
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~----------------------------------~~scvclhgDrkP~Erk~ 549 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGK----------------------------------HYSCVCLHGDRKPDERKA 549 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCc----------------------------------cceeEEEecCCChhHHHH
Confidence 3578999999999999999888764321 234556699999999999
Q ss_pred HHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcc
Q psy14582 997 VEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRW 1076 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~ 1076 (1689)
-++.|+.+.++.||||++++||+||.++.++ .+|.||..
T Consensus 550 nle~Fkk~dvkflictdvaargldi~g~p~~------------------------invtlpd~----------------- 588 (725)
T KOG0349|consen 550 NLESFKKFDVKFLICTDVAARGLDITGLPFM------------------------INVTLPDD----------------- 588 (725)
T ss_pred HHHhhhhcCeEEEEEehhhhccccccCCceE------------------------EEEecCcc-----------------
Confidence 9999999999999999999999999999999 67788866
Q ss_pred eecCHHHHHHHhcccCCCCCCCccEEEEEecC
Q psy14582 1077 VELGALDVLQMLGRAGRPQYDTKGEGVLITNH 1108 (1689)
Q Consensus 1077 ~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~ 1108 (1689)
-..|+||+||.||+. +-|-+|.++..
T Consensus 589 ----k~nyvhrigrvgrae--rmglaislvat 614 (725)
T KOG0349|consen 589 ----KTNYVHRIGRVGRAE--RMGLAISLVAT 614 (725)
T ss_pred ----cchhhhhhhccchhh--hcceeEEEeec
Confidence 458999999999986 78999877654
No 91
>KOG0329|consensus
Probab=99.86 E-value=2.9e-22 Score=215.56 Aligned_cols=79 Identities=23% Similarity=0.386 Sum_probs=67.3
Q ss_pred cHHHHHhcc-CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchh
Q psy14582 469 PRYVQHAFE-DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS 547 (1689)
Q Consensus 469 p~~~~~~f~-g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtre 547 (1689)
|+.++.... ||++|..+|.+++|.++ -|-|+|+.|..|.|||.+|+|..|+++... + ....+++++.||+
T Consensus 51 pellraivdcgfehpsevqhecipqai-lgmdvlcqaksgmgktavfvl~tlqqiepv---~-----g~vsvlvmchtre 121 (387)
T KOG0329|consen 51 PELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQIEPV---D-----GQVSVLVMCHTRE 121 (387)
T ss_pred HHHHHHHHhccCCCchHhhhhhhhHHh-hcchhheecccCCCceeeeehhhhhhcCCC---C-----CeEEEEEEeccHH
Confidence 555555555 99999999999999998 699999999999999999999999988743 1 3468999999999
Q ss_pred hhHhhhhcc
Q psy14582 548 LVQEMVGNF 556 (1689)
Q Consensus 548 La~Qi~~~f 556 (1689)
||-|+..++
T Consensus 122 lafqi~~ey 130 (387)
T KOG0329|consen 122 LAFQISKEY 130 (387)
T ss_pred HHHHHHHHH
Confidence 999997443
No 92
>PRK09694 helicase Cas3; Provisional
Probab=99.86 E-value=4.8e-20 Score=241.37 Aligned_cols=71 Identities=23% Similarity=0.267 Sum_probs=55.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
+..+|+|+|..+..... .+..+|+.||||||||.++++.+.+.+... ...+++|.+||+++++|++.++.
T Consensus 283 ~~~~p~p~Q~~~~~~~~-~pgl~ileApTGsGKTEAAL~~A~~l~~~~---------~~~gi~~aLPT~Atan~m~~Rl~ 352 (878)
T PRK09694 283 NGYQPRQLQTLVDALPL-QPGLTIIEAPTGSGKTEAALAYAWRLIDQG---------LADSIIFALPTQATANAMLSRLE 352 (878)
T ss_pred CCCCChHHHHHHHhhcc-CCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---------CCCeEEEECcHHHHHHHHHHHHH
Confidence 34589999998854322 467899999999999999988876544321 22489999999999999997764
Q ss_pred c
Q psy14582 558 K 558 (1689)
Q Consensus 558 k 558 (1689)
+
T Consensus 353 ~ 353 (878)
T PRK09694 353 A 353 (878)
T ss_pred H
Confidence 3
No 93
>KOG0923|consensus
Probab=99.85 E-value=5.5e-20 Score=219.91 Aligned_cols=366 Identities=18% Similarity=0.209 Sum_probs=254.3
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQ 888 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~ 888 (1689)
+++|||||+| +|.-..+.++.-... +....+..+++..|||+. ++.+..|+...+ +|.+.. |..|+..+
T Consensus 379 YSViiiDEAH----ERTL~TDILfgLvKD-Iar~RpdLKllIsSAT~D-AekFS~fFDdap---IF~iPG--RRyPVdi~ 447 (902)
T KOG0923|consen 379 YSVIIVDEAH----ERTLHTDILFGLVKD-IARFRPDLKLLISSATMD-AEKFSAFFDDAP---IFRIPG--RRYPVDIF 447 (902)
T ss_pred eeEEEeehhh----hhhhhhhHHHHHHHH-HHhhCCcceEEeeccccC-HHHHHHhccCCc---EEeccC--cccceeee
Confidence 7899999999 566666665544333 334568999999999986 789999998654 666655 55677777
Q ss_pred EEeechhhHHHHHHHhhHHHHHHHHHH---hCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHh
Q psy14582 889 YIGVTEKKALKRFQVMNDIVYEKVMEH---AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTE 965 (1689)
Q Consensus 889 ~~~~~~~~~~~~~~~m~~~~~~~i~~~---~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~ 965 (1689)
|-..++..+.. .++..+++. .+.+-+|||.....+.+.+...|.+.+..-+.
T Consensus 448 Yt~~PEAdYld-------Aai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGs------------------ 502 (902)
T KOG0923|consen 448 YTKAPEADYLD-------AAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGS------------------ 502 (902)
T ss_pred cccCCchhHHH-------HHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhcc------------------
Confidence 77766655532 334444432 23578999999999988888877765432111
Q ss_pred hhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEE
Q psy14582 966 ADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLV 1045 (1689)
Q Consensus 966 ~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLV 1045 (1689)
..++++ |.-.||.|+...+..|++--..|..+|++||++++..|.|++|.+| +++|.++.
T Consensus 503 -------ki~eli---v~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yV--------iDpGf~K~-- 562 (902)
T KOG0923|consen 503 -------KIRELI---VLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYV--------IDPGFVKQ-- 562 (902)
T ss_pred -------ccceEE---EeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEE--------ecCccccc--
Confidence 111111 2234999999999999999999999999999999999999999999 44444432
Q ss_pred EcccccccCCCCCceEEEeceeeecCCCCc----ceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhC-
Q psy14582 1046 STATLAWGVNLPAHTVIIKGTQIYNPEKGR----WVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNH- 1120 (1689)
Q Consensus 1046 aT~TLa~GvNLPa~~VII~gt~~yd~~~~~----~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~- 1120 (1689)
..|+|++|. .+++|-.+..||+|||||.| +|+|+-+.+. ..|...|..
T Consensus 563 ---------------------nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~---~aY~~eLE~~ 615 (902)
T KOG0923|consen 563 ---------------------NSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTA---WAYEHELEEM 615 (902)
T ss_pred ---------------------cCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeech---hhhhhhhccC
Confidence 468888884 45899999999999999998 8999998874 345554442
Q ss_pred cCCcccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCChhhhhhhHHHHHHHHHHHH
Q psy14582 1121 QLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLE 1200 (1689)
Q Consensus 1121 ~~pieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~~lv~~al~~L~ 1200 (1689)
+.| | -....|...+..--++|. .++-..+++...-.+.+..||..|.
T Consensus 616 t~P-E-IqRtnL~nvVL~LkSLGI-------------------------------~Dl~~FdFmDpPp~etL~~aLE~Ly 662 (902)
T KOG0923|consen 616 TVP-E-IQRTNLGNVVLLLKSLGI-------------------------------HDLIHFDFLDPPPTETLLKALEQLY 662 (902)
T ss_pred CCc-c-eeeccchhHHHHHHhcCc-------------------------------chhcccccCCCCChHHHHHHHHHHH
Confidence 223 0 001112111111111211 1122233444455567889999999
Q ss_pred HcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCChHHHHHHHHHHhhCC
Q psy14582 1201 RSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAP 1280 (1689)
Q Consensus 1201 ~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~~E~~~l~~l~~~~p 1280 (1689)
..|.+.- ...+|.+||.||.|+++|...+++..+=+-.|+ .+++.|.++.+.+..+..|+.++..-..=..+
T Consensus 663 aLGALn~-----~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs-~EiitiaamlS~~~svfyrpk~~~v~ad~a~~-- 734 (902)
T KOG0923|consen 663 ALGALNH-----LGELTKLGRRMAEFPVDPMLSKMIVASEKYKCS-EEIITIAAMLSVGASVFYRPKDKQVHADNARK-- 734 (902)
T ss_pred Hhhcccc-----ccchhhhhhhhhhcCCCHHHHhHHhhhccccch-HHHHHHHHHHhcCchheecchhhhhhhhhhhh--
Confidence 9999863 358899999999999999999999887776665 68999999999999999999887543222111
Q ss_pred CCCCCCCCChhHHHHHHHHHHHh
Q psy14582 1281 IPIKESTDEPSAKVNILLQAYIS 1303 (1689)
Q Consensus 1281 ~~~~~~~~~~~~K~~~Llqa~is 1303 (1689)
.+..+..--.+||+.|.+
T Consensus 735 -----~f~~~~gDhi~~L~vyn~ 752 (902)
T KOG0923|consen 735 -----NFEEPVGDHIVLLNVYNQ 752 (902)
T ss_pred -----ccCCCCcchhhhhHHHHH
Confidence 123333445566766654
No 94
>KOG0353|consensus
Probab=99.85 E-value=2.5e-20 Score=209.20 Aligned_cols=168 Identities=21% Similarity=0.291 Sum_probs=121.1
Q ss_pred hhccccCCceeec----CCchhHHHHHHHHHHHHHHhccccceEEEEecCCCC--HHHHHHHhhcCCCccEEEecCCCcc
Q psy14582 809 VGNFGKDEIHLLH----DERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN--YKDVATLLRIKPETGLFYFDNSFRP 882 (1689)
Q Consensus 809 v~liIiDEiHll~----d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dva~~L~~~~~~~~~~f~~~~Rp 882 (1689)
+.+|-+||+|+-. |.|..+ ..+ ..+....++..++||+||-.| ..|+.+.|.... .|.|...|..
T Consensus 216 ~~~iaidevhccsqwghdfr~dy-~~l-----~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~---~~tf~a~fnr 286 (695)
T KOG0353|consen 216 FKLIAIDEVHCCSQWGHDFRPDY-KAL-----GILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA---AFTFRAGFNR 286 (695)
T ss_pred eEEEeecceeehhhhCcccCcch-HHH-----HHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh---hheeecccCC
Confidence 7889999999873 334333 211 112234678999999999885 567777777643 6778888766
Q ss_pred cceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHH
Q psy14582 883 VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVL 962 (1689)
Q Consensus 883 vpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l 962 (1689)
.+|...+..-+..... ..+.+...+.....+..-||||-|+++|++++..|...+...
T Consensus 287 ~nl~yev~qkp~n~dd-----~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a----------------- 344 (695)
T KOG0353|consen 287 PNLKYEVRQKPGNEDD-----CIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHA----------------- 344 (695)
T ss_pred CCceeEeeeCCCChHH-----HHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccc-----------------
Confidence 5776655544332211 011122222233345678999999999999999998765433
Q ss_pred HHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCccee
Q psy14582 963 RTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVV 1027 (1689)
Q Consensus 963 ~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V 1027 (1689)
+-+|+.|.+.||.-+-+.+..|+|+|+|||-.+++|||-|+|++|
T Consensus 345 --------------------~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfv 389 (695)
T KOG0353|consen 345 --------------------GAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFV 389 (695)
T ss_pred --------------------cccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEE
Confidence 334999999999999999999999999999999999999999999
No 95
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=2.5e-19 Score=228.46 Aligned_cols=110 Identities=12% Similarity=0.122 Sum_probs=83.2
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.+.++||||.+...+..++..|. +.+.||+++..+|..
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~------------------------------------------~~~I~G~ts~~ER~~ 532 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG------------------------------------------KPFIYGPTSQQERMQ 532 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC------------------------------------------CceEECCCCHHHHHH
Confidence 56799999999887766666541 223499999999999
Q ss_pred HHHHHhcC-CeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCc
Q psy14582 997 VEDLFADR-HIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGR 1075 (1689)
Q Consensus 997 ve~~F~~g-~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~ 1075 (1689)
+++.|+.| .+++||+|+++.+|+|+|++++| |- +++..
T Consensus 533 il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vv-----------------I~----------------------~s~~~-- 571 (732)
T TIGR00603 533 ILQNFQHNPKVNTIFLSKVGDTSIDLPEANVL-----------------IQ----------------------ISSHY-- 571 (732)
T ss_pred HHHHHHhCCCccEEEEecccccccCCCCCCEE-----------------EE----------------------eCCCC--
Confidence 99999875 88999999999999999999998 31 22211
Q ss_pred ceecCHHHHHHHhcccCCCCCCCc-----cEEEEEecCCcHH
Q psy14582 1076 WVELGALDVLQMLGRAGRPQYDTK-----GEGVLITNHSELQ 1112 (1689)
Q Consensus 1076 ~~~~s~~d~lQm~GRAGR~g~d~~-----G~~iil~~~~~~~ 1112 (1689)
-|...|+||+||++|++.+.. ...|.+++.+..+
T Consensus 572 ---gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 572 ---GSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred ---CCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 158899999999999984322 2236666665543
No 96
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.85 E-value=1.7e-19 Score=228.40 Aligned_cols=168 Identities=16% Similarity=0.198 Sum_probs=113.7
Q ss_pred eEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccceEEEE-EeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEE
Q psy14582 847 RLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVALEQQY-IGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVF 924 (1689)
Q Consensus 847 riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~-~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVF 924 (1689)
++.|||+|... ..++.+..+.. + ..-+..+|+.....- ..+... ..++.++.+.+ ...+..+.|+|||
T Consensus 342 kl~GmTGTa~te~~E~~~iY~l~----v-v~IPtnkp~~R~d~~d~i~~t~--~~k~~ai~~~i---~~~~~~grpvLV~ 411 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYNLE----V-VVVPTNRPVIRKDLSDLVYKTE--EEKWKAVVDEI---KERHAKGQPVLVG 411 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhCCC----E-EEeCCCCCeeeeeCCCeEEcCH--HHHHHHHHHHH---HHHHhcCCCEEEE
Confidence 67899999873 34444444332 2 334566664322110 111111 11222222222 2234567899999
Q ss_pred eCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcC
Q psy14582 925 VHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADR 1004 (1689)
Q Consensus 925 v~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g 1004 (1689)
|+|...++.++..|...+... ...||+ +.+|+..+..|+.+
T Consensus 412 t~si~~se~ls~~L~~~gi~~-------------------------------------~~Lna~--q~~rEa~ii~~ag~ 452 (745)
T TIGR00963 412 TTSVEKSELLSNLLKERGIPH-------------------------------------NVLNAK--NHEREAEIIAQAGR 452 (745)
T ss_pred eCcHHHHHHHHHHHHHcCCCe-------------------------------------EEeeCC--hHHHHHHHHHhcCC
Confidence 999999999999998754332 233887 78899999999999
Q ss_pred CeEEEEEcchhccCCCCCC-------cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcce
Q psy14582 1005 HIQVLVSTATLAWGVNLPA-------HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWV 1077 (1689)
Q Consensus 1005 ~i~VLVaT~vl~rGIDIp~-------V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~ 1077 (1689)
...|+|||++++||+||+. ..+| | |..+|
T Consensus 453 ~g~VtIATnmAgRGtDI~l~~V~~~GGl~V-----------------I-------~t~~p-------------------- 488 (745)
T TIGR00963 453 KGAVTIATNMAGRGTDIKLEEVKELGGLYV-----------------I-------GTERH-------------------- 488 (745)
T ss_pred CceEEEEeccccCCcCCCccchhhcCCcEE-----------------E-------ecCCC--------------------
Confidence 9999999999999999987 3355 2 33333
Q ss_pred ecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1078 ELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1078 ~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
-|...+.|+.|||||.| .+|.+..+.+..+
T Consensus 489 -~s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 489 -ESRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred -CcHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 34789999999999999 8899999887654
No 97
>KOG0922|consensus
Probab=99.84 E-value=2.4e-19 Score=218.35 Aligned_cols=359 Identities=19% Similarity=0.244 Sum_probs=246.5
Q ss_pred CCCcEEEEEcc---chhHHHH----HhhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHH
Q psy14582 790 ADEFKIIYVAP---MRSLVQE----MVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVA 862 (1689)
Q Consensus 790 ~~~~kvVylaP---~r~L~~q----~v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva 862 (1689)
.+..++.|++- .|+...+ .+++||+||+| +|.-..+.++.-++. +-+..+..|+|.+|||+. ++.+.
T Consensus 138 s~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAH----ERsl~TDiLlGlLKk-i~~~R~~LklIimSATld-a~kfS 211 (674)
T KOG0922|consen 138 SKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAH----ERSLHTDILLGLLKK-ILKKRPDLKLIIMSATLD-AEKFS 211 (674)
T ss_pred CCceeEEEecchHHHHHHhcCCccccccEEEEechh----hhhhHHHHHHHHHHH-HHhcCCCceEEEEeeeec-HHHHH
Confidence 34566777765 3333321 38999999999 777777777655444 344566799999999986 78899
Q ss_pred HHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhh
Q psy14582 863 TLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMC 942 (1689)
Q Consensus 863 ~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~ 942 (1689)
+|+...+ ++.... |..|++..|...+...+... ....+. .|....+.+-+|||.+.+.+.+.++..|.+..
T Consensus 212 ~yF~~a~---i~~i~G--R~fPVei~y~~~p~~dYv~a---~~~tv~-~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~ 282 (674)
T KOG0922|consen 212 EYFNNAP---ILTIPG--RTFPVEILYLKEPTADYVDA---ALITVI-QIHLTEPPGDILVFLTGQEEIEAACELLRERA 282 (674)
T ss_pred HHhcCCc---eEeecC--CCCceeEEeccCCchhhHHH---HHHHHH-HHHccCCCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 9998743 444444 66677777766554444321 111122 22233456789999999999999999998754
Q ss_pred hhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCC
Q psy14582 943 LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 943 ~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp 1022 (1689)
...... .+.-+-..||+|+.+++..|++--..|..+|+++|++++..+.|+
T Consensus 283 ~~~~~~-----------------------------~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~ 333 (674)
T KOG0922|consen 283 KSLPED-----------------------------CPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTID 333 (674)
T ss_pred hhcccc-----------------------------CcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEec
Confidence 321110 111123349999999999999999999999999999999999999
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCc----ceecCHHHHHHHhcccCCCCCCC
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGR----WVELGALDVLQMLGRAGRPQYDT 1098 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~----~~~~s~~d~lQm~GRAGR~g~d~ 1098 (1689)
++.+| +++|.++. ..|+|..|. -+++|-....||.|||||.|
T Consensus 334 GI~YV--------VDsG~vK~-----------------------~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~--- 379 (674)
T KOG0922|consen 334 GIRYV--------VDSGFVKQ-----------------------KKYNPRTGLDSLIVVPISKASANQRAGRAGRTG--- 379 (674)
T ss_pred ceEEE--------EcCCceEE-----------------------EeeccccCccceeEEechHHHHhhhcccCCCCC---
Confidence 99999 55555553 568888874 34789999999999999986
Q ss_pred ccEEEEEecCCcHHHHHHHhhCcCCcccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccc
Q psy14582 1099 KGEGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDAL 1178 (1689)
Q Consensus 1099 ~G~~iil~~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~ 1178 (1689)
.|+|+-+.+.+ .|.++..++.| ||.. .| |+.++|.-. -+|+. ++
T Consensus 380 pGkcyRLYte~---~~~~~~~~~~P---------------EI~R---~~-------Ls~~vL~Lk------algi~--d~ 423 (674)
T KOG0922|consen 380 PGKCYRLYTES---AYDKMPLQTVP---------------EIQR---VN-------LSSAVLQLK------ALGIN--DP 423 (674)
T ss_pred CceEEEeeeHH---HHhhcccCCCC---------------ceee---ec-------hHHHHHHHH------hcCCC--Cc
Confidence 89999998754 35666666655 2211 01 111222100 12332 22
Q ss_pred cCChhhhhhhHHHHHHHHHHHHHcCCceeccCCCceeecc-ccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCc
Q psy14582 1179 KEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTE-LGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSG 1257 (1689)
Q Consensus 1179 ~~d~~l~~~~~~lv~~al~~L~~~~~i~~~~~~~~~~~t~-lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~ 1257 (1689)
...+++...-.+.+..|+..|...|.|+-+ | .+|+ +|+.+|.+++.+...+++..+-.-.|++ +++.+.++-+
T Consensus 424 l~F~f~d~P~~~~l~~AL~~L~~lgald~~---g--~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~-e~l~i~a~Ls 497 (674)
T KOG0922|consen 424 LRFPFIDPPPPEALEEALEELYSLGALDDR---G--KLTSPLGRQMAELPLEPHLSKMLLKSSELGCSE-EILTIAAMLS 497 (674)
T ss_pred ccCCCCCCCChHHHHHHHHHHHhcCcccCc---C--CcCchHHhhhhhcCCCcchhhhhhhccccCCcc-hhhhheeeee
Confidence 334455566667899999999999999832 3 3455 9999999999999999998887766664 6777666654
Q ss_pred ccccCcCChHHH
Q psy14582 1258 EFRHITVREEEK 1269 (1689)
Q Consensus 1258 Ef~~i~vR~~E~ 1269 (1689)
-.++..|..++
T Consensus 498 -v~~~f~~p~~~ 508 (674)
T KOG0922|consen 498 -VQSVFSRPKDK 508 (674)
T ss_pred -ccceecCccch
Confidence 44555554443
No 98
>KOG0924|consensus
Probab=99.82 E-value=1.6e-18 Score=207.22 Aligned_cols=369 Identities=18% Similarity=0.221 Sum_probs=241.7
Q ss_pred CCCcEEEEEcc---chhHHHH----HhhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHH
Q psy14582 790 ADEFKIIYVAP---MRSLVQE----MVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVA 862 (1689)
Q Consensus 790 ~~~~kvVylaP---~r~L~~q----~v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva 862 (1689)
....++=|++- +|+...+ .+++||+||+| +|.-..+.++- +++.......+.++|..|||+. ++.++
T Consensus 443 ~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAH----ERslNtDilfG-llk~~larRrdlKliVtSATm~-a~kf~ 516 (1042)
T KOG0924|consen 443 SEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAH----ERSLNTDILFG-LLKKVLARRRDLKLIVTSATMD-AQKFS 516 (1042)
T ss_pred CCceeEEEeccchHHHHHhhhhhhhheeEEEechhh----hcccchHHHHH-HHHHHHHhhccceEEEeecccc-HHHHH
Confidence 45566777765 3444333 38999999999 44433333332 2222333356899999999985 89999
Q ss_pred HHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhh
Q psy14582 863 TLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMC 942 (1689)
Q Consensus 863 ~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~ 942 (1689)
.|++..| .|+... |..|++..+...+...+... +..+.+ .|......+-+|||.+.+..++.++..+....
T Consensus 517 nfFgn~p---~f~IpG--RTyPV~~~~~k~p~eDYVea--avkq~v--~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l 587 (1042)
T KOG0924|consen 517 NFFGNCP---QFTIPG--RTYPVEIMYTKTPVEDYVEA--AVKQAV--QIHLSGPPGDILIFMTGQEDIECTCDIIKEKL 587 (1042)
T ss_pred HHhCCCc---eeeecC--CccceEEEeccCchHHHHHH--HHhhhe--EeeccCCCCCEEEecCCCcchhHHHHHHHHHH
Confidence 9999543 455544 55666666655444433221 111111 11122335789999999999998888887643
Q ss_pred hhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCC
Q psy14582 943 LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 943 ~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp 1022 (1689)
.....- ..-...|--.++.|+..-+..+++.-..|..+++|||++++..+.||
T Consensus 588 ~ql~~~---------------------------~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~ 640 (1042)
T KOG0924|consen 588 EQLDSA---------------------------PTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIP 640 (1042)
T ss_pred HhhhcC---------------------------CCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeec
Confidence 321110 00011233448999999999999999999999999999999999999
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCC----cceecCHHHHHHHhcccCCCCCCC
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG----RWVELGALDVLQMLGRAGRPQYDT 1098 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~----~~~~~s~~d~lQm~GRAGR~g~d~ 1098 (1689)
++.+| |-|.- ....+|++..| ..+++|-..--||.|||||.|
T Consensus 641 gI~yV-----------------ID~Gy--------------~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~--- 686 (1042)
T KOG0924|consen 641 GIRYV-----------------IDTGY--------------CKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG--- 686 (1042)
T ss_pred ceEEE-----------------EecCc--------------eeeeecccccccceeEEEechhccchhhccccCCCC---
Confidence 99999 54432 12367888887 356899999999999999987
Q ss_pred ccEEEEEecCCcHHHHHHHhhCcCCcccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccc
Q psy14582 1099 KGEGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDAL 1178 (1689)
Q Consensus 1099 ~G~~iil~~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~ 1178 (1689)
.|.|+-+.+.. .|-..++..+.| ||....+.|.-=. | ..+..+++
T Consensus 687 pG~cYRlYTe~--ay~~eml~stvP---------------EIqRTNl~nvVLl---L---------------kslgV~dl 731 (1042)
T KOG0924|consen 687 PGTCYRLYTED--AYKNEMLPSTVP---------------EIQRTNLSNVVLL---L---------------KSLGVDDL 731 (1042)
T ss_pred Ccceeeehhhh--HHHhhcccCCCc---------------hhhhcchhhHHHH---H---------------HhcChhhh
Confidence 89999888753 233445555555 2222111111000 0 00111222
Q ss_pred cCChhhhhhhHHHHHHHHHHHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcc
Q psy14582 1179 KEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGE 1258 (1689)
Q Consensus 1179 ~~d~~l~~~~~~lv~~al~~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~E 1258 (1689)
...+++.....+.+.+++..|-..|.|.- .-.+|++|+.|+.|+++|...+++.....-.|. .++|.|+|+-+=
T Consensus 732 l~FdFmD~Pped~~~~sly~Lw~LGAl~~-----~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~-dEilsIvSmLSv 805 (1042)
T KOG0924|consen 732 LKFDFMDPPPEDNLLNSLYQLWTLGALDN-----TGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCS-DEILSIVSMLSV 805 (1042)
T ss_pred hCCCcCCCCHHHHHHHHHHHHHHhhcccc-----CCccchhhHHhhhCCCCchHHHHHHHHhccCcH-HHHHHHHHHhcc
Confidence 22334444555778899999999999974 247899999999999999999999988766665 478888877542
Q ss_pred cccCcCChHHHHHHHHHH
Q psy14582 1259 FRHITVREEEKLELQKLM 1276 (1689)
Q Consensus 1259 f~~i~vR~~E~~~l~~l~ 1276 (1689)
..+.+|..|+.+-..+.
T Consensus 806 -p~VF~rpker~eead~a 822 (1042)
T KOG0924|consen 806 -PAVFYRPKEREEEADAA 822 (1042)
T ss_pred -cceeeccccchhhhhhH
Confidence 45667766666554443
No 99
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.80 E-value=7.2e-18 Score=207.85 Aligned_cols=204 Identities=23% Similarity=0.290 Sum_probs=127.0
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccc-cceEEEEecCC-CCHHHHHHHhhcCCCccEEEecCCCcccceE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQE-DVRLVGLSATL-PNYKDVATLLRIKPETGLFYFDNSFRPVALE 886 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~-~~riV~lSATl-~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~ 886 (1689)
++++|+||-|..+-. .| ..+...+. .+.++.||||. |..-.+..|-..+ ..+..--+.-| .|+.
T Consensus 385 LgLVIiDEQHRFGV~---------QR--~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDld--vS~IdElP~GR-kpI~ 450 (677)
T COG1200 385 LGLVIIDEQHRFGVH---------QR--LALREKGEQNPHVLVMTATPIPRTLALTAFGDLD--VSIIDELPPGR-KPIT 450 (677)
T ss_pred eeEEEEeccccccHH---------HH--HHHHHhCCCCCcEEEEeCCCchHHHHHHHhcccc--chhhccCCCCC-CceE
Confidence 789999999987621 11 22333445 68899999994 4322333332221 11111111111 2454
Q ss_pred EEEEeechhhHHHHHHHhhHHHHHHHHH-HhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHh
Q psy14582 887 QQYIGVTEKKALKRFQVMNDIVYEKVME-HAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTE 965 (1689)
Q Consensus 887 ~~~~~~~~~~~~~~~~~m~~~~~~~i~~-~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~ 965 (1689)
...+.... . ..+|+.+.+ ...++|+.+.|+-..+.+++--.-...
T Consensus 451 T~~i~~~~--~--------~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~------------------------ 496 (677)
T COG1200 451 TVVIPHER--R--------PEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEE------------------------ 496 (677)
T ss_pred EEEecccc--H--------HHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHH------------------------
Confidence 44443222 1 123333433 235789999999877766332100000
Q ss_pred hhhccchhhhccc-CCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEE
Q psy14582 966 ADQVKNGELRDLL-PYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVL 1044 (1689)
Q Consensus 966 ~~~~~~~~L~~~l-~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vL 1044 (1689)
....|+..+ .+.||..||.|+..++..|++.|++|+++|||||.|.+-|+|+|+.++.
T Consensus 497 ----~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvM----------------- 555 (677)
T COG1200 497 ----LYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVM----------------- 555 (677)
T ss_pred ----HHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEE-----------------
Confidence 001122223 3458999999999999999999999999999888888888888877665
Q ss_pred EEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1045 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1045 VaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
|| +|++. +..+.+.|--||.||.+ ..+.|++++....
T Consensus 556 -----------------VI-----e~AER-----FGLaQLHQLRGRVGRG~--~qSyC~Ll~~~~~ 592 (677)
T COG1200 556 -----------------VI-----ENAER-----FGLAQLHQLRGRVGRGD--LQSYCVLLYKPPL 592 (677)
T ss_pred -----------------EE-----echhh-----hhHHHHHHhccccCCCC--cceEEEEEeCCCC
Confidence 23 44432 45889999999999986 7899999988755
No 100
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.75 E-value=7.5e-17 Score=201.21 Aligned_cols=95 Identities=23% Similarity=0.331 Sum_probs=79.0
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.+.+++||+.+...+..++..+...+. +....+..+..+|..
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~--------------------------------------~~~it~~t~~~eR~~ 323 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI--------------------------------------VEAITGETPKEEREA 323 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc--------------------------------------eEEEECCCCHHHHHH
Confidence 356999999999999999887754211 234478899999999
Q ss_pred HHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcc
Q psy14582 997 VEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRW 1076 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~ 1076 (1689)
+.+.|+.|.+++||++.++..|+|+|+++++ | ++.||
T Consensus 324 il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~-----------------i----------------~~~~t---------- 360 (442)
T COG1061 324 ILERFRTGGIKVLVTVKVLDEGVDIPDADVL-----------------I----------------ILRPT---------- 360 (442)
T ss_pred HHHHHHcCCCCEEEEeeeccceecCCCCcEE-----------------E----------------EeCCC----------
Confidence 9999999999999999999999999999988 2 33333
Q ss_pred eecCHHHHHHHhcccCCC
Q psy14582 1077 VELGALDVLQMLGRAGRP 1094 (1689)
Q Consensus 1077 ~~~s~~d~lQm~GRAGR~ 1094 (1689)
-|...|.||+||.=|+
T Consensus 361 --~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 361 --GSRRLFIQRLGRGLRP 376 (442)
T ss_pred --CcHHHHHHHhhhhccC
Confidence 2688999999999996
No 101
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=5.9e-16 Score=198.87 Aligned_cols=127 Identities=12% Similarity=0.174 Sum_probs=84.4
Q ss_pred ceEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccceEEE--EEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEE
Q psy14582 846 VRLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVALEQQ--YIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLL 922 (1689)
Q Consensus 846 ~riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~--~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vL 922 (1689)
.++-|||+|... ..++.+..+.. + ..-+..+|+--... .+..+... .+.++.+.+ ...+..+.|+|
T Consensus 380 ~kLsGMTGTa~te~~Ef~~iY~l~----V-v~IPtnkp~~R~d~~d~v~~t~~~---k~~av~~~i---~~~~~~g~PVL 448 (896)
T PRK13104 380 NKLSGMTGTADTEAYEFQQIYNLE----V-VVIPTNRSMIRKDEADLVYLTQAD---KFQAIIEDV---RECGVRKQPVL 448 (896)
T ss_pred chhccCCCCChhHHHHHHHHhCCC----E-EECCCCCCcceecCCCeEEcCHHH---HHHHHHHHH---HHHHhCCCCEE
Confidence 357899999873 34444444332 2 33455666532211 11112111 222222222 12345688999
Q ss_pred EEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHh
Q psy14582 923 VFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFA 1002 (1689)
Q Consensus 923 VFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~ 1002 (1689)
|||+|...++.++..|...+.... +.||.+.+.+|..|.+.|+
T Consensus 449 Vgt~Sie~sE~ls~~L~~~gi~h~-------------------------------------vLnak~~q~Ea~iia~Ag~ 491 (896)
T PRK13104 449 VGTVSIEASEFLSQLLKKENIKHQ-------------------------------------VLNAKFHEKEAQIIAEAGR 491 (896)
T ss_pred EEeCcHHHHHHHHHHHHHcCCCeE-------------------------------------eecCCCChHHHHHHHhCCC
Confidence 999999999999999987554433 3399999999999999999
Q ss_pred cCCeEEEEEcchhccCCCCC
Q psy14582 1003 DRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 1003 ~g~i~VLVaT~vl~rGIDIp 1022 (1689)
.|. |+||||+++||+||.
T Consensus 492 ~G~--VtIATNmAGRGtDI~ 509 (896)
T PRK13104 492 PGA--VTIATNMAGRGTDIV 509 (896)
T ss_pred CCc--EEEeccCccCCccee
Confidence 994 999999999999995
No 102
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.73 E-value=4.4e-17 Score=207.67 Aligned_cols=382 Identities=21% Similarity=0.247 Sum_probs=232.7
Q ss_pred CCCCCHHHHHHHHHHHhc---CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhc
Q psy14582 479 FKTLNRIQSRLCKSALES---DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGN 555 (1689)
Q Consensus 479 ~~~~tpiQ~~aip~al~~---g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~ 555 (1689)
...+++-|+.++..+..+ -...|+.+.||||||.+|+=.|-..|. .|..+|+++|-.+|..|+...
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-----------~GkqvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-----------QGKQVLVLVPEIALTPQLLAR 264 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-----------cCCEEEEEeccccchHHHHHH
Confidence 457899999999988755 367899999999999999888877776 345899999999999999988
Q ss_pred ccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCccccceeEEEE
Q psy14582 556 FGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIG 635 (1689)
Q Consensus 556 f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~ 635 (1689)
|..++ +.++..+++-+++......|.+.. +
T Consensus 265 f~~rF----------------------------g~~v~vlHS~Ls~~er~~~W~~~~--~-------------------- 294 (730)
T COG1198 265 FKARF----------------------------GAKVAVLHSGLSPGERYRVWRRAR--R-------------------- 294 (730)
T ss_pred HHHHh----------------------------CCChhhhcccCChHHHHHHHHHHh--c--------------------
Confidence 87766 123334444456656666775444 2
Q ss_pred echhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCcccchhhhhhhc
Q psy14582 636 VTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKS 715 (1689)
Q Consensus 636 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~il~~e~~~l~~ 715 (1689)
|...|+|+| -. .
T Consensus 295 -------------------------G~~~vVIGt--------RS---A-------------------------------- 306 (730)
T COG1198 295 -------------------------GEARVVIGT--------RS---A-------------------------------- 306 (730)
T ss_pred -------------------------CCceEEEEe--------ch---h--------------------------------
Confidence 277899999 11 0
Q ss_pred cccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEE
Q psy14582 716 RYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKI 795 (1689)
Q Consensus 716 ~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kv 795 (1689)
.+.|+.
T Consensus 307 ----------lF~Pf~---------------------------------------------------------------- 312 (730)
T COG1198 307 ----------LFLPFK---------------------------------------------------------------- 312 (730)
T ss_pred ----------hcCchh----------------------------------------------------------------
Confidence 001111
Q ss_pred EEEccchhHHHHHhhccccCCceeec--CCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCC-cc
Q psy14582 796 IYVAPMRSLVQEMVGNFGKDEIHLLH--DERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPE-TG 872 (1689)
Q Consensus 796 VylaP~r~L~~q~v~liIiDEiHll~--d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~-~~ 872 (1689)
.+++||+||-|--. .+.++.+. +|.+........++.+|+-|||.+ +-.|..+... ..
T Consensus 313 ------------~LGLIIvDEEHD~sYKq~~~prYh---ARdvA~~Ra~~~~~pvvLgSATPS----LES~~~~~~g~y~ 373 (730)
T COG1198 313 ------------NLGLIIVDEEHDSSYKQEDGPRYH---ARDVAVLRAKKENAPVVLGSATPS----LESYANAESGKYK 373 (730)
T ss_pred ------------hccEEEEeccccccccCCcCCCcC---HHHHHHHHHHHhCCCEEEecCCCC----HHHHHhhhcCceE
Confidence 18899999999543 23333332 233333445567899999999976 3344443222 12
Q ss_pred EEEecCCCc-ccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHhhhhccccch
Q psy14582 873 LFYFDNSFR-PVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHA-GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQ 950 (1689)
Q Consensus 873 ~~~f~~~~R-pvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~-~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~ 950 (1689)
.+.+...+. ..+....++.......... ..+...+++.+.+.. .+.|+|+|+|.|..+-.+...=+.....+.....
T Consensus 374 ~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~ 452 (730)
T COG1198 374 LLRLTNRAGRARLPRVEIIDMRKEPLETG-RSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDS 452 (730)
T ss_pred EEEccccccccCCCcceEEeccccccccC-ccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCc
Confidence 333333332 2233445554433221110 003455666665544 3789999999998765444332222222211111
Q ss_pred hhhcCchhHHHHHH----------hhhhcc--------------chhhhcccC-CceeEeccCCCHHH--HHHHHHHHhc
Q psy14582 951 FLREGSASMEVLRT----------EADQVK--------------NGELRDLLP-YGFAIHHAGMTRVD--RTLVEDLFAD 1003 (1689)
Q Consensus 951 fl~~~~~~~e~l~~----------~~~~~~--------------~~~L~~~l~-~Gi~~hHagl~~~d--R~~ve~~F~~ 1003 (1689)
.+..........+. .|..+. .+.|+.+++ .-|...-++.+... -+..+..|.+
T Consensus 453 ~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ 532 (730)
T COG1198 453 PLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFAN 532 (730)
T ss_pred ceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhC
Confidence 11100000000011 111111 134555554 34555555544433 3567889999
Q ss_pred CCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHH
Q psy14582 1004 RHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALD 1083 (1689)
Q Consensus 1004 g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d 1083 (1689)
|+++|||.|++++.|.|+|+|++| ++++.++ |++.|.. |-.+....-
T Consensus 533 ge~dILiGTQmiaKG~~fp~vtLV---------------gvl~aD~---~L~~~Df---------------RA~Er~fql 579 (730)
T COG1198 533 GEADILIGTQMIAKGHDFPNVTLV---------------GVLDADT---GLGSPDF---------------RASERTFQL 579 (730)
T ss_pred CCCCeeecchhhhcCCCcccceEE---------------EEEechh---hhcCCCc---------------chHHHHHHH
Confidence 999999999999999999999999 4555554 4444433 223455788
Q ss_pred HHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHh
Q psy14582 1084 VLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLL 1118 (1689)
Q Consensus 1084 ~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll 1118 (1689)
+.|-+|||||.+ ..|.++|.|...+......++
T Consensus 580 l~QvaGRAgR~~--~~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 580 LMQVAGRAGRAG--KPGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred HHHHHhhhccCC--CCCeEEEEeCCCCcHHHHHHH
Confidence 999999999986 899999999987754444433
No 103
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.72 E-value=8.1e-16 Score=199.29 Aligned_cols=196 Identities=19% Similarity=0.265 Sum_probs=136.7
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCC-CCHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATL-PNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl-~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
++|+||||-|..+-. .+..+..+..++.++-||||. |..-. ....+... -.+.. .+..+..|++.
T Consensus 717 LGLlIIDEEqRFGVk-----------~KEkLK~Lr~~VDvLTLSATPIPRTL~-Msm~GiRd-lSvI~-TPP~~R~pV~T 782 (1139)
T COG1197 717 LGLLIIDEEQRFGVK-----------HKEKLKELRANVDVLTLSATPIPRTLN-MSLSGIRD-LSVIA-TPPEDRLPVKT 782 (1139)
T ss_pred CCeEEEechhhcCcc-----------HHHHHHHHhccCcEEEeeCCCCcchHH-HHHhcchh-hhhcc-CCCCCCcceEE
Confidence 899999999987632 122234456789999999994 42111 12222221 11211 22223345655
Q ss_pred EEEeechhhHHHHHHHhhHHHHHHHH-HHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhh
Q psy14582 888 QYIGVTEKKALKRFQVMNDIVYEKVM-EHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEA 966 (1689)
Q Consensus 888 ~~~~~~~~~~~~~~~~m~~~~~~~i~-~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~ 966 (1689)
++...+.. .+-+.++ +...++|+...+|........+..|++...+
T Consensus 783 ~V~~~d~~-----------~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPE---------------------- 829 (1139)
T COG1197 783 FVSEYDDL-----------LIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPE---------------------- 829 (1139)
T ss_pred EEecCChH-----------HHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCc----------------------
Confidence 54443321 1222333 3455889988889989999999988874332
Q ss_pred hhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEE
Q psy14582 967 DQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVS 1046 (1689)
Q Consensus 967 ~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVa 1046 (1689)
..|++-||.|+..+-+.++..|.+|..+|||||.+.+.|||||+++.+
T Consensus 830 -------------arI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTi------------------- 877 (1139)
T COG1197 830 -------------ARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTI------------------- 877 (1139)
T ss_pred -------------eEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceE-------------------
Confidence 237788999999999999999999999999999999999999987665
Q ss_pred cccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1047 TATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1047 T~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
||..... ++.+++.|.-||.||.. ..|.|++++.+.+
T Consensus 878 ---------------IIe~AD~----------fGLsQLyQLRGRVGRS~--~~AYAYfl~p~~k 914 (1139)
T COG1197 878 ---------------IIERADK----------FGLAQLYQLRGRVGRSN--KQAYAYFLYPPQK 914 (1139)
T ss_pred ---------------EEecccc----------ccHHHHHHhccccCCcc--ceEEEEEeecCcc
Confidence 4544333 45889999999999986 8999999998654
No 104
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.72 E-value=5.8e-17 Score=186.34 Aligned_cols=206 Identities=15% Similarity=0.115 Sum_probs=165.8
Q ss_pred hHHHHhhhhhhhccCCCchhHHHHHHHHHHhhhhccC-CCcccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhh
Q psy14582 1467 AIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWS-KDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLL 1545 (1689)
Q Consensus 1467 ~~rll~a~vdi~s~~gwL~~~l~~m~l~QmivQa~w~-~~s~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll 1545 (1689)
+--|++|+++|++.+|+++++..++.+-||||||++- .--+++||||.+.|.+++..-+.|+++.+|..+.++.-...|
T Consensus 295 ~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~I~~~~~~~sL~~~~~g~vl 374 (610)
T COG5407 295 VEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRLIEGMKAIGSLIAKRYGNVL 374 (610)
T ss_pred hHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhhhhhhhhHhhHHHHHHhhhh
Confidence 3458999999999999999999999999999999984 468999999999999988888889999999999999988888
Q ss_pred c-CCHHHHHHHHHHHhcCCcEEE---EEEEeccccccCCCeEEEEEEEE---------ec------C-------------
Q psy14582 1546 Q-LSESQLADVARFCNRYPNIEL---SYEVLNKDRISSGSSVNVVVNLD---------RE------D------------- 1593 (1689)
Q Consensus 1546 ~-l~~~q~~~v~~~~~~~P~iei---~~~v~~~~~i~~g~~~~l~v~l~---------R~------~------------- 1593 (1689)
. ++..|+.++.++++.+|++.+ .|-|.++.-|++|+..-+..+.- |. +
T Consensus 375 ~n~~~~~l~e~~~va~gIPr~~~~~a~flv~~d~~it~~s~~~vslk~~~g~~~~pe~~ts~~~~~n~~e~~dfe~~~~~ 454 (610)
T COG5407 375 KNLVVLELMEIQAVADGIPRYFLLQAPFLVFEDLFITEKSKERVSLKGYLGAIPGPEHRTSALNVYNQVEISDFEASVIE 454 (610)
T ss_pred hhHHHHHHHHHHHHhcCCCceEEEecceeecccceecccceeeEEEEEEeccccCCcccccccccccccChHHHhhhccC
Confidence 6 899999999999999999876 67788889999999886665541 10 0
Q ss_pred --------CCCCccccCCCCCCCcccEEEEEEeCCCCeEEE----EEeeccCcceEEEEEeeCC-CCceEEEEEEEEcCC
Q psy14582 1594 --------EVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLS----IKRLTLQQKAKIKLDFVAP-NPGHHSYALYFMSDA 1660 (1689)
Q Consensus 1594 --------~~~~~v~aP~fP~~K~e~Wwvvvgd~~~~~l~~----ikrv~~~~~~~~~l~f~~p-~~G~~~~~l~~~sDs 1660 (1689)
+..+...||+||....-.||+.|.+++.+.++- |+.++ ....+.+++|.+| -.|+..+.+.+++-+
T Consensus 455 ~~ai~~d~~~~pys~Ap~f~t~~~~~w~~~v~~~~Qt~~Iip~~Si~~v~-K~~~d~Ri~~dv~pvd~T~~~ql~~~ap~ 533 (610)
T COG5407 455 TGAIKNDSSDSPYSEAPDFATRNDSEWAVRVAKCEQTVYIIPGGSIATVS-KVTLDRRIQGDVAPVDKTGGKQLIVHAPF 533 (610)
T ss_pred ccccccCCCCCCcccCcccccccCcceEEEeeccccceEEeCCccccccc-hhhhhcccccccCccccccceeeeecCch
Confidence 023358999999999999999999999877762 33332 1223456666543 457778888888888
Q ss_pred CCCCCceEEEEEE
Q psy14582 1661 YLGCDQEYKFSID 1673 (1689)
Q Consensus 1661 Y~G~D~e~~~~l~ 1673 (1689)
|+|.+.-..+.+-
T Consensus 534 ~vg~f~~~~ivm~ 546 (610)
T COG5407 534 MVGAFSVKWIVML 546 (610)
T ss_pred hhccceeeeEEEE
Confidence 8888776555433
No 105
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=1e-15 Score=195.97 Aligned_cols=166 Identities=16% Similarity=0.221 Sum_probs=112.9
Q ss_pred eEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccceEEE--EEeechhhHHHHHHHhhHHHHHHHH-HHhCCCeEE
Q psy14582 847 RLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVALEQQ--YIGVTEKKALKRFQVMNDIVYEKVM-EHAGRNQLL 922 (1689)
Q Consensus 847 riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~--~~~~~~~~~~~~~~~m~~~~~~~i~-~~~~~~~vL 922 (1689)
++.|||.|... ..++.+..+.. + ..-+..+|+--... .+..+... .+.+ +.+.+. .+..+.|+|
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~l~----v-v~IPtnkp~~r~d~~d~i~~t~~~---K~~a----l~~~i~~~~~~g~pvL 444 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYNME----V-ITIPTNRPVIRKDSPDLLYPTLDS---KFNA----VVKEIKERHAKGQPVL 444 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC----E-EEcCCCCCeeeeeCCCeEEcCHHH---HHHH----HHHHHHHHHhCCCCEE
Confidence 68899999873 23344333322 2 33455666432111 11112211 1222 222232 234578999
Q ss_pred EEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHh
Q psy14582 923 VFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFA 1002 (1689)
Q Consensus 923 VFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~ 1002 (1689)
|||+|+..++.++..|...+... ...||++...++..+.+.++
T Consensus 445 I~t~si~~se~ls~~L~~~gi~~-------------------------------------~~Lna~~~~~Ea~ii~~ag~ 487 (796)
T PRK12906 445 VGTVAIESSERLSHLLDEAGIPH-------------------------------------AVLNAKNHAKEAEIIMNAGQ 487 (796)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCe-------------------------------------eEecCCcHHHHHHHHHhcCC
Confidence 99999999999999998754332 34499999888888888888
Q ss_pred cCCeEEEEEcchhccCCCCC---Ccc-----eeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCC
Q psy14582 1003 DRHIQVLVSTATLAWGVNLP---AHT-----VVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 1074 (1689)
Q Consensus 1003 ~g~i~VLVaT~vl~rGIDIp---~V~-----~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~ 1074 (1689)
.|. |+|||++++||+||+ +|. +| | |..+|
T Consensus 488 ~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhV-----------------I-------~te~p----------------- 524 (796)
T PRK12906 488 RGA--VTIATNMAGRGTDIKLGPGVKELGGLAV-----------------I-------GTERH----------------- 524 (796)
T ss_pred Cce--EEEEeccccCCCCCCCCcchhhhCCcEE-----------------E-------eeecC-----------------
Confidence 887 999999999999994 777 76 3 33333
Q ss_pred cceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1075 RWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1075 ~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
-|...+.|+.|||||.| .+|.+..+++-.+
T Consensus 525 ----es~ri~~Ql~GRtGRqG--~~G~s~~~~sleD 554 (796)
T PRK12906 525 ----ESRRIDNQLRGRSGRQG--DPGSSRFYLSLED 554 (796)
T ss_pred ----CcHHHHHHHhhhhccCC--CCcceEEEEeccc
Confidence 34778999999999999 8999999988654
No 106
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.70 E-value=4.5e-15 Score=167.54 Aligned_cols=208 Identities=17% Similarity=0.215 Sum_probs=130.1
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCC--cccceE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF--RPVALE 886 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~--RpvpL~ 886 (1689)
++++||||++..--...+.+...+... ....--+|.||||.++ .+.+-+...... .......| +|.|+-
T Consensus 203 FD~liIDEVDAFP~~~d~~L~~Av~~a------rk~~g~~IylTATp~k--~l~r~~~~g~~~-~~klp~RfH~~pLpvP 273 (441)
T COG4098 203 FDLLIIDEVDAFPFSDDQSLQYAVKKA------RKKEGATIYLTATPTK--KLERKILKGNLR-ILKLPARFHGKPLPVP 273 (441)
T ss_pred ccEEEEeccccccccCCHHHHHHHHHh------hcccCceEEEecCChH--HHHHHhhhCCee-EeecchhhcCCCCCCC
Confidence 899999999987655666666665443 2345568999999883 333333222111 12222222 344443
Q ss_pred EEEEeechhhHHHHHHHhhHHHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHh
Q psy14582 887 QQYIGVTEKKALKRFQVMNDIVYEKVMEHA-GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTE 965 (1689)
Q Consensus 887 ~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~-~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~ 965 (1689)
..+...+-.+...+ +.+-..++..+.++. .+.|++||+++....+.+|..|......
T Consensus 274 kf~w~~~~~k~l~r-~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~--------------------- 331 (441)
T COG4098 274 KFVWIGNWNKKLQR-NKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPK--------------------- 331 (441)
T ss_pred ceEEeccHHHHhhh-ccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCc---------------------
Confidence 32222222222221 112223445555443 3679999999999999999988642211
Q ss_pred hhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEE
Q psy14582 966 ADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLV 1045 (1689)
Q Consensus 966 ~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLV 1045 (1689)
..+++-|+. ..+|....+.|++|++.+||+|.+++||+.+|+|+++ |
T Consensus 332 --------------~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~-----------------V 378 (441)
T COG4098 332 --------------ETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVF-----------------V 378 (441)
T ss_pred --------------cceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEE-----------------E
Confidence 123444553 4678888999999999999999999999999999887 3
Q ss_pred EcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEe
Q psy14582 1046 STATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLIT 1106 (1689)
Q Consensus 1046 aT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~ 1106 (1689)
- | . .| .-++-..++|++||+||.-....|..+.|-
T Consensus 379 l------------------g-----a-eh--~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 379 L------------------G-----A-EH--RVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred e------------------c-----C-Cc--ccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 1 1 1 11 125678999999999998644567666553
No 107
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=7.9e-15 Score=187.97 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=58.2
Q ss_pred CCCCC---CHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhh
Q psy14582 478 DFKTL---NRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 554 (1689)
Q Consensus 478 g~~~~---tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~ 554 (1689)
||..| +|+|.+++|.++ .++++|++|+||+|||+||++|++..+... ..+++|+||++||.|..+
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~-l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-----------~~v~IVTpTrELA~Qdae 153 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIA-MHKGFITEMQTGEGKTLTAVMPLYLNALTG-----------KPVHLVTVNDYLAQRDCE 153 (970)
T ss_pred cccCCCCCChHHHHHhhhhh-cCCCeEEEeCCCCChHHHHHHHHHHHHhhc-----------CCeEEEeCCHHHHHHHHH
Confidence 78777 999999999888 789999999999999999999999877531 138899999999999885
Q ss_pred cc
Q psy14582 555 NF 556 (1689)
Q Consensus 555 ~f 556 (1689)
.+
T Consensus 154 ~m 155 (970)
T PRK12899 154 WV 155 (970)
T ss_pred HH
Confidence 44
No 108
>KOG0926|consensus
Probab=99.69 E-value=1.7e-15 Score=184.53 Aligned_cols=351 Identities=18% Similarity=0.212 Sum_probs=198.6
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhcc------ccceEEEEecCCCCHHHHHH---HhhcCCCccEEEecCC
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQ------EDVRLVGLSATLPNYKDVAT---LLRIKPETGLFYFDNS 879 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~------~~~riV~lSATl~n~~dva~---~L~~~~~~~~~~f~~~ 879 (1689)
++.||+||+|.-.- ...++-..++|..+.-.... .+.++|.|||||- ..|+.+ .+...+ .+... .
T Consensus 373 YSvIIlDEAHERSv-nTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLR-VsDFtenk~LFpi~p--PlikV--d 446 (1172)
T KOG0926|consen 373 YSVIILDEAHERSV-NTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLR-VSDFTENKRLFPIPP--PLIKV--D 446 (1172)
T ss_pred ceeEEechhhhccc-hHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEE-ecccccCceecCCCC--ceeee--e
Confidence 88999999993221 11233333455443322222 3789999999986 223321 111111 12232 3
Q ss_pred CcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccc-------cchh-
Q psy14582 880 FRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDT-------LGQF- 951 (1689)
Q Consensus 880 ~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~-------l~~f- 951 (1689)
-|..|+..||..-+...+.. .+..+.| .|.+..+.+-+||||....++..+++.|+......-. ...|
T Consensus 447 ARQfPVsIHF~krT~~DYi~--eAfrKtc--~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~ 522 (1172)
T KOG0926|consen 447 ARQFPVSIHFNKRTPDDYIA--EAFRKTC--KIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFK 522 (1172)
T ss_pred cccCceEEEeccCCCchHHH--HHHHHHH--HHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhcc
Confidence 46667777877655544332 1112222 3445567788999999999999999999976321100 0000
Q ss_pred -hhcC-----------c-------hhHHHHHHhhhh------------ccc----------hhhhc-------------c
Q psy14582 952 -LREG-----------S-------ASMEVLRTEADQ------------VKN----------GELRD-------------L 977 (1689)
Q Consensus 952 -l~~~-----------~-------~~~e~l~~~~~~------------~~~----------~~L~~-------------~ 977 (1689)
++.. . .+.+......-. ..+ ....+ .
T Consensus 523 e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~ 602 (1172)
T KOG0926|consen 523 ELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSP 602 (1172)
T ss_pred ccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCC
Confidence 0000 0 000000000000 000 00000 0
Q ss_pred cCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCC
Q psy14582 978 LPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1057 (1689)
Q Consensus 978 l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLP 1057 (1689)
-+.-|--.++-|+..++..|++.-..|..-++|||++++..+.||+|.+| |-+.-
T Consensus 603 ~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYV-----------------VD~Gr-------- 657 (1172)
T KOG0926|consen 603 GPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYV-----------------VDCGR-------- 657 (1172)
T ss_pred CceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEE-----------------Eeccc--------
Confidence 11224456888999999999999999999999999999999999999999 43221
Q ss_pred CceEEEeceeeecCCCCc--ce--ecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCcCCcccccccccc
Q psy14582 1058 AHTVIIKGTQIYNPEKGR--WV--ELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLPVESQMISKLP 1133 (1689)
Q Consensus 1058 a~~VII~gt~~yd~~~~~--~~--~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~pieS~l~~~l~ 1133 (1689)
..+..||..+|- |. -+|-.+--||+|||||.| .|.||-+.+..- |.. . +.
T Consensus 658 ------~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSAV---f~~----~----------Fe 711 (1172)
T KOG0926|consen 658 ------VKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSAV---FSN----D----------FE 711 (1172)
T ss_pred ------hhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhHH---hhc----c----------hh
Confidence 113567777762 11 357777789999999997 899998766421 110 1 11
Q ss_pred cchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCChhhhhhhHHHHHHHHHHHHHcCCceeccCCCc
Q psy14582 1134 DMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGH 1213 (1689)
Q Consensus 1134 d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~~lv~~al~~L~~~~~i~~~~~~~~ 1213 (1689)
++-..||...-+ ++.+--+ ++=+ + ..+.+.|+=...-...++.|...|...|.++-+ |
T Consensus 712 ~fS~PEIlk~Pv---e~lvLqM----------KsMn---I--~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~---g- 769 (1172)
T KOG0926|consen 712 EFSLPEILKKPV---ESLVLQM----------KSMN---I--DKVVNFPFPTPPDRSALEKAERRLKALGALDSN---G- 769 (1172)
T ss_pred hhccHHHhhCcH---HHHHHHH----------HhcC---c--cceecCCCCCCccHHHHHHHHHHHHHhcccccc---C-
Confidence 111223322111 1111000 0000 0 001111221222234678999999999999853 3
Q ss_pred eeeccccccceecccchhhHHHHHHhhCCC
Q psy14582 1214 MQVTELGRIASHYYCTHETMATYNQLLKPT 1243 (1689)
Q Consensus 1214 ~~~t~lG~ias~yyi~~~t~~~~~~~l~~~ 1243 (1689)
.+|.||+.+|+|+++|.-.+++..+....
T Consensus 770 -~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~ 798 (1172)
T KOG0926|consen 770 -GLTKLGKAMSLFPLSPRFSKMLATSDQHN 798 (1172)
T ss_pred -CcccccchhcccccChhHHHHHHHHHhhc
Confidence 78999999999999999888877655444
No 109
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.69 E-value=1.1e-15 Score=201.39 Aligned_cols=204 Identities=19% Similarity=0.200 Sum_probs=123.0
Q ss_pred hhccccCCceeecCC-chhHHHHHHHHHHHHHHhccccceEEEEecCCCCH--HHHHHHhhcCCCccEEEecCCCcccce
Q psy14582 809 VGNFGKDEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNY--KDVATLLRIKPETGLFYFDNSFRPVAL 885 (1689)
Q Consensus 809 v~liIiDEiHll~d~-rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~--~dva~~L~~~~~~~~~~f~~~~RpvpL 885 (1689)
.+++|+||+|++.++ --..+..++... ...+.++|.+|||+|.. +.+-..++... ....... .++.
T Consensus 339 ~S~vIlDE~h~~~~~~~~~~l~~~i~~l------~~~g~~ill~SATlP~~~~~~l~~~~~~~~---~~~~~~~--~~~~ 407 (733)
T COG1203 339 TSLVILDEVHLYADETMLAALLALLEAL------AEAGVPVLLMSATLPPFLKEKLKKALGKGR---EVVENAK--FCPK 407 (733)
T ss_pred hhchhhccHHhhcccchHHHHHHHHHHH------HhCCCCEEEEecCCCHHHHHHHHHHHhccc---ceecccc--cccc
Confidence 789999999999886 333333333322 23478999999999942 22333333221 1111111 1110
Q ss_pred EEEEEeechhhHHHHHHHhhHHHHHHH-HHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHH
Q psy14582 886 EQQYIGVTEKKALKRFQVMNDIVYEKV-MEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRT 964 (1689)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~m~~~~~~~i-~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~ 964 (1689)
.-.. .+...................+ .....+++++|-|||.+.|..+...|+..+.
T Consensus 408 ~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--------------------- 465 (733)
T COG1203 408 EDEP-GLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--------------------- 465 (733)
T ss_pred cccc-ccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC---------------------
Confidence 0000 0000000000000000011111 1233468999999999999999999986432
Q ss_pred hhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHH----hcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhccc
Q psy14582 965 EADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLF----ADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRH 1040 (1689)
Q Consensus 965 ~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F----~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~ 1040 (1689)
.+...|+.++..+|...++.+ +.+...|+|||++.+.|+||. .+++
T Consensus 466 ----------------~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~m------------- 515 (733)
T COG1203 466 ----------------KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVL------------- 515 (733)
T ss_pred ----------------CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCee-------------
Confidence 244569999999999888754 457889999999988888887 3433
Q ss_pred ceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCC
Q psy14582 1041 IQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS 1109 (1689)
Q Consensus 1041 i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~ 1109 (1689)
++ ..-++.+++||+||++|-|.+..|.+++.....
T Consensus 516 ----IT------------------------------e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 516 ----IT------------------------------ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred ----ee------------------------------cCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 21 113578899999999999977778888777654
No 110
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=99.68 E-value=1.6e-16 Score=190.87 Aligned_cols=127 Identities=38% Similarity=0.587 Sum_probs=121.9
Q ss_pred hhhHHHHhhhhhhhccCCCchhHHHHHHHHHHhhhhccCCCcccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHh
Q psy14582 1465 SEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRL 1544 (1689)
Q Consensus 1465 ~~~~rll~a~vdi~s~~gwL~~~l~~m~l~QmivQa~w~~~s~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~l 1544 (1689)
.+++||++||+||+..+||+++++++|+|+|||+||+|+.++||+|||||+.+.++++.++++.++.++.+++++++..+
T Consensus 110 ~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~l 189 (312)
T smart00611 110 QNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPEEILKRLEKKKVLSLEDLLELEDEERGEL 189 (312)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCHHHHHHHHhCCCCCHHHHHhcCHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhcCCcEEEEEEEeccccccCCCeEEEEEEEEe
Q psy14582 1545 LQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVVVNLDR 1591 (1689)
Q Consensus 1545 l~l~~~q~~~v~~~~~~~P~iei~~~v~~~~~i~~g~~~~l~v~l~R 1591 (1689)
+++++.+.+++.++|++||+++|++++.+.+.+..+..++++++++|
T Consensus 190 l~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~ 236 (312)
T smart00611 190 LGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTW 236 (312)
T ss_pred HcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEE
Confidence 99999999999999999999999999988777888999999999988
No 111
>KOG0920|consensus
Probab=99.67 E-value=1.5e-15 Score=195.27 Aligned_cols=316 Identities=18% Similarity=0.190 Sum_probs=196.2
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQ 888 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~ 888 (1689)
+..+|+||+|.-.-.....+-.+ +.+....++.++|+||||+. ++.+..+++..+ +..... |..|+..+
T Consensus 288 vthiivDEVHER~i~~DflLi~l-----k~lL~~~p~LkvILMSAT~d-ae~fs~YF~~~p---vi~i~g--rtfpV~~~ 356 (924)
T KOG0920|consen 288 VTHIIVDEVHERSINTDFLLILL-----KDLLPRNPDLKVILMSATLD-AELFSDYFGGCP---VITIPG--RTFPVKEY 356 (924)
T ss_pred CceeeeeeEEEccCCcccHHHHH-----HHHhhhCCCceEEEeeeecc-hHHHHHHhCCCc---eEeecC--CCcchHHH
Confidence 88999999996544333332222 12223468999999999987 788899888543 222222 22222222
Q ss_pred EE----------eechhhH------------HH-----HHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHh
Q psy14582 889 YI----------GVTEKKA------------LK-----RFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDM 941 (1689)
Q Consensus 889 ~~----------~~~~~~~------------~~-----~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~ 941 (1689)
|. ..+.... .. .-..+...+...+.+....+.+|||.++-.+...+...|...
T Consensus 357 fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~ 436 (924)
T KOG0920|consen 357 FLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVN 436 (924)
T ss_pred HHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhc
Confidence 10 0000000 00 000111222223333334678999999999999998888653
Q ss_pred hhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCC
Q psy14582 942 CLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNL 1021 (1689)
Q Consensus 942 ~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDI 1021 (1689)
....+. ...-+-..|+.|+..++..|......|..+|+++|++++.+|.|
T Consensus 437 ~~f~~~------------------------------~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITI 486 (924)
T KOG0920|consen 437 LPFADS------------------------------LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITI 486 (924)
T ss_pred cccccc------------------------------cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccc
Confidence 322111 11123445999999999999999999999999999999999999
Q ss_pred CCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCc----ceecCHHHHHHHhcccCCCCCC
Q psy14582 1022 PAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGR----WVELGALDVLQMLGRAGRPQYD 1097 (1689)
Q Consensus 1022 p~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~----~~~~s~~d~lQm~GRAGR~g~d 1097 (1689)
++|-+| |.|.- .| -..||+..+. -.-.|-....||.|||||..
T Consensus 487 dDVvyV-----------------IDsG~-------------~K-e~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~-- 533 (924)
T KOG0920|consen 487 DDVVYV-----------------IDSGL-------------VK-EKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR-- 533 (924)
T ss_pred cCeEEE-----------------EecCe-------------ee-eeeecccCCcchhheeeccccchHHhcccccCcc--
Confidence 999999 44332 11 2568887663 12357788999999999985
Q ss_pred CccEEEEEecCCcHHHHHHHhh-CcCCcccccccccccchhhhhhhccc-cChHHHHHHHhhhhhhhhhccCCcccCCCc
Q psy14582 1098 TKGEGVLITNHSELQYYLSLLN-HQLPVESQMISKLPDMLNAEIVLGTV-QNLKDAVTWLGYTYLYIRMLRAPNLYGISH 1175 (1689)
Q Consensus 1098 ~~G~~iil~~~~~~~~y~~ll~-~~~pieS~l~~~l~d~lnaeI~~g~i-~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~ 1175 (1689)
.|.||-+.+.. .|.+++. .+.| .-+. .-..|+++..- -+..+..++|+ +++..|
T Consensus 534 -~G~cy~L~~~~---~~~~~~~~~q~P--EilR-----~pL~~l~L~iK~l~~~~~~~fLs------kaldpP------- 589 (924)
T KOG0920|consen 534 -PGICYHLYTRS---RYEKLMLAYQLP--EILR-----TPLEELCLHIKVLEQGSIKAFLS------KALDPP------- 589 (924)
T ss_pred -CCeeEEeechh---hhhhcccccCCh--HHHh-----ChHHHhhheeeeccCCCHHHHHH------HhcCCC-------
Confidence 89999888753 4555444 3443 0000 01112222111 11111112222 332222
Q ss_pred ccccCChhhhhhhHHHHHHHHHHHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHh
Q psy14582 1176 DALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQL 1239 (1689)
Q Consensus 1176 ~~~~~d~~l~~~~~~lv~~al~~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~ 1239 (1689)
-.+-|..|+..|.+-|.+..++ .+|+||+.+|.+++++.-.++..-.
T Consensus 590 ------------~~~~v~~a~~~L~~igaL~~~e-----~LT~LG~~la~lPvd~~igK~ll~g 636 (924)
T KOG0920|consen 590 ------------PADAVDLAIERLKQIGALDESE-----ELTPLGLHLASLPVDVRIGKLLLFG 636 (924)
T ss_pred ------------ChHHHHHHHHHHHHhccccCcc-----cchHHHHHHHhCCCccccchhheeh
Confidence 2256899999999999998654 8999999999999999988765543
No 112
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=1.7e-14 Score=185.74 Aligned_cols=126 Identities=17% Similarity=0.211 Sum_probs=82.5
Q ss_pred eEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccceEEE--EEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEE
Q psy14582 847 RLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVALEQQ--YIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLV 923 (1689)
Q Consensus 847 riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~--~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLV 923 (1689)
++.|||.|... ..++.+..+.. + ..-+..+|+-.... .+..+... ++.++...+. ..+..+.|+||
T Consensus 367 kl~GmTGTa~te~~E~~~iY~l~----v-v~IPtnkp~~r~d~~d~i~~t~~~---K~~aI~~~I~---~~~~~grpVLI 435 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYNLD----V-VVIPTNRPMIRIDHPDLIYKTEKE---KFDAVVEDIK---ERHKKGQPVLV 435 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhCCC----E-EEcCCCCCeeeeeCCCeEEECHHH---HHHHHHHHHH---HHHhcCCCEEE
Confidence 67899999873 33444444332 2 23355666432211 11112222 2223222221 12345789999
Q ss_pred EeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhc
Q psy14582 924 FVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFAD 1003 (1689)
Q Consensus 924 Fv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~ 1003 (1689)
||+|+..++.++..|...+.... ..||. +.+|+..+..|+.
T Consensus 436 ft~Si~~se~Ls~~L~~~gi~~~-------------------------------------vLnak--q~eREa~Iia~Ag 476 (830)
T PRK12904 436 GTVSIEKSELLSKLLKKAGIPHN-------------------------------------VLNAK--NHEREAEIIAQAG 476 (830)
T ss_pred EeCcHHHHHHHHHHHHHCCCceE-------------------------------------eccCc--hHHHHHHHHHhcC
Confidence 99999999999999987544332 23774 7889999999999
Q ss_pred CCeEEEEEcchhccCCCCC
Q psy14582 1004 RHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 1004 g~i~VLVaT~vl~rGIDIp 1022 (1689)
|...|+||||+++||+||+
T Consensus 477 ~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 477 RPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred CCceEEEecccccCCcCcc
Confidence 9999999999999999996
No 113
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.66 E-value=1.2e-15 Score=171.65 Aligned_cols=83 Identities=24% Similarity=0.308 Sum_probs=70.4
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.+++.+++.+. |++.|+++|.++++.++ .|+|++++||||+|||++|++|++..+.... ...+.+++|++|
T Consensus 5 ~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~-~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~------~~~~~~viii~p 77 (203)
T cd00268 5 GLSPELLRGIYALGFEKPTPIQARAIPPLL-SGRDVIGQAQTGSGKTAAFLIPILEKLDPSP------KKDGPQALILAP 77 (203)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHHHHhhc------ccCCceEEEEcC
Confidence 45666776665 89999999999999988 6999999999999999999999999887642 124579999999
Q ss_pred chhhhHhhhhcc
Q psy14582 545 MRSLVQEMVGNF 556 (1689)
Q Consensus 545 treLa~Qi~~~f 556 (1689)
|++|+.|+...+
T Consensus 78 ~~~L~~q~~~~~ 89 (203)
T cd00268 78 TRELALQIAEVA 89 (203)
T ss_pred CHHHHHHHHHHH
Confidence 999999987544
No 114
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.63 E-value=4.6e-14 Score=190.67 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHHh---c-CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhc
Q psy14582 480 KTLNRIQSRLCKSALE---S-DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGN 555 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~---~-g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~ 555 (1689)
..++++|.+|+..+.+ . .++.|+++|||||||.+++..+ ..+.+.. ...++||++|+++|+.|..+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~~--------~~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKAK--------RFRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhcC--------ccCeEEEEecHHHHHHHHHHH
Confidence 4589999999976652 2 4689999999999999965544 3343321 224899999999999999977
Q ss_pred ccc
Q psy14582 556 FGK 558 (1689)
Q Consensus 556 f~k 558 (1689)
|..
T Consensus 483 F~~ 485 (1123)
T PRK11448 483 FKD 485 (1123)
T ss_pred HHh
Confidence 744
No 115
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.62 E-value=3.1e-13 Score=182.04 Aligned_cols=218 Identities=17% Similarity=0.207 Sum_probs=122.0
Q ss_pred cceEEEEecCCC---CHHHHHHHhhcCCCccEEEe-cCCCc-ccceEEEEEe--echh---hHHHHHHHhhHHHHHHHHH
Q psy14582 845 DVRLVGLSATLP---NYKDVATLLRIKPETGLFYF-DNSFR-PVALEQQYIG--VTEK---KALKRFQVMNDIVYEKVME 914 (1689)
Q Consensus 845 ~~riV~lSATl~---n~~dva~~L~~~~~~~~~~f-~~~~R-pvpL~~~~~~--~~~~---~~~~~~~~m~~~~~~~i~~ 914 (1689)
...+|++||||. +.+-+.+.+|..... ...+ .+.|. .-.. ..++. ++.. ........+...+.. +..
T Consensus 595 ~~~~il~SATL~~~~~~~~~~~~lGl~~~~-~~~~~~spf~~~~~~-~l~v~~d~~~~~~~~~~~~~~~ia~~i~~-l~~ 671 (850)
T TIGR01407 595 FKSLIFTSATLKFSHSFESFPQLLGLTDVH-FNTIEPTPLNYAENQ-RVLIPTDAPAIQNKSLEEYAQEIASYIIE-ITA 671 (850)
T ss_pred CCeEEEEecccccCCChHHHHHhcCCCccc-cceecCCCCCHHHcC-EEEecCCCCCCCCCChHHHHHHHHHHHHH-HHH
Confidence 346899999998 577788888875322 1122 22222 1111 11111 1111 111111222333322 222
Q ss_pred HhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHH
Q psy14582 915 HAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDR 994 (1689)
Q Consensus 915 ~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR 994 (1689)
. .++++|||++|.+....++..|...... .++.++..+.. ..|
T Consensus 672 ~-~~g~~LVlftS~~~l~~v~~~L~~~~~~-----------------------------------~~~~~l~q~~~-~~r 714 (850)
T TIGR01407 672 I-TSPKILVLFTSYEMLHMVYDMLNELPEF-----------------------------------EGYEVLAQGIN-GSR 714 (850)
T ss_pred h-cCCCEEEEeCCHHHHHHHHHHHhhhccc-----------------------------------cCceEEecCCC-ccH
Confidence 2 3578999999999999999888642111 01112223333 478
Q ss_pred HHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCce-EEEecee-eecCC
Q psy14582 995 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHT-VIIKGTQ-IYNPE 1072 (1689)
Q Consensus 995 ~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~-VII~gt~-~yd~~ 1072 (1689)
..+.+.|++|...||+||+.+.+|+|+|+..++ -+ |. .|+.+|... -+++... .+...
T Consensus 715 ~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~--------------~v-iI-----~~LPf~~p~dp~~~a~~~~~~~~ 774 (850)
T TIGR01407 715 AKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLV--------------CL-VI-----PRLPFANPKHPLTKKYWQKLEQE 774 (850)
T ss_pred HHHHHHHHhCCCeEEEEcceeecccccCCCceE--------------EE-EE-----eCCCCCCCCCHHHHHHHHHHHHh
Confidence 889999999999999999999999999998776 11 21 455554321 1111111 11100
Q ss_pred -CCccee----cCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCcCC
Q psy14582 1073 -KGRWVE----LGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLP 1123 (1689)
Q Consensus 1073 -~~~~~~----~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 1123 (1689)
...|.+ .....+.|-+||.=|... ..|..+++-..-....|.+.+-+.+|
T Consensus 775 g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~-D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 775 GKNPFYDYVLPMAIIRLRQALGRLIRREN-DRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred cCCchHHhhHHHHHHHHHHhhccccccCC-ceEEEEEEccccccchHHHHHHHhCC
Confidence 112222 245779999999999874 46766666444334567665555555
No 116
>KOG0925|consensus
Probab=99.62 E-value=5.1e-14 Score=164.32 Aligned_cols=331 Identities=18% Similarity=0.197 Sum_probs=201.0
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQ 888 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~ 888 (1689)
.++||+||+| +|.-..+.+.--+.. +....++.++|.+|||+. +..+..|++..| +..... . .|.+..
T Consensus 160 y~viiLDeah----ERtlATDiLmGllk~-v~~~rpdLk~vvmSatl~-a~Kfq~yf~n~P---ll~vpg-~--~PvEi~ 227 (699)
T KOG0925|consen 160 YGVIILDEAH----ERTLATDILMGLLKE-VVRNRPDLKLVVMSATLD-AEKFQRYFGNAP---LLAVPG-T--HPVEIF 227 (699)
T ss_pred ccEEEechhh----hhhHHHHHHHHHHHH-HHhhCCCceEEEeecccc-hHHHHHHhCCCC---eeecCC-C--CceEEE
Confidence 8999999999 555555544433333 333347999999999987 567888887654 444433 2 344444
Q ss_pred EEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhh
Q psy14582 889 YIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQ 968 (1689)
Q Consensus 889 ~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~ 968 (1689)
|-.-.++.+ +.+..+.+++. ......+-+|||.....+.+..++.+......-. .
T Consensus 228 Yt~e~erDy---lEaairtV~qi-h~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~-----------------~---- 282 (699)
T KOG0925|consen 228 YTPEPERDY---LEAAIRTVLQI-HMCEEPGDILVFLTGEEEIEDACRKISREVDNLG-----------------P---- 282 (699)
T ss_pred ecCCCChhH---HHHHHHHHHHH-HhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhc-----------------c----
Confidence 443333332 33333333332 2223367899999999999998888874321100 0
Q ss_pred ccchhhhcccCCceeEeccCCCHHHHHHHHHHHh---cC--CeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceE
Q psy14582 969 VKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFA---DR--HIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQV 1043 (1689)
Q Consensus 969 ~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~---~g--~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~v 1043 (1689)
+..+..+--.| +..+..+++-.. +| ..+|+|+|++++..+.|++|.+|
T Consensus 283 -------~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~V---------------- 335 (699)
T KOG0925|consen 283 -------QVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFV---------------- 335 (699)
T ss_pred -------ccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEE----------------
Confidence 00111111122 222222222111 12 46899999999999999999999
Q ss_pred EEEcccccccCCCCCceEEEeceeeecCCCCc----ceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhh
Q psy14582 1044 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGR----WVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLN 1119 (1689)
Q Consensus 1044 LVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~----~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 1119 (1689)
|- -|+ .-..+|+|+.+. ..++|-.+..||.|||||. .+|+|+-+.+. .+|.+-+.
T Consensus 336 -ID-----pGf---------~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGkcfrLYte---~~~~~em~ 394 (699)
T KOG0925|consen 336 -ID-----PGF---------SKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTE---EAFEKEMQ 394 (699)
T ss_pred -ec-----Cch---------hhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCceEEeecH---HhhhhcCC
Confidence 32 121 113678887653 2378999999999999997 58999988774 23443222
Q ss_pred -CcCC--cccccccccccchhhhhhhccccChHHHHHHHhhhhhh-hhhccCCcccCCCcccccCChhhhhhhHHHHHHH
Q psy14582 1120 -HQLP--VESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLY-IRMLRAPNLYGISHDALKEDPLLECHRADLIHTA 1195 (1689)
Q Consensus 1120 -~~~p--ieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y-~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~~lv~~a 1195 (1689)
.+.| .+|+|. .+-+. .| +..+++-...++...--+.+..|
T Consensus 395 ~~typeilrsNL~---------------------------s~VL~LKk---------lgI~dlvhfdfmDpPAPEtLMrA 438 (699)
T KOG0925|consen 395 PQTYPEILRSNLS---------------------------STVLQLKK---------LGIDDLVHFDFMDPPAPETLMRA 438 (699)
T ss_pred CCCcHHHHHHhhH---------------------------HHHHHHHh---------cCcccccCCcCCCCCChHHHHHH
Confidence 2222 233322 22111 11 11122222233444445678889
Q ss_pred HHHHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCChH
Q psy14582 1196 ALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREE 1267 (1689)
Q Consensus 1196 l~~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~~ 1267 (1689)
++.|.-.+++.-| --+|++|.+||.|+++|..++++..+...+|+. ++|.|-++-+- .+..+|..
T Consensus 439 LE~LnYLaaLdDd-----GnLT~lG~imSEFPLdPqLAkmLi~S~efnCsn-EiLsisAMLsv-PncFvRp~ 503 (699)
T KOG0925|consen 439 LEVLNYLAALDDD-----GNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSN-EILSISAMLSV-PNCFVRPT 503 (699)
T ss_pred HHHhhhhhhhCCC-----cccchhhhhhhcCCCChHHHHHHhhcCCCCchH-HHHHHHhcccC-CccccCCC
Confidence 9999888887643 357999999999999999999999998888874 67776655432 33445544
No 117
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=99.61 E-value=2.6e-15 Score=180.65 Aligned_cols=125 Identities=30% Similarity=0.539 Sum_probs=104.8
Q ss_pred hhhHHHHhhhhhhhccCCCchhHHHHHHHHHHhhhhccCCCcccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHh
Q psy14582 1465 SEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRL 1544 (1689)
Q Consensus 1465 ~~~~rll~a~vdi~s~~gwL~~~l~~m~l~QmivQa~w~~~s~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~l 1544 (1689)
.+++||++||+|+++.+||++++.++|+|+|||+||+|+.++||+|||||+++.++++.++++.++.+|++++++++..+
T Consensus 107 ~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l~~~~i~~l~~l~~~~~~e~~~l 186 (314)
T PF02889_consen 107 DNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLPHIGEESLKKLEKRGIKTLQDLRDLSPEELEEL 186 (314)
T ss_dssp HHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGSTT--HHHHHHHHHTT--SHHHHHHS-HHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCCCCCHHHHHHHhccCCCcHHHHhhCCHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhcCCcEEEEEEEecc-ccccCCCeEEEEEEEEe
Q psy14582 1545 LQLSESQLADVARFCNRYPNIELSYEVLNK-DRISSGSSVNVVVNLDR 1591 (1689)
Q Consensus 1545 l~l~~~q~~~v~~~~~~~P~iei~~~v~~~-~~i~~g~~~~l~v~l~R 1591 (1689)
++..+.+.+++.++++++|.++|++++... +.+. ..++++|+++|
T Consensus 187 l~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~--~~~~v~v~i~~ 232 (314)
T PF02889_consen 187 LNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIV--PILTVQVSITR 232 (314)
T ss_dssp H-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEEC--SEEEEEEEEEE
T ss_pred HhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccC--CcEEEEEEEEc
Confidence 998899999999999999999998887653 2222 66888999988
No 118
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=1.4e-13 Score=176.58 Aligned_cols=126 Identities=13% Similarity=0.156 Sum_probs=83.2
Q ss_pred eEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccceEEE--EEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEE
Q psy14582 847 RLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVALEQQ--YIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLV 923 (1689)
Q Consensus 847 riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~--~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLV 923 (1689)
++.|||.|... ..++.+..+.. +..-+..+|+--... .+..+.. .++.+..+.+ ...+..+.|+||
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~l~-----Vv~IPTnkp~~R~d~~d~iy~t~~---~K~~Aii~ei---~~~~~~GrpVLV 454 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYGLD-----TVVVPTNRPMVRKDMADLVYLTAD---EKYQAIIKDI---KDCRERGQPVLV 454 (908)
T ss_pred HhhcccCCChHHHHHHHHHhCCC-----EEECCCCCCccceeCCCcEEeCHH---HHHHHHHHHH---HHHHHcCCCEEE
Confidence 57899999873 33344333322 233456666432211 1111211 1222222222 112345789999
Q ss_pred EeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhc
Q psy14582 924 FVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFAD 1003 (1689)
Q Consensus 924 Fv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~ 1003 (1689)
||.|...++.++..|...+... .++||.++..+|..|.+.|+.
T Consensus 455 ~t~sv~~se~ls~~L~~~gi~~-------------------------------------~vLnak~~~~Ea~ii~~Ag~~ 497 (908)
T PRK13107 455 GTVSIEQSELLARLMVKEKIPH-------------------------------------EVLNAKFHEREAEIVAQAGRT 497 (908)
T ss_pred EeCcHHHHHHHHHHHHHCCCCe-------------------------------------EeccCcccHHHHHHHHhCCCC
Confidence 9999999999999888754332 234999999999999999999
Q ss_pred CCeEEEEEcchhccCCCCC
Q psy14582 1004 RHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 1004 g~i~VLVaT~vl~rGIDIp 1022 (1689)
|. |+|||++++||+||.
T Consensus 498 G~--VtIATnmAGRGTDIk 514 (908)
T PRK13107 498 GA--VTIATNMAGRGTDIV 514 (908)
T ss_pred Cc--EEEecCCcCCCccee
Confidence 98 999999999999995
No 119
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.60 E-value=1.4e-13 Score=182.17 Aligned_cols=108 Identities=22% Similarity=0.236 Sum_probs=87.9
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHH
Q psy14582 916 AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRT 995 (1689)
Q Consensus 916 ~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~ 995 (1689)
..+.++||||+++..+..++..|... ....+...||+|+..+|.
T Consensus 491 ~~~~KvLVF~~~~~t~~~L~~~L~~~------------------------------------~Gi~~~~ihG~~s~~eR~ 534 (956)
T PRK04914 491 HRSEKVLVICAKAATALQLEQALRER------------------------------------EGIRAAVFHEGMSIIERD 534 (956)
T ss_pred cCCCeEEEEeCcHHHHHHHHHHHhhc------------------------------------cCeeEEEEECCCCHHHHH
Confidence 34679999999999999999888531 012234569999999999
Q ss_pred HHHHHHhcC--CeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCC
Q psy14582 996 LVEDLFADR--HIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEK 1073 (1689)
Q Consensus 996 ~ve~~F~~g--~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~ 1073 (1689)
.+.+.|+++ ..+|||||+++++|+|++.+++| ..+|+|-+
T Consensus 535 ~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~V------------------------InfDlP~n-------------- 576 (956)
T PRK04914 535 RAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHL------------------------VLFDLPFN-------------- 576 (956)
T ss_pred HHHHHHhcCCCCccEEEechhhccCCCcccccEE------------------------EEecCCCC--------------
Confidence 999999984 69999999999999999999998 45566644
Q ss_pred CcceecCHHHHHHHhcccCCCCCCCccEEEEEe
Q psy14582 1074 GRWVELGALDVLQMLGRAGRPQYDTKGEGVLIT 1106 (1689)
Q Consensus 1074 ~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~ 1106 (1689)
+..|.||+||+||.| ..|.+.++.
T Consensus 577 -------P~~~eQRIGR~~RiG--Q~~~V~i~~ 600 (956)
T PRK04914 577 -------PDLLEQRIGRLDRIG--QKHDIQIHV 600 (956)
T ss_pred -------HHHHHHHhcccccCC--CCceEEEEE
Confidence 899999999999999 556655544
No 120
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.59 E-value=1.6e-15 Score=164.94 Aligned_cols=66 Identities=26% Similarity=0.485 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 483 NRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 483 tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
||+|.++++.++ +|+|++++||||||||.++++|+++.+... ...+++|++|+++|+.|++..+.+
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~---------~~~~~lii~P~~~l~~q~~~~~~~ 66 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEG---------KDARVLIIVPTRALAEQQFERLRK 66 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTT---------SSSEEEEEESSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccC---------CCceEEEEeecccccccccccccc
Confidence 799999999988 899999999999999999999999988753 223899999999999999865533
No 121
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.58 E-value=6.9e-13 Score=171.53 Aligned_cols=122 Identities=16% Similarity=0.254 Sum_probs=96.6
Q ss_pred HHHHHH-hCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccC
Q psy14582 910 EKVMEH-AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAG 988 (1689)
Q Consensus 910 ~~i~~~-~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHag 988 (1689)
..+... ..+.++||||+|++.++.++..|.+.+. .+++.|++
T Consensus 433 ~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi-------------------------------------~~~~lh~~ 475 (655)
T TIGR00631 433 SEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGI-------------------------------------KVRYLHSE 475 (655)
T ss_pred HHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhcc-------------------------------------ceeeeeCC
Confidence 334333 3467999999999999999998876432 24556999
Q ss_pred CCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceee
Q psy14582 989 MTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQI 1068 (1689)
Q Consensus 989 l~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~ 1068 (1689)
++..+|..+++.|+.|.+.|||||+++++|+|+|++++| |-|.. ..
T Consensus 476 ~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lV-----------------vi~Da-----------------di 521 (655)
T TIGR00631 476 IDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLV-----------------AILDA-----------------DK 521 (655)
T ss_pred CCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEE-----------------EEeCc-----------------cc
Confidence 999999999999999999999999999999999999998 43332 11
Q ss_pred ecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcH
Q psy14582 1069 YNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL 1111 (1689)
Q Consensus 1069 yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~ 1111 (1689)
|. .+.+..+|+||+|||||. ..|.+++++.....
T Consensus 522 fG------~p~~~~~~iqriGRagR~---~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 522 EG------FLRSERSLIQTIGRAARN---VNGKVIMYADKITD 555 (655)
T ss_pred cc------CCCCHHHHHHHhcCCCCC---CCCEEEEEEcCCCH
Confidence 11 123578999999999997 47999999886543
No 122
>KOG4150|consensus
Probab=99.49 E-value=3.5e-12 Score=150.55 Aligned_cols=226 Identities=15% Similarity=0.157 Sum_probs=144.5
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHh--ccccceEEEEecCCCCHHHH-HHHhhcCCCccEEEecCCCcccce
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEA--TQEDVRLVGLSATLPNYKDV-ATLLRIKPETGLFYFDNSFRPVAL 885 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~--~~~~~riV~lSATl~n~~dv-a~~L~~~~~~~~~~f~~~~RpvpL 885 (1689)
..+.+.||+|+.....|......+.|+.+.+.. ...+.+++-.|||+...... .+..+.+. ..+...+. .|..-
T Consensus 413 ~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E-~~Li~~DG--SPs~~ 489 (1034)
T KOG4150|consen 413 ELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSE-LELVTIDG--SPSSE 489 (1034)
T ss_pred HHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcc-eEEEEecC--CCCcc
Confidence 557788999998887777777777776665543 24578899999999854433 44444432 22333333 34333
Q ss_pred EEEEEeec---hhhHHHH---HHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhH
Q psy14582 886 EQQYIGVT---EKKALKR---FQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASM 959 (1689)
Q Consensus 886 ~~~~~~~~---~~~~~~~---~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~ 959 (1689)
++.+..-+ ..+..++ .......+.+.+ ..+-++|.||++|+-|+.+....++...+...
T Consensus 490 K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i---~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~------------ 554 (1034)
T KOG4150|consen 490 KLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMV---QHGLRCIAFCPSRKLCELVLCLTREILAETAP------------ 554 (1034)
T ss_pred ceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHH---HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhH------------
Confidence 33332211 1111111 111222222222 23568999999999999888777765443321
Q ss_pred HHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcc
Q psy14582 960 EVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADR 1039 (1689)
Q Consensus 960 e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g 1039 (1689)
.|.+ .|.-+.||.+.+||+.+|...--|++.-+|+|++++.||||++++.|
T Consensus 555 -------------~LV~----~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAV------------ 605 (1034)
T KOG4150|consen 555 -------------HLVE----AITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAV------------ 605 (1034)
T ss_pred -------------HHHH----HHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeE------------
Confidence 0110 12234899999999999999999999999999999999999999988
Q ss_pred cceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecC-CcHHHHHH
Q psy14582 1040 HIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNH-SELQYYLS 1116 (1689)
Q Consensus 1040 ~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~-~~~~~y~~ 1116 (1689)
+. .| .++|...+.|.+|||||.. +..-++.+... +-.++|.+
T Consensus 606 -----l~-----~G-----------------------FP~S~aNl~QQ~GRAGRRN--k~SLavyva~~~PVDQ~Y~~ 648 (1034)
T KOG4150|consen 606 -----LH-----LG-----------------------FPGSIANLWQQAGRAGRRN--KPSLAVYVAFLGPVDQYYMS 648 (1034)
T ss_pred -----EE-----cc-----------------------CchhHHHHHHHhccccccC--CCceEEEEEeccchhhHhhc
Confidence 32 12 2578999999999999987 45555554443 33356653
No 123
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.46 E-value=5e-12 Score=164.88 Aligned_cols=113 Identities=16% Similarity=0.250 Sum_probs=92.9
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.+.+++|||+|++.++.++..|...+. .+++.|++++..+|..
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~~h~~~~~~~R~~ 487 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGI-------------------------------------KVRYLHSDIDTLERVE 487 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcce-------------------------------------eEEEEECCCCHHHHHH
Confidence 467899999999999999998876322 3456699999999999
Q ss_pred HHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcc
Q psy14582 997 VEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRW 1076 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~ 1076 (1689)
++..|+.|.+.|+|||+++++|+|+|++++| |-|.. ..|..
T Consensus 488 ~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lV-----------------ii~d~-----------------eifG~----- 528 (652)
T PRK05298 488 IIRDLRLGEFDVLVGINLLREGLDIPEVSLV-----------------AILDA-----------------DKEGF----- 528 (652)
T ss_pred HHHHHHcCCceEEEEeCHHhCCccccCCcEE-----------------EEeCC-----------------ccccc-----
Confidence 9999999999999999999999999999998 54332 11111
Q ss_pred eecCHHHHHHHhcccCCCCCCCccEEEEEecCC
Q psy14582 1077 VELGALDVLQMLGRAGRPQYDTKGEGVLITNHS 1109 (1689)
Q Consensus 1077 ~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~ 1109 (1689)
+.+..+|+||+|||||. ..|.++++++..
T Consensus 529 -~~~~~~yiqr~GR~gR~---~~G~~i~~~~~~ 557 (652)
T PRK05298 529 -LRSERSLIQTIGRAARN---VNGKVILYADKI 557 (652)
T ss_pred -CCCHHHHHHHhccccCC---CCCEEEEEecCC
Confidence 13578999999999995 579999999854
No 124
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.42 E-value=2.1e-11 Score=145.19 Aligned_cols=170 Identities=20% Similarity=0.296 Sum_probs=117.5
Q ss_pred cceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHH-HhCCCeEEE
Q psy14582 845 DVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVME-HAGRNQLLV 923 (1689)
Q Consensus 845 ~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~-~~~~~~vLV 923 (1689)
..|+|..|||..+++ +.. ... .....-.||..|---.+.+.... ... +-++..+.. ...+.++||
T Consensus 386 ~~q~i~VSATPg~~E-~e~----s~~---~vveQiIRPTGLlDP~ievRp~~--~Qv----dDL~~EI~~r~~~~eRvLV 451 (663)
T COG0556 386 IPQTIYVSATPGDYE-LEQ----SGG---NVVEQIIRPTGLLDPEIEVRPTK--GQV----DDLLSEIRKRVAKNERVLV 451 (663)
T ss_pred cCCEEEEECCCChHH-HHh----ccC---ceeEEeecCCCCCCCceeeecCC--CcH----HHHHHHHHHHHhcCCeEEE
Confidence 468999999988653 111 110 12233446654321111111111 111 122333333 344689999
Q ss_pred EeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhc
Q psy14582 924 FVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFAD 1003 (1689)
Q Consensus 924 Fv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~ 1003 (1689)
-+-|++.++.+..+|.+.+. .+.|.|++...-+|..+++..+.
T Consensus 452 TtLTKkmAEdLT~Yl~e~gi-------------------------------------kv~YlHSdidTlER~eIirdLR~ 494 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGI-------------------------------------KVRYLHSDIDTLERVEIIRDLRL 494 (663)
T ss_pred EeehHHHHHHHHHHHHhcCc-------------------------------------eEEeeeccchHHHHHHHHHHHhc
Confidence 99999999999999887543 35667999999999999999999
Q ss_pred CCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHH
Q psy14582 1004 RHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALD 1083 (1689)
Q Consensus 1004 g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d 1083 (1689)
|.+.|||+-+++..|+|+|.|.+| -+.|+.+-++ ..|-.+
T Consensus 495 G~~DvLVGINLLREGLDiPEVsLV---------------------------------------AIlDADKeGF-LRse~S 534 (663)
T COG0556 495 GEFDVLVGINLLREGLDLPEVSLV---------------------------------------AILDADKEGF-LRSERS 534 (663)
T ss_pred CCccEEEeehhhhccCCCcceeEE---------------------------------------EEeecCcccc-ccccch
Confidence 999999999999999999999998 2344444333 246678
Q ss_pred HHHHhcccCCCCCCCccEEEEEecC
Q psy14582 1084 VLQMLGRAGRPQYDTKGEGVLITNH 1108 (1689)
Q Consensus 1084 ~lQm~GRAGR~g~d~~G~~iil~~~ 1108 (1689)
++|-+|||.|. ..|++|+++..
T Consensus 535 LIQtIGRAARN---~~GkvIlYAD~ 556 (663)
T COG0556 535 LIQTIGRAARN---VNGKVILYADK 556 (663)
T ss_pred HHHHHHHHhhc---cCCeEEEEchh
Confidence 99999999995 58999988754
No 125
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.37 E-value=8e-11 Score=154.24 Aligned_cols=68 Identities=24% Similarity=0.319 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHhc---------CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhh
Q psy14582 482 LNRIQSRLCKSALES---------DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 552 (1689)
Q Consensus 482 ~tpiQ~~aip~al~~---------g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi 552 (1689)
+++.|..|+..+++. ++..|++.|||||||++++..+...+... ...++|+|+|+++|..|.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~---------~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL---------KNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc---------CCCeEEEEECcHHHHHHH
Confidence 577888888776432 35789999999999999888775544221 346999999999999999
Q ss_pred hhcccc
Q psy14582 553 VGNFGK 558 (1689)
Q Consensus 553 ~~~f~k 558 (1689)
.+.|.+
T Consensus 310 ~~~f~~ 315 (667)
T TIGR00348 310 MKEFQS 315 (667)
T ss_pred HHHHHh
Confidence 977744
No 126
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=1.7e-10 Score=148.98 Aligned_cols=171 Identities=19% Similarity=0.258 Sum_probs=111.2
Q ss_pred eEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccceEEE--EEeechhhHHHHHHHhhHHHHHHHHH-HhCCCeEE
Q psy14582 847 RLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVALEQQ--YIGVTEKKALKRFQVMNDIVYEKVME-HAGRNQLL 922 (1689)
Q Consensus 847 riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~--~~~~~~~~~~~~~~~m~~~~~~~i~~-~~~~~~vL 922 (1689)
++-|||.|... ..++.+..+.. +..-+..||+--.-. .+..+... .+.+ +...+.. +..+.|+|
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~L~-----Vv~IPTnrP~~R~D~~d~vy~t~~e---K~~A----li~~I~~~~~~grpVL 602 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYKLD-----VVVIPTNKPIVRKDMDDLVYKTRRE---KYNA----IVLKVEELQKKGQPVL 602 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhCCc-----EEECCCCCCcceecCCCeEecCHHH---HHHH----HHHHHHHHhhCCCCEE
Confidence 57789999763 33343333321 233466677532211 11112211 1222 2222322 34578999
Q ss_pred EEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHh
Q psy14582 923 VFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFA 1002 (1689)
Q Consensus 923 VFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~ 1002 (1689)
|||+|+..++.++..|...+.... ..|+ .+.+|+..+..|+
T Consensus 603 Ift~Sve~sE~Ls~~L~~~gI~h~-------------------------------------vLna--kq~~REa~Iia~A 643 (1025)
T PRK12900 603 VGTASVEVSETLSRMLRAKRIAHN-------------------------------------VLNA--KQHDREAEIVAEA 643 (1025)
T ss_pred EEeCcHHHHHHHHHHHHHcCCCce-------------------------------------eecC--CHHHhHHHHHHhc
Confidence 999999999999999987544332 2275 5789999999999
Q ss_pred cCCeEEEEEcchhccCCCCC---CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceec
Q psy14582 1003 DRHIQVLVSTATLAWGVNLP---AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVEL 1079 (1689)
Q Consensus 1003 ~g~i~VLVaT~vl~rGIDIp---~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~ 1079 (1689)
.+...|+|||++++||+||+ +|..+ -|+ +|| ||. .+-
T Consensus 644 G~~g~VtIATNMAGRGtDIkl~~~V~~v------------------------GGL------~VI-gte---------rhe 683 (1025)
T PRK12900 644 GQKGAVTIATNMAGRGTDIKLGEGVREL------------------------GGL------FIL-GSE---------RHE 683 (1025)
T ss_pred CCCCeEEEeccCcCCCCCcCCccchhhh------------------------CCc------eee-CCC---------CCc
Confidence 99999999999999999999 44433 111 111 111 123
Q ss_pred CHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1080 GALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1080 s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
|...|.|+.|||||.| .+|.++.+++..+
T Consensus 684 s~Rid~Ql~GRtGRqG--dpGsS~ffvSleD 712 (1025)
T PRK12900 684 SRRIDRQLRGRAGRQG--DPGESVFYVSLED 712 (1025)
T ss_pred hHHHHHHHhhhhhcCC--CCcceEEEechhH
Confidence 5678999999999999 8999999988754
No 127
>KOG0953|consensus
Probab=99.30 E-value=2.1e-11 Score=145.43 Aligned_cols=257 Identities=19% Similarity=0.257 Sum_probs=164.2
Q ss_pred cccccccc--cceeEe-ecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH--------------
Q psy14582 746 RWIGAETI--LPVSFR-LPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM-------------- 808 (1689)
Q Consensus 746 ~wl~~e~~--~pv~~~-aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~-------------- 808 (1689)
.|+...-. +-|+++ -||.||||+.++-- +.. ..+.+|.-|.|-||.++
T Consensus 181 ~WyP~AR~~~RkIi~H~GPTNSGKTy~ALqr----l~~-----------aksGvycGPLrLLA~EV~~r~na~gipCdL~ 245 (700)
T KOG0953|consen 181 NWYPEARKIRRKIIMHVGPTNSGKTYRALQR----LKS-----------AKSGVYCGPLRLLAHEVYDRLNALGIPCDLL 245 (700)
T ss_pred ccCchhHhhhheEEEEeCCCCCchhHHHHHH----Hhh-----------hccceecchHHHHHHHHHHHhhhcCCCcccc
Confidence 45554332 336776 59999999988732 221 34678999999998882
Q ss_pred ------------------------------hhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCC
Q psy14582 809 ------------------------------VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN 857 (1689)
Q Consensus 809 ------------------------------v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n 857 (1689)
+++.||||++++.| .||..|...+-.+ ....+.+.|=-|.++=
T Consensus 246 TGeE~~~~~~~~~~a~hvScTVEM~sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl------~AdEiHLCGepsvldl 319 (700)
T KOG0953|consen 246 TGEERRFVLDNGNPAQHVSCTVEMVSVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGL------AADEIHLCGEPSVLDL 319 (700)
T ss_pred ccceeeecCCCCCcccceEEEEEEeecCCceEEEEehhHHhhcCcccchHHHHHHHhh------hhhhhhccCCchHHHH
Confidence 78899999999999 8998876654432 1234555554444443
Q ss_pred HHHHHHHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHH
Q psy14582 858 YKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARA 937 (1689)
Q Consensus 858 ~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~ 937 (1689)
.+++++--+.+ +....-.|-.||... +.....+.. ...+-++| |-||++...+.+.
T Consensus 320 V~~i~k~TGd~-----vev~~YeRl~pL~v~-----------------~~~~~sl~n-lk~GDCvV-~FSkk~I~~~k~k 375 (700)
T KOG0953|consen 320 VRKILKMTGDD-----VEVREYERLSPLVVE-----------------ETALGSLSN-LKPGDCVV-AFSKKDIFTVKKK 375 (700)
T ss_pred HHHHHhhcCCe-----eEEEeecccCcceeh-----------------hhhhhhhcc-CCCCCeEE-EeehhhHHHHHHH
Confidence 34444433322 111111222233110 011122222 22344443 5578888777777
Q ss_pred HHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhc--CCeEEEEEcchh
Q psy14582 938 IRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFAD--RHIQVLVSTATL 1015 (1689)
Q Consensus 938 L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~--g~i~VLVaT~vl 1015 (1689)
|...+. ..+++.+|+|++..|..--.+|.+ +..+||
T Consensus 376 IE~~g~------------------------------------~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvl------ 413 (700)
T KOG0953|consen 376 IEKAGN------------------------------------HKCAVIYGSLPPETRLAQAALFNDPSNECDVL------ 413 (700)
T ss_pred HHHhcC------------------------------------cceEEEecCCCCchhHHHHHHhCCCCCccceE------
Confidence 665322 235677999999999999999987 778888
Q ss_pred ccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCC
Q psy14582 1016 AWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1016 ~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g 1095 (1689)
|||+...+|+||.-++||+..-..|++++ ..+++.....|.+|||||.|
T Consensus 414 -----------------------------VAsDAIGMGLNL~IrRiiF~sl~Kysg~e--~~~it~sqikQIAGRAGRf~ 462 (700)
T KOG0953|consen 414 -----------------------------VASDAIGMGLNLNIRRIIFYSLIKYSGRE--TEDITVSQIKQIAGRAGRFG 462 (700)
T ss_pred -----------------------------EeecccccccccceeEEEEeecccCCccc--ceeccHHHHHHHhhcccccc
Confidence 66666677777778888888888898653 56899999999999999987
Q ss_pred CCCccEEEEEe-cCCcHHHHHHHhhCc
Q psy14582 1096 YDTKGEGVLIT-NHSELQYYLSLLNHQ 1121 (1689)
Q Consensus 1096 ~d~~G~~iil~-~~~~~~~y~~ll~~~ 1121 (1689)
. ....+++-| ...++....+.|..+
T Consensus 463 s-~~~~G~vTtl~~eDL~~L~~~l~~p 488 (700)
T KOG0953|consen 463 S-KYPQGEVTTLHSEDLKLLKRILKRP 488 (700)
T ss_pred c-CCcCceEEEeeHhhHHHHHHHHhCC
Confidence 3 223333333 335566777776643
No 128
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.29 E-value=1.4e-09 Score=145.06 Aligned_cols=65 Identities=25% Similarity=0.300 Sum_probs=53.8
Q ss_pred ccCCCCCCHHHHH---HHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhh
Q psy14582 476 FEDFKTLNRIQSR---LCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 552 (1689)
Q Consensus 476 f~g~~~~tpiQ~~---aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi 552 (1689)
+.|| ++++-|.+ ++-.++..+..++++||||+|||++|++|++... .+.++|+.+|||+|++|+
T Consensus 241 ~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 241 LLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred cCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------CCCcEEEEeCcHHHHHHH
Confidence 3466 48999998 5555676789999999999999999999988643 134899999999999999
Q ss_pred h
Q psy14582 553 V 553 (1689)
Q Consensus 553 ~ 553 (1689)
+
T Consensus 308 ~ 308 (820)
T PRK07246 308 M 308 (820)
T ss_pred H
Confidence 5
No 129
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.28 E-value=7.7e-10 Score=150.03 Aligned_cols=220 Identities=15% Similarity=0.223 Sum_probs=121.0
Q ss_pred ceEEEEecCCC---CHHHHHHHhhcCCCc-cEEEecCCCcccceEEEEEe--echh---hHHHHHHHhhHHHHHHHHHHh
Q psy14582 846 VRLVGLSATLP---NYKDVATLLRIKPET-GLFYFDNSFRPVALEQQYIG--VTEK---KALKRFQVMNDIVYEKVMEHA 916 (1689)
Q Consensus 846 ~riV~lSATl~---n~~dva~~L~~~~~~-~~~~f~~~~RpvpL~~~~~~--~~~~---~~~~~~~~m~~~~~~~i~~~~ 916 (1689)
..+|++||||. +..-+.+.+|.+... ....+.+.|....-...++. ++.. ........+.+.+.. +.. .
T Consensus 673 ~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~-l~~-~ 750 (928)
T PRK08074 673 KSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAK-IAK-A 750 (928)
T ss_pred CcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHH-HHH-h
Confidence 45789999998 456667778875321 13344444422110011111 1111 111112233333333 222 2
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.++++|||.+|.+....++..|....... ++-+.--|++...|..
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~-----------------------------------~~~ll~Qg~~~~~r~~ 795 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELE-----------------------------------GYVLLAQGVSSGSRAR 795 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhccccc-----------------------------------CceEEecCCCCCCHHH
Confidence 35789999999999999988886522110 1111122444455788
Q ss_pred HHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCce-EEEeceeee-cCC-C
Q psy14582 997 VEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHT-VIIKGTQIY-NPE-K 1073 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~-VII~gt~~y-d~~-~ 1073 (1689)
+.+.|+.+.-.||++|..+.+|+|+|+-.+. .+|. .|+.+|... -+++....| ... .
T Consensus 796 l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~---------------~viI-----~kLPF~~p~dp~~~a~~~~~~~~g~ 855 (928)
T PRK08074 796 LTKQFQQFDKAILLGTSSFWEGIDIPGDELS---------------CLVI-----VRLPFAPPDQPVMEAKSEWAKEQGE 855 (928)
T ss_pred HHHHHHhcCCeEEEecCcccCccccCCCceE---------------EEEE-----ecCCCCCCCCHHHHHHHHHHHHhCC
Confidence 9999999988999999999999999975322 1132 455554221 122211111 111 1
Q ss_pred Ccceec----CHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCcCC
Q psy14582 1074 GRWVEL----GALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLP 1123 (1689)
Q Consensus 1074 ~~~~~~----s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 1123 (1689)
..|.++ .+..+.|-+||.=|... ..|..+|+-..-....|.+.+-..+|
T Consensus 856 ~~F~~~~lP~A~~~lkQg~GRlIRs~~-D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 856 NPFQELSLPQAVLRFKQGFGRLIRTET-DRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred CchhhhhhHHHHHHHHhhhhhhcccCC-ceEEEEEecCccccchHHHHHHHhCC
Confidence 123333 36678999999999874 46766655544344556665555555
No 130
>KOG0331|consensus
Probab=99.22 E-value=3.2e-10 Score=139.29 Aligned_cols=285 Identities=20% Similarity=0.238 Sum_probs=163.7
Q ss_pred eecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccccCCc----
Q psy14582 742 IVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEI---- 817 (1689)
Q Consensus 742 i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEi---- 817 (1689)
|++..|-.+-+...++..+-||+|||++|++|++.++... ........++++|+++||||||.|+-.. ++|+
T Consensus 117 IQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~--~~~~~~~~~P~vLVL~PTRELA~QV~~~--~~~~~~~~ 192 (519)
T KOG0331|consen 117 IQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNE--QGKLSRGDGPIVLVLAPTRELAVQVQAE--AREFGKSL 192 (519)
T ss_pred hhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhc--cccccCCCCCeEEEEcCcHHHHHHHHHH--HHHHcCCC
Confidence 6788898888888999999999999999999999988653 1111234578999999999999995221 1121
Q ss_pred ----eee-cC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEEEEe
Q psy14582 818 ----HLL-HD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIG 891 (1689)
Q Consensus 818 ----Hll-~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~~~ 891 (1689)
+++ ++ ..++.++.+ ...+.++ -||..-..|+.+.-..+.. ...|..
T Consensus 193 ~~~~~cvyGG~~~~~Q~~~l-----------~~gvdiv--iaTPGRl~d~le~g~~~l~---------------~v~ylV 244 (519)
T KOG0331|consen 193 RLRSTCVYGGAPKGPQLRDL-----------ERGVDVV--IATPGRLIDLLEEGSLNLS---------------RVTYLV 244 (519)
T ss_pred CccEEEEeCCCCccHHHHHH-----------hcCCcEE--EeCChHHHHHHHcCCcccc---------------ceeEEE
Confidence 222 33 455554432 2234443 4776644444332222111 123333
Q ss_pred echhhHHHHHHHh-hHHHHHHHHHHh-C-CCeEEEEeCC-hHHHHHHHHHHHHhhhhccccch-hhhcCchhHHHHHHhh
Q psy14582 892 VTEKKALKRFQVM-NDIVYEKVMEHA-G-RNQLLVFVHS-RKETGKTARAIRDMCLEKDTLGQ-FLREGSASMEVLRTEA 966 (1689)
Q Consensus 892 ~~~~~~~~~~~~m-~~~~~~~i~~~~-~-~~~vLVFv~s-rk~~~~~a~~L~~~~~~~~~l~~-fl~~~~~~~e~l~~~~ 966 (1689)
+++... +..| .+.-...++... . ..|+|.|..| .+.++.+|..+............ -+.... .+...+
T Consensus 245 LDEADr---MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~----~i~qiv 317 (519)
T KOG0331|consen 245 LDEADR---MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANH----NIRQIV 317 (519)
T ss_pred eccHHh---hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhc----chhhhh
Confidence 443222 1111 112223444444 2 3479999877 46788888877652111111100 000000 000000
Q ss_pred hhccchhhhcccCCceeEeccCCCHHH-HHHHHHHHh-cCCeEEEEEcc------hhccCCCC---------CCcceeeh
Q psy14582 967 DQVKNGELRDLLPYGFAIHHAGMTRVD-RTLVEDLFA-DRHIQVLVSTA------TLAWGVNL---------PAHTVVDR 1029 (1689)
Q Consensus 967 ~~~~~~~L~~~l~~Gi~~hHagl~~~d-R~~ve~~F~-~g~i~VLVaT~------vl~rGIDI---------p~V~~V~R 1029 (1689)
+ ..+ .+.... ...++..+. ...-+|||.++ -+++.+.. ++...-+|
T Consensus 318 e----------------~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR 380 (519)
T KOG0331|consen 318 E----------------VCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSER 380 (519)
T ss_pred h----------------hcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHH
Confidence 0 001 111111 112333332 11224444432 23333333 23333399
Q ss_pred hhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCC
Q psy14582 1030 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1030 ~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g 1095 (1689)
+.+++.|++|.+.+||||..+|+|+|+|...+||. ||+ |.+.--++.|.||.|
T Consensus 381 ~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn----ydf---------P~~vEdYVHRiGRTG 433 (519)
T KOG0331|consen 381 DWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN----YDF---------PNNVEDYVHRIGRTG 433 (519)
T ss_pred HHHHHhcccCCcceEEEcccccccCCCccccEEEe----CCC---------CCCHHHHHhhcCccc
Confidence 99999999999999999999999999999988876 665 999999999999988
No 131
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.20 E-value=4.4e-10 Score=145.39 Aligned_cols=70 Identities=13% Similarity=0.000 Sum_probs=51.9
Q ss_pred cCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHh
Q psy14582 505 PTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIE 584 (1689)
Q Consensus 505 PTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~ 584 (1689)
.+|||||.+|+-.+-..+.. |..+|+++|..+|+.|+...|..++
T Consensus 168 ~~GSGKTevyl~~i~~~l~~-----------Gk~vLvLvPEi~lt~q~~~rl~~~f------------------------ 212 (665)
T PRK14873 168 LPGEDWARRLAAAAAATLRA-----------GRGALVVVPDQRDVDRLEAALRALL------------------------ 212 (665)
T ss_pred CCCCcHHHHHHHHHHHHHHc-----------CCeEEEEecchhhHHHHHHHHHHHc------------------------
Confidence 35999999998888776652 3479999999999999998776544
Q ss_pred hcccCceEEEEeecCCCHHHHHHHHhhC
Q psy14582 585 ATQEDVRLVGLSATLPNYKDVATLLRIK 612 (1689)
Q Consensus 585 ~~~~~~q~v~~SAT~~~~~~v~~~l~~~ 612 (1689)
...+++.+.+-+++......|+...
T Consensus 213 ---~~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 213 ---GAGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred ---CCCcEEEECCCCCHHHHHHHHHHHh
Confidence 1234666666677767777775543
No 132
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.17 E-value=1.7e-10 Score=119.66 Aligned_cols=105 Identities=30% Similarity=0.427 Sum_probs=84.8
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.++++||||+++..++.++..|.. ...++.++|++++..+|..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~-------------------------------------~~~~~~~~~~~~~~~~~~~ 69 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK-------------------------------------PGIKVAALHGDGSQEEREE 69 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh-------------------------------------cCCcEEEEECCCCHHHHHH
Confidence 467999999999999998888764 1246778899999999999
Q ss_pred HHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcc
Q psy14582 997 VEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRW 1076 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~ 1076 (1689)
+.+.|.+|..++|++|+++++|+|+|++++| | +. ++
T Consensus 70 ~~~~f~~~~~~ili~t~~~~~G~d~~~~~~v-----------------i-----------------~~-----~~----- 105 (131)
T cd00079 70 VLKDFREGEIVVLVATDVIARGIDLPNVSVV-----------------I-----------------NY-----DL----- 105 (131)
T ss_pred HHHHHHcCCCcEEEEcChhhcCcChhhCCEE-----------------E-----------------Ee-----CC-----
Confidence 9999999999999777777777777776666 2 21 11
Q ss_pred eecCHHHHHHHhcccCCCCCCCccEEEEE
Q psy14582 1077 VELGALDVLQMLGRAGRPQYDTKGEGVLI 1105 (1689)
Q Consensus 1077 ~~~s~~d~lQm~GRAGR~g~d~~G~~iil 1105 (1689)
+.+..++.|++||+||.| ..|.++++
T Consensus 106 -~~~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 106 -PWSPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred -CCCHHHheecccccccCC--CCceEEeC
Confidence 356889999999999998 57877653
No 133
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=1.8e-08 Score=127.56 Aligned_cols=62 Identities=13% Similarity=-0.008 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
.|+++|--..-..+ .| -|+...||+|||+++.+|+..... .|..+-+++|+--||.|-++.+
T Consensus 78 r~ydvQlig~l~Ll-~G--~VaEM~TGEGKTLvA~l~a~l~AL-----------~G~~VhvvT~NdyLA~RDae~m 139 (764)
T PRK12326 78 RPFDVQLLGALRLL-AG--DVIEMATGEGKTLAGAIAAAGYAL-----------QGRRVHVITVNDYLARRDAEWM 139 (764)
T ss_pred CcchHHHHHHHHHh-CC--CcccccCCCCHHHHHHHHHHHHHH-----------cCCCeEEEcCCHHHHHHHHHHH
Confidence 57889988875555 44 377999999999999999876554 3457999999999999987544
No 134
>KOG0330|consensus
Probab=99.10 E-value=1.7e-09 Score=124.86 Aligned_cols=60 Identities=22% Similarity=0.376 Sum_probs=54.3
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
.|-..+++|++|..++||||+..++|+|+|-..|||. ||- |.+..-.+.|+||.+ +-|..
T Consensus 338 ~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN----yDi---------P~~skDYIHRvGRta--RaGrs 397 (476)
T KOG0330|consen 338 KRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN----YDI---------PTHSKDYIHRVGRTA--RAGRS 397 (476)
T ss_pred HHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe----cCC---------CCcHHHHHHHccccc--ccCCC
Confidence 7899999999999999999999999999999988875 664 899999999999988 77744
No 135
>PTZ00110 helicase; Provisional
Probab=99.09 E-value=2.5e-09 Score=137.67 Aligned_cols=290 Identities=16% Similarity=0.160 Sum_probs=150.7
Q ss_pred eecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccc-------c
Q psy14582 742 IVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG-------K 814 (1689)
Q Consensus 742 i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liI-------i 814 (1689)
+|...|-..-....+++.+|||+|||++|++|++..+...... ....++.+||++|||+|+.|+...+- +
T Consensus 156 iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~---~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i 232 (545)
T PTZ00110 156 IQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL---RYGDGPIVLVLAPTRELAEQIREQCNKFGASSKI 232 (545)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc---cCCCCcEEEEECChHHHHHHHHHHHHHHhcccCc
Confidence 4555666666667889999999999999999998887542110 11236789999999999999532211 1
Q ss_pred CCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEEEEeec
Q psy14582 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVT 893 (1689)
Q Consensus 815 DEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~ 893 (1689)
.-+-..++ ....... .+.....|+. ||. ..+.+++..... . .+ ...++.++
T Consensus 233 ~~~~~~gg~~~~~q~~-----------~l~~~~~IlV--aTP---grL~d~l~~~~~----~----l~----~v~~lViD 284 (545)
T PTZ00110 233 RNTVAYGGVPKRGQIY-----------ALRRGVEILI--ACP---GRLIDFLESNVT----N----LR----RVTYLVLD 284 (545)
T ss_pred cEEEEeCCCCHHHHHH-----------HHHcCCCEEE--ECH---HHHHHHHHcCCC----C----hh----hCcEEEee
Confidence 11111122 1111111 1122445554 332 344455543210 0 01 12234444
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHh-CCCeEEEEeCCh-HHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccc
Q psy14582 894 EKKALKRFQVMNDIVYEKVMEHA-GRNQLLVFVHSR-KETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKN 971 (1689)
Q Consensus 894 ~~~~~~~~~~m~~~~~~~i~~~~-~~~~vLVFv~sr-k~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~ 971 (1689)
+-+..-.. -....+..+.... +..|++.|..|- ++...+++.+............. . + ...
T Consensus 285 EAd~mld~--gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~------~---l------~~~ 347 (545)
T PTZ00110 285 EADRMLDM--GFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSL------D---L------TAC 347 (545)
T ss_pred hHHhhhhc--chHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCC------c---c------ccC
Confidence 43322110 0111222333333 456899999884 45566665554211000000000 0 0 000
Q ss_pred hhhhcccCCceeEeccCCCHHHHHHHHHH---HhcCCeEEEEEcchhc-----------cCCCC----CCcceeehhhHH
Q psy14582 972 GELRDLLPYGFAIHHAGMTRVDRTLVEDL---FADRHIQVLVSTATLA-----------WGVNL----PAHTVVDRTLVE 1033 (1689)
Q Consensus 972 ~~L~~~l~~Gi~~hHagl~~~dR~~ve~~---F~~g~i~VLVaT~vl~-----------rGIDI----p~V~~V~R~~~~ 1033 (1689)
.. +..-+.+... ...+..+.+. .....-++||.++.-. .|+.. .+...-+|..++
T Consensus 348 ~~----i~q~~~~~~~---~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il 420 (545)
T PTZ00110 348 HN----IKQEVFVVEE---HEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVL 420 (545)
T ss_pred CC----eeEEEEEEec---hhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHH
Confidence 00 0000111110 0111111111 1112234444443211 23221 223333899999
Q ss_pred HHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1034 DLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1034 ~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
+.|++|.+++||||+.+++|+|+|.-.+||. || .+.+....+.|+||.| +.|.
T Consensus 421 ~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----~d---------~P~s~~~yvqRiGRtG--R~G~ 473 (545)
T PTZ00110 421 NEFKTGKSPIMIATDVASRGLDVKDVKYVIN----FD---------FPNQIEDYVHRIGRTG--RAGA 473 (545)
T ss_pred HHHhcCCCcEEEEcchhhcCCCcccCCEEEE----eC---------CCCCHHHHHHHhcccc--cCCC
Confidence 9999999999999999999999998888874 33 7888999999999998 7664
No 136
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.08 E-value=3.3e-08 Score=132.30 Aligned_cols=86 Identities=22% Similarity=0.255 Sum_probs=59.1
Q ss_pred CceeEeccCCCHHHHHHHHHHHhcC---CeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCC
Q psy14582 980 YGFAIHHAGMTRVDRTLVEDLFADR---HIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNL 1056 (1689)
Q Consensus 980 ~Gi~~hHagl~~~dR~~ve~~F~~g---~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNL 1056 (1689)
+++...||+++..+|..+.+.|.+. ..-+|++|.+++.|||+...++|
T Consensus 512 ~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~V----------------------------- 562 (1033)
T PLN03142 512 YQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIV----------------------------- 562 (1033)
T ss_pred CcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEE-----------------------------
Confidence 4456679999999999999999753 34567555555555555544444
Q ss_pred CCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1057 PAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1057 Pa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
| +||+ +.++....|++|||-|-|-...-.++-++....
T Consensus 563 -----I-----iyD~------dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 563 -----I-----LYDS------DWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred -----E-----EeCC------CCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 2 3554 356889999999999999555444555555543
No 137
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.08 E-value=1.6e-09 Score=139.01 Aligned_cols=64 Identities=23% Similarity=0.280 Sum_probs=54.4
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
+...-+|..+++.|++|.+++||||+++++|+|+|.-..||. --.+.+....+.|+||.| +.|.
T Consensus 401 ~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~-------------~d~P~s~~~yihRiGRaG--R~g~ 464 (518)
T PLN00206 401 EKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII-------------FDMPNTIKEYIHQIGRAS--RMGE 464 (518)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE-------------eCCCCCHHHHHHhccccc--cCCC
Confidence 344458999999999999999999999999999998877764 145788999999999998 7663
No 138
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.06 E-value=3.3e-10 Score=107.17 Aligned_cols=73 Identities=32% Similarity=0.517 Sum_probs=62.8
Q ss_pred cCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCC
Q psy14582 978 LPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1057 (1689)
Q Consensus 978 l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLP 1057 (1689)
....++++||+++..+|..+++.|.+|...|||||+++++|+|+|++++| |
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~v-----------------i------------ 56 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHV-----------------I------------ 56 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEE-----------------E------------
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccc-----------------c------------
Confidence 45678899999999999999999999999999888888888888888887 2
Q ss_pred CceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCC
Q psy14582 1058 AHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1058 a~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g 1095 (1689)
.|++ +.++.+|.|++||+||.|
T Consensus 57 ----------~~~~------~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 57 ----------FYDP------PWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp ----------ESSS------ESSHHHHHHHHTTSSTTT
T ss_pred ----------cccc------CCCHHHHHHHhhcCCCCC
Confidence 2332 357999999999999976
No 139
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.06 E-value=1.3e-09 Score=120.66 Aligned_cols=69 Identities=29% Similarity=0.496 Sum_probs=59.7
Q ss_pred CCCCCCHHHHHHHHHHHhcC-CcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 478 DFKTLNRIQSRLCKSALESD-ENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g-~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
++.+++++|.++++.++ .+ +++++++|||||||.++..+++..+... ...+++|++|+++++.|....+
T Consensus 5 ~~~~~~~~Q~~~~~~~~-~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---------~~~~~l~~~p~~~~~~~~~~~~ 74 (201)
T smart00487 5 GFEPLRPYQKEAIEALL-SGLRDVILAAPTGSGKTLAALLPALEALKRG---------KGKRVLVLVPTRELAEQWAEEL 74 (201)
T ss_pred CCCCCCHHHHHHHHHHH-cCCCcEEEECCCCCchhHHHHHHHHHHhccc---------CCCcEEEEeCCHHHHHHHHHHH
Confidence 67889999999999888 55 8999999999999999999999887643 1348999999999999987554
No 140
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=3.6e-08 Score=127.77 Aligned_cols=63 Identities=19% Similarity=0.035 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
-.|+++|--.- .+|. .--|+...||+|||+++.+|++-... .|..+-+++|+--||.|-+..+
T Consensus 81 m~~ydVQliGg-~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al-----------~G~~VhvvT~ndyLA~RD~e~m 143 (913)
T PRK13103 81 MRHFDVQLIGG-MTLH--EGKIAEMRTGEGKTLVGTLAVYLNAL-----------SGKGVHVVTVNDYLARRDANWM 143 (913)
T ss_pred CCcchhHHHhh-hHhc--cCccccccCCCCChHHHHHHHHHHHH-----------cCCCEEEEeCCHHHHHHHHHHH
Confidence 35778887654 2453 44588999999999999999976554 3457999999999999987544
No 141
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.05 E-value=1.5e-09 Score=143.60 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=53.5
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEE
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGV 1103 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~i 1103 (1689)
+|..++++|++|++++||||++|++|+|+|.-.+||. --.+.+....+.|+||+| +.|..=
T Consensus 317 eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~-------------~~~P~s~~~y~qRiGRaG--R~G~~g 377 (742)
T TIGR03817 317 DRRELERALRDGELLGVATTNALELGVDISGLDAVVI-------------AGFPGTRASLWQQAGRAG--RRGQGA 377 (742)
T ss_pred HHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE-------------eCCCCCHHHHHHhccccC--CCCCCc
Confidence 8999999999999999999999999999998666653 267788999999999999 877543
No 142
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.04 E-value=4.2e-10 Score=141.18 Aligned_cols=64 Identities=25% Similarity=0.379 Sum_probs=55.2
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
...-+|..+++.|++|++++||||+++++|+|+|.-.+||. || .+.+....+.|+||.| +.|..
T Consensus 289 ~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~----~d---------~P~s~~~yiqR~GR~g--R~G~~ 352 (423)
T PRK04837 289 VAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN----YD---------LPDDCEDYVHRIGRTG--RAGAS 352 (423)
T ss_pred CChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE----eC---------CCCchhheEecccccc--CCCCC
Confidence 33447999999999999999999999999999999887764 33 7889999999999998 77754
No 143
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.03 E-value=6.3e-09 Score=131.69 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=51.9
Q ss_pred eehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1027 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1027 V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
-+|..+++.|++|.+++||||+++++|+|+|...+||. || .+.+....+.|+||.| +.|
T Consensus 282 ~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~---------~P~~~~~yvqR~GRaG--R~g 340 (456)
T PRK10590 282 GARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN----YE---------LPNVPEDYVHRIGRTG--RAA 340 (456)
T ss_pred HHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE----eC---------CCCCHHHhhhhccccc--cCC
Confidence 37999999999999999999999999999998887764 32 6778899999999998 665
No 144
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.00 E-value=4.4e-09 Score=132.52 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=53.9
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
+...-+|..+++.|++|.+++||||+.+++|+|+|...+||. --.+.+....+.|+||.| +.|.
T Consensus 278 ~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~-------------~d~p~s~~~yiqr~GR~g--R~g~ 341 (434)
T PRK11192 278 EMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN-------------FDMPRSADTYLHRIGRTG--RAGR 341 (434)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE-------------ECCCCCHHHHhhcccccc--cCCC
Confidence 344448999999999999999999999999999999888873 134578889999999998 6553
No 145
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.99 E-value=2.8e-08 Score=126.82 Aligned_cols=67 Identities=25% Similarity=0.396 Sum_probs=51.5
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
|+ .|...|+--...++ .|+..-+.||||.|||.--++..+- +.. .|.|++||.||..|+.|.+..+.
T Consensus 80 G~-~~ws~QR~WakR~~-rg~SFaiiAPTGvGKTTfg~~~sl~-~a~----------kgkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLV-RGKSFAIIAPTGVGKTTFGLLMSLY-LAK----------KGKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred CC-CchHHHHHHHHHHH-cCCceEEEcCCCCchhHHHHHHHHH-HHh----------cCCeEEEEecCHHHHHHHHHHHH
Confidence 55 79999977666677 8999999999999999654443332 221 34699999999999999986553
No 146
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.98 E-value=1.7e-08 Score=127.33 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=54.0
Q ss_pred CCCCCCHHHHHHHHHH---HhcCCc-EEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 478 DFKTLNRIQSRLCKSA---LESDEN-LLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~a---l~~g~n-vLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
+-..++++|..|+..+ +..|++ +|+..-||+|||..|+--| ..|.++. .-.|+||++-.++|+.|-+
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii-~rL~r~~--------~~KRVLFLaDR~~Lv~QA~ 232 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAII-DRLIKSG--------WVKRVLFLADRNALVDQAY 232 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHH-HHHHhcc--------hhheeeEEechHHHHHHHH
Confidence 3467899999999764 334443 8999999999999986555 4454432 2248999999999999988
Q ss_pred hcccc
Q psy14582 554 GNFGK 558 (1689)
Q Consensus 554 ~~f~k 558 (1689)
+.|..
T Consensus 233 ~af~~ 237 (875)
T COG4096 233 GAFED 237 (875)
T ss_pred HHHHH
Confidence 66643
No 147
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.96 E-value=4.3e-09 Score=139.35 Aligned_cols=71 Identities=27% Similarity=0.255 Sum_probs=58.3
Q ss_pred CCCCCCHHHHHHHHH---HHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhh
Q psy14582 478 DFKTLNRIQSRLCKS---ALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 554 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~---al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~ 554 (1689)
...++++.|.+.+.. ++..++.+++.||||+|||++|++|++...... +.+++|.++|+.|-.|+..
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~----------~~~viist~t~~lq~q~~~ 81 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE----------GKKVIISTRTKALQEQLLE 81 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc----------CCcEEEECCCHHHHHHHHH
Confidence 456799999987754 465677799999999999999999999876542 3589999999999999987
Q ss_pred cccc
Q psy14582 555 NFGK 558 (1689)
Q Consensus 555 ~f~k 558 (1689)
+...
T Consensus 82 ~~~~ 85 (654)
T COG1199 82 EDLP 85 (654)
T ss_pred hhcc
Confidence 6544
No 148
>KOG0344|consensus
Probab=98.96 E-value=5.8e-09 Score=126.91 Aligned_cols=76 Identities=22% Similarity=0.380 Sum_probs=62.3
Q ss_pred HHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceec
Q psy14582 1000 LFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVEL 1079 (1689)
Q Consensus 1000 ~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~ 1079 (1689)
.|.++.+.++.+ .....+|+.++.+||-|++++||||..|++|+++-....||+ ||
T Consensus 409 ~~~~i~v~vIh~-----------e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD--------- 464 (593)
T KOG0344|consen 409 IYDNINVDVIHG-----------ERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----YD--------- 464 (593)
T ss_pred hccCcceeeEec-----------ccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe----cC---------
Confidence 456666777633 334458999999999999999999999999999998888876 55
Q ss_pred CHHHHHHHhcccCCCCCCCccE
Q psy14582 1080 GALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1080 s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
-+..-++++.|.||.| +.|.
T Consensus 465 ~p~s~~syihrIGRtg--Rag~ 484 (593)
T KOG0344|consen 465 FPQSDLSYIHRIGRTG--RAGR 484 (593)
T ss_pred CCchhHHHHHHhhccC--CCCC
Confidence 7788899999999988 6653
No 149
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.94 E-value=1.1e-08 Score=138.38 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=48.9
Q ss_pred ceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCC
Q psy14582 1025 TVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1025 ~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g 1095 (1689)
..-+|..+++.|++|.+++||||++|++|+|+|+. ..-..--++.+....+.|+||+|
T Consensus 325 s~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~V-------------d~VI~~~~P~sv~~ylQRiGRaG 382 (876)
T PRK13767 325 SREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYI-------------DLVVLLGSPKSVSRLLQRIGRAG 382 (876)
T ss_pred CHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCC-------------cEEEEeCCCCCHHHHHHhcccCC
Confidence 33389999999999999999999999999999976 11222346789999999999998
No 150
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.94 E-value=1.3e-08 Score=132.43 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=54.9
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
++..-+|+.+++.|++|++++||||+.+++|+|+|...+||. --.+.+..+.+.|+||.| ..|..
T Consensus 278 d~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~-------------~d~P~~~e~yvqRiGRtG--RaGr~ 342 (629)
T PRK11634 278 DMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN-------------YDIPMDSESYVHRIGRTG--RAGRA 342 (629)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE-------------eCCCCCHHHHHHHhcccc--CCCCc
Confidence 334448999999999999999999999999999998888874 145778999999999998 76643
No 151
>KOG0342|consensus
Probab=98.94 E-value=5.6e-09 Score=124.20 Aligned_cols=275 Identities=20% Similarity=0.277 Sum_probs=144.2
Q ss_pred ceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhcc----ccCCce----eecCCchh
Q psy14582 755 PVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF----GKDEIH----LLHDERGP 826 (1689)
Q Consensus 755 pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~li----IiDEiH----ll~d~rG~ 826 (1689)
.+...|.||+|||++|++|.++.+.+..... ..+..+|+++|||+|+.|+.... -.-|-+ .++++.-.
T Consensus 121 Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~~----r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~ 196 (543)
T KOG0342|consen 121 DVLAAAKTGTGKTLAFLLPAIELLRKLKFKP----RNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFS 196 (543)
T ss_pred cceeeeccCCCceeeehhHHHHHHHhcccCC----CCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccch
Confidence 5677789999999999999999987653322 25788999999999999963221 111111 12222111
Q ss_pred HHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhH
Q psy14582 827 VLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMND 906 (1689)
Q Consensus 827 ~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~ 906 (1689)
. | ...+...+.++. ||.. .+-+||...+. |.|.. ++ +..+++....-.+ -.+
T Consensus 197 ~-e---------~~kl~k~~nili--ATPG---RLlDHlqNt~~---f~~r~------~k--~lvlDEADrlLd~--GF~ 248 (543)
T KOG0342|consen 197 V-E---------ADKLVKGCNILI--ATPG---RLLDHLQNTSG---FLFRN------LK--CLVLDEADRLLDI--GFE 248 (543)
T ss_pred H-H---------HHHhhccccEEE--eCCc---hHHhHhhcCCc---chhhc------cc--eeEeecchhhhhc--ccH
Confidence 1 1 111223444433 7866 45566665432 22211 11 1112221111000 001
Q ss_pred HHHHHHHHHhC-CCeEEEEeCChH-HHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeE
Q psy14582 907 IVYEKVMEHAG-RNQLLVFVHSRK-ETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAI 984 (1689)
Q Consensus 907 ~~~~~i~~~~~-~~~vLVFv~srk-~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~ 984 (1689)
.-...+....+ ..|+++|..|.. +++.+|+-.... +.. |+...... ...--+-+..|+-+
T Consensus 249 ~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~----d~~--~v~~~d~~------------~~~The~l~Qgyvv 310 (543)
T KOG0342|consen 249 EDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKR----DPV--FVNVDDGG------------ERETHERLEQGYVV 310 (543)
T ss_pred HHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcC----Cce--EeecCCCC------------CcchhhcccceEEe
Confidence 11122333333 568999998853 455555543321 111 11100000 00001112222211
Q ss_pred eccCCCHHHH-HHHHHHHhcC--CeEEEE-Ecchh--------ccCCCCCCccee------ehhhHHHHhhcccceEEEE
Q psy14582 985 HHAGMTRVDR-TLVEDLFADR--HIQVLV-STATL--------AWGVNLPAHTVV------DRTLVEDLFADRHIQVLVS 1046 (1689)
Q Consensus 985 hHagl~~~dR-~~ve~~F~~g--~i~VLV-aT~vl--------~rGIDIp~V~~V------~R~~~~~~f~~g~i~vLVa 1046 (1689)
--+ ..| ..+....+.. ..+|+| |+... -.-+|+|-..+- .|+.+-..|+..+-.+|+|
T Consensus 311 ~~~----~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~c 386 (543)
T KOG0342|consen 311 APS----DSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVC 386 (543)
T ss_pred ccc----cchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEe
Confidence 111 112 2222222221 133433 22211 135666643333 8999999999999999999
Q ss_pred cccccccCCCCCceEEEeceeeecCCCCcce-ec-CHHHHHHHhcccCCCCCCCcc
Q psy14582 1047 TATLAWGVNLPAHTVIIKGTQIYNPEKGRWV-EL-GALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1047 T~TLa~GvNLPa~~VII~gt~~yd~~~~~~~-~~-s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
|+..|+|+|+|+.. |+ .| ++.+--|.+.|.||.| +.|
T Consensus 387 TDVaARGlD~P~V~---------------~VvQ~~~P~d~~~YIHRvGRTa--R~g 425 (543)
T KOG0342|consen 387 TDVAARGLDIPDVD---------------WVVQYDPPSDPEQYIHRVGRTA--REG 425 (543)
T ss_pred cchhhccCCCCCce---------------EEEEeCCCCCHHHHHHHhcccc--ccC
Confidence 99999999999882 44 44 6788999999999988 655
No 152
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.93 E-value=1.2e-08 Score=129.86 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=54.3
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
...-+|..+++.|++|.+++||||+++++|+|+|.-.+||. --.+.+....+.|+||.| +.|.
T Consensus 369 ~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~-------------~~~P~s~~~y~Qr~GRaG--R~g~ 431 (475)
T PRK01297 369 VPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN-------------FTLPEDPDDYVHRIGRTG--RAGA 431 (475)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE-------------eCCCCCHHHHHHhhCccC--CCCC
Confidence 33447889999999999999999999999999999888874 245688999999999998 7664
No 153
>KOG0338|consensus
Probab=98.93 E-value=1.9e-08 Score=119.39 Aligned_cols=67 Identities=22% Similarity=0.324 Sum_probs=57.8
Q ss_pred CCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1022 PAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1022 p~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
++++.-+|-.++.+|+.++|++||||+..++|++++..-+||. |+ -|..+-|++.|.||.. +.|.
T Consensus 458 GsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----y~---------mP~t~e~Y~HRVGRTA--RAGR 522 (691)
T KOG0338|consen 458 GSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN----YA---------MPKTIEHYLHRVGRTA--RAGR 522 (691)
T ss_pred ccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe----cc---------CchhHHHHHHHhhhhh--hccc
Confidence 4555669999999999999999999999999999999888876 43 2999999999999986 6675
Q ss_pred EE
Q psy14582 1102 GV 1103 (1689)
Q Consensus 1102 ~i 1103 (1689)
+=
T Consensus 523 aG 524 (691)
T KOG0338|consen 523 AG 524 (691)
T ss_pred Cc
Confidence 53
No 154
>KOG0343|consensus
Probab=98.91 E-value=1.2e-08 Score=122.03 Aligned_cols=278 Identities=19% Similarity=0.221 Sum_probs=147.1
Q ss_pred cccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccccCCce------eecCC
Q psy14582 750 AETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIH------LLHDE 823 (1689)
Q Consensus 750 ~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiH------ll~d~ 823 (1689)
+-....|.=.|.||||||++|+.|+++.+....... ..|.-+|||+|||+||.|+++.+.-=--| ++.+.
T Consensus 103 aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~----~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG 178 (758)
T KOG0343|consen 103 ALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP----TDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGG 178 (758)
T ss_pred hccCcccccccccCCCceeeehHHHHHHHHHcCCCC----CCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecC
Confidence 334445555688999999999999999987654332 24778999999999999987665432222 22222
Q ss_pred chhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHH
Q psy14582 824 RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQV 903 (1689)
Q Consensus 824 rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~ 903 (1689)
.. ++.=..|+ +.+-|+.. |.. .+.+.+.-++ +|+ ...+ ++...++...+ +..
T Consensus 179 ~~--~k~E~eRi--------~~mNILVC--TPG---RLLQHmde~~-----~f~----t~~l--QmLvLDEADR~--LDM 230 (758)
T KOG0343|consen 179 KD--VKFELERI--------SQMNILVC--TPG---RLLQHMDENP-----NFS----TSNL--QMLVLDEADRM--LDM 230 (758)
T ss_pred ch--hHHHHHhh--------hcCCeEEe--chH---HHHHHhhhcC-----CCC----CCcc--eEEEeccHHHH--HHH
Confidence 22 22212222 22334333 322 2333333221 122 1223 23333332221 111
Q ss_pred hhHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHhhhhccc-cchhhhcCchhHHHHHHhhhhccchhhhcccCCc
Q psy14582 904 MNDIVYEKVMEHAG-RNQLLVFVHSRKETGKTARAIRDMCLEKDT-LGQFLREGSASMEVLRTEADQVKNGELRDLLPYG 981 (1689)
Q Consensus 904 m~~~~~~~i~~~~~-~~~vLVFv~srk~~~~~a~~L~~~~~~~~~-l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~G 981 (1689)
-....++.|.+..+ ..|+|.|..|.... ++. |......... ++.......+..+.|+..
T Consensus 231 GFk~tL~~Ii~~lP~~RQTLLFSATqt~s--vkd-LaRLsL~dP~~vsvhe~a~~atP~~L~Q~---------------- 291 (758)
T KOG0343|consen 231 GFKKTLNAIIENLPKKRQTLLFSATQTKS--VKD-LARLSLKDPVYVSVHENAVAATPSNLQQS---------------- 291 (758)
T ss_pred hHHHHHHHHHHhCChhheeeeeecccchh--HHH-HHHhhcCCCcEEEEeccccccChhhhhhe----------------
Confidence 12234455556655 57999999886543 222 2222111110 000000000000001000
Q ss_pred eeEeccCCCHHHHHHHHHHHhcCC----eEEEEEcch-----------hccCCCC----CCcceeehhhHHHHhhcccce
Q psy14582 982 FAIHHAGMTRVDRTLVEDLFADRH----IQVLVSTAT-----------LAWGVNL----PAHTVVDRTLVEDLFADRHIQ 1042 (1689)
Q Consensus 982 i~~hHagl~~~dR~~ve~~F~~g~----i~VLVaT~v-----------l~rGIDI----p~V~~V~R~~~~~~f~~g~i~ 1042 (1689)
+--++-.++..++-.|-..+ .-|.++|.- +.-|+-+ +....-.|..+...|.....-
T Consensus 292 ----y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~ 367 (758)
T KOG0343|consen 292 ----YVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAV 367 (758)
T ss_pred ----EEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcce
Confidence 11122334444444444332 223333321 1113322 222223788999999999999
Q ss_pred EEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCC
Q psy14582 1043 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1043 vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g 1095 (1689)
+|+||..+|+|+++||..+||. ||. |.++-+.+.|+||..
T Consensus 368 vLF~TDv~aRGLDFpaVdwViQ----~DC---------Pedv~tYIHRvGRtA 407 (758)
T KOG0343|consen 368 VLFCTDVAARGLDFPAVDWVIQ----VDC---------PEDVDTYIHRVGRTA 407 (758)
T ss_pred EEEeehhhhccCCCcccceEEE----ecC---------chhHHHHHHHhhhhh
Confidence 9999999999999999998874 553 999999999999964
No 155
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.91 E-value=1e-08 Score=132.50 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=53.1
Q ss_pred ceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1025 TVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1025 ~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
..-+|..+++.|++|.+++||||+++++|+|+|...+||. ---+.+....+.|+||.| ..|.
T Consensus 292 ~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn-------------yd~P~s~~~yvqRiGRaG--R~G~ 353 (572)
T PRK04537 292 PQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN-------------YDLPFDAEDYVHRIGRTA--RLGE 353 (572)
T ss_pred CHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE-------------cCCCCCHHHHhhhhcccc--cCCC
Confidence 3347999999999999999999999999999998877763 134678999999999998 7664
No 156
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.91 E-value=2.1e-08 Score=127.34 Aligned_cols=66 Identities=30% Similarity=0.271 Sum_probs=55.1
Q ss_pred CCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1022 PAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1022 p~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
+++..-+|+.+++.|++|.+++||||+.+++|+|+|...+||. ---+.+....+.|+||.| +.|.
T Consensus 274 g~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~-------------~d~p~~~~~yiqR~GRtG--R~g~ 338 (460)
T PRK11776 274 GDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN-------------YELARDPEVHVHRIGRTG--RAGS 338 (460)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE-------------ecCCCCHhHhhhhccccc--CCCC
Confidence 3445558999999999999999999999999999999888774 144567889999999998 7664
Q ss_pred E
Q psy14582 1102 G 1102 (1689)
Q Consensus 1102 ~ 1102 (1689)
.
T Consensus 339 ~ 339 (460)
T PRK11776 339 K 339 (460)
T ss_pred c
Confidence 3
No 157
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.91 E-value=3.7e-07 Score=120.56 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=54.6
Q ss_pred HHHhccCCCCCCHHHHHHHHH---HHhc-----CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEc
Q psy14582 472 VQHAFEDFKTLNRIQSRLCKS---ALES-----DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVA 543 (1689)
Q Consensus 472 ~~~~f~g~~~~tpiQ~~aip~---al~~-----g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~la 543 (1689)
+...++|| ++++-|.+.... ++.. ++.+++.||||+|||++|++|++-.... .+.++||=+
T Consensus 17 l~~~~~~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~----------~~k~vVIST 85 (697)
T PRK11747 17 LQEQLPGF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA----------EKKKLVIST 85 (697)
T ss_pred HHHhCCCC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH----------cCCeEEEEc
Confidence 34444566 579999985544 4544 3678999999999999999999765443 235899999
Q ss_pred cchhhhHhhhh
Q psy14582 544 PMRSLVQEMVG 554 (1689)
Q Consensus 544 PtreLa~Qi~~ 554 (1689)
.|++|-.|++.
T Consensus 86 ~T~~LQeQL~~ 96 (697)
T PRK11747 86 ATVALQEQLVS 96 (697)
T ss_pred CCHHHHHHHHh
Confidence 99999999863
No 158
>PTZ00424 helicase 45; Provisional
Probab=98.89 E-value=3.2e-08 Score=123.42 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=49.9
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceec-CHHHHHHHhcccCCCCCCCcc
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVEL-GALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~-s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
...-+|..++++|++|++++||||+++++|+|+|... ..+.+ .+.+....+.|+||+| +.|
T Consensus 301 ~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~--------------~VI~~~~p~s~~~y~qr~GRag--R~g 362 (401)
T PTZ00424 301 MDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVS--------------LVINYDLPASPENYIHRIGRSG--RFG 362 (401)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCC--------------EEEEECCCCCHHHEeecccccc--cCC
Confidence 3344899999999999999999999999999999772 23344 3567889999999998 655
No 159
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=1.2e-07 Score=126.10 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=61.3
Q ss_pred CCCCCCHHHHHHHHHH---HhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhh
Q psy14582 478 DFKTLNRIQSRLCKSA---LESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 554 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~a---l~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~ 554 (1689)
.|..++|.|.+.+..+ +.+|.++++.||||+|||++.+.|.|..+.... ...+++|.+.|..-..|..+
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------~~~kIiy~sRThsQl~q~i~ 78 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------EVRKIIYASRTHSQLEQATE 78 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------ccccEEEEcccchHHHHHHH
Confidence 5777899999877654 567999999999999999999999998776431 23599999999999999998
Q ss_pred cccc
Q psy14582 555 NFGK 558 (1689)
Q Consensus 555 ~f~k 558 (1689)
++++
T Consensus 79 Elk~ 82 (705)
T TIGR00604 79 ELRK 82 (705)
T ss_pred HHHh
Confidence 8866
No 160
>KOG0326|consensus
Probab=98.87 E-value=1e-08 Score=115.35 Aligned_cols=311 Identities=20% Similarity=0.235 Sum_probs=176.1
Q ss_pred cccccccCCCcceeEEEEeCCCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeE--
Q psy14582 681 QWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSF-- 758 (1689)
Q Consensus 681 ~wd~~~~g~~e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~-- 758 (1689)
.|....+=...+-.+..+|+..-+-..+|.+-|++..+..-....|.-|-+- .|+.+|+.+
T Consensus 60 dwk~~l~lpp~d~R~~t~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPi-----------------QeesIPiaLtG 122 (459)
T KOG0326|consen 60 DWKATLKLPPKDTRYKTEDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPI-----------------QEESIPIALTG 122 (459)
T ss_pred hhHHhccCCCCCccccccccccccCccHHHhhhhHHHHHHHHHhccCCCCCc-----------------cccccceeecc
Confidence 4444444333344455667666666677888888776655444455443321 234555544
Q ss_pred -----eecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh----------h--ccc--------
Q psy14582 759 -----RLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV----------G--NFG-------- 813 (1689)
Q Consensus 759 -----~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v----------~--liI-------- 813 (1689)
+|..|+|||.+|.+|+++.+... ....++++++|+|+||.|.- + +.+
T Consensus 123 rdiLaRaKNGTGKT~a~~IP~Lekid~~--------~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lr 194 (459)
T KOG0326|consen 123 RDILARAKNGTGKTAAYCIPVLEKIDPK--------KNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLR 194 (459)
T ss_pred hhhhhhccCCCCCccceechhhhhcCcc--------ccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccc
Confidence 37889999999999999988653 23578999999999999841 1 111
Q ss_pred -----c-CCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 814 -----K-DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 814 -----i-DEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
+ |-+|++.+++|++++.+-.+.- .-++.. +++++....- |.+
T Consensus 195 DDI~Rl~~~VH~~vgTPGRIlDL~~KgVa-----~ls~c~-------------------------~lV~DEADKl--Ls~ 242 (459)
T KOG0326|consen 195 DDIMRLNQTVHLVVGTPGRILDLAKKGVA-----DLSDCV-------------------------ILVMDEADKL--LSV 242 (459)
T ss_pred cceeeecCceEEEEcCChhHHHHHhcccc-----cchhce-------------------------EEEechhhhh--hch
Confidence 1 4467777777777665422110 001111 2222221110 000
Q ss_pred EEEeechhhHHHHHHHhhHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhh
Q psy14582 888 QYIGVTEKKALKRFQVMNDIVYEKVMEHAG-RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEA 966 (1689)
Q Consensus 888 ~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~-~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~ 966 (1689)
.| ....+.++...+ .+|++.|..|=--+.+ ..+..+....-.
T Consensus 243 ------------~F----~~~~e~li~~lP~~rQillySATFP~tVk--~Fm~~~l~kPy~------------------- 285 (459)
T KOG0326|consen 243 ------------DF----QPIVEKLISFLPKERQILLYSATFPLTVK--GFMDRHLKKPYE------------------- 285 (459)
T ss_pred ------------hh----hhHHHHHHHhCCccceeeEEecccchhHH--HHHHHhccCcce-------------------
Confidence 01 122233444444 5688888876433211 111111111100
Q ss_pred hhccchhhhcccCCceeEeccCCCHHHHHHHHH-HHhcCC--eEEEEEcch-----hccCCCCCCcce---------eeh
Q psy14582 967 DQVKNGELRDLLPYGFAIHHAGMTRVDRTLVED-LFADRH--IQVLVSTAT-----LAWGVNLPAHTV---------VDR 1029 (1689)
Q Consensus 967 ~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~-~F~~g~--i~VLVaT~v-----l~rGIDIp~V~~---------V~R 1029 (1689)
-+-+.++-..||.-+++=....++-.-+. +|..=. -.|++|.++ ++.-|.--+..+ -.|
T Consensus 286 ----INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hR 361 (459)
T KOG0326|consen 286 ----INLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHR 361 (459)
T ss_pred ----eehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhh
Confidence 01123344456665666555444443333 454332 245666543 122111111111 167
Q ss_pred hhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEE
Q psy14582 1030 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVL 1104 (1689)
Q Consensus 1030 ~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ii 1104 (1689)
..+-.-|++|.|+.||||+.+.+|+|++|.+|||. ||. +..---...|.||+| +.|.-=+
T Consensus 362 NrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN----FDf---------pk~aEtYLHRIGRsG--RFGhlGl 421 (459)
T KOG0326|consen 362 NRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN----FDF---------PKNAETYLHRIGRSG--RFGHLGL 421 (459)
T ss_pred hhhhhhhhccccceeeehhhhhcccccceeeEEEe----cCC---------CCCHHHHHHHccCCc--cCCCcce
Confidence 88889999999999999999999999999999986 553 777888999999998 7775443
No 161
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=6.3e-09 Score=132.79 Aligned_cols=63 Identities=29% Similarity=0.456 Sum_probs=56.0
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
+...-+|..++..|++|.+++||||+.+|+|+|+|....||. ||. +.+.-..+.|.||.| +.|
T Consensus 306 ~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin----yD~---------p~~~e~yvHRiGRTg--RaG 368 (513)
T COG0513 306 DLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDL---------PLDPEDYVHRIGRTG--RAG 368 (513)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE----ccC---------CCCHHHheeccCccc--cCC
Confidence 334448999999999999999999999999999998888864 775 999999999999998 777
No 162
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.84 E-value=3.5e-08 Score=130.41 Aligned_cols=65 Identities=17% Similarity=0.331 Sum_probs=55.4
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
++.--+|..+++.|..|.+++||||.+++||||+|..++||. ---+.++....-|+||+| +.|..
T Consensus 713 GLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH-------------ydlPkSiEsYyQriGRAG--RDG~~ 777 (1195)
T PLN03137 713 SMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH-------------HSLPKSIEGYHQECGRAG--RDGQR 777 (1195)
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE-------------cCCCCCHHHHHhhhcccC--CCCCC
Confidence 444448999999999999999999999999999999988875 134678999999999999 77643
No 163
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.83 E-value=4e-09 Score=116.03 Aligned_cols=62 Identities=34% Similarity=0.497 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHh------cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhh
Q psy14582 481 TLNRIQSRLCKSALE------SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 554 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~------~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~ 554 (1689)
+|+++|.+++..+++ ..+++++.||||||||.+++..+.+... ++++++|++.|+.|...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------------~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------------KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------------ceeEecCHHHHHHHHHH
Confidence 589999999988773 2589999999999999999976655432 79999999999999986
Q ss_pred cc
Q psy14582 555 NF 556 (1689)
Q Consensus 555 ~f 556 (1689)
.|
T Consensus 69 ~~ 70 (184)
T PF04851_consen 69 EF 70 (184)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 164
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=8e-07 Score=114.32 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHH-HHHhhcccCCCCCCCCCeEEEEEccchhhhHh
Q psy14582 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCML-QEIGKHINADGTINADEFKIIYVAPMRSLVQE 551 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL-~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Q 551 (1689)
.|+++|--.-- +|..| -|....||=|||+++.+|+. +.|. |..+-+|+..-=||..
T Consensus 78 r~ydVQliGgl-vLh~G--~IAEMkTGEGKTLvAtLpayLnAL~------------GkgVhVVTvNdYLA~R 134 (925)
T PRK12903 78 RPYDVQIIGGI-ILDLG--SVAEMKTGEGKTITSIAPVYLNALT------------GKGVIVSTVNEYLAER 134 (925)
T ss_pred CcCchHHHHHH-HHhcC--CeeeecCCCCccHHHHHHHHHHHhc------------CCceEEEecchhhhhh
Confidence 57888877653 55444 37999999999999999985 3343 2345666666667654
No 165
>KOG0335|consensus
Probab=98.81 E-value=8e-08 Score=116.62 Aligned_cols=65 Identities=28% Similarity=0.422 Sum_probs=55.4
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEec
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITN 1107 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~ 1107 (1689)
+|...+..|++|.+-+||||+.+|+|+|+|...-||. ||- +.++--.+.|.||.| +.|.+=..+.
T Consensus 375 er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn----yDm---------P~d~d~YvHRIGRTG--R~Gn~G~ats 439 (482)
T KOG0335|consen 375 EREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN----YDM---------PADIDDYVHRIGRTG--RVGNGGRATS 439 (482)
T ss_pred HHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE----eec---------CcchhhHHHhccccc--cCCCCceeEE
Confidence 7889999999999999999999999999996554543 653 999999999999999 8887765553
No 166
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.81 E-value=7.2e-07 Score=115.54 Aligned_cols=61 Identities=20% Similarity=0.089 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHH-HHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhh
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCML-QEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 554 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL-~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~ 554 (1689)
|+. |+++|--..- ++ .+.-|+...||.|||+++.+|+. +.+. |..+-+|+++..||.+-.+
T Consensus 74 G~r-~ydvQlig~l-~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~------------G~~VhVvT~NdyLA~RD~e 135 (870)
T CHL00122 74 GLR-HFDVQLIGGL-VL--NDGKIAEMKTGEGKTLVATLPAYLNALT------------GKGVHIVTVNDYLAKRDQE 135 (870)
T ss_pred CCC-CCchHhhhhH-hh--cCCccccccCCCCchHHHHHHHHHHHhc------------CCceEEEeCCHHHHHHHHH
Confidence 544 7888877652 44 35679999999999999999985 3332 3468999999999988763
No 167
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=1.5e-07 Score=119.81 Aligned_cols=64 Identities=23% Similarity=0.307 Sum_probs=54.5
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
+...-+|..+++.|++|.+++||||.++++|+|+|...+||. --.+.+......|+||+| +.|.
T Consensus 259 ~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~-------------~~~P~s~~~y~Qr~GRaG--R~G~ 322 (470)
T TIGR00614 259 GLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH-------------YSLPKSMESYYQESGRAG--RDGL 322 (470)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE-------------eCCCCCHHHHHhhhcCcC--CCCC
Confidence 344448999999999999999999999999999998877774 256678889999999998 7664
No 168
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.79 E-value=1.4e-06 Score=114.26 Aligned_cols=70 Identities=19% Similarity=0.107 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHh-------cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhh
Q psy14582 482 LNRIQSRLCKSALE-------SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 554 (1689)
Q Consensus 482 ~tpiQ~~aip~al~-------~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~ 554 (1689)
-..||-+|+..+.. .|-=++--|.||+|||++-.=-| ..|.. ...+.|..+..-.|.|.-|.-.
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaLsd--------~~~g~RfsiALGLRTLTLQTGd 479 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YALRD--------DKQGARFAIALGLRSLTLQTGH 479 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHhCC--------CCCCceEEEEccccceeccchH
Confidence 35699999988752 24446778999999999864332 33331 2356799999999999999887
Q ss_pred cccccc
Q psy14582 555 NFGKDE 560 (1689)
Q Consensus 555 ~f~kde 560 (1689)
.+++++
T Consensus 480 a~r~rL 485 (1110)
T TIGR02562 480 ALKTRL 485 (1110)
T ss_pred HHHHhc
Confidence 776643
No 169
>KOG0350|consensus
Probab=98.75 E-value=1e-08 Score=121.72 Aligned_cols=60 Identities=28% Similarity=0.477 Sum_probs=54.2
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
.|-..+.+|+.|.+++||||+.||+|+|+-..++||. ||+ +.+..+.+.||||.+ +.|..
T Consensus 471 ~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN----Yd~---------P~~~ktyVHR~GRTA--RAgq~ 530 (620)
T KOG0350|consen 471 RRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN----YDP---------PASDKTYVHRAGRTA--RAGQD 530 (620)
T ss_pred HHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee----cCC---------CchhhHHHHhhcccc--cccCC
Confidence 6788999999999999999999999999999998886 775 999999999999987 66644
No 170
>KOG0333|consensus
Probab=98.74 E-value=1.1e-07 Score=113.58 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=64.8
Q ss_pred chhccCCCCCCccee---------ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHH
Q psy14582 1013 ATLAWGVNLPAHTVV---------DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALD 1083 (1689)
Q Consensus 1013 ~vl~rGIDIp~V~~V---------~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d 1083 (1689)
++++.+++--+..++ +|..+++.|+.|..++||||...++|||+|....||. ||- ...
T Consensus 531 d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin----ydm---------aks 597 (673)
T KOG0333|consen 531 DALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN----YDM---------AKS 597 (673)
T ss_pred HHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee----cch---------hhh
Confidence 466677776665555 9999999999999999999999999999999988875 442 777
Q ss_pred HHHHhcccCCCCCCCccEEEEEe
Q psy14582 1084 VLQMLGRAGRPQYDTKGEGVLIT 1106 (1689)
Q Consensus 1084 ~lQm~GRAGR~g~d~~G~~iil~ 1106 (1689)
+.-...|.||.| ..|..=..+
T Consensus 598 ieDYtHRIGRTg--RAGk~Gtai 618 (673)
T KOG0333|consen 598 IEDYTHRIGRTG--RAGKSGTAI 618 (673)
T ss_pred HHHHHHHhcccc--ccccCceeE
Confidence 888999999998 777654433
No 171
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.71 E-value=4.8e-06 Score=107.82 Aligned_cols=59 Identities=22% Similarity=0.026 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
.|+++|--.- .+|. .--|+...||-|||+++.+|+.-... .|..+-+|++..-||..=.
T Consensus 85 r~ydVQliGg-l~Lh--~G~IAEM~TGEGKTL~atlpaylnAL-----------~GkgVhVVTvNdYLA~RDa 143 (939)
T PRK12902 85 RHFDVQLIGG-MVLH--EGQIAEMKTGEGKTLVATLPSYLNAL-----------TGKGVHVVTVNDYLARRDA 143 (939)
T ss_pred CcchhHHHhh-hhhc--CCceeeecCCCChhHHHHHHHHHHhh-----------cCCCeEEEeCCHHHHHhHH
Confidence 5788887654 2453 44589999999999999999865333 3346889999999998755
No 172
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.68 E-value=1.8e-07 Score=122.19 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=50.9
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecC-HHHHHHHhcccCCCCCCCcc
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELG-ALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s-~~d~lQm~GRAGR~g~d~~G 1100 (1689)
++..-+|..+++.|+.|.+++||||..+++|+|+|.. ...+.++ +.+......|+||+| +.|
T Consensus 269 ~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V--------------~~VI~~d~P~s~~~y~Qr~GRaG--R~G 331 (607)
T PRK11057 269 GLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNV--------------RFVVHFDIPRNIESYYQETGRAG--RDG 331 (607)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCc--------------CEEEEeCCCCCHHHHHHHhhhcc--CCC
Confidence 3344489999999999999999999999999999976 1233554 667889999999998 766
No 173
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.68 E-value=4.5e-08 Score=92.58 Aligned_cols=72 Identities=29% Similarity=0.473 Sum_probs=59.2
Q ss_pred CCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCC
Q psy14582 979 PYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPA 1058 (1689)
Q Consensus 979 ~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa 1058 (1689)
...+..+|++++..+|..+++.|.+|...|||+|+++++|+|+|.+++| +
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~v-----------------i------------- 60 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLV-----------------I------------- 60 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEE-----------------E-------------
Confidence 4568889999999999999999999999999777777777777776666 2
Q ss_pred ceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCC
Q psy14582 1059 HTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1059 ~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g 1095 (1689)
+. ++ +.+..+|.||+||+||.|
T Consensus 61 ----~~-----~~------~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 61 ----IY-----DL------PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred ----Ee-----CC------CCCHHHHHHhhcccccCC
Confidence 22 21 357899999999999975
No 174
>KOG0341|consensus
Probab=98.66 E-value=3.2e-08 Score=113.55 Aligned_cols=65 Identities=25% Similarity=0.402 Sum_probs=58.0
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEec
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITN 1107 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~ 1107 (1689)
+|...+.+|+.|+-++||||+..+-|+++|+--.||. ||- +.++-..+.|.||.| +.|..=+-|+
T Consensus 459 dR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN----yDM---------P~eIENYVHRIGRTG--Rsg~~GiATT 523 (610)
T KOG0341|consen 459 DRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN----YDM---------PEEIENYVHRIGRTG--RSGKTGIATT 523 (610)
T ss_pred HHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc----CCC---------hHHHHHHHHHhcccC--CCCCcceeee
Confidence 8999999999999999999999999999998766654 553 999999999999999 8888777665
No 175
>KOG0340|consensus
Probab=98.66 E-value=1.8e-07 Score=107.43 Aligned_cols=275 Identities=17% Similarity=0.242 Sum_probs=142.5
Q ss_pred eecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccccC------CceeecCCchhHHHHHH
Q psy14582 759 RLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKD------EIHLLHDERGPVLEALI 832 (1689)
Q Consensus 759 ~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiD------EiHll~d~rG~~lE~iv 832 (1689)
.|.||||||.+|.+|+++.+.+.+ .+.-+++++|||+|+.|+-.-+++= -+-.+.+....+..
T Consensus 50 ~AkTGsGKT~AFaLPil~rLsedP--------~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~q--- 118 (442)
T KOG0340|consen 50 CAKTGSGKTAAFALPILNRLSEDP--------YGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQ--- 118 (442)
T ss_pred ccccCCCcchhhhHHHHHhhccCC--------CcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhh---
Confidence 377999999999999999997753 4667999999999999952222110 01111112121111
Q ss_pred HHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHH
Q psy14582 833 ARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKV 912 (1689)
Q Consensus 833 ~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i 912 (1689)
...+..+..+|. ||. ..++..+..++....+.|. +..|..+++-... +..-....++.+
T Consensus 119 ------a~~L~~rPHvVv--atP---GRlad~l~sn~~~~~~~~~--------rlkflVlDEADrv--L~~~f~d~L~~i 177 (442)
T KOG0340|consen 119 ------AAILSDRPHVVV--ATP---GRLADHLSSNLGVCSWIFQ--------RLKFLVLDEADRV--LAGCFPDILEGI 177 (442)
T ss_pred ------hhhcccCCCeEe--cCc---cccccccccCCccchhhhh--------ceeeEEecchhhh--hccchhhHHhhh
Confidence 112334444444 332 2334444433222122111 2234444432211 110001112223
Q ss_pred HHHhCC-CeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCH
Q psy14582 913 MEHAGR-NQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTR 991 (1689)
Q Consensus 913 ~~~~~~-~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~ 991 (1689)
.+..+. .|.++|..|-..+.+ .+........ . .| +.+...+....+.|..|.-+ .+.
T Consensus 178 ~e~lP~~RQtLlfSATitd~i~---ql~~~~i~k~-~-a~-------------~~e~~~~vstvetL~q~yI~----~~~ 235 (442)
T KOG0340|consen 178 EECLPKPRQTLLFSATITDTIK---QLFGCPITKS-I-AF-------------ELEVIDGVSTVETLYQGYIL----VSI 235 (442)
T ss_pred hccCCCccceEEEEeehhhHHH---HhhcCCcccc-c-ce-------------EEeccCCCCchhhhhhheee----cch
Confidence 333443 589999998766533 2222111110 0 00 01111111122222222111 111
Q ss_pred HHHH----HHHHHHhc-C--CeEEEEEcc----hhccCCCCCCccee---------ehhhHHHHhhcccceEEEEccccc
Q psy14582 992 VDRT----LVEDLFAD-R--HIQVLVSTA----TLAWGVNLPAHTVV---------DRTLVEDLFADRHIQVLVSTATLA 1051 (1689)
Q Consensus 992 ~dR~----~ve~~F~~-g--~i~VLVaT~----vl~rGIDIp~V~~V---------~R~~~~~~f~~g~i~vLVaT~TLa 1051 (1689)
..++ .++..|++ + .+-+.|.|. .+++-++--.++++ +|...+.+|+++.+++||||+..+
T Consensus 236 ~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAs 315 (442)
T KOG0340|consen 236 DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVAS 315 (442)
T ss_pred hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhh
Confidence 1121 24455555 3 344444442 23332222233333 899999999999999999999999
Q ss_pred ccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1052 WGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1052 ~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
+|+|+|..-.||. ||- |.+=--.+.|.||.. +.|..
T Consensus 316 RGLDIP~V~LVvN----~di---------Pr~P~~yiHRvGRtA--RAGR~ 351 (442)
T KOG0340|consen 316 RGLDIPTVELVVN----HDI---------PRDPKDYIHRVGRTA--RAGRK 351 (442)
T ss_pred cCCCCCceeEEEe----cCC---------CCCHHHHHHhhcchh--cccCC
Confidence 9999998887765 332 899999999999976 65644
No 176
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.65 E-value=2.8e-07 Score=127.03 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=47.8
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCC
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRP 1094 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~ 1094 (1689)
++.-+|..+++.|++|.+++||||++|++|||+|+.. .-..--++.++...+.|+||+
T Consensus 311 LSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VD-------------lVIq~gsP~sVas~LQRiGRA 368 (1490)
T PRK09751 311 VSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVD-------------LVIQVATPLSVASGLQRIGRA 368 (1490)
T ss_pred CCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCC-------------EEEEeCCCCCHHHHHHHhCCC
Confidence 3333899999999999999999999999999999761 112234788999999999994
No 177
>KOG0332|consensus
Probab=98.61 E-value=3.7e-07 Score=105.40 Aligned_cols=78 Identities=27% Similarity=0.341 Sum_probs=65.3
Q ss_pred CCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1021 LPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1021 Ip~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
.++....+|..+++.||.|..+|||+|..+|+|+|.+..+|||. ||-... .-.-.||--.+.|.||.| +.|
T Consensus 361 ~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN----ydlP~~---~~~~pD~etYlHRiGRtG--RFG 431 (477)
T KOG0332|consen 361 HGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN----YDLPVK---YTGEPDYETYLHRIGRTG--RFG 431 (477)
T ss_pred eccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe----cCCccc---cCCCCCHHHHHHHhcccc--ccc
Confidence 46777889999999999999999999999999999999999975 775432 134578999999999999 888
Q ss_pred EEEEEec
Q psy14582 1101 EGVLITN 1107 (1689)
Q Consensus 1101 ~~iil~~ 1107 (1689)
+-=+-.+
T Consensus 432 kkG~a~n 438 (477)
T KOG0332|consen 432 KKGLAIN 438 (477)
T ss_pred ccceEEE
Confidence 7655543
No 178
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.60 E-value=1.1e-06 Score=115.25 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=52.5
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
.+--+|..+++.|..|.+++||||.++++|||+|.-..||. --.+.+.....-|+||+| +.|
T Consensus 258 l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~-------------~~~p~s~~~y~Q~~GRaG--R~G 319 (591)
T TIGR01389 258 LSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH-------------YDMPGNLESYYQEAGRAG--RDG 319 (591)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE-------------cCCCCCHHHHhhhhcccc--CCC
Confidence 33448999999999999999999999999999997776663 145678999999999998 766
No 179
>PRK01172 ski2-like helicase; Provisional
Probab=98.57 E-value=4.8e-08 Score=129.65 Aligned_cols=94 Identities=20% Similarity=0.213 Sum_probs=87.8
Q ss_pred hhhHHHHhhhhhhhccCCCchhHHHH------HHHHHH-------hhhhccCCCcccccCCCCCHHHHHhhhccCCCCHH
Q psy14582 1465 SEAIRLIQACVDVLSSNGWLSPAVAA------MEVAQM-------ITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVF 1531 (1689)
Q Consensus 1465 ~~~~rll~a~vdi~s~~gwL~~~l~~------m~l~Qm-------ivQa~w~~~s~LlQlPh~~~~~~~~~~~~~v~~v~ 1531 (1689)
+-++.+|++| +++.+||.+++.. |+++|| |+||+|+.++||+|||||+...+++|.+.+++|++
T Consensus 561 ~~~~g~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~a~~l~~~g~~~~~ 637 (674)
T PRK01172 561 GIAPGDVQAR---ASSADWISYSLARLSSIYKPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARRLYDAGFKTVD 637 (674)
T ss_pred CCChHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHHHHHHHHcCCCCHH
Confidence 4478899999 5889999989888 999999 99999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHhhcCCHHHHHHHHHHHhc
Q psy14582 1532 DIMELEDDDRLRLLQLSESQLADVARFCNR 1561 (1689)
Q Consensus 1532 dl~~~~~~~r~~ll~l~~~q~~~v~~~~~~ 1561 (1689)
|+++++++++.+++++++++.+.|...+..
T Consensus 638 di~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 667 (674)
T PRK01172 638 DIARSSPERIKKIYGFSDTLANAIVNRAMK 667 (674)
T ss_pred HHHhCCHHHHHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999999998877654
No 180
>KOG0328|consensus
Probab=98.55 E-value=6.6e-07 Score=99.71 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=57.7
Q ss_pred CCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1022 PAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1022 p~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
++...-+|+.++..||+|+.++|++|+..|+|+++|....||. ||- |..---.+.|.||.| +.|.
T Consensus 298 GDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN----YDL---------P~nre~YIHRIGRSG--RFGR 362 (400)
T KOG0328|consen 298 GDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN----YDL---------PNNRELYIHRIGRSG--RFGR 362 (400)
T ss_pred CCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe----cCC---------CccHHHHhhhhcccc--ccCC
Confidence 3444459999999999999999999999999999999988875 542 555556999999998 8886
Q ss_pred EEEEec
Q psy14582 1102 GVLITN 1107 (1689)
Q Consensus 1102 ~iil~~ 1107 (1689)
-=+..+
T Consensus 363 kGvain 368 (400)
T KOG0328|consen 363 KGVAIN 368 (400)
T ss_pred cceEEE
Confidence 655443
No 181
>KOG0334|consensus
Probab=98.55 E-value=9.5e-08 Score=123.36 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=57.9
Q ss_pred CCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1022 PAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1022 p~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
.+++.-.|..++..|+++.+++||||+.+|+|++.+.-.+||. ||. +.-|-+.+.|+||.| ..|.
T Consensus 645 Ggv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----yd~---------pnh~edyvhR~gRTg--ragr 709 (997)
T KOG0334|consen 645 GGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN----YDF---------PNHYEDYVHRVGRTG--RAGR 709 (997)
T ss_pred CCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE----ccc---------chhHHHHHHHhcccc--cCCc
Confidence 5666679999999999999999999999999999998888854 664 999999999999998 6664
Q ss_pred E
Q psy14582 1102 G 1102 (1689)
Q Consensus 1102 ~ 1102 (1689)
.
T Consensus 710 k 710 (997)
T KOG0334|consen 710 K 710 (997)
T ss_pred c
Confidence 4
No 182
>KOG0345|consensus
Probab=98.55 E-value=1.2e-06 Score=104.06 Aligned_cols=279 Identities=19% Similarity=0.211 Sum_probs=144.5
Q ss_pred ceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhcccc-CC------ceeecCCchhH
Q psy14582 755 PVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK-DE------IHLLHDERGPV 827 (1689)
Q Consensus 755 pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIi-DE------iHll~d~rG~~ 827 (1689)
.|.+.+|||||||++|++|++..+.+..... .+...-+|||+|||+|+.|+..++-- +| +.++.+ |..
T Consensus 45 DVvveavTGSGKTlAFllP~le~i~rr~~~~---~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vG--G~~ 119 (567)
T KOG0345|consen 45 DVVVEAVTGSGKTLAFLLPMLEIIYRREAKT---PPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVG--GRS 119 (567)
T ss_pred ceEEEcCCCCCchhhHHHHHHHHHHhhccCC---CccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEec--Ccc
Confidence 4677899999999999999999985532221 12246799999999999997443321 11 112222 233
Q ss_pred HHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHH
Q psy14582 828 LEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDI 907 (1689)
Q Consensus 828 lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~ 907 (1689)
++.=+.++.+ ....|+. +|.....| .++..... + ++|. | .+...++....-.+. -+.
T Consensus 120 v~~Di~~fke------e~~nIlV--gTPGRL~d---i~~~~~~~--l----~~rs--L--e~LVLDEADrLldmg--Fe~ 176 (567)
T KOG0345|consen 120 VEEDIKTFKE------EGPNILV--GTPGRLLD---ILQREAEK--L----SFRS--L--EILVLDEADRLLDMG--FEA 176 (567)
T ss_pred HHHHHHHHHH------hCCcEEE--eCchhHHH---HHhchhhh--c----cccc--c--ceEEecchHhHhccc--HHH
Confidence 3333333321 2233322 55554333 33322111 0 1222 2 222333322211111 111
Q ss_pred HHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEec
Q psy14582 908 VYEKVMEHAG-RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHH 986 (1689)
Q Consensus 908 ~~~~i~~~~~-~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hH 986 (1689)
-...|+...+ ..++=.|..|+.+... . |...+..+... .-....+ +..-+.+....+
T Consensus 177 ~~n~ILs~LPKQRRTGLFSATq~~~v~--d-L~raGLRNpv~-V~V~~k~------------------~~~tPS~L~~~Y 234 (567)
T KOG0345|consen 177 SVNTILSFLPKQRRTGLFSATQTQEVE--D-LARAGLRNPVR-VSVKEKS------------------KSATPSSLALEY 234 (567)
T ss_pred HHHHHHHhcccccccccccchhhHHHH--H-HHHhhccCcee-eeecccc------------------cccCchhhccee
Confidence 2234445555 3568888888765422 2 43333221110 0000000 000122333334
Q ss_pred cCCCHHHHHHHHHHHh----cCCeEEEEEcch--------hccC---CCC----CCcceeehhhHHHHhhcccceEEEEc
Q psy14582 987 AGMTRVDRTLVEDLFA----DRHIQVLVSTAT--------LAWG---VNL----PAHTVVDRTLVEDLFADRHIQVLVST 1047 (1689)
Q Consensus 987 agl~~~dR~~ve~~F~----~g~i~VLVaT~v--------l~rG---IDI----p~V~~V~R~~~~~~f~~g~i~vLVaT 1047 (1689)
-...+.++..+.-.|- .+++-|.+.|.. +.+- ..| +.+..-.|..++.+|+.-.-.+|+||
T Consensus 235 ~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T 314 (567)
T KOG0345|consen 235 LVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT 314 (567)
T ss_pred eEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEee
Confidence 4444444443333332 234555555532 1111 111 12222279999999999889999999
Q ss_pred ccccccCCCCCceEEEeceeeecCCCCcce-e-cCHHHHHHHhcccCCCCCCCcc
Q psy14582 1048 ATLAWGVNLPAHTVIIKGTQIYNPEKGRWV-E-LGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1048 ~TLa~GvNLPa~~VII~gt~~yd~~~~~~~-~-~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
+.+|+|+|+|.- -|+ . =+|.++--.++|+||.+ +.|
T Consensus 315 DVaARGlDip~i---------------D~VvQ~DpP~~~~~FvHR~GRTa--R~g 352 (567)
T KOG0345|consen 315 DVAARGLDIPGI---------------DLVVQFDPPKDPSSFVHRCGRTA--RAG 352 (567)
T ss_pred hhhhccCCCCCc---------------eEEEecCCCCChhHHHhhcchhh--hcc
Confidence 999999999965 232 2 37888999999999987 555
No 183
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.54 E-value=3.4e-07 Score=95.06 Aligned_cols=50 Identities=34% Similarity=0.553 Sum_probs=41.8
Q ss_pred CcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 498 ENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
+++++++|||+|||.+++.++......+ ...+++|++|++.|+.|..+.+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---------~~~~~lv~~p~~~l~~~~~~~~ 50 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---------KGGQVLVLAPTRELANQVAERL 50 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---------cCCCEEEEcCcHHHHHHHHHHH
Confidence 5789999999999999999998876542 2358999999999999987544
No 184
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.48 E-value=2.1e-06 Score=111.86 Aligned_cols=291 Identities=19% Similarity=0.177 Sum_probs=151.1
Q ss_pred cccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhcccc------CCcee
Q psy14582 746 RWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK------DEIHL 819 (1689)
Q Consensus 746 ~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIi------DEiHl 819 (1689)
.|-......++.+.||||+|||.+++||++..+.+.. .....++..+|||+|.|||.+++.+-+-. .++..
T Consensus 30 a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~v 106 (814)
T COG1201 30 AIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG---KGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAV 106 (814)
T ss_pred HHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc---CCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccce
Confidence 3555556778899999999999999999999987652 11223568999999999999985221110 12222
Q ss_pred e-cCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEEEEeechhhHH
Q psy14582 820 L-HDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKAL 898 (1689)
Q Consensus 820 l-~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~ 898 (1689)
- +|+.. .--+| +...+..|+..+ .+.++-.|... .+|..--...++.+++-+..
T Consensus 107 RhGDT~~----~er~r------~~~~PPdILiTT-----PEsL~lll~~~----------~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 107 RHGDTPQ----SEKQK------MLKNPPHILITT-----PESLAILLNSP----------KFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred ecCCCCh----HHhhh------ccCCCCcEEEeC-----hhHHHHHhcCH----------HHHHHhcCCcEEEeehhhhh
Confidence 2 22221 11111 223334444432 13344333321 11111111223333333221
Q ss_pred H---HHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhh
Q psy14582 899 K---RFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELR 975 (1689)
Q Consensus 899 ~---~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~ 975 (1689)
. |- .......+.+....+.-|-|--..|...-..+|++|......+..... .. .+.-.++
T Consensus 162 ~~sKRG-~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~--------------~~--~k~~~i~ 224 (814)
T COG1201 162 AESKRG-VQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDV--------------SA--AKKLEIK 224 (814)
T ss_pred hccccc-hhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEc--------------cc--CCcceEE
Confidence 1 10 001122233334444457777788888888888888653211110000 00 0000000
Q ss_pred cccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhc-----------cCCCC-----CCcceeehhhHHHHhhcc
Q psy14582 976 DLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLA-----------WGVNL-----PAHTVVDRTLVEDLFADR 1039 (1689)
Q Consensus 976 ~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~-----------rGIDI-----p~V~~V~R~~~~~~f~~g 1039 (1689)
-..+. ...-..+-....+-.....+.+.+..+||.||.-. .+.+. +.++-=+|..++++|+.|
T Consensus 225 v~~p~-~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G 303 (814)
T COG1201 225 VISPV-EDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG 303 (814)
T ss_pred EEecC-CccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC
Confidence 00000 00000111222222223333344457777776311 22111 222233899999999999
Q ss_pred cceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCC
Q psy14582 1040 HIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1040 ~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g 1095 (1689)
..+++|||++|.-|+|+-.- .--..--||..+--++-|.||.|
T Consensus 304 ~lravV~TSSLELGIDiG~v-------------dlVIq~~SP~sV~r~lQRiGRsg 346 (814)
T COG1201 304 ELKAVVATSSLELGIDIGDI-------------DLVIQLGSPKSVNRFLQRIGRAG 346 (814)
T ss_pred CceEEEEccchhhccccCCc-------------eEEEEeCCcHHHHHHhHhccccc
Confidence 99999999999999986533 01112358999999999999988
No 185
>KOG0347|consensus
Probab=98.37 E-value=2.5e-06 Score=102.84 Aligned_cols=65 Identities=22% Similarity=0.337 Sum_probs=49.9
Q ss_pred CCCCCCccee------ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhccc
Q psy14582 1018 GVNLPAHTVV------DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRA 1091 (1689)
Q Consensus 1018 GIDIp~V~~V------~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRA 1091 (1689)
-+|||...+. +|-..+.+|+.-.--+|+||+.+|+|+|+|....||. | -=|...--.+.|.
T Consensus 485 ~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH----Y---------qVPrtseiYVHRS 551 (731)
T KOG0347|consen 485 NLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH----Y---------QVPRTSEIYVHRS 551 (731)
T ss_pred hcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE----e---------ecCCccceeEecc
Confidence 4677766655 8899999999999999999999999999998877763 1 1222333467888
Q ss_pred CCCC
Q psy14582 1092 GRPQ 1095 (1689)
Q Consensus 1092 GR~g 1095 (1689)
||..
T Consensus 552 GRTA 555 (731)
T KOG0347|consen 552 GRTA 555 (731)
T ss_pred cccc
Confidence 8854
No 186
>KOG4434|consensus
Probab=98.34 E-value=2.3e-06 Score=97.75 Aligned_cols=102 Identities=21% Similarity=0.323 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhcC-C-CchhhccCChhhhhhhhcCChh--hHHHHHHHHhC
Q psy14582 1341 QLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKN-F-PWERLYDLGPNEIGELIRVPKL--GKTIHKYVHQF 1416 (1689)
Q Consensus 1341 ~~a~~~l~L~k~i~~~~W~~~~pLrQ~~~i~~~~i~~~~~~~-~-~~~~l~dl~~~el~~ll~~~~~--g~~i~~~~~~~ 1416 (1689)
....++|.|+.|+.|++|...|||.|+|||.++.++.+.++. + +..++..|.++++..|+++... -..+...+..+
T Consensus 130 et~eNcmKlspM~vQgLwqfkSPLLQLPHitednL~~~~KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~m 209 (520)
T KOG4434|consen 130 ETFENCMKLSPMFVQGLWQFKSPLLQLPHITEDNLQHLRKKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMM 209 (520)
T ss_pred HHHHHHHhccHHHHHHHHHhcChhhcCCccchHHHHHHhhhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccC
Confidence 445689999999999999999999999999999999998765 5 8999999999999999986543 45688999999
Q ss_pred CcceEEEEeec--------cc-cceEEEEEeecCC
Q psy14582 1417 PKLELATHIQP--------IT-RSTLRVELTISPD 1442 (1689)
Q Consensus 1417 P~l~l~~~~~p--------i~-~~~~~~~~~i~~~ 1442 (1689)
|++.++...+- +| ++++.|.|++++.
T Consensus 210 P~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~ 244 (520)
T KOG4434|consen 210 PRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRS 244 (520)
T ss_pred cceEEEeeEEEecCCcccceeeeeEEEEEEEEEec
Confidence 99999876543 56 7778999998875
No 187
>KOG0336|consensus
Probab=98.30 E-value=7.7e-06 Score=95.22 Aligned_cols=285 Identities=17% Similarity=0.219 Sum_probs=148.5
Q ss_pred eecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccccCC-----
Q psy14582 742 IVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDE----- 816 (1689)
Q Consensus 742 i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDE----- 816 (1689)
|+|..|--.-....++-.|.||+|||+++++|-+-++..+..... +..++.+|+++|+|+|+.|+ ..-+.-+
T Consensus 246 IqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~--qr~~p~~lvl~ptreLalqi-e~e~~kysyng~ 322 (629)
T KOG0336|consen 246 IQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE--QRNGPGVLVLTPTRELALQI-EGEVKKYSYNGL 322 (629)
T ss_pred chhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhh--ccCCCceEEEeccHHHHHHH-HhHHhHhhhcCc
Confidence 678899777677777777999999999999997766644332222 44578899999999999994 2222111
Q ss_pred --ceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccce-EEEEEee
Q psy14582 817 --IHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVAL-EQQYIGV 892 (1689)
Q Consensus 817 --iHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL-~~~~~~~ 892 (1689)
+-..+. .|...++.+ ...+-++. ||.....|+ ...+ + +.| ...|..+
T Consensus 323 ksvc~ygggnR~eqie~l-----------krgveiii--atPgrlndL---~~~n----~---------i~l~siTYlVl 373 (629)
T KOG0336|consen 323 KSVCVYGGGNRNEQIEDL-----------KRGVEIII--ATPGRLNDL---QMDN----V---------INLASITYLVL 373 (629)
T ss_pred ceEEEecCCCchhHHHHH-----------hcCceEEe--eCCchHhhh---hhcC----e---------eeeeeeEEEEe
Confidence 112222 444444332 22333333 454422222 1111 1 111 1233334
Q ss_pred chhhHHHHHHHh-hHHHH-HHHHHHhCCCeEEEEeCCh-HHHHHHHHHHHHhhhhc--cccchhhhcCchhHHHHHHhhh
Q psy14582 893 TEKKALKRFQVM-NDIVY-EKVMEHAGRNQLLVFVHSR-KETGKTARAIRDMCLEK--DTLGQFLREGSASMEVLRTEAD 967 (1689)
Q Consensus 893 ~~~~~~~~~~~m-~~~~~-~~i~~~~~~~~vLVFv~sr-k~~~~~a~~L~~~~~~~--~~l~~fl~~~~~~~e~l~~~~~ 967 (1689)
++... +..| .++.. ..++...+..+++.-..|- ..+.++|........-. +.+.
T Consensus 374 DEADr---MLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLd------------------ 432 (629)
T KOG0336|consen 374 DEADR---MLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLD------------------ 432 (629)
T ss_pred cchhh---hhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccc------------------
Confidence 43221 1111 11111 1222333445555444442 23444444332211000 0000
Q ss_pred hccchhhhcccCCceeEeccCCCHHHHHHHHHHHhc-----CCeEEEEEcchhc---------cCCCC----CCcceeeh
Q psy14582 968 QVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFAD-----RHIQVLVSTATLA---------WGVNL----PAHTVVDR 1029 (1689)
Q Consensus 968 ~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~-----g~i~VLVaT~vl~---------rGIDI----p~V~~V~R 1029 (1689)
.+.- ..+...|-+-| ..+...+.+.|-. .++-+.|+..+.+ .||.. ++-..-+|
T Consensus 433 L~a~----~sVkQ~i~v~~----d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~Dr 504 (629)
T KOG0336|consen 433 LVAV----KSVKQNIIVTT----DSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDR 504 (629)
T ss_pred eeee----eeeeeeEEecc----cHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhH
Confidence 0000 00111111111 1222233333322 2333344333332 23332 22233388
Q ss_pred hhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1030 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1030 ~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
+..+..|++|.+++||+|+..++|+++|.-+.|+. ||. +.++-..+.|.||.| +.|.-
T Consensus 505 E~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N----yDF---------P~nIeeYVHRvGrtG--RaGr~ 562 (629)
T KOG0336|consen 505 EMALEDFKSGEVRILVATDLASRGLDVPDITHVYN----YDF---------PRNIEEYVHRVGRTG--RAGRT 562 (629)
T ss_pred HHHHHhhhcCceEEEEEechhhcCCCchhcceeec----cCC---------CccHHHHHHHhcccc--cCCCC
Confidence 99999999999999999999999999999877653 554 999999999999998 76643
No 188
>KOG1123|consensus
Probab=98.29 E-value=7.8e-06 Score=97.31 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHhcCC--cEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 478 DFKTLNRIQSRLCKSALESDE--NLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~--nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
.-+.++|+|.+++...+.+|+ .-|+..|.|+|||++-+-++-. -..++|+++..---+.|..
T Consensus 299 Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t--------------ikK~clvLcts~VSVeQWk 362 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT--------------IKKSCLVLCTSAVSVEQWK 362 (776)
T ss_pred cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee--------------ecccEEEEecCccCHHHHH
Confidence 346789999999999987764 6799999999999986544311 1236888777666666544
No 189
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.27 E-value=1.6e-05 Score=105.35 Aligned_cols=57 Identities=26% Similarity=0.327 Sum_probs=45.2
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHH--HHHHHhcccCCCCCCCcc
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGAL--DVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~--d~lQm~GRAGR~g~d~~G 1100 (1689)
+|..+++.|++|++++||||+.+++|||+|..+ ..+-+.+. ..-|..-|.||.| +.|
T Consensus 519 eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~--------------~VIi~~~~r~gls~lhQ~~GRvG--R~g 577 (681)
T PRK10917 519 EKDAVMAAFKAGEIDILVATTVIEVGVDVPNAT--------------VMVIENAERFGLAQLHQLRGRVG--RGA 577 (681)
T ss_pred HHHHHHHHHHcCCCCEEEECcceeeCcccCCCc--------------EEEEeCCCCCCHHHHHHHhhccc--CCC
Confidence 899999999999999999999999999999761 22233332 4567777999998 655
No 190
>PRK02362 ski2-like helicase; Provisional
Probab=98.26 E-value=1e-06 Score=117.98 Aligned_cols=94 Identities=20% Similarity=0.137 Sum_probs=85.4
Q ss_pred hhHHHHhhhhhhhccCCCchhHHHHHHHHHHhhhhccCCCcccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhh
Q psy14582 1466 EAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLL 1545 (1689)
Q Consensus 1466 ~~~rll~a~vdi~s~~gwL~~~l~~m~l~QmivQa~w~~~s~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll 1545 (1689)
++.+|++||+|++ +.+|++++..+|+|+||+.||+|+..+||+|||||+...+++|.+.++++++||+++++++..++
T Consensus 613 ~~~~l~~a~~~i~-~~~~~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~gi~s~~dl~~~~~~~l~~~- 690 (737)
T PRK02362 613 TAEWLLHAAERLA-SELDLDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAGIESRADLRAADKSVVLAI- 690 (737)
T ss_pred HHHHHHHHHHHHH-HHhCccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHH-
Confidence 4889999999995 45788889999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCHHHHHHHHHHHhcC
Q psy14582 1546 QLSESQLADVARFCNRY 1562 (1689)
Q Consensus 1546 ~l~~~q~~~v~~~~~~~ 1562 (1689)
+.++-.+.|...+..+
T Consensus 691 -~g~~~~~~i~~~~~~~ 706 (737)
T PRK02362 691 -LGEKIAENILEQAGRR 706 (737)
T ss_pred -HCHHHHHHHHHHhCcc
Confidence 6777777888877755
No 191
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.25 E-value=1.2e-05 Score=105.87 Aligned_cols=58 Identities=24% Similarity=0.361 Sum_probs=46.1
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCH--HHHHHHhcccCCCCCCCccE
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGA--LDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~--~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
+|..+++.|+.|++++||||+++++|||+|..+ ..+-+.+ ...-|..-|+||.| +.|.
T Consensus 496 eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~--------------~VIi~~~~r~gls~lhQ~~GRvG--R~g~ 555 (630)
T TIGR00643 496 EKEAVMEEFREGEVDILVATTVIEVGVDVPNAT--------------VMVIEDAERFGLSQLHQLRGRVG--RGDH 555 (630)
T ss_pred HHHHHHHHHHcCCCCEEEECceeecCcccCCCc--------------EEEEeCCCcCCHHHHHHHhhhcc--cCCC
Confidence 899999999999999999999999999999771 2222333 34677777999998 6553
No 192
>KOG4284|consensus
Probab=98.25 E-value=3e-06 Score=103.40 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=63.2
Q ss_pred chhccCCCCC----CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHh
Q psy14582 1013 ATLAWGVNLP----AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQML 1088 (1689)
Q Consensus 1013 ~vl~rGIDIp----~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~ 1088 (1689)
-+-+-|+|.. ++..-+|-.+...+|.-.+++||+|+..|+|||-|..+.||. -| .+.|..-.+
T Consensus 291 ~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN----iD---------~p~d~eTY~ 357 (980)
T KOG4284|consen 291 HLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN----ID---------APADEETYF 357 (980)
T ss_pred HhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe----cC---------CCcchHHHH
Confidence 3445677763 333448999999999999999999999999999997777764 22 399999999
Q ss_pred cccCCCCCCCccEEEEEec
Q psy14582 1089 GRAGRPQYDTKGEGVLITN 1107 (1689)
Q Consensus 1089 GRAGR~g~d~~G~~iil~~ 1107 (1689)
.|.||+| +.|.-=+-++
T Consensus 358 HRIGRAg--RFG~~G~aVT 374 (980)
T KOG4284|consen 358 HRIGRAG--RFGAHGAAVT 374 (980)
T ss_pred HHhhhcc--cccccceeEE
Confidence 9999999 8775544444
No 193
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.23 E-value=2.5e-05 Score=105.29 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=46.8
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcce--ecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWV--ELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~--~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
+|+.+++.|++|++++||||..+++|+|+|.-+ ..+ +.+....-|...|.||.| +.|.
T Consensus 700 eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~--------------~VIi~~a~~~gls~l~Qr~GRvG--R~g~ 759 (926)
T TIGR00580 700 ELEEVMLEFYKGEFQVLVCTTIIETGIDIPNAN--------------TIIIERADKFGLAQLYQLRGRVG--RSKK 759 (926)
T ss_pred HHHHHHHHHHcCCCCEEEECChhhcccccccCC--------------EEEEecCCCCCHHHHHHHhcCCC--CCCC
Confidence 899999999999999999999999999999661 112 233345679999999998 6654
No 194
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.22 E-value=3.2e-05 Score=95.19 Aligned_cols=46 Identities=30% Similarity=0.478 Sum_probs=38.3
Q ss_pred eeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhh
Q psy14582 756 VSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 810 (1689)
Q Consensus 756 v~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~ 810 (1689)
+.+.+|||+|||.+++++++..+... ...+++|++|+++|+.|+.+
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~---------~~~~ii~v~P~~~L~~q~~~ 47 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQ---------KADRVIIALPTRATINAMYR 47 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhC---------CCCeEEEEeehHHHHHHHHH
Confidence 56789999999999999998876431 25699999999999999644
No 195
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.21 E-value=0.00027 Score=92.96 Aligned_cols=174 Identities=17% Similarity=0.215 Sum_probs=95.5
Q ss_pred eEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccceEEE--EEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEE
Q psy14582 847 RLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVALEQQ--YIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLV 923 (1689)
Q Consensus 847 riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~--~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLV 923 (1689)
++-|||.|... ..++.+..+.. + ..-+..||+--.-. .+..+.. .++.+..+.+ ...+..+.||||
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~----V-v~IPTnrP~~R~D~~D~vy~t~~---eK~~Aii~ei---~~~~~~GrPVLV 633 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLD----V-VVIPTNRPIARKDKEDLVYKTKR---EKYNAVIEEI---TELSEAGRPVLV 633 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC----E-EECCCCCCcceecCCCeEecCHH---HHHHHHHHHH---HHHHHCCCCEEE
Confidence 57789999863 34444433332 2 33455666532110 1111111 1122222222 223456889999
Q ss_pred EeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhc
Q psy14582 924 FVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFAD 1003 (1689)
Q Consensus 924 Fv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~ 1003 (1689)
-+.|....+.+++.|...+.....+ +|.....+-..|-++=+.
T Consensus 634 GT~SVe~SE~lS~~L~~~gI~H~VL-------------------------------------NAK~h~~EAeIVA~AG~~ 676 (1112)
T PRK12901 634 GTTSVEISELLSRMLKMRKIPHNVL-------------------------------------NAKLHQKEAEIVAEAGQP 676 (1112)
T ss_pred EeCcHHHHHHHHHHHHHcCCcHHHh-------------------------------------hccchhhHHHHHHhcCCC
Confidence 9999999999999998755433222 232223344444444333
Q ss_pred CCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHH
Q psy14582 1004 RHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALD 1083 (1689)
Q Consensus 1004 g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d 1083 (1689)
-.|-|||++++||-||.=-.-| -..|-. . |-||...+ |..-
T Consensus 677 --GaVTIATNMAGRGTDIkLg~~V--------~e~GGL-------------------~-VIgTerhe---------SrRI 717 (1112)
T PRK12901 677 --GTVTIATNMAGRGTDIKLSPEV--------KAAGGL-------------------A-IIGTERHE---------SRRV 717 (1112)
T ss_pred --CcEEEeccCcCCCcCcccchhh--------HHcCCC-------------------E-EEEccCCC---------cHHH
Confidence 4677899999999999511111 000111 1 11343322 3444
Q ss_pred HHHHhcccCCCCCCCccEEEEEecCC
Q psy14582 1084 VLQMLGRAGRPQYDTKGEGVLITNHS 1109 (1689)
Q Consensus 1084 ~lQm~GRAGR~g~d~~G~~iil~~~~ 1109 (1689)
-.|-.|||||-| .+|.+-.+.+-.
T Consensus 718 D~QLrGRaGRQG--DPGsS~f~lSLE 741 (1112)
T PRK12901 718 DRQLRGRAGRQG--DPGSSQFYVSLE 741 (1112)
T ss_pred HHHHhcccccCC--CCCcceEEEEcc
Confidence 569999999999 788887777654
No 196
>KOG0348|consensus
Probab=98.17 E-value=1e-05 Score=97.35 Aligned_cols=63 Identities=29% Similarity=0.367 Sum_probs=50.8
Q ss_pred CCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceec-CHHHHHHHhcccCCCCCCCcc
Q psy14582 1022 PAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVEL-GALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1022 p~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~-s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
+++..-+|+.+.+.|+...--||.||+..|+|+|||.. +-.+.| .+..---.+.|.||.. +.|
T Consensus 479 Gsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V--------------~~vVQYd~P~s~adylHRvGRTA--RaG 542 (708)
T KOG0348|consen 479 GSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHV--------------GLVVQYDPPFSTADYLHRVGRTA--RAG 542 (708)
T ss_pred CchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCc--------------CeEEEeCCCCCHHHHHHHhhhhh--hcc
Confidence 34444589999999999998899999999999999966 333455 5677888999999975 545
No 197
>PRK00254 ski2-like helicase; Provisional
Probab=98.16 E-value=2.3e-06 Score=114.48 Aligned_cols=95 Identities=11% Similarity=0.141 Sum_probs=86.0
Q ss_pred hhhHHHHhhhhhhhc----cCCCchhHHHHHHHHHHhhhhccCCCcccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHH
Q psy14582 1465 SEAIRLIQACVDVLS----SNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDD 1540 (1689)
Q Consensus 1465 ~~~~rll~a~vdi~s----~~gwL~~~l~~m~l~QmivQa~w~~~s~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~ 1540 (1689)
..+.+|++||+||++ +++|++ ++. +|+|||+||+|+.+++|.|||||+...+++|-+++++|+++++++++++
T Consensus 603 ~~~~~l~~a~~~i~~~~~~~~~~~~-~l~--~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g~~s~~~i~~a~~~e 679 (720)
T PRK00254 603 ELADWLMYSLIELYKLFEPKQEVLD-YLE--TLHLRVKHGVREELLELMRLPMIGRKRARALYNAGFRSIEDIVNAKPSE 679 (720)
T ss_pred HHHHHHHHHHHHHHHHhCcchhHHH-HHH--HHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHccCCCHHHHHhCCHHH
Confidence 348999999999999 566775 554 8999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHhcC
Q psy14582 1541 RLRLLQLSESQLADVARFCNRY 1562 (1689)
Q Consensus 1541 r~~ll~l~~~q~~~v~~~~~~~ 1562 (1689)
-.++.+++.+-.+.|.++++.+
T Consensus 680 l~~~~gi~~~~a~~i~~~~~~~ 701 (720)
T PRK00254 680 LLKVEGIGAKIVEGIFKHLGVE 701 (720)
T ss_pred HhcCCCCCHHHHHHHHHHhccc
Confidence 9988889999999999998854
No 198
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.13 E-value=1.5e-05 Score=106.62 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=51.8
Q ss_pred eeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 739 FLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 739 ~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
+.+=|.+.|-......+|++..|||||||.+|++|++..+.+.. ..++||+.||+||++++
T Consensus 71 lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~---------~a~AL~lYPtnALa~DQ 131 (851)
T COG1205 71 LYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP---------SARALLLYPTNALANDQ 131 (851)
T ss_pred ccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc---------CccEEEEechhhhHhhH
Confidence 34446677877788899999999999999999999999987642 34899999999999985
No 199
>COG4889 Predicted helicase [General function prediction only]
Probab=98.12 E-value=2.4e-05 Score=98.23 Aligned_cols=65 Identities=22% Similarity=0.270 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHhc---CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhh
Q psy14582 478 DFKTLNRIQSRLCKSALES---DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 554 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~---g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~ 554 (1689)
.-++|+|+|+.|+..+++- +..-=+....|+|||+.++--+ ..+.. .+++|++|..+|-.|..+
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkis-Eala~------------~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKIS-EALAA------------ARILFLVPSISLLSQTLR 224 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHH-HHHhh------------hheEeecchHHHHHHHHH
Confidence 4578999999999988731 1111122334899999986443 44432 489999999999998764
Q ss_pred c
Q psy14582 555 N 555 (1689)
Q Consensus 555 ~ 555 (1689)
+
T Consensus 225 e 225 (1518)
T COG4889 225 E 225 (1518)
T ss_pred H
Confidence 3
No 200
>KOG0327|consensus
Probab=98.04 E-value=9.8e-06 Score=95.02 Aligned_cols=65 Identities=20% Similarity=0.324 Sum_probs=54.9
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
+....+|+.+++.|++|..++||.|..+|+|+++-....||. ||. |..-...+.|+||.| ..|.-
T Consensus 296 d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin----ydl---------P~~~~~yihR~gr~g--r~grk 360 (397)
T KOG0327|consen 296 DMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN----YDL---------PARKENYIHRIGRAG--RFGRK 360 (397)
T ss_pred ccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee----ecc---------ccchhhhhhhccccc--ccCCC
Confidence 444558999999999999999999999999999998766654 553 999999999999998 65543
No 201
>KOG0346|consensus
Probab=98.04 E-value=2.3e-05 Score=92.58 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=43.9
Q ss_pred ceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhcc
Q psy14582 755 PVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 812 (1689)
Q Consensus 755 pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~li 812 (1689)
.++.+|.||||||.+|++|+++.+....... ....++.+++++|||+|++|...++
T Consensus 58 DvvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa~iLvPTkEL~qQvy~vi 113 (569)
T KOG0346|consen 58 DVVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSAVILVPTKELAQQVYKVI 113 (569)
T ss_pred ceeeeeccCCCchHHHHHHHHHHHHHhhhcc--cccccceeEEEechHHHHHHHHHHH
Confidence 5667799999999999999999986542221 2445789999999999999965443
No 202
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.03 E-value=8.2e-05 Score=102.59 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=47.1
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCccee-cCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVE-LGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~-~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
+|..+++.|++|++++||||+.+++|+|+|.-. .-.+. -..-++-|...|+||.| +.|..
T Consensus 849 eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~-------------~VIi~~ad~fglaq~~Qr~GRvG--R~g~~ 909 (1147)
T PRK10689 849 ELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN-------------TIIIERADHFGLAQLHQLRGRVG--RSHHQ 909 (1147)
T ss_pred HHHHHHHHHHhcCCCEEEECchhhcccccccCC-------------EEEEecCCCCCHHHHHHHhhccC--CCCCc
Confidence 789999999999999999999999999999662 11111 12336789999999998 66543
No 203
>PRK09401 reverse gyrase; Reviewed
Probab=97.97 E-value=0.00011 Score=101.72 Aligned_cols=69 Identities=20% Similarity=0.271 Sum_probs=53.1
Q ss_pred CceeEeccCCCHHHHHHHHHHHhcCCeEEEEE----cchhccCCCCCC-cceeehhhHHHHhhcccceEEEEcccccccC
Q psy14582 980 YGFAIHHAGMTRVDRTLVEDLFADRHIQVLVS----TATLAWGVNLPA-HTVVDRTLVEDLFADRHIQVLVSTATLAWGV 1054 (1689)
Q Consensus 980 ~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVa----T~vl~rGIDIp~-V~~V~R~~~~~~f~~g~i~vLVaT~TLa~Gv 1054 (1689)
..++..||+| .| .++.|++|+++|||| |++++||||+|+ |++| ..+
T Consensus 356 i~v~~~hg~l---~~--~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryV------------------------I~y 406 (1176)
T PRK09401 356 INAELAISGF---ER--KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYA------------------------IFY 406 (1176)
T ss_pred CcEEEEeCcH---HH--HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEE------------------------EEe
Confidence 3457789999 23 249999999999999 699999999999 8998 678
Q ss_pred CCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccC
Q psy14582 1055 NLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAG 1092 (1689)
Q Consensus 1055 NLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAG 1092 (1689)
++|.+.+=+. -...+.|++||+-
T Consensus 407 ~vP~~~~~~~---------------~~~~~~~~~~r~~ 429 (1176)
T PRK09401 407 GVPKFKFSLE---------------EELAPPFLLLRLL 429 (1176)
T ss_pred CCCCEEEecc---------------ccccCHHHHHHHH
Confidence 8887642221 1345779999975
No 204
>KOG0339|consensus
Probab=97.89 E-value=3.2e-05 Score=92.53 Aligned_cols=66 Identities=26% Similarity=0.297 Sum_probs=50.7
Q ss_pred CCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCH-HHHHHHhcccCCCCCCCcc
Q psy14582 1022 PAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGA-LDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1022 p~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~-~d~lQm~GRAGR~g~d~~G 1100 (1689)
.+.+.-+|..++.+|+.+.+.|||+|...|+|.++|.- ...+.|.. .|+---..|.||.| +.|
T Consensus 500 gdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~i--------------kTVvnyD~ardIdththrigrtg--Rag 563 (731)
T KOG0339|consen 500 GDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSI--------------KTVVNYDFARDIDTHTHRIGRTG--RAG 563 (731)
T ss_pred CchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcccc--------------ceeecccccchhHHHHHHhhhcc--ccc
Confidence 44455589999999999999999999999999999933 23345543 45666788999988 666
Q ss_pred EEE
Q psy14582 1101 EGV 1103 (1689)
Q Consensus 1101 ~~i 1103 (1689)
.-=
T Consensus 564 ~kG 566 (731)
T KOG0339|consen 564 EKG 566 (731)
T ss_pred ccc
Confidence 443
No 205
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.89 E-value=0.00012 Score=97.73 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=34.5
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEe
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIK 1064 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~ 1064 (1689)
+|..+++.|++|..++||||..++.|+++|...+||.
T Consensus 250 eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 250 AQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred HHHHHHhhcccCCeEEEEecchHhhcccccCceEEEE
Confidence 7889999999999999999999999999999888775
No 206
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.88 E-value=1.8e-05 Score=102.02 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=47.1
Q ss_pred HHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 493 ALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 493 al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
++..+..+++.||||+|||++|++|++..+... .+.++||++||++|+.|++..+.
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---------~~~rvlIstpT~~Lq~Ql~~~l~ 67 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---------PDQKIAIAVPTLALMGQLWSELE 67 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---------cCceEEEECCcHHHHHHHHHHHH
Confidence 455788999999999999999999999877532 23589999999999999986543
No 207
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.82 E-value=3.3e-05 Score=91.92 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=57.2
Q ss_pred CCCCCCHHHHHHHHH---HHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhh
Q psy14582 478 DFKTLNRIQSRLCKS---ALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 554 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~---al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~ 554 (1689)
.|+ |+|.|.+.+.. ++.+|.++|+.||||+|||+++++|++..+...... ..+.+++|.++|.++..|...
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~ 79 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLE 79 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHH
Confidence 344 59999995544 445799999999999999999999999876643210 023589999999999888776
Q ss_pred cccc
Q psy14582 555 NFGK 558 (1689)
Q Consensus 555 ~f~k 558 (1689)
.+++
T Consensus 80 ~l~~ 83 (289)
T smart00489 80 ELRK 83 (289)
T ss_pred HHHh
Confidence 5543
No 208
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.82 E-value=3.3e-05 Score=91.92 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=57.2
Q ss_pred CCCCCCHHHHHHHHH---HHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhh
Q psy14582 478 DFKTLNRIQSRLCKS---ALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 554 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~---al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~ 554 (1689)
.|+ |+|.|.+.+.. ++.+|.++|+.||||+|||+++++|++..+...... ..+.+++|.++|.++..|...
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~ 79 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLE 79 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHH
Confidence 344 59999995544 445799999999999999999999999876643210 023589999999999888776
Q ss_pred cccc
Q psy14582 555 NFGK 558 (1689)
Q Consensus 555 ~f~k 558 (1689)
.+++
T Consensus 80 ~l~~ 83 (289)
T smart00488 80 ELRK 83 (289)
T ss_pred HHHh
Confidence 5543
No 209
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.81 E-value=0.00014 Score=97.43 Aligned_cols=37 Identities=5% Similarity=0.058 Sum_probs=34.1
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEe
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIK 1064 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~ 1064 (1689)
+|..+++.|++|..++||||..++.|+++|.-++||.
T Consensus 253 eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 253 EQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred HHHHHhccccCCCeEEEEecchHHhcccccCceEEEE
Confidence 7888999999999999999999999999998888774
No 210
>PRK14701 reverse gyrase; Provisional
Probab=97.75 E-value=0.00033 Score=99.14 Aligned_cols=58 Identities=26% Similarity=0.261 Sum_probs=43.6
Q ss_pred ehhhHHHHhhcccceEEEEcc----cccccCCCCC--ceEEEeceeeecCCCCcceecCHHHHHHHhcccCC
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTA----TLAWGVNLPA--HTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGR 1093 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~----TLa~GvNLPa--~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR 1093 (1689)
.|..+++.|++|++++||||+ .+++|+|+|. +-|| +||.++.+ +++..|.|-..+..|
T Consensus 366 ~R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi-----~~~~Pk~~---~~~e~~~~~~~~~~~ 429 (1638)
T PRK14701 366 KNKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAV-----FYGVPKFR---FRVDLEDPTIYRILG 429 (1638)
T ss_pred hHHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEE-----EeCCCCCC---cchhhcccchhhhhc
Confidence 589999999999999999995 8999999997 3344 46665543 356666676655544
No 211
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.00058 Score=86.66 Aligned_cols=269 Identities=21% Similarity=0.290 Sum_probs=143.5
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccccCC--ceeecC-----Cchh
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDE--IHLLHD-----ERGP 826 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDE--iHll~d-----~rG~ 826 (1689)
-.++.-+|||+||+++|.+|.+-. ..-.|+|+|+.+|.++.|+-+.--- +-.++. ++..
T Consensus 33 ~d~lvvmPTGgGKSlCyQiPAll~--------------~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~ 98 (590)
T COG0514 33 KDTLVVMPTGGGKSLCYQIPALLL--------------EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQ 98 (590)
T ss_pred CcEEEEccCCCCcchHhhhHHHhc--------------CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHH
Confidence 346667999999999999987653 2368999999999988765544322 112221 1222
Q ss_pred HHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEE---------ecCCCcccceEEEEEeechhhH
Q psy14582 827 VLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFY---------FDNSFRPVALEQQYIGVTEKKA 897 (1689)
Q Consensus 827 ~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~---------f~~~~RpvpL~~~~~~~~~~~~ 897 (1689)
++..+ ....++++.+|--.-+...+.+.|..-+ ...+. ++.+||| .
T Consensus 99 v~~~l----------~~g~~klLyisPErl~~~~f~~~L~~~~-i~l~vIDEAHCiSqWGhdFRP--------------~ 153 (590)
T COG0514 99 VLNQL----------KSGQLKLLYISPERLMSPRFLELLKRLP-ISLVAIDEAHCISQWGHDFRP--------------D 153 (590)
T ss_pred HHHHH----------hcCceeEEEECchhhcChHHHHHHHhCC-CceEEechHHHHhhcCCccCH--------------h
Confidence 22211 1235777877744332334555554221 11232 2334444 0
Q ss_pred HHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhcc---ccchhhhcCchhHHHHHHh--hh---hc
Q psy14582 898 LKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKD---TLGQFLREGSASMEVLRTE--AD---QV 969 (1689)
Q Consensus 898 ~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~---~l~~fl~~~~~~~e~l~~~--~~---~~ 969 (1689)
..++ ..+....+.-|++.++.|-. ..+-..+.....-.. ....|-+.+ ...++.... .. -+
T Consensus 154 Y~~l--------g~l~~~~~~~p~~AlTATA~--~~v~~DI~~~L~l~~~~~~~~sfdRpN-i~~~v~~~~~~~~q~~fi 222 (590)
T COG0514 154 YRRL--------GRLRAGLPNPPVLALTATAT--PRVRDDIREQLGLQDANIFRGSFDRPN-LALKVVEKGEPSDQLAFL 222 (590)
T ss_pred HHHH--------HHHHhhCCCCCEEEEeCCCC--hHHHHHHHHHhcCCCcceEEecCCCch-hhhhhhhcccHHHHHHHH
Confidence 0111 12223344568888876633 333344443322111 111111110 000000000 00 00
Q ss_pred cchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEccc
Q psy14582 970 KNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTAT 1049 (1689)
Q Consensus 970 ~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~T 1049 (1689)
.+ .+......||.|-. ++..=+.+-+......+++. .-..++.--+|..++++|..+.+.++|||..
T Consensus 223 ~~-~~~~~~~~GIIYc~---sRk~~E~ia~~L~~~g~~a~---------~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~A 289 (590)
T COG0514 223 AT-VLPQLSKSGIIYCL---TRKKVEELAEWLRKNGISAG---------AYHAGLSNEERERVQQAFLNDEIKVMVATNA 289 (590)
T ss_pred Hh-hccccCCCeEEEEe---eHHhHHHHHHHHHHCCCceE---------EecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Confidence 00 11122233444443 33333333333333333333 1224455558999999999999999999999
Q ss_pred ccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1050 LAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1050 La~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
+.+|||=|..+-|| +||. |.++.-..-=+||+| +.|
T Consensus 290 FGMGIdKpdVRfVi----H~~l---------P~s~EsYyQE~GRAG--RDG 325 (590)
T COG0514 290 FGMGIDKPDVRFVI----HYDL---------PGSIESYYQETGRAG--RDG 325 (590)
T ss_pred ccCccCCCCceEEE----EecC---------CCCHHHHHHHHhhcc--CCC
Confidence 99999999777665 4664 999999999999999 666
No 212
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.69 E-value=0.0018 Score=83.98 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=18.7
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHH
Q psy14582 916 AGRNQLLVFVHSRKETGKTARAIRD 940 (1689)
Q Consensus 916 ~~~~~vLVFv~srk~~~~~a~~L~~ 940 (1689)
..++.+.||++|...++.+++....
T Consensus 280 ~~gknIcvfsSt~~~~~~v~~~~~~ 304 (824)
T PF02399_consen 280 NAGKNICVFSSTVSFAEIVARFCAR 304 (824)
T ss_pred hCCCcEEEEeChHHHHHHHHHHHHh
Confidence 3467888999998888777776554
No 213
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.62 E-value=0.001 Score=92.38 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=38.3
Q ss_pred ceeEeccCCCHHHHHHHHHHHhcCCeEEEEE----cchhccCCCCCC-ccee
Q psy14582 981 GFAIHHAGMTRVDRTLVEDLFADRHIQVLVS----TATLAWGVNLPA-HTVV 1027 (1689)
Q Consensus 981 Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVa----T~vl~rGIDIp~-V~~V 1027 (1689)
.++..||+|+. .+++.|++|+++|||| |++++||||+|+ |++|
T Consensus 355 ~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~v 402 (1171)
T TIGR01054 355 KAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYA 402 (1171)
T ss_pred eEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEE
Confidence 34689999973 6889999999999999 599999999999 7999
No 214
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.0025 Score=77.82 Aligned_cols=98 Identities=17% Similarity=0.276 Sum_probs=71.8
Q ss_pred CceeEeccCCCHHHHHHHHHHH-hcCCeEEEEEcch-----------hccCCCCCCccee--------------ehhhHH
Q psy14582 980 YGFAIHHAGMTRVDRTLVEDLF-ADRHIQVLVSTAT-----------LAWGVNLPAHTVV--------------DRTLVE 1033 (1689)
Q Consensus 980 ~Gi~~hHagl~~~dR~~ve~~F-~~g~i~VLVaT~v-----------l~rGIDIp~V~~V--------------~R~~~~ 1033 (1689)
...++-|..|... +..+.+.| +.+.-+|+|.|.. ..-|++.. +.+| +...++
T Consensus 341 ~~~~v~HPKl~~l-~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI 418 (542)
T COG1111 341 DESGVEHPKLEKL-REILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR-VRFIGQASREGDKGMSQKEQKEII 418 (542)
T ss_pred ccccCCCccHHHH-HHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce-eEEeeccccccccccCHHHHHHHH
Confidence 3455668877544 45555566 6677999999963 33467766 5666 567899
Q ss_pred HHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCccee-cCHHHHHHHhcccCC
Q psy14582 1034 DLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVE-LGALDVLQMLGRAGR 1093 (1689)
Q Consensus 1034 ~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~-~s~~d~lQm~GRAGR 1093 (1689)
+.|+.|.+++|||||...-|+|+|... -.+- -+..+=+-++-|-||
T Consensus 419 ~~Fr~Ge~nVLVaTSVgEEGLDIp~vD--------------lVifYEpvpSeIR~IQR~GR 465 (542)
T COG1111 419 DQFRKGEYNVLVATSVGEEGLDIPEVD--------------LVIFYEPVPSEIRSIQRKGR 465 (542)
T ss_pred HHHhcCCceEEEEcccccccCCCCccc--------------EEEEecCCcHHHHHHHhhCc
Confidence 999999999999999999999999761 1112 256777788888777
No 215
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.49 E-value=0.00013 Score=96.46 Aligned_cols=168 Identities=31% Similarity=0.389 Sum_probs=114.3
Q ss_pred HHHhcCCcEEEEccCCCChHHHHHHHHHHHHh---hcc---c-CCCCC-----CCCCeEEEEEccchhh--hHh------
Q psy14582 492 SALESDENLLLCAPTGAGKTNVALLCMLQEIG---KHI---N-ADGTI-----NADEFKIIYVAPMRSL--VQE------ 551 (1689)
Q Consensus 492 ~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~---~~~---~-~~g~~-----~~~~~kvl~laPtreL--a~Q------ 551 (1689)
.+.+.+.-++-.+|| |.+|.... ..+. ... . ..|.. ...+.-+|+.+|-|-= -.-
T Consensus 71 ~l~~~~~k~vYivPl---kALa~Ek~--~~~~~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~ 145 (766)
T COG1204 71 TLLEGGGKVVYIVPL---KALAEEKY--EEFSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIE 145 (766)
T ss_pred HHHhcCCcEEEEeCh---HHHHHHHH--HHhhhHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhh
Confidence 334335778888888 77776543 2222 110 0 00111 1244568888886522 111
Q ss_pred hhhcccccchhhccCC-CchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCccccce
Q psy14582 552 MVGNFGKDEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALE 630 (1689)
Q Consensus 552 i~~~f~kde~hll~de-~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r~~~l~ 630 (1689)
-++.+.-||+|+++|+ ||..++.+++++.+. ...+|++++|||+||.+++++|++.....+.+.+....++++..
T Consensus 146 ~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~----~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~ 221 (766)
T COG1204 146 EVDLVVIDEIHLLGDRTRGPVLESIVARMRRL----NELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYV 221 (766)
T ss_pred cccEEEEeeeeecCCcccCceehhHHHHHHhh----CcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccc
Confidence 1233444999999998 999999999997654 34499999999999999999999998777778889999999999
Q ss_pred eEEEEechhhHHHHHHHhhhhHHHHHHhh-ccccceEEEe
Q psy14582 631 QQYIGVTEKKALKRFQVMNDIVYEKVMEH-AGRNQLLVST 669 (1689)
Q Consensus 631 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~iiV~T 669 (1689)
+.+.+..+... ......+..++++.... ....|++|++
T Consensus 222 ~~~~~~~~~~k-~~~~~~~~~~~~~v~~~~~~~~qvLvFv 260 (766)
T COG1204 222 GAFLGADGKKK-TWPLLIDNLALELVLESLAEGGQVLVFV 260 (766)
T ss_pred eEEEEecCccc-cccccchHHHHHHHHHHHhcCCeEEEEE
Confidence 99999886554 22233334455555554 4466999998
No 216
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.49 E-value=0.0047 Score=76.03 Aligned_cols=43 Identities=28% Similarity=0.409 Sum_probs=35.7
Q ss_pred hcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccC
Q psy14582 1037 ADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAG 1092 (1689)
Q Consensus 1037 ~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAG 1092 (1689)
+.+..++||||+.+++|+|+|...||+ +| .+..+|+||+||+|
T Consensus 315 ~~~~~~iLVaTdv~~rGiDi~~~~vi~------~p-------~~~~~yiqR~GR~g 357 (357)
T TIGR03158 315 RAMQFDILLGTSTVDVGVDFKRDWLIF------SA-------RDAAAFWQRLGRLG 357 (357)
T ss_pred HhccCCEEEEecHHhcccCCCCceEEE------CC-------CCHHHHhhhcccCC
Confidence 455789999999999999999886653 23 35889999999998
No 217
>KOG0921|consensus
Probab=97.47 E-value=0.00059 Score=86.80 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=88.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHH
Q psy14582 918 RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLV 997 (1689)
Q Consensus 918 ~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~v 997 (1689)
.+-++||.+.-.....+..++.....- .++-.+.+--.|+-++..++..|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~f------------------------------g~~~~y~ilp~Hsq~~~~eqrkv 692 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEF------------------------------GQANKYEILPLHSQLTSQEQRKV 692 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhh------------------------------ccchhcccccchhhcccHhhhhc
Confidence 467889999888777777766543211 11112223333888999999999
Q ss_pred HHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcce
Q psy14582 998 EDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWV 1077 (1689)
Q Consensus 998 e~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~ 1077 (1689)
.+....|..+++++|++++..+.|.++.+| .++.+..+.-.|+ |.+.+ +| ..+
T Consensus 693 f~~~p~gv~kii~stniaetsiTidd~v~v--------id~cka~~~~~~s----------~nn~~----~~-----Atv 745 (1282)
T KOG0921|consen 693 FEPVPEGVTKIILSTNIAETSITIDDVVYV--------IDSCKAKEKLFTS----------HNNMT----HY-----ATV 745 (1282)
T ss_pred cCcccccccccccccceeeEeeeecceeEE--------Eeeeeeeeeeecc----------cccee----ee-----eee
Confidence 999999999999999999999999998888 2223322222221 11100 00 112
Q ss_pred ecCHHHHHHHhcccCCCCCCCccEEEEEecCCcH
Q psy14582 1078 ELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL 1111 (1689)
Q Consensus 1078 ~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~ 1111 (1689)
..|.....|+-|||||. +.|.|..+|+.-..
T Consensus 746 w~sktn~eqr~gr~grv---R~G~~f~lcs~arF 776 (1282)
T KOG0921|consen 746 WASKTNLEQRKGRAGRV---RPGFCFHLCSRARF 776 (1282)
T ss_pred cccccchHhhcccCcee---cccccccccHHHHH
Confidence 34566789999999996 58889888875433
No 218
>KOG1000|consensus
Probab=97.41 E-value=0.0052 Score=74.26 Aligned_cols=37 Identities=35% Similarity=0.294 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHH
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lL 516 (1689)
..+-|+|.+-+.-++++|..+|+.-.-|-|||.-|+.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla 233 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA 233 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH
Confidence 3468999999999999999999999999999988753
No 219
>KOG0387|consensus
Probab=97.37 E-value=0.026 Score=72.24 Aligned_cols=112 Identities=22% Similarity=0.235 Sum_probs=77.8
Q ss_pred ccCCCHHHHHHHHHHHhcCCeEEEEEcc------hhccCCC-CCCccee---------ehhhHHHHhhcccc--eEEEEc
Q psy14582 986 HAGMTRVDRTLVEDLFADRHIQVLVSTA------TLAWGVN-LPAHTVV---------DRTLVEDLFADRHI--QVLVST 1047 (1689)
Q Consensus 986 Hagl~~~dR~~ve~~F~~g~i~VLVaT~------vl~rGID-Ip~V~~V---------~R~~~~~~f~~g~i--~vLVaT 1047 (1689)
|+|--..-..+.-..++.|. +||+.|+ +++..++ .++.+++ .|-..++.|+.+.. -.|.+|
T Consensus 528 ~sGKm~vl~~ll~~W~kqg~-rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTT 606 (923)
T KOG0387|consen 528 RSGKMKVLAKLLKDWKKQGD-RVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTT 606 (923)
T ss_pred hcchHHHHHHHHHHHhhCCC-EEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEe
Confidence 44444455556666778888 8887774 6777877 6777777 88999999997774 667889
Q ss_pred ccccccCCCC-CceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCC
Q psy14582 1048 ATLAWGVNLP-AHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS 1109 (1689)
Q Consensus 1048 ~TLa~GvNLP-a~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~ 1109 (1689)
..-.-|+||- |++||| |||. |- |..=.|-.-||=|-|--+.=.+|-+.+..
T Consensus 607 rvGGLGlNLTgAnRVII-----fDPd---WN---PStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 607 RVGGLGLNLTGANRVII-----FDPD---WN---PSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred cccccccccccCceEEE-----ECCC---CC---CccchHHHHHHHhhcCccceEEEEEecCC
Confidence 9999999998 888887 6664 32 33445666677776643344445555553
No 220
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=97.36 E-value=0.003 Score=83.62 Aligned_cols=56 Identities=27% Similarity=0.252 Sum_probs=43.0
Q ss_pred ehh-----hHHHHhhc----cc-------ceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhccc
Q psy14582 1028 DRT-----LVEDLFAD----RH-------IQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRA 1091 (1689)
Q Consensus 1028 ~R~-----~~~~~f~~----g~-------i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRA 1091 (1689)
+|. .+++.|++ +. .++||||..+++|+|+|.. .+=......-.++.|+
T Consensus 308 dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d----------------~VI~d~aP~esyIQRi 371 (844)
T TIGR02621 308 ERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISAD----------------HLVCDLAPFESMQQRF 371 (844)
T ss_pred HHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCcc----------------eEEECCCCHHHHHHHh
Confidence 677 77899987 44 6899999999999999965 1333344566799999
Q ss_pred CCCCCCCccE
Q psy14582 1092 GRPQYDTKGE 1101 (1689)
Q Consensus 1092 GR~g~d~~G~ 1101 (1689)
||.| +.|.
T Consensus 372 GRtg--R~G~ 379 (844)
T TIGR02621 372 GRVN--RFGE 379 (844)
T ss_pred cccC--CCCC
Confidence 9998 6564
No 221
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.001 Score=88.79 Aligned_cols=137 Identities=33% Similarity=0.485 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc--
Q psy14582 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK-- 558 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k-- 558 (1689)
+|.++|++++- ++++|++++||||||||||.++..+|-..+. ++.|++|.+|.|||.+|.+.+|..
T Consensus 119 ~LD~fQ~~a~~-~Ler~esVlV~ApTssGKTvVaeyAi~~al~-----------~~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 119 ELDPFQQEAIA-ILERGESVLVCAPTSSGKTVVAEYAIALALR-----------DGQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CcCHHHHHHHH-HHhCCCcEEEEccCCCCcchHHHHHHHHHHH-----------cCCceEeccchhhhhhhHHHHHHHHh
Confidence 58999999995 5669999999999999999999999987776 334799999999999998765432
Q ss_pred -------------------------------------------------cchhhccC-CCchHHHHHHHHHHHHHhhccc
Q psy14582 559 -------------------------------------------------DEIHLLHD-ERGPVLEALIARTIRNIEATQE 588 (1689)
Q Consensus 559 -------------------------------------------------de~hll~d-e~g~~le~~~~~~~~~~~~~~~ 588 (1689)
||+|+++| +||-+||..+.- .+.
T Consensus 187 gdv~~~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~-------lP~ 259 (1041)
T COG4581 187 GDVADMVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL-------LPD 259 (1041)
T ss_pred hhhhhhccceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHh-------cCC
Confidence 79999999 899999999885 688
Q ss_pred CceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCccccceeEEEEe
Q psy14582 589 DVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGV 636 (1689)
Q Consensus 589 ~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~ 636 (1689)
.+|+++||||+||..++++|+.......++++.+++||+||+.+++.-
T Consensus 260 ~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~ 307 (1041)
T COG4581 260 HVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVG 307 (1041)
T ss_pred CCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecC
Confidence 899999999999999999999977778899999999999999887765
No 222
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.30 E-value=0.00075 Score=70.55 Aligned_cols=83 Identities=25% Similarity=0.392 Sum_probs=47.9
Q ss_pred EeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH-----------------------------
Q psy14582 758 FRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM----------------------------- 808 (1689)
Q Consensus 758 ~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~----------------------------- 808 (1689)
+.+.+|+|||-..+-.+++...+ .+.|+|+++|||.++.++
T Consensus 9 ~d~hpGaGKTr~vlp~~~~~~i~----------~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vM 78 (148)
T PF07652_consen 9 LDLHPGAGKTRRVLPEIVREAIK----------RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVM 78 (148)
T ss_dssp EE--TTSSTTTTHHHHHHHHHHH----------TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEE
T ss_pred EecCCCCCCcccccHHHHHHHHH----------ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCccccc
Confidence 44679999998765444443222 368999999999999882
Q ss_pred -----------------hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCC
Q psy14582 809 -----------------VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLP 856 (1689)
Q Consensus 809 -----------------v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~ 856 (1689)
+++||+||+|... ...+. .... ++... .....++|.+|||.|
T Consensus 79 c~at~~~~~~~p~~~~~yd~II~DEcH~~D--p~sIA--~rg~-l~~~~-~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 79 CHATYGHFLLNPCRLKNYDVIIMDECHFTD--PTSIA--ARGY-LRELA-ESGEAKVIFMTATPP 137 (148)
T ss_dssp EHHHHHHHHHTSSCTTS-SEEEECTTT--S--HHHHH--HHHH-HHHHH-HTTS-EEEEEESS-T
T ss_pred ccHHHHHHhcCcccccCccEEEEeccccCC--HHHHh--hhee-HHHhh-hccCeeEEEEeCCCC
Confidence 7999999999742 11111 1111 11111 223578999999998
No 223
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.20 E-value=0.011 Score=77.54 Aligned_cols=66 Identities=17% Similarity=0.021 Sum_probs=38.9
Q ss_pred hhhHHHHhhcccceEEEEcccccccCCCCCc-eEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1029 RTLVEDLFADRHIQVLVSTATLAWGVNLPAH-TVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1029 R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~-~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
++..+-+++.....++|||..+++|+|+|-. .|.=.|.-. -...+.+.+-.--..|.||.| +.|..
T Consensus 461 ~E~~ii~~ag~~g~VlIATdmAgRGtDI~l~~~v~~~GGL~------vIit~~~ps~rid~qr~GRtG--RqG~~ 527 (762)
T TIGR03714 461 KEAQIIAEAGQKGAVTVATSMAGRGTDIKLGKGVAELGGLA------VIGTERMENSRVDLQLRGRSG--RQGDP 527 (762)
T ss_pred HHHHHHHHcCCCCeEEEEccccccccCCCCCccccccCCeE------EEEecCCCCcHHHHHhhhccc--CCCCc
Confidence 3344444444445889999999999999933 222222211 112344455555667899988 76643
No 224
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.20 E-value=0.0063 Score=79.94 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=42.6
Q ss_pred hhhHHHHh-hcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCC
Q psy14582 1029 RTLVEDLF-ADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1029 R~~~~~~f-~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g 1095 (1689)
++..+++| ++|+.++||||..++.|+++|.-.+||.-...+ ...-..-.-...+--+...|+||+|
T Consensus 434 ~eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k-~p~~~~g~~~~iSkasa~QRaGRAG 500 (675)
T PHA02653 434 IDEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVY-VPEPFGGKEMFISKSMRTQRKGRVG 500 (675)
T ss_pred HHHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCcc-CCCcccCcccccCHHHHHHhccCcC
Confidence 44556676 799999999999999999999998887421100 0000000000114456789999986
No 225
>KOG0390|consensus
Probab=97.18 E-value=0.14 Score=67.26 Aligned_cols=97 Identities=21% Similarity=0.164 Sum_probs=61.1
Q ss_pred hcccCCceeEeccCCCHHHHHHHHHHHhcCC--eEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccc
Q psy14582 975 RDLLPYGFAIHHAGMTRVDRTLVEDLFADRH--IQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAW 1052 (1689)
Q Consensus 975 ~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~--i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~ 1052 (1689)
.....+.+-..||.|+..+|..+.+.|.+-. ..|+ |.+|-.-+.
T Consensus 615 ~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vf----------------------------------LlSsKAgg~ 660 (776)
T KOG0390|consen 615 CRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVF----------------------------------LLSSKAGGE 660 (776)
T ss_pred HhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEE----------------------------------EEecccccC
Confidence 3444667778899999999999999998653 2444 133333444
Q ss_pred cCCCC-CceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecC--CcHHHHHH
Q psy14582 1053 GVNLP-AHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNH--SELQYYLS 1116 (1689)
Q Consensus 1053 GvNLP-a~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~--~~~~~y~~ 1116 (1689)
|+||= |.+||+ ||+. -.|+.=.|-++||=|+|--+.-.+|-+... -+...|.+
T Consensus 661 GinLiGAsRlil-----~D~d------WNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qr 716 (776)
T KOG0390|consen 661 GLNLIGASRLIL-----FDPD------WNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQR 716 (776)
T ss_pred ceeecccceEEE-----eCCC------CCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHH
Confidence 55544 455555 4442 446677899999999995444444444433 34445544
No 226
>PRK13766 Hef nuclease; Provisional
Probab=97.18 E-value=0.0092 Score=81.22 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=46.1
Q ss_pred eehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecC-HHHHHHHhcccCCCC
Q psy14582 1027 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELG-ALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1027 V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s-~~d~lQm~GRAGR~g 1095 (1689)
-+|..+++.|++|.+++||||+.++.|+|+|.. ..-+.|. +.+..+++.|+||+|
T Consensus 410 ~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~--------------~~VI~yd~~~s~~r~iQR~GR~g 465 (773)
T PRK13766 410 KEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSV--------------DLVIFYEPVPSEIRSIQRKGRTG 465 (773)
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccC--------------CEEEEeCCCCCHHHHHHHhcccC
Confidence 367789999999999999999999999999844 2234454 688999999999986
No 227
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.15 E-value=0.011 Score=78.44 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=45.0
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEE-EeceeeecCCCCcceec-C-HHHHHHHhcccCCCC
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVI-IKGTQIYNPEKGRWVEL-G-ALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VI-I~gt~~yd~~~~~~~~~-s-~~d~lQm~GRAGR~g 1095 (1689)
.++.+++.|++|++++||+|..++.|+|+|..++| |.+. |...+. -++ + -..|.+...++||.|
T Consensus 468 ~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~a---D~~l~~-pdfra~Er~~~~l~q~~GRag 534 (679)
T PRK05580 468 ALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDA---DLGLFS-PDFRASERTFQLLTQVAGRAG 534 (679)
T ss_pred hHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcC---chhccC-CccchHHHHHHHHHHHHhhcc
Confidence 36788999999999999999999999999987644 3332 111000 012 1 134567889999988
No 228
>KOG0352|consensus
Probab=97.07 E-value=0.023 Score=67.60 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=30.8
Q ss_pred eehhhHHHHhhcccceEEEEcccccccCCCCCc
Q psy14582 1027 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAH 1059 (1689)
Q Consensus 1027 V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~ 1059 (1689)
-+|+.++.+--.+++-+|+||-.+.+|||=|..
T Consensus 292 ~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~V 324 (641)
T KOG0352|consen 292 KERTEVQEKWMNNEIPVIAATVSFGMGVDKPDV 324 (641)
T ss_pred chhHHHHHHHhcCCCCEEEEEeccccccCCcce
Confidence 389999999999999999999999999998876
No 229
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.02 E-value=0.002 Score=67.50 Aligned_cols=53 Identities=28% Similarity=0.374 Sum_probs=37.4
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
.|+-.++-..+|||||--.+--++++-.. .+.|+|+++|||.++.++...+..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~----------~~~rvLvL~PTRvva~em~~aL~~ 55 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK----------RRLRVLVLAPTRVVAEEMYEALKG 55 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH----------TT--EEEEESSHHHHHHHHHHTTT
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH----------ccCeEEEecccHHHHHHHHHHHhc
Confidence 35556889999999998776656654443 346999999999999998776654
No 230
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.97 E-value=0.013 Score=75.36 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=43.7
Q ss_pred hhHHHHhhcccceEEEEcccccccCCCCCce-EEEeceeeecCCCCcceec-C-HHHHHHHhcccCCCC
Q psy14582 1030 TLVEDLFADRHIQVLVSTATLAWGVNLPAHT-VIIKGTQIYNPEKGRWVEL-G-ALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1030 ~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~-VII~gt~~yd~~~~~~~~~-s-~~d~lQm~GRAGR~g 1095 (1689)
+.+++.|++|++++||+|..++.|+|+|..+ |+|-+. |..-+. -++ + -..+.+...++||+|
T Consensus 302 ~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~a---D~~l~~-pd~ra~E~~~~ll~q~~GRag 366 (505)
T TIGR00595 302 EALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDA---DSGLHS-PDFRAAERGFQLLTQVAGRAG 366 (505)
T ss_pred HHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcC---cccccC-cccchHHHHHHHHHHHHhccC
Confidence 6789999999999999999999999999776 444332 211110 111 1 123567889999988
No 231
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=96.93 E-value=0.0024 Score=78.22 Aligned_cols=102 Identities=30% Similarity=0.341 Sum_probs=82.3
Q ss_pred ccchhhccC-CCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCccccceeEEEEe
Q psy14582 558 KDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGV 636 (1689)
Q Consensus 558 kde~hll~d-e~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~ 636 (1689)
.||+|++.| +||.-++-++.|+.+ ..+.-|.+++|||+.|...++..+ +..+...+.||+||+.+++.+
T Consensus 344 IDEiHtL~deERG~RLdGLI~RLr~----l~~~AQ~i~LSATVgNp~elA~~l------~a~lV~y~~RPVplErHlvf~ 413 (830)
T COG1202 344 IDEIHTLEDEERGPRLDGLIGRLRY----LFPGAQFIYLSATVGNPEELAKKL------GAKLVLYDERPVPLERHLVFA 413 (830)
T ss_pred eeeeeeccchhcccchhhHHHHHHH----hCCCCeEEEEEeecCChHHHHHHh------CCeeEeecCCCCChhHeeeee
Confidence 399999998 899999999998754 456899999999999999999984 456778899999999999888
Q ss_pred ch-hhHHHHHHHhhhhHHHHHHhhccccceEEEe
Q psy14582 637 TE-KKALKRFQVMNDIVYEKVMEHAGRNQLLVST 669 (1689)
Q Consensus 637 ~~-~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~T 669 (1689)
.. ....+...-.....|........++|.||+|
T Consensus 414 ~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT 447 (830)
T COG1202 414 RNESEKWDIIARLVKREFSTESSKGYRGQTIVFT 447 (830)
T ss_pred cCchHHHHHHHHHHHHHHhhhhccCcCCceEEEe
Confidence 73 3334444444456666667778899999999
No 232
>KOG0947|consensus
Probab=96.93 E-value=0.00059 Score=87.56 Aligned_cols=138 Identities=30% Similarity=0.432 Sum_probs=122.6
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc-
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK- 558 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k- 558 (1689)
.+|.+.|++|+- ++.+|..|.|.|+|.||||++|..+|.-.-. .+.|+||.+|-|+|.+|.++.|+.
T Consensus 296 FelD~FQk~Ai~-~lerg~SVFVAAHTSAGKTvVAEYAialaq~-----------h~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 296 FELDTFQKEAIY-HLERGDSVFVAAHTSAGKTVVAEYAIALAQK-----------HMTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred CCccHHHHHHHH-HHHcCCeEEEEecCCCCcchHHHHHHHHHHh-----------hccceEecchhhhhccchHHHHHHh
Confidence 468999999995 5669999999999999999999998754332 345999999999999999998875
Q ss_pred ----------------------------------------------cchhhccC-CCchHHHHHHHHHHHHHhhcccCce
Q psy14582 559 ----------------------------------------------DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVR 591 (1689)
Q Consensus 559 ----------------------------------------------de~hll~d-e~g~~le~~~~~~~~~~~~~~~~~q 591 (1689)
||.|+++| +||-+||.+++ .+++.++
T Consensus 364 F~DvgLlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViI-------MlP~HV~ 436 (1248)
T KOG0947|consen 364 FGDVGLLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVII-------MLPRHVN 436 (1248)
T ss_pred ccccceeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeee-------eccccce
Confidence 79999999 99999999887 5799999
Q ss_pred EEEEeecCCCHHHHHHHHhhCCCCCceeecCCCccccceeEEEEe
Q psy14582 592 LVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGV 636 (1689)
Q Consensus 592 ~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~ 636 (1689)
++++|||+||...+++|++......++++.+..||+||+-+++.-
T Consensus 437 ~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~ 481 (1248)
T KOG0947|consen 437 FILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTK 481 (1248)
T ss_pred EEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEec
Confidence 999999999999999999998888899999999999998776663
No 233
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=96.81 E-value=0.04 Score=70.43 Aligned_cols=65 Identities=22% Similarity=0.363 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCeEEEEEcchhccC-CCC--------------CC--ccee-------ehhhHHHHhhcccceEEEEcccc
Q psy14582 995 TLVEDLFADRHIQVLVSTATLAWG-VNL--------------PA--HTVV-------DRTLVEDLFADRHIQVLVSTATL 1050 (1689)
Q Consensus 995 ~~ve~~F~~g~i~VLVaT~vl~rG-IDI--------------p~--V~~V-------~R~~~~~~f~~g~i~vLVaT~TL 1050 (1689)
..|.+....|+--..||+=+-+-. ++. |+ |.++ +.+.++++|++|++++||||...
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI 543 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI 543 (677)
T ss_pred HHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEE
Confidence 345556667777777776543322 332 22 3333 88999999999999999999999
Q ss_pred cccCCCCCc
Q psy14582 1051 AWGVNLPAH 1059 (1689)
Q Consensus 1051 a~GvNLPa~ 1059 (1689)
++|||+|.-
T Consensus 544 EVGVdVPnA 552 (677)
T COG1200 544 EVGVDVPNA 552 (677)
T ss_pred EecccCCCC
Confidence 999999976
No 234
>PHA02558 uvsW UvsW helicase; Provisional
Probab=96.80 E-value=0.013 Score=75.58 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=46.2
Q ss_pred ehhhHHHHhhcccceEEEEc-ccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCC
Q psy14582 1028 DRTLVEDLFADRHIQVLVST-ATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT-~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g 1095 (1689)
+|..+++.|++|...+|||| ..++.|+|+|.- ..-....++.+..+.+-|+||.+
T Consensus 382 eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~l-------------d~vIl~~p~~s~~~~~QriGR~~ 437 (501)
T PHA02558 382 DRNEMKKIAEGGKGIIIVASYGVFSTGISIKNL-------------HHVIFAHPSKSKIIVLQSIGRVL 437 (501)
T ss_pred HHHHHHHHHhCCCCeEEEEEcceeccccccccc-------------cEEEEecCCcchhhhhhhhhccc
Confidence 89999999999999999998 799999999965 12233567777888999999987
No 235
>KOG0385|consensus
Probab=96.79 E-value=0.14 Score=65.45 Aligned_cols=64 Identities=22% Similarity=0.198 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHH---HHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHh
Q psy14582 480 KTLNRIQSRLCKS---ALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 551 (1689)
Q Consensus 480 ~~~tpiQ~~aip~---al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Q 551 (1689)
..++++|.+-+.- .++.|-|.|+.-.-|-|||+-. +..|..+....+..| --++++|.-.|.+=
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~G-------PfLVi~P~StL~NW 232 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPG-------PFLVIAPKSTLDNW 232 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCC-------CeEEEeeHhhHHHH
Confidence 4678888776543 3467889999999999999864 222333333222112 36788998777643
No 236
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.77 E-value=0.14 Score=63.76 Aligned_cols=144 Identities=11% Similarity=0.119 Sum_probs=85.3
Q ss_pred cceEEEEecCCCCHHHHHHHhhc--CCCccEEEecCCCc--------ccceEEEEEeechh----hHHHHHHHhhHHHHH
Q psy14582 845 DVRLVGLSATLPNYKDVATLLRI--KPETGLFYFDNSFR--------PVALEQQYIGVTEK----KALKRFQVMNDIVYE 910 (1689)
Q Consensus 845 ~~riV~lSATl~n~~dva~~L~~--~~~~~~~~f~~~~R--------pvpL~~~~~~~~~~----~~~~~~~~m~~~~~~ 910 (1689)
-.|.|++|+... .++...+.. ....|..-+...+. .+++.|.|..++.. ....++....+.++.
T Consensus 215 ~RQtii~S~~~~--pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP 292 (442)
T PF06862_consen 215 YRQTIIFSSFQT--PEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILP 292 (442)
T ss_pred eeEeEEecCCCC--HHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHH
Confidence 468999998876 223333222 11122222212111 24577777766543 234556666666665
Q ss_pred HHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCC
Q psy14582 911 KVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMT 990 (1689)
Q Consensus 911 ~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~ 990 (1689)
.+.+....+.+|||++|--+=.++-..|.... ..++..|.-.+
T Consensus 293 ~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~-------------------------------------~sF~~i~EYts 335 (442)
T PF06862_consen 293 QLKRDSKMSGTLIFIPSYFDFVRLRNYLKKEN-------------------------------------ISFVQISEYTS 335 (442)
T ss_pred HhhhccCCCcEEEEecchhhhHHHHHHHHhcC-------------------------------------CeEEEecccCC
Confidence 55543345789999999877777666665311 12333466677
Q ss_pred HHHHHHHHHHHhcCCeEEEEEcchh--ccCCCCCCccee
Q psy14582 991 RVDRTLVEDLFADRHIQVLVSTATL--AWGVNLPAHTVV 1027 (1689)
Q Consensus 991 ~~dR~~ve~~F~~g~i~VLVaT~vl--~rGIDIp~V~~V 1027 (1689)
..+-...-..|..|+.++|+.|--+ =+-..|.+++.|
T Consensus 336 ~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~v 374 (442)
T PF06862_consen 336 NSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHV 374 (442)
T ss_pred HHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEE
Confidence 8888888999999999999888422 133444555554
No 237
>KOG0389|consensus
Probab=96.72 E-value=0.14 Score=65.83 Aligned_cols=118 Identities=21% Similarity=0.216 Sum_probs=77.9
Q ss_pred hcCCeEEEEEc------chhccCCCCCCccee---------ehhhHHHHhhccc--ceEEEEcccccccCCCCCceEEEe
Q psy14582 1002 ADRHIQVLVST------ATLAWGVNLPAHTVV---------DRTLVEDLFADRH--IQVLVSTATLAWGVNLPAHTVIIK 1064 (1689)
Q Consensus 1002 ~~g~i~VLVaT------~vl~rGIDIp~V~~V---------~R~~~~~~f~~g~--i~vLVaT~TLa~GvNLPa~~VII~ 1064 (1689)
.+| -+||+.+ |+++.=+|+-++.+. +|...+..|..++ .-.|.+|-.-..|+||-+..+||-
T Consensus 775 ~~G-~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi 853 (941)
T KOG0389|consen 775 KKG-DRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII 853 (941)
T ss_pred hcC-CEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE
Confidence 445 6777776 467777777666666 8999999999888 367889999999999995555544
Q ss_pred ceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHH-HHHHHhhCcCCccccccc
Q psy14582 1065 GTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQ-YYLSLLNHQLPVESQMIS 1130 (1689)
Q Consensus 1065 gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~-~y~~ll~~~~pieS~l~~ 1130 (1689)
-..-|+|. +=.|---||-|.|--++-.++-+.+.+..+ ...++-+..+.+|+.+..
T Consensus 854 hD~dFNP~----------dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~ 910 (941)
T KOG0389|consen 854 HDIDFNPY----------DDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTE 910 (941)
T ss_pred eecCCCCc----------ccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhcc
Confidence 33445553 223444444444433555666666666554 455566667777777654
No 238
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.60 E-value=0.032 Score=74.76 Aligned_cols=49 Identities=29% Similarity=0.263 Sum_probs=40.2
Q ss_pred CcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhc
Q psy14582 498 ENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGN 555 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~ 555 (1689)
-|+.+..+||+|||.+|+-.|+...... .-.+.|+++|+.+.-.-+...
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~---------~~~~fii~vp~~aI~egv~~~ 108 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY---------GLFKFIIVVPTPAIKEGTRNF 108 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc---------CCcEEEEEeCCHHHHHHHHHH
Confidence 5899999999999999999998766543 235899999999998877633
No 239
>KOG0948|consensus
Probab=96.56 E-value=0.00075 Score=84.59 Aligned_cols=137 Identities=31% Similarity=0.425 Sum_probs=109.0
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc---------------
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP--------------- 544 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP--------------- 544 (1689)
.++.|.|+.++. .+++++.+||+|.|.+|||.+|.++|.+.|... .|+||.+|
T Consensus 128 F~LDpFQ~~aI~-Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k-----------QRVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 128 FTLDPFQSTAIK-CIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK-----------QRVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred cccCchHhhhhh-hhcCCceEEEEeecCCCcchHHHHHHHHHHHhc-----------CeEEeeChhhhhcchhHHHHHHH
Confidence 368999999996 556899999999999999999999998888643 24444444
Q ss_pred ----------------------chhhhHhh-------hh---cccccchhhccC-CCchHHHHHHHHHHHHHhhcccCce
Q psy14582 545 ----------------------MRSLVQEM-------VG---NFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVR 591 (1689)
Q Consensus 545 ----------------------treLa~Qi-------~~---~f~kde~hll~d-e~g~~le~~~~~~~~~~~~~~~~~q 591 (1689)
|-|.-+.+ .+ .+--||+|++.| |||-+||.-+.- .++.++
T Consensus 196 F~DVGLMTGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIl-------lP~~vr 268 (1041)
T KOG0948|consen 196 FKDVGLMTGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIIL-------LPDNVR 268 (1041)
T ss_pred hcccceeecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEe-------ccccce
Confidence 22222221 11 112299999999 999999987763 589999
Q ss_pred EEEEeecCCCHHHHHHHHhhCCCCCceeecCCCccccceeEEEE
Q psy14582 592 LVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIG 635 (1689)
Q Consensus 592 ~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~ 635 (1689)
.+.+|||+||..++++|+..-...+|++.=++|||+||+-+++.
T Consensus 269 ~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP 312 (1041)
T KOG0948|consen 269 FVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFP 312 (1041)
T ss_pred EEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeec
Confidence 99999999999999999988777899999999999999876554
No 240
>KOG0337|consensus
Probab=96.52 E-value=0.023 Score=67.81 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=38.9
Q ss_pred ecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhcc
Q psy14582 760 LPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 812 (1689)
Q Consensus 760 aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~li 812 (1689)
+-||+|||.++++|+++.+..+. ..+.++++++|+|+|+.|.++++
T Consensus 65 artgsgktaaf~ipm~e~Lk~~s-------~~g~RalilsptreLa~qtlkvv 110 (529)
T KOG0337|consen 65 ARTGSGKTAAFLIPMIEKLKSHS-------QTGLRALILSPTRELALQTLKVV 110 (529)
T ss_pred eecCCcchhhHHHHHHHHHhhcc-------ccccceeeccCcHHHHHHHHHHH
Confidence 56999999999999999986642 24689999999999999976654
No 241
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=96.38 E-value=0.027 Score=67.20 Aligned_cols=54 Identities=24% Similarity=0.277 Sum_probs=31.0
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
..+..|++-.+|+|||..++..+.. +...... ....++|+|+|. ++..|...++
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~-l~~~~~~-----~~~~~~LIv~P~-~l~~~W~~E~ 77 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISY-LKNEFPQ-----RGEKKTLIVVPS-SLLSQWKEEI 77 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHH-HHHCCTT-----SS-S-EEEEE-T-TTHHHHHHHH
T ss_pred CCCCEEEEECCCCCchhhhhhhhhh-hhhcccc-----ccccceeEeecc-chhhhhhhhh
Confidence 3467899999999999988777653 3322110 112259999999 7777766444
No 242
>PF13245 AAA_19: Part of AAA domain
Probab=96.30 E-value=0.0088 Score=56.48 Aligned_cols=60 Identities=18% Similarity=0.352 Sum_probs=42.4
Q ss_pred HHHHHHhcCCc-EEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 489 LCKSALESDEN-LLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 489 aip~al~~g~n-vLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
++..++. +.. ++|.||.|||||...+-.+...+.... . .+.++++++||+..+.++.+.+
T Consensus 2 av~~al~-~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~------~-~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALA-GSPLFVVQGPPGTGKTTTLAARIAELLAARA------D-PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHh-hCCeEEEECCCCCCHHHHHHHHHHHHHHHhc------C-CCCeEEEECCCHHHHHHHHHHH
Confidence 4444563 444 556999999999777666666553211 0 1458999999999999988766
No 243
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.28 E-value=0.067 Score=70.53 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=45.0
Q ss_pred ehhhHHHHhhcc-cceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecC--HHHHHHHhcccCCCC
Q psy14582 1028 DRTLVEDLFADR-HIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELG--ALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1028 ~R~~~~~~f~~g-~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s--~~d~lQm~GRAGR~g 1095 (1689)
+|..+++.|+.+ .+++||+|..+..|+|+|.-. .-+-++ ..+-.|.+.|.||.+
T Consensus 529 ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~--------------vvI~~s~~~gS~~q~iQRlGRil 585 (732)
T TIGR00603 529 ERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEAN--------------VLIQISSHYGSRRQEAQRLGRIL 585 (732)
T ss_pred HHHHHHHHHHhCCCccEEEEecccccccCCCCCC--------------EEEEeCCCCCCHHHHHHHhcccc
Confidence 899999999865 889999999999999999662 133343 358999999999987
No 244
>KOG0950|consensus
Probab=96.23 E-value=0.0061 Score=79.31 Aligned_cols=152 Identities=33% Similarity=0.510 Sum_probs=119.0
Q ss_pred CccHHHHHhc---cCCCCCCHHHHHHH--HHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEE
Q psy14582 467 KLPRYVQHAF---EDFKTLNRIQSRLC--KSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIY 541 (1689)
Q Consensus 467 ~Lp~~~~~~f---~g~~~~tpiQ~~ai--p~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~ 541 (1689)
.+|+-..+.. +|...++.||.+++ |..+ .++|+|..+||++|||+++.+-|++...-.+ ..++.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~r----------r~~ll 274 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCRR----------RNVLL 274 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHHh----------hceeE
Confidence 5665444333 38899999999988 4455 7999999999999999999999998887532 25777
Q ss_pred EccchhhhHhhhhcccc--------------------------------------------------------cchhhcc
Q psy14582 542 VAPMRSLVQEMVGNFGK--------------------------------------------------------DEIHLLH 565 (1689)
Q Consensus 542 laPtreLa~Qi~~~f~k--------------------------------------------------------de~hll~ 565 (1689)
+.|..+-+++....+.. ||.|+++
T Consensus 275 ilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~ 354 (1008)
T KOG0950|consen 275 ILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIG 354 (1008)
T ss_pred ecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeee
Confidence 77777766664322211 8999999
Q ss_pred C-CCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCccccceeEEEEec
Q psy14582 566 D-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVT 637 (1689)
Q Consensus 566 d-e~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~ 637 (1689)
| +||..+|.++++++...... .+|++|+|||++|...++.|++ .+++...+||++|..++..-.
T Consensus 355 d~~rg~~lE~~l~k~~y~~~~~--~~~iIGMSATi~N~~lL~~~L~------A~~y~t~fRPv~L~E~ik~G~ 419 (1008)
T KOG0950|consen 355 DKGRGAILELLLAKILYENLET--SVQIIGMSATIPNNSLLQDWLD------AFVYTTRFRPVPLKEYIKPGS 419 (1008)
T ss_pred ccccchHHHHHHHHHHHhcccc--ceeEeeeecccCChHHHHHHhh------hhheecccCcccchhccCCCc
Confidence 8 89999999999988664333 3999999999999999999965 567889999999987764433
No 245
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.21 E-value=0.037 Score=62.31 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccccc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKD 559 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~kd 559 (1689)
+-.|+-|..++..++ ....+++.+|.|||||+.++...++.+... .--+++|+-|+.+...++- .+.-+
T Consensus 3 ~p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g---------~~~kiii~Rp~v~~~~~lG-flpG~ 71 (205)
T PF02562_consen 3 KPKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEG---------EYDKIIITRPPVEAGEDLG-FLPGD 71 (205)
T ss_dssp ---SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTT---------S-SEEEEEE-S--TT-----SS---
T ss_pred cCCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhC---------CCcEEEEEecCCCCccccc-cCCCC
Confidence 456889999998777 678899999999999999999999988742 1238899888876633321 11111
Q ss_pred chhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCccccceeEEEEechh
Q psy14582 560 EIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEK 639 (1689)
Q Consensus 560 e~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 639 (1689)
-...++-.+..+...+.... ....+...+... .--+.--...|...+...++.+.+.
T Consensus 72 --------~~eK~~p~~~p~~d~l~~~~-------------~~~~~~~~~~~~--~Ie~~~~~~iRGrt~~~~~iIvDEa 128 (205)
T PF02562_consen 72 --------LEEKMEPYLRPIYDALEELF-------------GKEKLEELIQNG--KIEIEPLAFIRGRTFDNAFIIVDEA 128 (205)
T ss_dssp --------------TTTHHHHHHHTTTS--------------TTCHHHHHHTT--SEEEEEGGGGTT--B-SEEEEE-SG
T ss_pred --------HHHHHHHHHHHHHHHHHHHh-------------ChHhHHHHhhcC--eEEEEehhhhcCccccceEEEEecc
Confidence 01111122222222221110 111233333211 1111234455667778899999999
Q ss_pred hHHHHHHHhhhhHHHHHH-hhccccceEEEe
Q psy14582 640 KALKRFQVMNDIVYEKVM-EHAGRNQLLVST 669 (1689)
Q Consensus 640 ~~l~~~~~~~~~~~~~~~-~~~~~~~iiV~T 669 (1689)
.++++.++. .++ +....+.++++-
T Consensus 129 QN~t~~~~k------~ilTR~g~~skii~~G 153 (205)
T PF02562_consen 129 QNLTPEELK------MILTRIGEGSKIIITG 153 (205)
T ss_dssp GG--HHHHH------HHHTTB-TT-EEEEEE
T ss_pred cCCCHHHHH------HHHcccCCCcEEEEec
Confidence 999988876 233 334456666654
No 246
>KOG2340|consensus
Probab=96.14 E-value=0.1 Score=64.20 Aligned_cols=74 Identities=26% Similarity=0.362 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCC---CCh--HHHHHHHHHHHHhhccc----------CC--C--------CCCC
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTG---AGK--TNVALLCMLQEIGKHIN----------AD--G--------TINA 534 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTG---SGK--T~a~lLpiL~~l~~~~~----------~~--g--------~~~~ 534 (1689)
..+|+.|.+.+..+. +-+|++. ||+ .|+ +-+|.|-+|+++.+.+. .. | ....
T Consensus 215 ~pltalQ~~L~~~m~-~YrDl~y--~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 215 EPLTALQKELFKIMF-NYRDLLY--PTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred CcchHHHHHHHHHHH-hhhhhcc--ccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 568999999997665 6788754 444 455 66788888988865421 00 0 1112
Q ss_pred CCeEEEEEccchhhhHhhhhcc
Q psy14582 535 DEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 535 ~~~kvl~laPtreLa~Qi~~~f 556 (1689)
..+++|+|+|+|+-|-.++..+
T Consensus 292 tRpkVLivvpfRe~A~riVn~l 313 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLL 313 (698)
T ss_pred CCceEEEEecchHHHHHHHHHH
Confidence 3589999999999999988554
No 247
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.12 E-value=0.59 Score=64.57 Aligned_cols=53 Identities=15% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
++.-+|.=-||||||+.-...+- .+... ...++++||+=.+.|-.|..+.|..
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~-~l~~~--------~~~~~v~fvvDR~dLd~Q~~~~f~~ 325 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLAR-LLLEL--------PKNPKVLFVVDRKDLDDQTSDEFQS 325 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHH-HHHhc--------cCCCeEEEEechHHHHHHHHHHHHH
Confidence 45689999999999998655542 23322 1446899999999999999987754
No 248
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.02 E-value=0.0026 Score=69.64 Aligned_cols=144 Identities=17% Similarity=0.281 Sum_probs=76.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHH
Q psy14582 918 RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLV 997 (1689)
Q Consensus 918 ~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~v 997 (1689)
++.+|||++|.+..+.+...+...... .++.++.. ...++..+
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----------------------------------~~~~v~~q--~~~~~~~~ 51 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEE-----------------------------------KGIPVFVQ--GSKSRDEL 51 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E------------------------------------ETSCEEES--TCCHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhccc-----------------------------------ccceeeec--CcchHHHH
Confidence 488999999999888877766542110 11122222 24567788
Q ss_pred HHHHhcCCeEEEEEcc--hhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCce-EEEece-eeecCCC
Q psy14582 998 EDLFADRHIQVLVSTA--TLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHT-VIIKGT-QIYNPEK 1073 (1689)
Q Consensus 998 e~~F~~g~i~VLVaT~--vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~-VII~gt-~~yd~~~ 1073 (1689)
.+.|+.+.-.||+|+. .+.+|+|+|+-.+ +.+|. .|+.+|... ..+... .+|+...
T Consensus 52 l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~---------------r~vii-----~glPfp~~~d~~~~~~~~~~~~~~ 111 (167)
T PF13307_consen 52 LEEFKRGEGAILLAVAGGSFSEGIDFPGDLL---------------RAVII-----VGLPFPPPSDPLVQAKREYLDKQG 111 (167)
T ss_dssp HHHHCCSSSEEEEEETTSCCGSSS--ECESE---------------EEEEE-----ES-----TTCHHHHHHHHHHHHCC
T ss_pred HHHHHhccCeEEEEEecccEEEeecCCCchh---------------heeee-----cCCCCCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999998 9999999986322 11132 577776441 111111 1222111
Q ss_pred C-----cceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhh
Q psy14582 1074 G-----RWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLN 1119 (1689)
Q Consensus 1074 ~-----~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 1119 (1689)
+ -+.+.....+.|-+||+=|.. +..|..+++-..=....|.+.+.
T Consensus 112 ~~~~~~~~~~~a~~~l~Qa~GR~iR~~-~D~g~i~llD~R~~~~~y~~~l~ 161 (167)
T PF13307_consen 112 KNPFRDWYLPPAIRKLKQAIGRLIRSE-DDYGVIILLDSRFLSKRYGKYLP 161 (167)
T ss_dssp TTCHHHHTHHHHHHHHHHHHHCC--ST-T-EEEEEEESGGGGGHHHHHH-T
T ss_pred ccchhhHhhHHHHHHHhhhcCcceecc-CCcEEEEEEcCccccchhhhcCc
Confidence 1 112334677899999999986 34566655544323344554433
No 249
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=95.73 E-value=0.011 Score=66.66 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=46.4
Q ss_pred ecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 743 VSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 743 ~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
+.+.|-..-....+++.+|||+|||.+++++++..+.... ...+.+++|++|+++|+.|.
T Consensus 26 Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~------~~~~~~viii~p~~~L~~q~ 85 (203)
T cd00268 26 QARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP------KKDGPQALILAPTRELALQI 85 (203)
T ss_pred HHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc------ccCCceEEEEcCCHHHHHHH
Confidence 4444444444667899999999999999999998876531 12467999999999999995
No 250
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.72 E-value=0.048 Score=61.33 Aligned_cols=64 Identities=25% Similarity=0.385 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHhcCCc-EEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhc
Q psy14582 481 TLNRIQSRLCKSALESDEN-LLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGN 555 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~n-vLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~ 555 (1689)
+||+-|.+++..++.++.+ +++++|-|+|||.+. -.+...+.. .+.++++++||...+.+....
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~----------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA----------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH----------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh----------CCCeEEEECCcHHHHHHHHHh
Confidence 4789999999999866655 578899999999753 334444443 346899999999888876544
No 251
>PRK09694 helicase Cas3; Provisional
Probab=95.67 E-value=0.32 Score=65.98 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=42.1
Q ss_pred hhHHHHh-hccc---ceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCC
Q psy14582 1030 TLVEDLF-ADRH---IQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQY 1096 (1689)
Q Consensus 1030 ~~~~~~f-~~g~---i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~ 1096 (1689)
..+++.| ++|. ..+||||.+++.|+|++...+| .. ..++..++||+||+||.+.
T Consensus 607 ~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId~DvlI-td------------laPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 607 QRVIENFGKNGKRNQGRILVATQVVEQSLDLDFDWLI-TQ------------LCPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHhcCCcCCCeEEEECcchhheeecCCCeEE-EC------------CCCHHHHHHHHhccCCCCC
Confidence 3567777 6666 4799999999999999987544 32 2457899999999999874
No 252
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=95.64 E-value=0.011 Score=64.08 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=40.5
Q ss_pred cccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 752 TILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 752 ~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
....+++.+|||+|||.++.++++..+... +..+++|++|+++|+.|..
T Consensus 13 ~~~~~li~aptGsGKT~~~~~~~l~~~~~~---------~~~~~lii~P~~~l~~q~~ 61 (169)
T PF00270_consen 13 SGKNVLISAPTGSGKTLAYILPALNRLQEG---------KDARVLIIVPTRALAEQQF 61 (169)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT---------SSSEEEEEESSHHHHHHHH
T ss_pred cCCCEEEECCCCCccHHHHHHHHHhhhccC---------CCceEEEEeeccccccccc
Confidence 345578999999999999999999887652 2349999999999999853
No 253
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.43 E-value=0.028 Score=64.22 Aligned_cols=74 Identities=26% Similarity=0.359 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHhcCCc-EEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 481 TLNRIQSRLCKSALESDEN-LLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~n-vLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
++|+-|.+|+..++ +... .+|.+|.|+|||-+..-.+ ..+..... ......+.++++++|+.+-+.++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~-~~~~~~~i~GpPGTGKT~~l~~~i-~~~~~~~~--~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSAL-SSNGITLIQGPPGTGKTTTLASII-AQLLQRFK--SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHC-TSSE-EEEE-STTSSHHHHHHHHH-HHH---------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH-cCCCCEEEECCCCCChHHHHHHHH-HHhccchh--hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 47899999999888 5566 8999999999995544333 33311000 00012456999999999999999877765
No 254
>KOG0351|consensus
Probab=95.39 E-value=0.27 Score=66.70 Aligned_cols=64 Identities=22% Similarity=0.385 Sum_probs=52.5
Q ss_pred CCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1022 PAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1022 p~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
+++.--.|..|+..|-+++++++|||-.+.+|+|-|..+-||. |.- +.++-=..-=+||+| +.|
T Consensus 517 AGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH----~~l---------Pks~E~YYQE~GRAG--RDG 580 (941)
T KOG0351|consen 517 AGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIH----YSL---------PKSFEGYYQEAGRAG--RDG 580 (941)
T ss_pred cCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEE----CCC---------chhHHHHHHhccccC--cCC
Confidence 4444458999999999999999999999999999999988874 321 677777777899998 666
No 255
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.25 E-value=0.023 Score=68.18 Aligned_cols=67 Identities=24% Similarity=0.238 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 482 LNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 482 ~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
+|+-|.+++.. ..++++|.|+-|||||.+.+.-++..+.... .+..+++++++|++.|.++...+..
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-------~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-------VPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-------STGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-------CChHHheecccCHHHHHHHHHHHHH
Confidence 58889999863 4799999999999999999888877776431 1334799999999999999876655
No 256
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=94.95 E-value=0.015 Score=54.84 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=48.5
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceec-CHHHHHHHhcccCCCC
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVEL-GALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~-s~~d~lQm~GRAGR~g 1095 (1689)
+.+..+|..+++.|+++..++||||..+++|+|+|.- ..-+.+ .+.++.++.-|+||.+
T Consensus 16 ~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~--------------~~vi~~~~~~~~~~~~Q~~GR~~ 75 (78)
T PF00271_consen 16 DMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDA--------------SHVIFYDPPWSPEEYIQRIGRAG 75 (78)
T ss_dssp TSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTE--------------SEEEESSSESSHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHhhccCceEEEeecccccccccccc--------------ccccccccCCCHHHHHHHhhcCC
Confidence 3444478999999999999999999999999999976 122334 4578999999999987
No 257
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=94.58 E-value=0.066 Score=70.71 Aligned_cols=68 Identities=24% Similarity=0.357 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
..+++.|..|+..++.+...+++.+|.|+|||....--+.+.+. .+.++++++||..-|.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~-----------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK-----------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH-----------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 35799999999999855578899999999999776554444333 234899999999999998877655
No 258
>PRK10536 hypothetical protein; Provisional
Probab=94.57 E-value=0.55 Score=54.60 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=76.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
++.-.|..|...+..+. ++..+++.+|+|+|||+.+....+..+... .-.++++.-|+.+.... .+.+.
T Consensus 56 ~i~p~n~~Q~~~l~al~-~~~lV~i~G~aGTGKT~La~a~a~~~l~~~---------~~~kIiI~RP~v~~ge~-LGfLP 124 (262)
T PRK10536 56 PILARNEAQAHYLKAIE-SKQLIFATGEAGCGKTWISAAKAAEALIHK---------DVDRIIVTRPVLQADED-LGFLP 124 (262)
T ss_pred cccCCCHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHHHHhcC---------CeeEEEEeCCCCCchhh-hCcCC
Confidence 45566888988887554 678899999999999999998888766431 11256666676655432 22221
Q ss_pred ccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceee-cCCCccccceeEEEEe
Q psy14582 558 KDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYF-DNSFRPVALEQQYIGV 636 (1689)
Q Consensus 558 kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~-~~~~r~~~l~~~~~~~ 636 (1689)
..-...+.-++..+...+... -....+..++.... ..+.+. -...|..++...++.+
T Consensus 125 --------G~~~eK~~p~~~pi~D~L~~~-------------~~~~~~~~~~~~~~-~~Iei~~l~ymRGrtl~~~~vIv 182 (262)
T PRK10536 125 --------GDIAEKFAPYFRPVYDVLVRR-------------LGASFMQYCLRPEI-GKVEIAPFAYMRGRTFENAVVIL 182 (262)
T ss_pred --------CCHHHHHHHHHHHHHHHHHHH-------------hChHHHHHHHHhcc-CcEEEecHHHhcCCcccCCEEEE
Confidence 111233333344433332211 00012222221110 111121 2245666777888888
Q ss_pred chhhHHHHHHHh
Q psy14582 637 TEKKALKRFQVM 648 (1689)
Q Consensus 637 ~~~~~l~~~~~~ 648 (1689)
.+..+++..++.
T Consensus 183 DEaqn~~~~~~k 194 (262)
T PRK10536 183 DEAQNVTAAQMK 194 (262)
T ss_pred echhcCCHHHHH
Confidence 888877776654
No 259
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=93.99 E-value=0.054 Score=64.87 Aligned_cols=167 Identities=14% Similarity=0.180 Sum_probs=138.6
Q ss_pred cchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCChHHHHHHHHHHhhCCCCCCCCCCChhHHHHHHHHHHHhccCC
Q psy14582 1228 CTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKVNILLQAYISQLKL 1307 (1689)
Q Consensus 1228 i~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~~E~~~l~~l~~~~p~~~~~~~~~~~~K~~~Llqa~is~~~l 1307 (1689)
+..-||..|...+....+..+||++||.|.||.++. | +.|..-.--|||.||.|-.-
T Consensus 227 vh~vT~~~f~~~~~~SlTlDelLslfasskElt~~~----------------p-------k~pk~~~ekll~dhlnr~~s 283 (610)
T COG5407 227 VHFVTMEMFYERIDGSLTLDELLSLFASSKELTRMN----------------P-------KGPKCTLEKLLGDHLNRARS 283 (610)
T ss_pred eeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHhC----------------C-------CCCchhHHHHHHHHHhHhhc
Confidence 567799999998888788999999999999986552 1 12333456689999999874
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC-CCccccCCCCCHHHHHHHHhcCC-Cc
Q psy14582 1308 EGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQS-MSPLRQFRKIPEEIIKKIEKKNF-PW 1385 (1689)
Q Consensus 1308 ~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~-~~pLrQ~~~i~~~~i~~~~~~~~-~~ 1385 (1689)
..|. -..|..++.-|++|+.+|+...+.+..+..++++-|+|+|++--+ ..|+.|+|+...+-++++.-++| ++
T Consensus 284 ~~fn----~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~I~~~ 359 (610)
T COG5407 284 VEFN----EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRLIEGM 359 (610)
T ss_pred ccch----heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhhhhhh
Confidence 4443 445778889999999999999999999999999999999999876 45999999999999888887777 78
Q ss_pred hhhccCChhhhhhhhcCChh--hHHHHHHHHhCCcceE
Q psy14582 1386 ERLYDLGPNEIGELIRVPKL--GKTIHKYVHQFPKLEL 1421 (1689)
Q Consensus 1386 ~~l~dl~~~el~~ll~~~~~--g~~i~~~~~~~P~l~l 1421 (1689)
..+..|.++..|+.+.+-.. .+.+.+.++.+|++.+
T Consensus 360 ~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~ 397 (610)
T COG5407 360 KAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFL 397 (610)
T ss_pred hhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEE
Confidence 89999999999999876543 4557888999999876
No 260
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.91 E-value=0.1 Score=62.18 Aligned_cols=64 Identities=27% Similarity=0.415 Sum_probs=50.0
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
.|..+++-|...+-.+.....|+|+|+.||||||- +|+.+.... .... |+|.+--|.||--++-
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT-----lLNal~~~i------~~~e-RvItiEDtaELql~~p 217 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-----LLNALSGFI------DSDE-RVITIEDTAELQLAHP 217 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-----HHHHHHhcC------CCcc-cEEEEeehhhhccCCC
Confidence 78899999999999999777799999999999995 344444332 2233 8999999999876553
No 261
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.73 E-value=0.13 Score=62.20 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhh
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLV 549 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa 549 (1689)
..+++.|...+..++..+.|+++++||||||| .++-.++..+... ....+++.+-.+.||.
T Consensus 131 g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~--------~~~~rivtIEd~~El~ 191 (319)
T PRK13894 131 GIMTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQ--------DPTERVFIIEDTGEIQ 191 (319)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhc--------CCCceEEEEcCCCccc
Confidence 34678899999888888999999999999999 5555555544311 1234788888888874
No 262
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=93.51 E-value=0.096 Score=68.34 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=39.4
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhh
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 810 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~ 810 (1689)
..+++.+|||+|||++|++|.+...... .+.++||++||++|+.|+++
T Consensus 17 ~~lliEA~TGtGKTlAYLlpal~~~~~~---------~~~rvlIstpT~~Lq~Ql~~ 64 (636)
T TIGR03117 17 RIGMLEASTGVGKTLAMIMAALTMLKER---------PDQKIAIAVPTLALMGQLWS 64 (636)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhc---------cCceEEEECCcHHHHHHHHH
Confidence 4477889999999999999998765421 25799999999999999653
No 263
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=93.45 E-value=0.067 Score=70.22 Aligned_cols=31 Identities=19% Similarity=0.136 Sum_probs=29.8
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCC
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPA 1058 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa 1058 (1689)
.|+..+.+|+++...++|||..+++|.|+|.
T Consensus 441 ~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l 471 (745)
T TIGR00963 441 EREAEIIAQAGRKGAVTIATNMAGRGTDIKL 471 (745)
T ss_pred HHHHHHHHhcCCCceEEEEeccccCCcCCCc
Confidence 7899999999999999999999999999997
No 264
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=93.39 E-value=0.063 Score=71.47 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=49.8
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCc-------------------------------------eEEEeceeeec
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAH-------------------------------------TVIIKGTQIYN 1070 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~-------------------------------------~VII~gt~~yd 1070 (1689)
+|.-+.++|+.|. |+|||..+++|.|+--- -.-|-||.+.+
T Consensus 482 Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhe 559 (896)
T PRK13104 482 EAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHE 559 (896)
T ss_pred HHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCc
Confidence 6788999999995 88999999999887632 11122454433
Q ss_pred CCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1071 PEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1071 ~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
. ..-=.|-.|||||-| .+|.+-.+.+-.+
T Consensus 560 s---------rRID~QLrGRaGRQG--DPGss~f~lSleD 588 (896)
T PRK13104 560 S---------RRIDNQLRGRAGRQG--DPGSSRFYLSLED 588 (896)
T ss_pred h---------HHHHHHhccccccCC--CCCceEEEEEcCc
Confidence 2 222349999999999 7888888776543
No 265
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=93.37 E-value=0.36 Score=65.09 Aligned_cols=50 Identities=28% Similarity=0.514 Sum_probs=39.0
Q ss_pred ceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhc
Q psy14582 755 PVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGN 811 (1689)
Q Consensus 755 pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~l 811 (1689)
-+++.||||.|||.+.+...+...... .....+++|+.|++.++.++.+.
T Consensus 216 ~~vl~aPTG~GKT~asl~~a~~~~~~~-------~~~~~r~i~vlP~~t~ie~~~~r 265 (733)
T COG1203 216 LVVLEAPTGYGKTEASLILALALLDEK-------IKLKSRVIYVLPFRTIIEDMYRR 265 (733)
T ss_pred cEEEEeCCCCChHHHHHHHHHHHhhcc-------ccccceEEEEccHHHHHHHHHHH
Confidence 467789999999999998877765432 12468999999999999886433
No 266
>KOG1803|consensus
Probab=93.05 E-value=0.16 Score=63.81 Aligned_cols=67 Identities=24% Similarity=0.376 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
+.+++-|.+|+..++....-.++.+|.|+|||..-..-|.+.+.+ +.++++.+||+.-+.-+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----------CCeEEEEcCchHHHHHHHHHhc
Confidence 568999999999888555556999999999999988877776653 3589999999999998887643
No 267
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.03 E-value=0.22 Score=60.17 Aligned_cols=61 Identities=26% Similarity=0.409 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhh
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLV 549 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa 549 (1689)
..+++.|...+..++..+.|+|+|++||||||-.. -.++..+... ..+.+++.+-.+.||.
T Consensus 127 g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~--------~~~~rivtiEd~~El~ 187 (323)
T PRK13833 127 KIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVAS--------APEDRLVILEDTAEIQ 187 (323)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcC--------CCCceEEEecCCcccc
Confidence 34678899888888888999999999999999654 3444544321 1234788887788875
No 268
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=92.43 E-value=0.13 Score=68.56 Aligned_cols=45 Identities=16% Similarity=0.400 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCC
Q psy14582 1324 ARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFR 1368 (1689)
Q Consensus 1324 ~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~~ 1368 (1689)
..+.|.++=-++-..|-......-.|-..|.-|-..-..||..+.
T Consensus 706 ~e~eR~i~L~~ID~~W~eHLd~Md~LRegI~LRsYgQKDPL~EYk 750 (790)
T PRK09200 706 NQFLRKVALKAIDQNWVEQVDALQQLKEGIGLRQYGQRNPIREYQ 750 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHH
Confidence 344455555556678998888888888888888888788886554
No 269
>KOG0329|consensus
Probab=92.34 E-value=0.21 Score=56.09 Aligned_cols=122 Identities=20% Similarity=0.226 Sum_probs=78.7
Q ss_pred CeEEEEEccchhhhHhhhhccc-ccchhhccCCCchHHHHHHHH--HHHHHhhcccCceEEEEeecCCCHH--HHHHHHh
Q psy14582 536 EFKIIYVAPMRSLVQEMVGNFG-KDEIHLLHDERGPVLEALIAR--TIRNIEATQEDVRLVGLSATLPNYK--DVATLLR 610 (1689)
Q Consensus 536 ~~kvl~laPtreLa~Qi~~~f~-kde~hll~de~g~~le~~~~~--~~~~~~~~~~~~q~v~~SAT~~~~~--~v~~~l~ 610 (1689)
.+.+++=.|-|-||.-.-..++ +...|+++|++|.|++.+-++ +..+.+..+..-|+++||||+++.- .+..|+.
T Consensus 161 ~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQ 240 (387)
T KOG0329|consen 161 CPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQ 240 (387)
T ss_pred CCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhc
Confidence 4578888888866654433333 245789999999999998665 4456678899999999999998654 3444543
Q ss_pred hCCCCCceeecCCCcccc---ceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEe
Q psy14582 611 IKPETGLFYFDNSFRPVA---LEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVST 669 (1689)
Q Consensus 611 ~~~~~~~~~~~~~~r~~~---l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~T 669 (1689)
.++.+|..+..... |+|+|+.+.+... |+..+ .++..+.-.|++|+.
T Consensus 241 ----dPmEi~vDdE~KLtLHGLqQ~YvkLke~eK-------Nrkl~-dLLd~LeFNQVvIFv 290 (387)
T KOG0329|consen 241 ----DPMEIFVDDEAKLTLHGLQQYYVKLKENEK-------NRKLN-DLLDVLEFNQVVIFV 290 (387)
T ss_pred ----CchhhhccchhhhhhhhHHHHHHhhhhhhh-------hhhhh-hhhhhhhhcceeEee
Confidence 55666655555444 4466666654322 22222 233344467888887
No 270
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.23 E-value=0.35 Score=58.13 Aligned_cols=61 Identities=26% Similarity=0.409 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhH
Q psy14582 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ 550 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~ 550 (1689)
.+++-|...+..++..+.|+++++|||||||-.. -.++..+... ..+.+++.+--+.||.-
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~--------~~~~ri~tiEd~~El~~ 176 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN--------DPTDRVVIIEDTRELQC 176 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc--------CCCceEEEECCchhhcC
Confidence 4667788888888878899999999999999664 3344544321 12348888888888753
No 271
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=92.16 E-value=0.61 Score=49.62 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=60.7
Q ss_pred eEeccCCCHHHHHHHHHHHhcCC-eEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCce-
Q psy14582 983 AIHHAGMTRVDRTLVEDLFADRH-IQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHT- 1060 (1689)
Q Consensus 983 ~~hHagl~~~dR~~ve~~F~~g~-i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~- 1060 (1689)
-+...+....+...+.+.|++.. -.||++|..+.+|+|+|+-.+- ..+..|+.+|...
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r--------------------~vii~glPfp~~~d 84 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLR--------------------AVIIDGLPFPYPDS 84 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCee--------------------EEEEEecCCCCCCC
Confidence 34455666666788888898654 3799999889999999975321 1223677776432
Q ss_pred EEEeceeee-cCC--CCcce----ecCHHHHHHHhcccCCCCCCCccEEEEE
Q psy14582 1061 VIIKGTQIY-NPE--KGRWV----ELGALDVLQMLGRAGRPQYDTKGEGVLI 1105 (1689)
Q Consensus 1061 VII~gt~~y-d~~--~~~~~----~~s~~d~lQm~GRAGR~g~d~~G~~iil 1105 (1689)
-+++....| +.. ...|. +.....+.|.+||+=|... ..|..+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~-D~g~i~l~ 135 (141)
T smart00492 85 PILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGAN-DYGVVVIA 135 (141)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcC-ceEEEEEE
Confidence 112211111 110 11122 2335778999999999874 45655544
No 272
>KOG0354|consensus
Probab=91.86 E-value=0.13 Score=66.93 Aligned_cols=100 Identities=21% Similarity=0.332 Sum_probs=71.2
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH------------------------
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM------------------------ 808 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~------------------------ 808 (1689)
.-++++.+|||+|||+++...++.++... +..|+|+++|++-|+.|.
T Consensus 76 gkNtii~lPTG~GKTfIAa~Vm~nh~rw~---------p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~~l~~~~~~~ 146 (746)
T KOG0354|consen 76 GKNTIIALPTGSGKTFIAAVIMKNHFEWR---------PKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTGQLGDTVPRS 146 (746)
T ss_pred cCCeEEEeecCCCccchHHHHHHHHHhcC---------CcceEEEeeCCchHHHHHHHHHhhccCcccceeeccCccCCC
Confidence 44678899999999999999998888664 348999999999999982
Q ss_pred ---------------------------------hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCC
Q psy14582 809 ---------------------------------VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATL 855 (1689)
Q Consensus 809 ---------------------------------v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl 855 (1689)
+.++||||+|.-..... +..++...+ .......||+|||||+
T Consensus 147 ~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~--Y~~Vmr~~l---~~k~~~~qILgLTASp 221 (746)
T KOG0354|consen 147 NRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHP--YNNIMREYL---DLKNQGNQILGLTASP 221 (746)
T ss_pred chhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccccccccc--HHHHHHHHH---HhhhccccEEEEecCC
Confidence 57899999997754322 222221111 1122334999999999
Q ss_pred C-CHHHHHHHhh
Q psy14582 856 P-NYKDVATLLR 866 (1689)
Q Consensus 856 ~-n~~dva~~L~ 866 (1689)
. +.+++...+.
T Consensus 222 G~~~~~v~~~I~ 233 (746)
T KOG0354|consen 222 GSKLEQVQNVID 233 (746)
T ss_pred CccHHHHHHHHH
Confidence 9 4555555443
No 273
>KOG1802|consensus
Probab=91.58 E-value=0.33 Score=61.25 Aligned_cols=70 Identities=24% Similarity=0.307 Sum_probs=57.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
+..++|.-|..|+..+| +..=.|+.+|.|+|||.+..--+.+.+.++ +..++++||..--+.|+.+.+.
T Consensus 407 ~lpkLN~SQ~~AV~~VL-~rplsLIQGPPGTGKTvtsa~IVyhl~~~~----------~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 407 NLPKLNASQSNAVKHVL-QRPLSLIQGPPGTGKTVTSATIVYHLARQH----------AGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred CchhhchHHHHHHHHHH-cCCceeeecCCCCCceehhHHHHHHHHHhc----------CCceEEEcccchhHHHHHHHHH
Confidence 88899999999999999 556679999999999999776666655543 3479999999999998876654
Q ss_pred c
Q psy14582 558 K 558 (1689)
Q Consensus 558 k 558 (1689)
+
T Consensus 476 ~ 476 (935)
T KOG1802|consen 476 K 476 (935)
T ss_pred h
Confidence 4
No 274
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=91.47 E-value=0.2 Score=66.85 Aligned_cols=43 Identities=19% Similarity=0.098 Sum_probs=35.9
Q ss_pred ceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 755 PVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 755 pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
.++..++||+|||+++.+|++..+.. +..+++++|+++||.|.
T Consensus 109 gvIAeaqTGeGKTLAf~LP~l~~aL~-----------g~~v~IVTpTrELA~Qd 151 (970)
T PRK12899 109 GFITEMQTGEGKTLTAVMPLYLNALT-----------GKPVHLVTVNDYLAQRD 151 (970)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHhh-----------cCCeEEEeCCHHHHHHH
Confidence 47788999999999999999987643 22488999999999994
No 275
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=91.20 E-value=0.58 Score=61.61 Aligned_cols=95 Identities=23% Similarity=0.331 Sum_probs=67.0
Q ss_pred cEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc--------------------
Q psy14582 499 NLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK-------------------- 558 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k-------------------- 558 (1689)
=.++.||.|||||-+..-++-..+. ..+.++++|+..++|+.+....|..
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~----------~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~ 120 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALK----------NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGR 120 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhcc----------CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccccccc
Confidence 3589999999999877555433322 1456999999999999999877643
Q ss_pred -----------------cc----hhhccCCCchHHHHHHHHHHHHH--------hhcccCceEEEEeecCCCHH
Q psy14582 559 -----------------DE----IHLLHDERGPVLEALIARTIRNI--------EATQEDVRLVGLSATLPNYK 603 (1689)
Q Consensus 559 -----------------de----~hll~de~g~~le~~~~~~~~~~--------~~~~~~~q~v~~SAT~~~~~ 603 (1689)
.. -.++.||.-..+...+++.++.. ........++++-|++...-
T Consensus 121 ~~~rLivqIdSL~R~~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~t 194 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQT 194 (824)
T ss_pred ccCeEEEEehhhhhcccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHH
Confidence 00 11566888888888887765443 12345678999999998543
No 276
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.17 E-value=1.1 Score=60.99 Aligned_cols=79 Identities=10% Similarity=0.147 Sum_probs=53.0
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHH
Q psy14582 916 AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRT 995 (1689)
Q Consensus 916 ~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~ 995 (1689)
..++||.|.|||-=-|+.-.+.+.++... ++-.|+....=-+.++..
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~---------------------------------fPV~I~~LSRF~s~kE~~ 687 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAG---------------------------------FPVRIEVLSRFRSAKEQK 687 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcC---------------------------------CCeeEEEecccCCHHHHH
Confidence 45799999999977666666666553211 122233334445678888
Q ss_pred HHHHHHhcCCeEEEEEcc-hhccCCCCCCccee
Q psy14582 996 LVEDLFADRHIQVLVSTA-TLAWGVNLPAHTVV 1027 (1689)
Q Consensus 996 ~ve~~F~~g~i~VLVaT~-vl~rGIDIp~V~~V 1027 (1689)
.+.+..++|.++|+|+|. ++..++-+.++.++
T Consensus 688 ~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLl 720 (1139)
T COG1197 688 EILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLL 720 (1139)
T ss_pred HHHHHHhcCCccEEEechHhhCCCcEEecCCeE
Confidence 899999999999999994 55556666555555
No 277
>KOG0392|consensus
Probab=91.07 E-value=0.79 Score=61.72 Aligned_cols=114 Identities=19% Similarity=0.291 Sum_probs=73.1
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.++++||||.=+....-+.+.|...-... +. ..-..|..++.+|..
T Consensus 1339 sqHRiLIFcQlK~mlDlVekDL~k~~mps-----------------------Vt-----------ymRLDGSVpp~~R~k 1384 (1549)
T KOG0392|consen 1339 SQHRILIFCQLKSMLDLVEKDLFKKYMPS-----------------------VT-----------YMRLDGSVPPGDRQK 1384 (1549)
T ss_pred ccceeEEeeeHHHHHHHHHHHHhhhhcCc-----------------------ee-----------EEEecCCCCcHHHHH
Confidence 35789999998888877777765421111 10 112378999999999
Q ss_pred HHHHHhcC-CeEEEE-EcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCC
Q psy14582 997 VEDLFADR-HIQVLV-STATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 1074 (1689)
Q Consensus 997 ve~~F~~g-~i~VLV-aT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~ 1074 (1689)
+.+.|.++ .|+||+ +|.|.+-|++.-+ |+|||+. .|
T Consensus 1385 iV~~FN~DptIDvLlLTThVGGLGLNLTG----------------------------------ADTVVFv--------EH 1422 (1549)
T KOG0392|consen 1385 IVERFNEDPTIDVLLLTTHVGGLGLNLTG----------------------------------ADTVVFV--------EH 1422 (1549)
T ss_pred HHHHhcCCCceeEEEEeeeccccccccCC----------------------------------CceEEEE--------ec
Confidence 99999999 898863 4455555555554 4455544 34
Q ss_pred cceecCHHHHHHHhcccCCCCCCCccEEEEEecCC
Q psy14582 1075 RWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS 1109 (1689)
Q Consensus 1075 ~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~ 1109 (1689)
-|-|+. =+|-+-||-|-|--+.=.++-+.+..
T Consensus 1423 DWNPMr---DLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1423 DWNPMR---DLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred CCCchh---hHHHHHHHHhhcCceeeeeeeehhcc
Confidence 454433 37888888887744444555555443
No 278
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=90.98 E-value=0.25 Score=67.90 Aligned_cols=46 Identities=22% Similarity=0.167 Sum_probs=38.2
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
...+.+.||||+|||+++++|++.... .+.++||.+||++|..|++
T Consensus 264 ~~~~~~eA~TG~GKT~ayLlp~~~~~~-----------~~~~vvi~t~t~~Lq~Ql~ 309 (850)
T TIGR01407 264 SEKSLIEAPTGTGKTLGYLLPALYYAI-----------TEKPVVISTNTKVLQSQLL 309 (850)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHHhc-----------CCCeEEEEeCcHHHHHHHH
Confidence 456788999999999999999877543 1458999999999999953
No 279
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=90.95 E-value=0.14 Score=61.15 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=39.7
Q ss_pred ccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 751 ETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 751 e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
...-++++.+|||+|||+++++|++..+...... ..+.+++|.++|..+..|.
T Consensus 25 ~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~ 77 (289)
T smart00489 25 DRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKR 77 (289)
T ss_pred HcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHH
Confidence 4456789999999999999999998765432100 0235899999999987764
No 280
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=90.95 E-value=0.14 Score=61.15 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=39.7
Q ss_pred ccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 751 ETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 751 e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
...-++++.+|||+|||+++++|++..+...... ..+.+++|.++|..+..|.
T Consensus 25 ~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~ 77 (289)
T smart00488 25 DRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKR 77 (289)
T ss_pred HcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHH
Confidence 4456789999999999999999998765432100 0235899999999987764
No 281
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.80 E-value=0.65 Score=56.14 Aligned_cols=61 Identities=25% Similarity=0.389 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhH
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ 550 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~ 550 (1689)
.+..+++.|.+-+-.++..++++++|++||||||-. +.+++..+- ...|++.+-=|.++.-
T Consensus 124 ~~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip-----------~~~rivtIEdt~E~~~ 184 (312)
T COG0630 124 EYGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIP-----------PEERIVTIEDTPELKL 184 (312)
T ss_pred hcCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCC-----------chhcEEEEeccccccC
Confidence 477889999888888888999999999999999953 444444332 2347777777766653
No 282
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=90.75 E-value=0.29 Score=66.62 Aligned_cols=45 Identities=27% Similarity=0.297 Sum_probs=38.0
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
.-.+++.||||+|||++|++|++... .+.++|+.+||++|+.|++
T Consensus 264 ~~~~~~eA~tGtGKT~ayllp~l~~~------------~~~~vvI~t~T~~Lq~Ql~ 308 (820)
T PRK07246 264 GPASFIEAQTGIGKTYGYLLPLLAQS------------DQRQIIVSVPTKILQDQIM 308 (820)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHhc------------CCCcEEEEeCcHHHHHHHH
Confidence 45578899999999999999987743 2468999999999999963
No 283
>KOG0384|consensus
Probab=90.69 E-value=0.87 Score=61.54 Aligned_cols=111 Identities=22% Similarity=0.194 Sum_probs=77.1
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.+++||||..-.+--.-++.+|....+.-..+ .|++...-|..
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRL-------------------------------------DGsvrgelRq~ 740 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRL-------------------------------------DGSVRGELRQQ 740 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceec-------------------------------------cCCcchHHHHH
Confidence 46899999887777777777777644332222 78889999999
Q ss_pred HHHHHhcC---CeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCC-CceEEEeceeeecCC
Q psy14582 997 VEDLFADR---HIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLP-AHTVIIKGTQIYNPE 1072 (1689)
Q Consensus 997 ve~~F~~g---~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLP-a~~VII~gt~~yd~~ 1072 (1689)
.++-|..- ..-.| .||..-..||||- |.||||.+.
T Consensus 741 AIDhFnap~SddFvFL-----------------------------------LSTRAGGLGINLatADTVIIFDS------ 779 (1373)
T KOG0384|consen 741 AIDHFNAPDSDDFVFL-----------------------------------LSTRAGGLGINLATADTVIIFDS------ 779 (1373)
T ss_pred HHHhccCCCCCceEEE-----------------------------------EecccCcccccccccceEEEeCC------
Confidence 99999754 44555 5555555666655 678887543
Q ss_pred CCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1073 KGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1073 ~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
|-.|+.=+|-.-||-|-|--..=.+|-+++.+.
T Consensus 780 -----DWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 780 -----DWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred -----CCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 234666678888888888556667777777643
No 284
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=90.64 E-value=0.43 Score=63.49 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=48.6
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCC
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRP 1094 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~ 1094 (1689)
...-+|..+++.|+.|.++++|||..|+.|+++|...+|| .||.+ ..--+.+....+.|+||.
T Consensus 480 ~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVi----i~d~e----ifG~~~~~~~yiqr~GR~ 542 (652)
T PRK05298 480 IDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVA----ILDAD----KEGFLRSERSLIQTIGRA 542 (652)
T ss_pred CCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEE----EeCCc----ccccCCCHHHHHHHhccc
Confidence 3444788999999999999999999999999999887665 24432 011245778899999993
No 285
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=90.33 E-value=0.38 Score=64.31 Aligned_cols=68 Identities=24% Similarity=0.160 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
.||+-|.+|+. ..+.+++|.|+-|||||.+...-+...+... | .+..++++++.||..|.++.+.+.+
T Consensus 2 ~Ln~~Q~~av~---~~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~----~---v~p~~IL~lTFT~kAA~em~~Rl~~ 69 (672)
T PRK10919 2 RLNPGQQQAVE---FVTGPCLVLAGAGSGKTRVITNKIAHLIRGC----G---YQARHIAAVTFTNKAAREMKERVAQ 69 (672)
T ss_pred CCCHHHHHHHh---CCCCCEEEEecCCCCHHHHHHHHHHHHHHhc----C---CCHHHeeeEechHHHHHHHHHHHHH
Confidence 48999999984 2468899999999999999877776666432 1 1234799999999999998866643
No 286
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.30 E-value=0.35 Score=58.98 Aligned_cols=53 Identities=25% Similarity=0.442 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhH
Q psy14582 486 QSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ 550 (1689)
Q Consensus 486 Q~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~ 550 (1689)
....+..+...+.|+++++|||||||-.. -.++..+- ...+++.+-.+.||..
T Consensus 151 ~~~~l~~~v~~~~nilI~G~tGSGKTTll-~aLl~~i~-----------~~~rivtiEd~~El~l 203 (344)
T PRK13851 151 LEAFLHACVVGRLTMLLCGPTGSGKTTMS-KTLISAIP-----------PQERLITIEDTLELVI 203 (344)
T ss_pred HHHHHHHHHHcCCeEEEECCCCccHHHHH-HHHHcccC-----------CCCCEEEECCCccccC
Confidence 34555666778999999999999999653 33333332 2236788888888753
No 287
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=90.07 E-value=0.38 Score=63.63 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCC
Q psy14582 1328 RAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFR 1368 (1689)
Q Consensus 1328 ~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~~ 1368 (1689)
|-++=-..-..|.......-.|.+.|..|...-.+||.+..
T Consensus 715 r~v~l~~iD~~W~ehl~~md~Lr~~I~lR~y~qk~Pl~eyk 755 (822)
T COG0653 715 RYVMLQVLDYLWREHLDAMDALREGIHLRGYAQKDPLIEYK 755 (822)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhHHhccCChHHHHH
Confidence 33333345568888888888888888888888888886655
No 288
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=89.91 E-value=0.47 Score=51.91 Aligned_cols=43 Identities=35% Similarity=0.434 Sum_probs=33.9
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
...+.+.+|||+|||++.+..+.+.. .++++++|++.|+.|..
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~~l~--------------~~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALILELA--------------RKVLIVAPNISLLEQWY 67 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHHHHH--------------CEEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCcChhhhhhhhccc--------------cceeEecCHHHHHHHHH
Confidence 34578889999999999885444432 18999999999999954
No 289
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=89.69 E-value=3.8 Score=49.36 Aligned_cols=158 Identities=19% Similarity=0.212 Sum_probs=89.0
Q ss_pred CCCCCCHHHHHHHHHHHhcCCc-EEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 478 DFKTLNRIQSRLCKSALESDEN-LLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~n-vLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
|+.-.+..|.-|+...++..-+ |.+.++-|||||+-|+.+.|.+...... --|+|+.=|+.++.+++- .+
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~--------y~KiiVtRp~vpvG~dIG-fL 295 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR--------YRKIIVTRPTVPVGEDIG-FL 295 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh--------hceEEEecCCcCcccccC-cC
Confidence 8888899999999887754333 4688999999999999988876654321 127888888888886652 11
Q ss_pred cccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCcee-ecCCCccccceeEEEE
Q psy14582 557 GKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFY-FDNSFRPVALEQQYIG 635 (1689)
Q Consensus 557 ~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~-~~~~~r~~~l~~~~~~ 635 (1689)
-- . .-..+.-+...+...++... |..-+..+.+...+.... +.+ --...|.-.+.+.++.
T Consensus 296 PG-------~-eEeKm~PWmq~i~DnLE~L~--------~~~~~~~~~l~~~l~~~~---iev~alt~IRGRSl~~~FiI 356 (436)
T COG1875 296 PG-------T-EEEKMGPWMQAIFDNLEVLF--------SPNEPGDRALEEILSRGR---IEVEALTYIRGRSLPDSFII 356 (436)
T ss_pred CC-------c-hhhhccchHHHHHhHHHHHh--------cccccchHHHHHHHhccc---eeeeeeeeecccccccceEE
Confidence 10 0 00111111111111111100 000011112222221111 111 1233455567788999
Q ss_pred echhhHHHHHHHhhhhHHHHHHhhccccceEEEe
Q psy14582 636 VTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVST 669 (1689)
Q Consensus 636 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~T 669 (1689)
+.+..++++.++. .+..-+|...=||+|
T Consensus 357 IDEaQNLTpheik------TiltR~G~GsKIVl~ 384 (436)
T COG1875 357 IDEAQNLTPHELK------TILTRAGEGSKIVLT 384 (436)
T ss_pred EehhhccCHHHHH------HHHHhccCCCEEEEc
Confidence 9999999998887 555556666666666
No 290
>KOG0353|consensus
Probab=88.76 E-value=14 Score=44.08 Aligned_cols=102 Identities=21% Similarity=0.301 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceee
Q psy14582 989 MTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQI 1068 (1689)
Q Consensus 989 l~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~ 1068 (1689)
+++.|-+.|-..+++--|.. |--..++.-++|..+-|..-.|++.++|+|-.+.+|++-|..+.||..
T Consensus 325 ~sq~d~ekva~alkn~gi~a---------~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihh--- 392 (695)
T KOG0353|consen 325 FSQKDCEKVAKALKNHGIHA---------GAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHH--- 392 (695)
T ss_pred eccccHHHHHHHHHhcCccc---------cccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEec---
Confidence 34555566666555433221 222234445567777788889999999999999999999999888753
Q ss_pred ecCCCCcceecCHHHHHH-------------------------------------------HhcccCCCCCCCccEEEEE
Q psy14582 1069 YNPEKGRWVELGALDVLQ-------------------------------------------MLGRAGRPQYDTKGEGVLI 1105 (1689)
Q Consensus 1069 yd~~~~~~~~~s~~d~lQ-------------------------------------------m~GRAGR~g~d~~G~~iil 1105 (1689)
..+-|+..|.| -.|||||.+ ....||++
T Consensus 393 -------sl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~--~~a~cily 463 (695)
T KOG0353|consen 393 -------SLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD--MKADCILY 463 (695)
T ss_pred -------ccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC--CcccEEEE
Confidence 23456778888 679999976 67888888
Q ss_pred ecCCcH
Q psy14582 1106 TNHSEL 1111 (1689)
Q Consensus 1106 ~~~~~~ 1111 (1689)
..-.+.
T Consensus 464 y~~~di 469 (695)
T KOG0353|consen 464 YGFADI 469 (695)
T ss_pred echHHH
Confidence 765443
No 291
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.68 E-value=0.66 Score=56.55 Aligned_cols=52 Identities=27% Similarity=0.361 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhH
Q psy14582 487 SRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ 550 (1689)
Q Consensus 487 ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~ 550 (1689)
...+..++..+.|+++|+|||||||-.. -.++..+- ...+++.+--+.||..
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll-~aL~~~ip-----------~~~ri~tiEd~~El~l 201 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFT-NAALREIP-----------AIERLITVEDAREIVL 201 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHH-HHHHhhCC-----------CCCeEEEecCCCcccc
Confidence 3455566668999999999999999643 33444332 2247777766777653
No 292
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=88.61 E-value=0.48 Score=62.00 Aligned_cols=41 Identities=17% Similarity=0.057 Sum_probs=35.2
Q ss_pred eEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 757 SFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 757 ~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
+..+.||+|||+++.+|++..... +..+++++|+++||.|.
T Consensus 120 Iae~~TGeGKTla~~lp~~~~al~-----------G~~v~VvTptreLA~qd 160 (656)
T PRK12898 120 LAEMQTGEGKTLTATLPAGTAALA-----------GLPVHVITVNDYLAERD 160 (656)
T ss_pred eeeeeCCCCcHHHHHHHHHHHhhc-----------CCeEEEEcCcHHHHHHH
Confidence 556889999999999999876532 57899999999999984
No 293
>PRK11054 helD DNA helicase IV; Provisional
Probab=88.50 E-value=0.84 Score=60.87 Aligned_cols=69 Identities=26% Similarity=0.259 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
..+|+-|.+|+- . ...+++|.|.-|||||.+.+--+...+.... ..+-++++++.||..|.++.+.+..
T Consensus 195 ~~L~~~Q~~av~--~-~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-------~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVV--N-GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ-------AQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHh--C-CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-------CCHHHeEEEeccHHHHHHHHHHHHH
Confidence 479999999984 2 4578899999999999998776655554321 1345899999999999998876644
No 294
>KOG0923|consensus
Probab=88.32 E-value=8 Score=49.62 Aligned_cols=135 Identities=21% Similarity=0.270 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc--------
Q psy14582 487 SRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK-------- 558 (1689)
Q Consensus 487 ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k-------- 558 (1689)
.+.+ .|.+...=+|+.+.||||||-- +| +.|... | ....+.++-+.-|-|--|..+...+..
T Consensus 271 dell-~av~e~QVLiI~GeTGSGKTTQ--iP--QyL~Ea----G-ytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923|consen 271 DELL-KAVKEHQVLIIVGETGSGKTTQ--IP--QYLYEA----G-YTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred HHHH-HHHHhCcEEEEEcCCCCCcccc--cc--HHHHhc----c-cccCCceEeecCcchHHHHHHHHHHHHHhCccccc
Confidence 3444 3555667789999999999963 33 333321 2 223445577778888666554332221
Q ss_pred ---------------------------cc-------hh---hccC---CCchHHHHHHHHHHHHHhhcccCceEEEEeec
Q psy14582 559 ---------------------------DE-------IH---LLHD---ERGPVLEALIARTIRNIEATQEDVRLVGLSAT 598 (1689)
Q Consensus 559 ---------------------------de-------~h---ll~d---e~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT 598 (1689)
+| .. ++.| ||--.-+.+|.-+ ..|....+....+.-|||
T Consensus 341 eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLv-KDIar~RpdLKllIsSAT 419 (902)
T KOG0923|consen 341 EVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLV-KDIARFRPDLKLLISSAT 419 (902)
T ss_pred ccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHH-HHHHhhCCcceEEeeccc
Confidence 01 00 2333 3333444444433 334455688999999999
Q ss_pred CCCHHHHHHHHhhCCCCCceeecCCCccccceeEEEEech
Q psy14582 599 LPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTE 638 (1689)
Q Consensus 599 ~~~~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~ 638 (1689)
+. ...+.+|+. .+.+|....|.-|...+|-..++
T Consensus 420 ~D-AekFS~fFD-----dapIF~iPGRRyPVdi~Yt~~PE 453 (902)
T KOG0923|consen 420 MD-AEKFSAFFD-----DAPIFRIPGRRYPVDIFYTKAPE 453 (902)
T ss_pred cC-HHHHHHhcc-----CCcEEeccCcccceeeecccCCc
Confidence 74 567777763 44566666776666656555544
No 295
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=88.03 E-value=0.65 Score=62.75 Aligned_cols=69 Identities=26% Similarity=0.249 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
..|||-|.+++. ..+.+++|.|.-|||||-+...=+...+... + .+..++++|+.|+..|.++.+.+.+
T Consensus 3 ~~Ln~~Q~~av~---~~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~----~---v~p~~IL~lTFTnkAA~em~~Rl~~ 71 (715)
T TIGR01075 3 DGLNDKQREAVA---APPGNLLVLAGAGSGKTRVLTHRIAWLLSVE----N---ASPHSIMAVTFTNKAAAEMRHRIGA 71 (715)
T ss_pred cccCHHHHHHHc---CCCCCEEEEecCCCCHHHHHHHHHHHHHHcC----C---CCHHHeEeeeccHHHHHHHHHHHHH
Confidence 468999999984 2467999999999999999766665555421 1 1335899999999999998866643
No 296
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=87.99 E-value=0.69 Score=62.55 Aligned_cols=69 Identities=23% Similarity=0.245 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
..|||-|.+|+. ....+++|.|.-|||||.+-..=+...+... | .+..++++|+-|+..|.++.+.+.+
T Consensus 8 ~~Ln~~Q~~av~---~~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~----~---v~p~~IL~lTFT~kAA~Em~~Rl~~ 76 (721)
T PRK11773 8 DSLNDKQREAVA---APLGNMLVLAGAGSGKTRVLVHRIAWLMQVE----N---ASPYSIMAVTFTNKAAAEMRHRIEQ 76 (721)
T ss_pred HhcCHHHHHHHh---CCCCCEEEEecCCCCHHHHHHHHHHHHHHcC----C---CChhHeEeeeccHHHHHHHHHHHHH
Confidence 468999999984 2467999999999999999776666555421 1 1334899999999999998876643
No 297
>KOG0922|consensus
Probab=87.33 E-value=5.5 Score=51.37 Aligned_cols=127 Identities=25% Similarity=0.373 Sum_probs=73.3
Q ss_pred HHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccch----hhhHhhhhcccc----------
Q psy14582 493 ALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR----SLVQEMVGNFGK---------- 558 (1689)
Q Consensus 493 al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtr----eLa~Qi~~~f~k---------- 558 (1689)
+++++.-+|+.++||||||-- +| +.|... |.. ..| ++.+.=|-| +||..+..+..-
T Consensus 62 ~ve~nqvlIviGeTGsGKSTQ--ip--QyL~ea----G~~-~~g-~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~I 131 (674)
T KOG0922|consen 62 AVEDNQVLIVIGETGSGKSTQ--IP--QYLAEA----GFA-SSG-KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTI 131 (674)
T ss_pred HHHHCCEEEEEcCCCCCcccc--Hh--HHHHhc----ccc-cCC-cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEE
Confidence 455778899999999999953 22 333322 111 122 366667766 445544433221
Q ss_pred ---------------------cchh----------hccCC---CchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHH
Q psy14582 559 ---------------------DEIH----------LLHDE---RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKD 604 (1689)
Q Consensus 559 ---------------------de~h----------ll~de---~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~ 604 (1689)
+|+- ++.|| |--.-+.++.- ++.+-...+..+++.+|||+. ...
T Consensus 132 RFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGl-LKki~~~R~~LklIimSATld-a~k 209 (674)
T KOG0922|consen 132 RFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGL-LKKILKKRPDLKLIIMSATLD-AEK 209 (674)
T ss_pred EecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHH-HHHHHhcCCCceEEEEeeeec-HHH
Confidence 1111 34443 33333444443 334445566799999999985 567
Q ss_pred HHHHHhhCCCCCceeecCCCccccceeEEEEe
Q psy14582 605 VATLLRIKPETGLFYFDNSFRPVALEQQYIGV 636 (1689)
Q Consensus 605 v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~ 636 (1689)
+.+|. .++.++....|..|++..|..-
T Consensus 210 fS~yF-----~~a~i~~i~GR~fPVei~y~~~ 236 (674)
T KOG0922|consen 210 FSEYF-----NNAPILTIPGRTFPVEILYLKE 236 (674)
T ss_pred HHHHh-----cCCceEeecCCCCceeEEeccC
Confidence 77776 4456677777777776666653
No 298
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=87.20 E-value=0.92 Score=46.47 Aligned_cols=44 Identities=32% Similarity=0.497 Sum_probs=34.9
Q ss_pred eeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 756 VSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 756 v~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
+.+..|+|+|||...+..+...... ....+++|++|++.++.|.
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~~~~~---------~~~~~~lv~~p~~~l~~~~ 46 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDS---------LKGGQVLVLAPTRELANQV 46 (144)
T ss_pred EEEECCCCCchhHHHHHHHHHHHhc---------ccCCCEEEEcCcHHHHHHH
Confidence 4677899999999988777665533 1357899999999999884
No 299
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=87.08 E-value=0.49 Score=48.57 Aligned_cols=60 Identities=28% Similarity=0.283 Sum_probs=48.0
Q ss_pred eehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1027 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1027 V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
.+|..+.+.|+.+...+|+||..+++|+|+|.. ..-...-.+.+...+.-+.||.+ +.|.
T Consensus 65 ~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~-------------~~vi~~~~~~~~~~~~Q~~GR~~--R~~~ 124 (131)
T cd00079 65 EEREEVLKDFREGEIVVLVATDVIARGIDLPNV-------------SVVINYDLPWSPSSYLQRIGRAG--RAGQ 124 (131)
T ss_pred HHHHHHHHHHHcCCCcEEEEcChhhcCcChhhC-------------CEEEEeCCCCCHHHheecccccc--cCCC
Confidence 467889999999999999999999999999944 12233456677788999999987 7664
No 300
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=86.70 E-value=0.92 Score=64.75 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccccc
Q psy14582 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKD 559 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~kd 559 (1689)
++|+-|.+++. ..++|++|.|.-|||||.+.+--+++.+... . +--++++|+=|++-|.++..++.+.
T Consensus 1 ~~t~~Q~~ai~---~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~------~--~~~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 1 QWTDEQWQAIY---TRGQNILVSASAGSGKTAVLVERIIKKILRG------V--DIDRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCCHHHHHHHh---CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC------C--CHhhEEEEeccHHHHHHHHHHHHHH
Confidence 36899999985 3689999999999999999988888777532 1 1136999999999999988776653
No 301
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=86.22 E-value=4 Score=55.29 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=37.3
Q ss_pred cccCCCCCHHHHHHHHhcCCCchhhccCChhhhhhhhcCChhhHHHHHHHHh
Q psy14582 1364 LRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQ 1415 (1689)
Q Consensus 1364 LrQ~~~i~~~~i~~~~~~~~~~~~l~dl~~~el~~ll~~~~~g~~i~~~~~~ 1415 (1689)
|+.|||+++..++++-.+=-++.++..++.+|+.++++.++.|+.|+++++.
T Consensus 759 L~~lPgI~~~~a~~ll~~f~si~~l~~as~eeL~~~iG~~~~A~~i~~fl~~ 810 (814)
T TIGR00596 759 LLKLPGVTKKNYRNLRKKVKSIRELAKLSQNELNELIGDEEAAKRLYDFLRT 810 (814)
T ss_pred HHHCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHHHHhCCHHHHHHHHHHhcc
Confidence 5677888887777765543367777777777777777766777777777764
No 302
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=85.97 E-value=3.5 Score=55.82 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhh
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 554 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~ 554 (1689)
..+++-|..|+..++.+++-+++.++.|+|||...-. +...+.. .+.++++++||---|..+.+
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~----------~g~~V~~~ApTg~Aa~~L~~ 414 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEA----------AGYRVIGAALSGKAAEGLQA 414 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHh----------CCCeEEEEeCcHHHHHHHHh
Confidence 4589999999998885456779999999999966332 3333322 34689999999877776643
No 303
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=85.96 E-value=1.2 Score=59.92 Aligned_cols=68 Identities=24% Similarity=0.123 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
.|||-|.+++. ..+.+++|.|+-|||||.+-.--+...+.... ....++++|+.|+.-|.++...+.+
T Consensus 1 ~Ln~~Q~~av~---~~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-------~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 1 KLNPQQQEAVE---YVTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-------YKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCCHHHHHHHh---CCCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------CCHHHeEEEeccHHHHHHHHHHHHH
Confidence 37999999874 24689999999999999998877777664321 1234799999999999998866643
No 304
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=85.92 E-value=1.2 Score=49.31 Aligned_cols=49 Identities=29% Similarity=0.571 Sum_probs=32.1
Q ss_pred HhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhh
Q psy14582 494 LESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 554 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~ 554 (1689)
++.++|+++.+|||+|||..+..-+-..+. .+..++| .++.+|..++..
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-----------~g~~v~f-~~~~~L~~~l~~ 92 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR-----------KGYSVLF-ITASDLLDELKQ 92 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH-----------TT--EEE-EEHHHHHHHHHC
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc-----------CCcceeE-eecCceeccccc
Confidence 356899999999999999997665544333 2345666 567788887764
No 305
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=85.91 E-value=0.95 Score=50.46 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHH
Q psy14582 479 FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 479 ~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~ 514 (1689)
...+++-|...+..++..|+++++++|||||||-..
T Consensus 7 ~g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 7 QGTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 455788888999888889999999999999999764
No 306
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=85.70 E-value=12 Score=44.71 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=53.7
Q ss_pred ccCCCHHHHHHHHHHHhcCCeEEEEEcch---------hccCCCCCCccee-----ehhhHHHHhhcccceEEEEccccc
Q psy14582 986 HAGMTRVDRTLVEDLFADRHIQVLVSTAT---------LAWGVNLPAHTVV-----DRTLVEDLFADRHIQVLVSTATLA 1051 (1689)
Q Consensus 986 Hagl~~~dR~~ve~~F~~g~i~VLVaT~v---------l~rGIDIp~V~~V-----~R~~~~~~f~~g~i~vLVaT~TLa 1051 (1689)
...++..-...+++.-+.|.--.++...+ +..+++.-.+..| .|..-.++||+|++++|++|+.|+
T Consensus 287 r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTTILE 366 (441)
T COG4098 287 RNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITTTILE 366 (441)
T ss_pred hccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEeehhh
Confidence 34566666677777777776555554432 2245554444455 788889999999999999999999
Q ss_pred ccCCCCCc
Q psy14582 1052 WGVNLPAH 1059 (1689)
Q Consensus 1052 ~GvNLPa~ 1059 (1689)
+||.+|..
T Consensus 367 RGVTfp~v 374 (441)
T COG4098 367 RGVTFPNV 374 (441)
T ss_pred cccccccc
Confidence 99999976
No 307
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=85.70 E-value=0.95 Score=62.76 Aligned_cols=46 Identities=20% Similarity=0.110 Sum_probs=37.9
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
..+++.||||+|||++|++|.+..... .+.++||.++|+.|..|++
T Consensus 277 ~~~~iEA~TGtGKTlaYLlpa~~~a~~----------~~~~vvIsT~T~~LQ~Ql~ 322 (928)
T PRK08074 277 EHALIEAGTGTGKSLAYLLPAAYFAKK----------KEEPVVISTYTIQLQQQLL 322 (928)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHhhc----------cCCeEEEEcCCHHHHHHHH
Confidence 457788999999999999998764322 3578999999999999964
No 308
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=85.17 E-value=0.7 Score=58.73 Aligned_cols=55 Identities=24% Similarity=0.290 Sum_probs=46.8
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCC
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g 1095 (1689)
+|..+++.|+.|.+++||++..|.-|+|+|.-. + ...--+..+..|.+.|.||.=
T Consensus 320 eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~-----~--------~i~~~~t~S~~~~~Q~lGR~L 374 (442)
T COG1061 320 EREAILERFRTGGIKVLVTVKVLDEGVDIPDAD-----V--------LIILRPTGSRRLFIQRLGRGL 374 (442)
T ss_pred HHHHHHHHHHcCCCCEEEEeeeccceecCCCCc-----E--------EEEeCCCCcHHHHHHHhhhhc
Confidence 899999999999999999999999999999761 1 123467788999999999964
No 309
>KOG4439|consensus
Probab=84.96 E-value=6.1 Score=50.95 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHhc----CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 481 TLNRIQSRLCKSALES----DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~----g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
.+-|+|..++.-.+-+ +.--|+.---|-|||+.-.-.|+.+=......++...... +.++|+|.. |.-|...++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~PaS-li~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPAS-LIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcHH-HHHHHHHHH
Confidence 5678888888544321 3345777888999999765555544332222222222222 699999974 555655554
Q ss_pred cc
Q psy14582 557 GK 558 (1689)
Q Consensus 557 ~k 558 (1689)
.+
T Consensus 403 ~~ 404 (901)
T KOG4439|consen 403 AR 404 (901)
T ss_pred HH
Confidence 43
No 310
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=84.39 E-value=2.8 Score=55.17 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=53.4
Q ss_pred CccHHHHHhccCCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHH--HHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVA--LLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~--lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.+...+...|..-....++|+.|+-.++ .++-+++.++.|+|||.+. ++..+..+.. ....++.+++|
T Consensus 138 ~~~~~l~~lf~~~~~~~d~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~---------~~~~~i~l~AP 207 (615)
T PRK10875 138 LLRQTLDALFGPVTDEVDWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQLAD---------GERCRIRLAAP 207 (615)
T ss_pred HHHHHHHHhcCcCCCCCHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcC---------CCCcEEEEECC
Confidence 3445555555311124689999998888 6678899999999999764 2333322211 02357889999
Q ss_pred chhhhHhhhhcc
Q psy14582 545 MRSLVQEMVGNF 556 (1689)
Q Consensus 545 treLa~Qi~~~f 556 (1689)
|.--|..+.+.+
T Consensus 208 TgkAA~rL~e~~ 219 (615)
T PRK10875 208 TGKAAARLTESL 219 (615)
T ss_pred cHHHHHHHHHHH
Confidence 998888776544
No 311
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=84.08 E-value=1.3 Score=59.46 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=36.7
Q ss_pred ceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 755 PVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 755 pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
.+.+.||||+|||++|++|.+..-.. .+.++||-+.|++|-.|++
T Consensus 51 ~lviEAgTGtGKTlaYLlPai~~A~~----------~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 51 ILVIEAGTGVGKTLSYLLAGIPIARA----------EKKKLVISTATVALQEQLV 95 (697)
T ss_pred eEEEECCCCcchhHHHHHHHHHHHHH----------cCCeEEEEcCCHHHHHHHH
Confidence 36688999999999999998764332 2578999999999999954
No 312
>PRK12377 putative replication protein; Provisional
Probab=84.05 E-value=1.9 Score=50.27 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=30.7
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhc
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGN 555 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~ 555 (1689)
..++++++|+|+|||..+.... +.+.. .+..++| .++.+|..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa-~~l~~----------~g~~v~~-i~~~~l~~~l~~~ 147 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIG-NRLLA----------KGRSVIV-VTVPDVMSRLHES 147 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHH-HHHHH----------cCCCeEE-EEHHHHHHHHHHH
Confidence 4689999999999998765444 44432 2234544 4556777776543
No 313
>KOG0385|consensus
Probab=83.98 E-value=62 Score=42.83 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=66.9
Q ss_pred HhcCCeEEEEEcchh------c-----cCCCC----CCcceeehhhHHHHhhccc---ceEEEEcccccccCCCCCceEE
Q psy14582 1001 FADRHIQVLVSTATL------A-----WGVNL----PAHTVVDRTLVEDLFADRH---IQVLVSTATLAWGVNLPAHTVI 1062 (1689)
Q Consensus 1001 F~~g~i~VLVaT~vl------~-----rGIDI----p~V~~V~R~~~~~~f~~g~---i~vLVaT~TLa~GvNLPa~~VI 1062 (1689)
+.++--+||+.+++- + ||... +.+.+=+|...++.|.... .-.|++|.....|+||-+..+|
T Consensus 483 Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtV 562 (971)
T KOG0385|consen 483 LKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTV 562 (971)
T ss_pred HHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEE
Confidence 344445888877542 2 34333 5566669999999998765 5788999999999999855555
Q ss_pred EeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcH
Q psy14582 1063 IKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL 1111 (1689)
Q Consensus 1063 I~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~ 1111 (1689)
|- ||.. -.|+.=+|-+-||-|-|-...-.++-+++.+..
T Consensus 563 Il----yDSD------WNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 563 IL----YDSD------WNPQVDLQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred EE----ecCC------CCchhhhHHHHHHHhhCCcCceEEEEEeccchH
Confidence 42 5542 234455566666666665566677777776543
No 314
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=83.74 E-value=0.96 Score=60.60 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=50.2
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCc------------------------------------eEEEeceeeecC
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAH------------------------------------TVIIKGTQIYNP 1071 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~------------------------------------~VII~gt~~yd~ 1071 (1689)
+|.-+.++|++|. |+|||..+++|.|+--. -.-|-||.+.+.
T Consensus 487 Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheS 564 (908)
T PRK13107 487 EAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHES 564 (908)
T ss_pred HHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCch
Confidence 7788889999999 88999999999987632 011224544432
Q ss_pred CCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1072 EKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1072 ~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
+ .-=.|-.|||||-| .+|.+..+.+-.+
T Consensus 565 r---------RID~QLrGRaGRQG--DPGss~f~lSlED 592 (908)
T PRK13107 565 R---------RIDNQLRGRAGRQG--DAGSSRFYLSMED 592 (908)
T ss_pred H---------HHHhhhhcccccCC--CCCceeEEEEeCc
Confidence 2 22249999999999 7888888776543
No 315
>PRK08181 transposase; Validated
Probab=83.31 E-value=2.5 Score=49.95 Aligned_cols=48 Identities=29% Similarity=0.540 Sum_probs=32.0
Q ss_pred HhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 494 LESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
+..++|+++++|+|+|||..+..-... +.. .+.+++|+ ++.+|..++.
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~-a~~----------~g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLA-LIE----------NGWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHH-HHH----------cCCceeee-eHHHHHHHHH
Confidence 347899999999999999776544333 322 23456665 4567777664
No 316
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=83.28 E-value=0.62 Score=49.64 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCe---EEEEEcch--hccCCCCCCcc--eeehhhHHHHhhcccceEEEEcccccccCCCCCce--EE
Q psy14582 992 VDRTLVEDLFADRHI---QVLVSTAT--LAWGVNLPAHT--VVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHT--VI 1062 (1689)
Q Consensus 992 ~dR~~ve~~F~~g~i---~VLVaT~v--l~rGIDIp~V~--~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~--VI 1062 (1689)
.+...+.+.|++..- .||+++.- +.+|||+|+-. .| | -.|+.+|... .+
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~v-----------------i-----i~glPfp~~~d~~~ 88 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAV-----------------I-----IVGIPFPNPDSPIL 88 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEE-----------------E-----EEecCCCCCCCHHH
Confidence 344677778886533 58877776 89999998742 33 3 2577776442 11
Q ss_pred EeceeeecCCC---C---cceecCHHHHHHHhcccCCCCCCCccEEEEE
Q psy14582 1063 IKGTQIYNPEK---G---RWVELGALDVLQMLGRAGRPQYDTKGEGVLI 1105 (1689)
Q Consensus 1063 I~gt~~yd~~~---~---~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil 1105 (1689)
-.-..+++... + -+.+.....+.|.+||+=|... ..|..+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~-D~g~i~l~ 136 (142)
T smart00491 89 RARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKN-DYGVVVLL 136 (142)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCcc-ceEEEEEE
Confidence 11111222111 0 1123346788999999999873 45655544
No 317
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=83.21 E-value=0.78 Score=60.86 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=48.4
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCC
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRP 1094 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~ 1094 (1689)
...-+|..+++.|+.|.+++||||..|+.|+++|...+|+. +|.. ..--+.+.-+.+.|+||+
T Consensus 476 ~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi----~Dad----ifG~p~~~~~~iqriGRa 538 (655)
T TIGR00631 476 IDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI----LDAD----KEGFLRSERSLIQTIGRA 538 (655)
T ss_pred CCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE----eCcc----cccCCCCHHHHHHHhcCC
Confidence 34457889999999999999999999999999998876642 4431 111345677889999994
No 318
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=83.16 E-value=4.3 Score=56.08 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
..|++-|.+|+..++.++.-+++.++.|+|||.+ +-++...+.. .+.+++.++||---|..+.
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~----------~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA----------AGYEVRGAALSGIAAENLE 407 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH----------cCCeEEEecCcHHHHHHHh
Confidence 3689999999998884344569999999999986 3334333332 3568999999987776654
No 319
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=82.47 E-value=1.8 Score=58.75 Aligned_cols=68 Identities=24% Similarity=0.305 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
..|||-|.+|+. ....+++|.|.-|||||.+..-=+...+... + + ..-+++.++-|+.-|.++.+.+.
T Consensus 3 ~~Ln~~Q~~av~---~~~g~~lV~AgaGSGKT~~l~~ria~Li~~~----~-i--~P~~IL~lTFT~kAA~em~~Rl~ 70 (726)
T TIGR01073 3 AHLNPEQREAVK---TTEGPLLIMAGAGSGKTRVLTHRIAHLIAEK----N-V--APWNILAITFTNKAAREMKERVE 70 (726)
T ss_pred cccCHHHHHHHh---CCCCCEEEEeCCCCCHHHHHHHHHHHHHHcC----C-C--CHHHeeeeeccHHHHHHHHHHHH
Confidence 468999999985 2468999999999999999887777666432 1 1 23479999999999999886664
No 320
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=82.44 E-value=9.7 Score=43.74 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=56.5
Q ss_pred CccHHHHHhccCCCCCCHHHHHHHHHHHh--cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFEDFKTLNRIQSRLCKSALE--SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~g~~~~tpiQ~~aip~al~--~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+-|.|+.=-+.+---+++.|.++...... +|+|.+...-+|.|||-+- +|++..+... +.+.+.+.=
T Consensus 9 ~~P~wLl~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAd----------g~~LvrviV 77 (229)
T PF12340_consen 9 EYPDWLLFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALAD----------GSRLVRVIV 77 (229)
T ss_pred hChHHHHHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcC----------CCcEEEEEc
Confidence 45788765454445689999998877664 3789999999999999875 6777766642 223333333
Q ss_pred chhhhHhhhhcccc
Q psy14582 545 MRSLVQEMVGNFGK 558 (1689)
Q Consensus 545 treLa~Qi~~~f~k 558 (1689)
-++|..|....+..
T Consensus 78 pk~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 78 PKALLEQMRQMLRS 91 (229)
T ss_pred CHHHHHHHHHHHHH
Confidence 47799998755543
No 321
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.94 E-value=8.8 Score=47.84 Aligned_cols=102 Identities=21% Similarity=0.174 Sum_probs=53.2
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc------------------
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK------------------ 558 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k------------------ 558 (1689)
+..+++++|||+|||-+..--+......... .| .....+.+=+.|.-+.++...+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~-~g----~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~ 248 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDD-KS----LNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEE 248 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhcc-CC----CeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHH
Confidence 4678999999999998865433222211100 00 112222223334444433222111
Q ss_pred -----cchhhccCCCchHHH--HHHHHHHHHHhhcccC-ceEEEEeecCCCHH
Q psy14582 559 -----DEIHLLHDERGPVLE--ALIARTIRNIEATQED-VRLVGLSATLPNYK 603 (1689)
Q Consensus 559 -----de~hll~de~g~~le--~~~~~~~~~~~~~~~~-~q~v~~SAT~~~~~ 603 (1689)
+.-+++.|.+|+... +-+.++...+...... -..+.+|||.....
T Consensus 249 L~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~ 301 (388)
T PRK12723 249 ITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD 301 (388)
T ss_pred HHHhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH
Confidence 223367788887652 2345555555555444 45788999987433
No 322
>KOG0388|consensus
Probab=81.58 E-value=6 Score=50.77 Aligned_cols=64 Identities=25% Similarity=0.317 Sum_probs=40.7
Q ss_pred CCHHHHHHHH---HHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhh---hHhhh
Q psy14582 482 LNRIQSRLCK---SALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL---VQEMV 553 (1689)
Q Consensus 482 ~tpiQ~~aip---~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreL---a~Qi~ 553 (1689)
+-.+|.+-+. .+++.|-|-|+.-.-|-|||.-.+-. |.+|....+--| --++|+|--.| |+++.
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisv-lAhLaE~~nIwG-------PFLVVtpaStL~NWaqEis 637 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISV-LAHLAETHNIWG-------PFLVVTPASTLHNWAQEIS 637 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHH-HHHHHHhccCCC-------ceEEeehHHHHhHHHHHHH
Confidence 3445655443 24678999999999999999877544 445544322222 25677887777 45543
No 323
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=81.54 E-value=2.2 Score=52.19 Aligned_cols=57 Identities=23% Similarity=0.330 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhh
Q psy14582 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLV 549 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa 549 (1689)
.+++.+...+..++..+.|++++++||||||-..- .++..+. ...+++++--+.||.
T Consensus 162 ~~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~-al~~~i~-----------~~~riv~iEd~~El~ 218 (340)
T TIGR03819 162 TFPPGVARLLRAIVAARLAFLISGGTGSGKTTLLS-ALLALVA-----------PDERIVLVEDAAELR 218 (340)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH-HHHccCC-----------CCCcEEEECCcceec
Confidence 35677888888788788999999999999986542 2222221 223677777777774
No 324
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=81.16 E-value=1.2 Score=59.61 Aligned_cols=73 Identities=19% Similarity=0.158 Sum_probs=55.6
Q ss_pred eehhhHHHHhhcccceEEEEcccccccCCCCCc-------------------------------------eEEEeceeee
Q psy14582 1027 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAH-------------------------------------TVIIKGTQIY 1069 (1689)
Q Consensus 1027 V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~-------------------------------------~VII~gt~~y 1069 (1689)
-+|+..+.+|+++...|+|||..+++|.|++-. -.-|-||...
T Consensus 465 ~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerh 544 (830)
T PRK12904 465 HEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERH 544 (830)
T ss_pred HHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccC
Confidence 389999999999999999999999999999864 1222245433
Q ss_pred cCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1070 NPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1070 d~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
+ |..-=.|-.|||||-| .+|.+-.+.+-.+
T Consensus 545 e---------srRid~QlrGRagRQG--dpGss~f~lSleD 574 (830)
T PRK12904 545 E---------SRRIDNQLRGRSGRQG--DPGSSRFYLSLED 574 (830)
T ss_pred c---------hHHHHHHhhcccccCC--CCCceeEEEEcCc
Confidence 3 2233459999999999 7888888776543
No 325
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=81.03 E-value=1.9 Score=51.05 Aligned_cols=54 Identities=28% Similarity=0.461 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhH
Q psy14582 486 QSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ 550 (1689)
Q Consensus 486 Q~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~ 550 (1689)
..+.+..+++.+.++++++|||||||-.. -.++..+-. ...+++.+-.+.|+--
T Consensus 116 ~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~~----------~~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 116 IAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIPP----------EDERIVTIEDPPELRL 169 (270)
T ss_dssp HHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCHT----------TTSEEEEEESSS-S--
T ss_pred HHHHHhhccccceEEEEECCCccccchHH-HHHhhhccc----------cccceEEeccccceee
Confidence 34455545556899999999999999665 444454432 1247888877777643
No 326
>KOG0953|consensus
Probab=80.78 E-value=1.8 Score=54.23 Aligned_cols=47 Identities=28% Similarity=0.439 Sum_probs=37.1
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
.+-++-++||.||||--| |+++... .+++|--|.|-||.+++..++.
T Consensus 191 RkIi~H~GPTNSGKTy~A----Lqrl~~a-----------ksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRA----LQRLKSA-----------KSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred heEEEEeCCCCCchhHHH----HHHHhhh-----------ccceecchHHHHHHHHHHHhhh
Confidence 345677999999999765 5666532 3689999999999999987765
No 327
>PRK06835 DNA replication protein DnaC; Validated
Probab=80.66 E-value=4.2 Score=49.54 Aligned_cols=45 Identities=31% Similarity=0.534 Sum_probs=30.3
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhh
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 552 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi 552 (1689)
.+.++++++|||+|||..+. +|.+.+.. .+..++|+ +..+|..+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~----------~g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLD----------RGKSVIYR-TADELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHH----------CCCeEEEE-EHHHHHHHH
Confidence 46899999999999998654 44455543 23467775 445565554
No 328
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=80.58 E-value=2.3 Score=46.54 Aligned_cols=48 Identities=27% Similarity=0.433 Sum_probs=38.2
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhh
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 810 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~ 810 (1689)
.++.+..|+|+|||.+....++..+... ...+++|++|++.++.|..+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~---------~~~~~l~~~p~~~~~~~~~~ 72 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRG---------KGKRVLVLVPTRELAEQWAE 72 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhccc---------CCCcEEEEeCCHHHHHHHHH
Confidence 4677889999999999888887766432 14689999999999988543
No 329
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.57 E-value=0.97 Score=53.14 Aligned_cols=20 Identities=55% Similarity=0.777 Sum_probs=17.5
Q ss_pred cCCcEEEEccCCCChHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~l 515 (1689)
...|+|+.+|||||||+-|-
T Consensus 96 ~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeccEEEECCCCCcHHHHHH
Confidence 45799999999999998774
No 330
>KOG0989|consensus
Probab=80.38 E-value=6 Score=46.77 Aligned_cols=94 Identities=22% Similarity=0.219 Sum_probs=58.3
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCC--CCCCeEEEEEccchhhhHhhhhcccc--------------cc
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTI--NADEFKIIYVAPMRSLVQEMVGNFGK--------------DE 560 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~--~~~~~kvl~laPtreLa~Qi~~~f~k--------------de 560 (1689)
.-++|..+|.|+|||-++++..-+....+..+.+.. +....+.+=+.+. ....|.+ ..
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~------Kik~fakl~~~~~~~~~~~~~~f 130 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVRE------KIKNFAKLTVLLKRSDGYPCPPF 130 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhh------hhcCHHHHhhccccccCCCCCcc
Confidence 457899999999999999887765554332222211 2223333333333 2333322 11
Q ss_pred hhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEe
Q psy14582 561 IHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLS 596 (1689)
Q Consensus 561 ~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~S 596 (1689)
.-+|+||++.|-..--..+.+.++......++++..
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIc 166 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILIC 166 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEc
Confidence 226778888888777777777777777778877763
No 331
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=79.21 E-value=2.7 Score=37.79 Aligned_cols=54 Identities=13% Similarity=0.249 Sum_probs=46.8
Q ss_pred ccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhhcCCHHHHHHHHHHHh
Q psy14582 1507 YLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCN 1560 (1689)
Q Consensus 1507 ~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll~l~~~q~~~v~~~~~ 1560 (1689)
.|+++|++++..++++.+.++.|+.++...+.++-.++-+++++..+.+...++
T Consensus 6 ~L~~I~Gig~~~a~~L~~~G~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 6 DLLSIPGIGPKRAEKLYEAGIKTLEDLANADPEELAEIPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHHTSTTCHHHHHHHHHHTTCSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHhcCCCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 478899999999999999999999999999887777666789999888887764
No 332
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=79.08 E-value=2.4 Score=51.27 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCcEEEEccCCCChHHHH
Q psy14582 488 RLCKSALESDENLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 488 ~aip~al~~g~nvLv~APTGSGKT~a~ 514 (1689)
..+..++..+.++++++|||||||-..
T Consensus 135 ~~l~~~v~~~~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 135 EFLRLAIASRKNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHhhCCCEEEEECCCCCCHHHHH
Confidence 344456667999999999999999754
No 333
>PF12846 AAA_10: AAA-like domain
Probab=78.75 E-value=2.6 Score=50.07 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=29.5
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhH
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ 550 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~ 550 (1689)
+.+++++++||||||.... .++..+.. .+..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~----------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR----------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH----------cCCCEEEEcCCchHHH
Confidence 3689999999999998777 44444443 2346677766655544
No 334
>PRK06526 transposase; Provisional
Probab=78.61 E-value=3.4 Score=48.56 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=25.1
Q ss_pred CCccceeeeecccccccccccceeEeecCCCchHHHHH
Q psy14582 734 LPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 734 lpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~l 771 (1689)
+++..+..+.+..|+. ...++.+.-|+|+|||....
T Consensus 81 ~~~~~~~~l~~~~fi~--~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 81 LKRDTIAHLGTLDFVT--GKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred cchHHHHHHhcCchhh--cCceEEEEeCCCCchHHHHH
Confidence 4444444555667874 45568888999999998765
No 335
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=78.32 E-value=6.9 Score=47.77 Aligned_cols=115 Identities=15% Similarity=0.166 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHhcCC---cEEEEccCCCChHHHHHHHHHHHHhhcccCC---CCC-------CCCCeEEEEEccch--
Q psy14582 482 LNRIQSRLCKSALESDE---NLLLCAPTGAGKTNVALLCMLQEIGKHINAD---GTI-------NADEFKIIYVAPMR-- 546 (1689)
Q Consensus 482 ~tpiQ~~aip~al~~g~---nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~---g~~-------~~~~~kvl~laPtr-- 546 (1689)
++|||...+..++.+|+ -+|+++|.|.|||..+..-+-..+-...... |.. ....+...++.|..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~ 83 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD 83 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC
Confidence 57899999888886543 5899999999999887665433332221110 100 11345677777752
Q ss_pred -hhhHhhhhcccccch------h---hccCCCchHHHHHHHHHHHHHhhcccCceEEEEe
Q psy14582 547 -SLVQEMVGNFGKDEI------H---LLHDERGPVLEALIARTIRNIEATQEDVRLVGLS 596 (1689)
Q Consensus 547 -eLa~Qi~~~f~kde~------h---ll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~S 596 (1689)
..--++++.+..... . ++.|+++.|-..-...+++.++..+.+..+++.|
T Consensus 84 ~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t 143 (328)
T PRK05707 84 KTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLIS 143 (328)
T ss_pred CCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 121222222221100 0 3456666666666666666666655555555443
No 336
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=78.02 E-value=2.7 Score=56.30 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=37.9
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
..+++.+|||+|||+.+++|.+..-... +.+++|.++|+.|-.|.
T Consensus 35 ~~~~iEapTGtGKTl~yL~~al~~~~~~----------~~~viist~t~~lq~q~ 79 (654)
T COG1199 35 EGLLIEAPTGTGKTLAYLLPALAYAREE----------GKKVIISTRTKALQEQL 79 (654)
T ss_pred CcEEEECCCCccHHHHHHHHHHHHHHHc----------CCcEEEECCCHHHHHHH
Confidence 3488899999999999999988765432 47899999999998885
No 337
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=77.54 E-value=5.1 Score=47.10 Aligned_cols=52 Identities=27% Similarity=0.416 Sum_probs=38.1
Q ss_pred HhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 494 LESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
+.++.|+++.+|+|+|||..+..-....+ . .| .-++.+++.+|++++...+.
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~----------~g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGNELL-K----------AG-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHHHH-H----------cC-CeEEEEEHHHHHHHHHHHHh
Confidence 34789999999999999998865554433 3 23 34555789999999876554
No 338
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=77.45 E-value=6.8 Score=51.53 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=49.8
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHH--HHHHHHHHhhcccCCCCCCCCCeEEEEEccchhh
Q psy14582 471 YVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVA--LLCMLQEIGKHINADGTINADEFKIIYVAPMRSL 548 (1689)
Q Consensus 471 ~~~~~f~g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~--lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreL 548 (1689)
.+...|.... ...+|+.|+..++ .++-++++++.|+|||.+. ++..+...... ..+.++++.|||---
T Consensus 136 ~l~~~~~~~~-~~~~Qk~A~~~al-~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~--------~~~~~I~l~APTGkA 205 (586)
T TIGR01447 136 ILENLFPLLN-EQNWQKVAVALAL-KSNFSLITGGPGTGKTTTVARLLLALVKQSPK--------QGKLRIALAAPTGKA 205 (586)
T ss_pred HHHHhhcccc-ccHHHHHHHHHHh-hCCeEEEEcCCCCCHHHHHHHHHHHHHHhccc--------cCCCcEEEECCcHHH
Confidence 3444443222 2379999999998 5688899999999999864 33333222110 012579999999887
Q ss_pred hHhhhhcc
Q psy14582 549 VQEMVGNF 556 (1689)
Q Consensus 549 a~Qi~~~f 556 (1689)
|..+.+.+
T Consensus 206 A~rL~e~~ 213 (586)
T TIGR01447 206 AARLAESL 213 (586)
T ss_pred HHHHHHHH
Confidence 77765433
No 339
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=77.19 E-value=2 Score=42.94 Aligned_cols=66 Identities=15% Similarity=0.027 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCCh
Q psy14582 1194 TAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVRE 1266 (1689)
Q Consensus 1194 ~al~~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~ 1266 (1689)
.|+..|...|+|.-+ -.+|++|+.++.++++|.-.+++.......+. .+++.++|.-+. .++.++.
T Consensus 1 ~A~~~L~~Lgald~~-----~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~-~~~~~iaa~ls~-~~~f~~~ 66 (102)
T PF04408_consen 1 KALELLKSLGALDEN-----GNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCL-DEALIIAAILSV-RSPFINP 66 (102)
T ss_dssp -HHHHHHHTTSB-TT-----S-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-H-HHHHHHHHHHTS-S--B---
T ss_pred CHHHHHHHCCCCCCC-----CCcCHHHHHHHHCCCchHhHhHhhhccccccH-HHHHHHHHHHcC-CCcccCc
Confidence 367889999999532 38899999999999999999999877766653 455555555555 5555553
No 340
>KOG0391|consensus
Probab=77.12 E-value=9.8 Score=51.55 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=27.6
Q ss_pred CCHHHHHHHH---HHHhcCCcEEEEccCCCChHHHHHHHHHHHHh
Q psy14582 482 LNRIQSRLCK---SALESDENLLLCAPTGAGKTNVALLCMLQEIG 523 (1689)
Q Consensus 482 ~tpiQ~~aip---~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~ 523 (1689)
++.+|..-+. ..++.+-|-|+.-.-|-|||.-- +..|.++.
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLA 659 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLA 659 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHH
Confidence 4667776554 34566778899999999999643 33334443
No 341
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=76.74 E-value=42 Score=40.22 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=49.9
Q ss_pred CccHHHHHhccCCCCCCHHHHHHHHHHHh---------cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCe
Q psy14582 467 KLPRYVQHAFEDFKTLNRIQSRLCKSALE---------SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEF 537 (1689)
Q Consensus 467 ~Lp~~~~~~f~g~~~~tpiQ~~aip~al~---------~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~ 537 (1689)
.||+.+.. -..+...|-+++-.|.. .+.-.++-=.||.||.-...--|+....+ ...
T Consensus 27 ~lp~~~~~----~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~----------Gr~ 92 (303)
T PF13872_consen 27 HLPEEVID----SGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR----------GRK 92 (303)
T ss_pred CCCHHHHh----cccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc----------CCC
Confidence 56664433 24578899998876642 13456777899999987765556655543 123
Q ss_pred EEEEEccchhhhHhhhh
Q psy14582 538 KIIYVAPMRSLVQEMVG 554 (1689)
Q Consensus 538 kvl~laPtreLa~Qi~~ 554 (1689)
|+|.++..-.|-.+..+
T Consensus 93 r~vwvS~s~dL~~Da~R 109 (303)
T PF13872_consen 93 RAVWVSVSNDLKYDAER 109 (303)
T ss_pred ceEEEECChhhhhHHHH
Confidence 79999999888877553
No 342
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=76.22 E-value=6.4 Score=53.18 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhh
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 554 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~ 554 (1689)
..+++-|.+|+..+. +++-+++.++.|+|||.+.- .++..+... + ....++.++||-.-|..+.+
T Consensus 322 ~~l~~~Q~~Ai~~~~-~~~~~iitGgpGTGKTt~l~-~i~~~~~~~----~----~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 322 KGLSEEQKQALDTAI-QHKVVILTGGPGTGKTTITR-AIIELAEEL----G----GLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCHHHHHHHHHHH-hCCeEEEECCCCCCHHHHHH-HHHHHHHHc----C----CCceEEEEeCchHHHHHHHH
Confidence 468999999999887 67789999999999997642 333333321 1 11478889999988877653
No 343
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=76.00 E-value=2.2 Score=50.67 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCcEEEEccCCCChHHHHHH
Q psy14582 488 RLCKSALESDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 488 ~aip~al~~g~nvLv~APTGSGKT~a~lL 516 (1689)
..+...+.+++++|+++|||+|||....-
T Consensus 24 ~ll~~l~~~~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 24 YLLDLLLSNGRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp HHHHHHHHCTEEEEEESSTTSSHHHHHHH
T ss_pred HHHHHHHHcCCcEEEECCCCCchhHHHHh
Confidence 45555667899999999999999986543
No 344
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=75.93 E-value=5.4 Score=47.16 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHh-cCCcEEEEccCCCChHHHHHHHHHHHH
Q psy14582 483 NRIQSRLCKSALE-SDENLLLCAPTGAGKTNVALLCMLQEI 522 (1689)
Q Consensus 483 tpiQ~~aip~al~-~g~nvLv~APTGSGKT~a~lLpiL~~l 522 (1689)
.+-|.+.+..++. .+..+++++|||||||-.. ..++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 5556666655553 3557899999999999765 3344444
No 345
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=75.27 E-value=7 Score=48.35 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=22.4
Q ss_pred HhcCCcEEEEccCCCChHHHHHHHHHHHH
Q psy14582 494 LESDENLLLCAPTGAGKTNVALLCMLQEI 522 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~lLpiL~~l 522 (1689)
+..|+.+++++|||+|||....--+-...
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999988765554433
No 346
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=75.18 E-value=14 Score=44.88 Aligned_cols=42 Identities=29% Similarity=0.495 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHH---hcCC---cEEEEccCCCChHHHHHHHHHH
Q psy14582 479 FKTLNRIQSRLCKSAL---ESDE---NLLLCAPTGAGKTNVALLCMLQ 520 (1689)
Q Consensus 479 ~~~~tpiQ~~aip~al---~~g~---nvLv~APTGSGKT~a~lLpiL~ 520 (1689)
+..++|||..++..+. .+|+ -+|+++|.|.||+..+..-+-.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~ 49 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEH 49 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHH
Confidence 3467889888887643 2333 5899999999999887654433
No 347
>PRK07952 DNA replication protein DnaC; Validated
Probab=75.11 E-value=7.8 Score=45.22 Aligned_cols=46 Identities=13% Similarity=0.289 Sum_probs=29.5
Q ss_pred CcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhc
Q psy14582 498 ENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGN 555 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~ 555 (1689)
..+++++|+|+|||..+..- .+.+.. .+..++|+ +..+|...+...
T Consensus 100 ~~~~l~G~~GtGKThLa~ai-a~~l~~----------~g~~v~~i-t~~~l~~~l~~~ 145 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAI-CNELLL----------RGKSVLII-TVADIMSAMKDT 145 (244)
T ss_pred ceEEEECCCCCCHHHHHHHH-HHHHHh----------cCCeEEEE-EHHHHHHHHHHH
Confidence 47999999999999876543 344442 23356555 556666555433
No 348
>PRK14974 cell division protein FtsY; Provisional
Probab=74.94 E-value=16 Score=44.63 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=31.7
Q ss_pred hccCCCchHH--HHHHHHHHHHHhhcccCceEEEEeecCCCHH--HHHHHHhhCCCCCcee
Q psy14582 563 LLHDERGPVL--EALIARTIRNIEATQEDVRLVGLSATLPNYK--DVATLLRIKPETGLFY 619 (1689)
Q Consensus 563 ll~de~g~~l--e~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~--~v~~~l~~~~~~~~~~ 619 (1689)
++.|.+|+.- ...+..+....+...+...++.+|||.++.. .+..|....+.+++.+
T Consensus 226 VLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 226 VLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred EEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence 5667777763 3344444343444556677888999886543 3555543333244333
No 349
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=74.66 E-value=12 Score=42.21 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=26.4
Q ss_pred eeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHH
Q psy14582 756 VSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 807 (1689)
Q Consensus 756 v~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q 807 (1689)
..+.-|.|+|||+... .+...+.. .+.++++++||...+.+
T Consensus 21 ~~l~G~aGtGKT~~l~-~~~~~~~~----------~g~~v~~~apT~~Aa~~ 61 (196)
T PF13604_consen 21 SVLQGPAGTGKTTLLK-ALAEALEA----------AGKRVIGLAPTNKAAKE 61 (196)
T ss_dssp EEEEESTTSTHHHHHH-HHHHHHHH----------TT--EEEEESSHHHHHH
T ss_pred EEEEECCCCCHHHHHH-HHHHHHHh----------CCCeEEEECCcHHHHHH
Confidence 4566889999998632 23333322 25799999999877665
No 350
>KOG0991|consensus
Probab=74.06 E-value=3 Score=47.04 Aligned_cols=96 Identities=21% Similarity=0.230 Sum_probs=49.4
Q ss_pred CcEEEEccCCCChHHHHHHHHHHHHhhcccCC-CCCCCCCeEEEEEccch--hhhHhhhhcccccchhhccCCCchHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALLCMLQEIGKHINAD-GTINADEFKIIYVAPMR--SLVQEMVGNFGKDEIHLLHDERGPVLEA 574 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~-g~~~~~~~kvl~laPtr--eLa~Qi~~~f~kde~hll~de~g~~le~ 574 (1689)
.|+|+++|.|.|||-+....+-..++...... -..+..+-|.|=++-++ ..|++.+.--.-+..-.++||+|.|-+-
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g 128 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG 128 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH
Confidence 48999999999999987665544443221110 12233333444444332 4444433211112223677999988654
Q ss_pred HHHHHHHHHhhcccCceEE
Q psy14582 575 LIARTIRNIEATQEDVRLV 593 (1689)
Q Consensus 575 ~~~~~~~~~~~~~~~~q~v 593 (1689)
--..+.+.++-..+..|+.
T Consensus 129 AQQAlRRtMEiyS~ttRFa 147 (333)
T KOG0991|consen 129 AQQALRRTMEIYSNTTRFA 147 (333)
T ss_pred HHHHHHHHHHHHcccchhh
Confidence 4333333334344444433
No 351
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=73.99 E-value=2.6 Score=43.04 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=18.3
Q ss_pred CCcEEEEccCCCChHHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpi 518 (1689)
+..+++++|+|||||..+..-+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~ 23 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA 23 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 5789999999999998875543
No 352
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=73.99 E-value=3.1 Score=52.48 Aligned_cols=40 Identities=30% Similarity=0.422 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHhcCC-cEEEEccCCCChHHHHHHHHHHHHh
Q psy14582 483 NRIQSRLCKSALESDE-NLLLCAPTGAGKTNVALLCMLQEIG 523 (1689)
Q Consensus 483 tpiQ~~aip~al~~g~-nvLv~APTGSGKT~a~lLpiL~~l~ 523 (1689)
++.|.+.+..++...+ =+||.+|||||||.. +..+++.+.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 6777777777775443 468999999999966 455556554
No 353
>PRK06526 transposase; Provisional
Probab=73.16 E-value=3.1 Score=48.83 Aligned_cols=47 Identities=19% Similarity=0.415 Sum_probs=30.5
Q ss_pred hcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
+.++|+++++|+|+|||..+..-...... .+.+++|+ .+.+|+.++.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~-----------~g~~v~f~-t~~~l~~~l~ 142 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQ-----------AGHRVLFA-TAAQWVARLA 142 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHH-----------CCCchhhh-hHHHHHHHHH
Confidence 36789999999999999887654433332 23456553 3445655543
No 354
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=72.74 E-value=3.4 Score=55.65 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCC
Q psy14582 1327 MRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFR 1368 (1689)
Q Consensus 1327 ~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~~ 1368 (1689)
.|-++=-++-..|.......-.|-..|.-|-..-..||..+.
T Consensus 763 er~i~L~~iD~~W~eHL~~md~Lr~~I~lr~y~QkdPl~eYk 804 (913)
T PRK13103 763 EKQILLRVLDDLWKDHLSTMDHLRHGIHLRGYAQKNPKQEYK 804 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCChHHHHH
Confidence 333444445567888777777777777777777777776544
No 355
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.66 E-value=22 Score=44.27 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=18.9
Q ss_pred CCcEEEEccCCCChHHHHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQ 520 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~ 520 (1689)
.+.+.+++|||+|||-....-...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 467899999999999886655443
No 356
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=71.95 E-value=3.5 Score=54.30 Aligned_cols=46 Identities=30% Similarity=0.330 Sum_probs=35.2
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHh
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 551 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Q 551 (1689)
.-|+=|...||+|||.+|+=+|...=... .-+|-|+|+|+.|.-.-
T Consensus 74 ~lNiDI~METGTGKTy~YlrtmfeLhk~Y---------G~~KFIivVPs~AIkeG 119 (985)
T COG3587 74 KLNIDILMETGTGKTYTYLRTMFELHKKY---------GLFKFIIVVPSLAIKEG 119 (985)
T ss_pred cceeeEEEecCCCceeeHHHHHHHHHHHh---------CceeEEEEeccHHHHhh
Confidence 34677899999999999998887643332 23589999999987544
No 357
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=71.65 E-value=34 Score=38.62 Aligned_cols=54 Identities=24% Similarity=0.195 Sum_probs=29.9
Q ss_pred hccCCCch--HHHHHHHHHHHHHhhcccCceEEEEeecCCCHH--HHHHHHhhCCCCC
Q psy14582 563 LLHDERGP--VLEALIARTIRNIEATQEDVRLVGLSATLPNYK--DVATLLRIKPETG 616 (1689)
Q Consensus 563 ll~de~g~--~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~--~v~~~l~~~~~~~ 616 (1689)
++.|-.|+ .-...+.++...+....+.--.+.+|||..... .+..+....+.++
T Consensus 87 vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~ 144 (196)
T PF00448_consen 87 VLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDG 144 (196)
T ss_dssp EEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCE
T ss_pred EEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCce
Confidence 44464443 334455555555555556667788999987655 4455544433344
No 358
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=71.63 E-value=13 Score=44.52 Aligned_cols=104 Identities=18% Similarity=0.128 Sum_probs=0.0
Q ss_pred eeccccccc------------------ccccc-eeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccch
Q psy14582 742 IVSDRWIGA------------------ETILP-VSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR 802 (1689)
Q Consensus 742 i~sd~wl~~------------------e~~~p-v~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r 802 (1689)
+.+++|++- ....| +.+.-+++.|||.+.. +....+......-...-+-+++-+|..
T Consensus 31 i~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~----rF~~~hp~~~d~~~~~~PVv~vq~P~~ 106 (302)
T PF05621_consen 31 IRADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIE----RFRRLHPPQSDEDAERIPVVYVQMPPE 106 (302)
T ss_pred HhcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHH----HHHHHCCCCCCCCCccccEEEEecCCC
Q ss_pred hHHHHH---------------------------------hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEE
Q psy14582 803 SLVQEM---------------------------------VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLV 849 (1689)
Q Consensus 803 ~L~~q~---------------------------------v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV 849 (1689)
.-.... ++++||||+|.+.......-..++.-+++....+ ++.+|
T Consensus 107 p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL--~ipiV 184 (302)
T PF05621_consen 107 PDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL--QIPIV 184 (302)
T ss_pred CChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc--CCCeE
Q ss_pred EE
Q psy14582 850 GL 851 (1689)
Q Consensus 850 ~l 851 (1689)
++
T Consensus 185 ~v 186 (302)
T PF05621_consen 185 GV 186 (302)
T ss_pred Ee
No 359
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.48 E-value=24 Score=45.41 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=19.3
Q ss_pred hcCCcEEEEccCCCChHHHHHHHH
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLpi 518 (1689)
+.|+.+.+++|||+|||..+..-+
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999997764433
No 360
>KOG1131|consensus
Probab=71.32 E-value=11 Score=47.15 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=52.0
Q ss_pred CCCCCCHHHHHHH---HHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhh
Q psy14582 478 DFKTLNRIQSRLC---KSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 554 (1689)
Q Consensus 478 g~~~~tpiQ~~ai---p~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~ 554 (1689)
.|...+|-|-+=. ..+|+.+.+.|+..|+|+|||.+-+-.++..-.+++. ...|.||-+-|..-+.....
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~-------~~~KliYCSRTvpEieK~l~ 85 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD-------EHRKLIYCSRTVPEIEKALE 85 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc-------ccceEEEecCcchHHHHHHH
Confidence 5677788887643 3467788999999999999998877776665554421 45689999888766555444
Q ss_pred cc
Q psy14582 555 NF 556 (1689)
Q Consensus 555 ~f 556 (1689)
++
T Consensus 86 El 87 (755)
T KOG1131|consen 86 EL 87 (755)
T ss_pred HH
Confidence 43
No 361
>PRK10436 hypothetical protein; Provisional
Probab=71.26 E-value=5.5 Score=50.77 Aligned_cols=40 Identities=30% Similarity=0.413 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHH-hcCCcEEEEccCCCChHHHHHHHHHHHHh
Q psy14582 483 NRIQSRLCKSAL-ESDENLLLCAPTGAGKTNVALLCMLQEIG 523 (1689)
Q Consensus 483 tpiQ~~aip~al-~~g~nvLv~APTGSGKT~a~lLpiL~~l~ 523 (1689)
.+-|.+.+..++ ..+..+|+++|||||||-.. ..++..+.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 455555555444 35678999999999999865 34555553
No 362
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=71.19 E-value=5.3 Score=52.48 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHh-cCCcEEEEccCCCChHHHHHHHHHHHH
Q psy14582 483 NRIQSRLCKSALE-SDENLLLCAPTGAGKTNVALLCMLQEI 522 (1689)
Q Consensus 483 tpiQ~~aip~al~-~g~nvLv~APTGSGKT~a~lLpiL~~l 522 (1689)
.+-|.+.+..++. .+..+|+++|||||||-.. ..+++.+
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 4555566655543 4567899999999999774 4455555
No 363
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=71.08 E-value=2.3 Score=54.62 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=33.0
Q ss_pred CcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 498 ENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
.++++.||||||||..+++|.+- . . .+ -+|+.=|-.+|.....
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll--~-~---------~~-s~iV~D~KgEl~~~t~ 87 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL--N-Y---------PG-SMIVTDPKGELYEKTA 87 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH--h-c---------cC-CEEEEECCCcHHHHHH
Confidence 57999999999999999999762 2 1 11 4788888888876554
No 364
>PRK14873 primosome assembly protein PriA; Provisional
Probab=70.91 E-value=14 Score=49.24 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=53.0
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.++++||.++....+..+...|..... ...++++|++++..+|..
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f~-----------------------------------~~~v~~lhS~l~~~~R~~ 231 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALLG-----------------------------------AGDVAVLSAGLGPADRYR 231 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHcC-----------------------------------CCcEEEECCCCCHHHHHH
Confidence 378999999999999999888875321 023778899999999999
Q ss_pred HHHHHhcCCeEEEEEcch
Q psy14582 997 VEDLFADRHIQVLVSTAT 1014 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT~v 1014 (1689)
......+|..+|+|+|..
T Consensus 232 ~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 232 RWLAVLRGQARVVVGTRS 249 (665)
T ss_pred HHHHHhCCCCcEEEEcce
Confidence 999999999999988854
No 365
>PRK08116 hypothetical protein; Validated
Probab=70.88 E-value=10 Score=44.90 Aligned_cols=46 Identities=26% Similarity=0.476 Sum_probs=30.7
Q ss_pred cEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 499 NLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
.+++++++|+|||..+.. |.+.+... +..++|+ +..+|..++...+
T Consensus 116 gl~l~G~~GtGKThLa~a-ia~~l~~~----------~~~v~~~-~~~~ll~~i~~~~ 161 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAAC-IANELIEK----------GVPVIFV-NFPQLLNRIKSTY 161 (268)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHHc----------CCeEEEE-EHHHHHHHHHHHH
Confidence 499999999999988764 55666532 2345554 4566766665443
No 366
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=70.65 E-value=3.2 Score=57.12 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=53.5
Q ss_pred CcceeehhhHHHHhhcc--cceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1023 AHTVVDRTLVEDLFADR--HIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g--~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
+.+..+|..+++.|+++ .+++||||...+.|+|++..+.||. ||. +.+-.....|.||.+ +.|
T Consensus 527 ~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn----fDl---------P~nP~~~eQRIGR~~--RiG 591 (956)
T PRK04914 527 GMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL----FDL---------PFNPDLLEQRIGRLD--RIG 591 (956)
T ss_pred CCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE----ecC---------CCCHHHHHHHhcccc--cCC
Confidence 45555899999999985 5999999999999999996655543 554 999999999999987 777
Q ss_pred EE
Q psy14582 1101 EG 1102 (1689)
Q Consensus 1101 ~~ 1102 (1689)
..
T Consensus 592 Q~ 593 (956)
T PRK04914 592 QK 593 (956)
T ss_pred CC
Confidence 43
No 367
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=70.25 E-value=8.9 Score=48.99 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=54.9
Q ss_pred cHHHHHhcc-----CC----CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEE
Q psy14582 469 PRYVQHAFE-----DF----KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKI 539 (1689)
Q Consensus 469 p~~~~~~f~-----g~----~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kv 539 (1689)
.+.++.+++ +. .++.+-|-+++. ..++.-++|.+.-|||||.+++--+.-.++.++ |++.. .-+
T Consensus 191 dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR--~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R---~~l~~--k~v 263 (747)
T COG3973 191 DEVLQRVLEKNSSAKMRDIVETIQKEQNEIIR--FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYR---GPLQA--KPV 263 (747)
T ss_pred HHHHHHHHHhccchhHHHHHHHhhHhHHHHHh--ccCCCeEEEecCCCCCchhHHHHHHHHHHhccc---ccccc--Cce
Confidence 456666664 11 345556666664 335677899999999999999887766677654 33322 239
Q ss_pred EEEccchhhhHhhhhcc
Q psy14582 540 IYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 540 l~laPtreLa~Qi~~~f 556 (1689)
+++.|.|-+..=+...+
T Consensus 264 lvl~PN~vFleYis~VL 280 (747)
T COG3973 264 LVLGPNRVFLEYISRVL 280 (747)
T ss_pred EEEcCcHHHHHHHHHhc
Confidence 99999998876655433
No 368
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=70.08 E-value=7.5 Score=47.79 Aligned_cols=45 Identities=27% Similarity=0.365 Sum_probs=29.0
Q ss_pred hcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhh
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLV 549 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa 549 (1689)
..+..+++++|||||||-..- .++..+... .+.+++.+--..|+.
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~-al~~~i~~~---------~~~~i~tiEdp~E~~ 164 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLA-SMIDYINKN---------AAGHIITIEDPIEYV 164 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHH-HHHHhhCcC---------CCCEEEEEcCChhhh
Confidence 357899999999999997653 344444321 123677765555554
No 369
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=69.64 E-value=1.6 Score=54.56 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=32.2
Q ss_pred cEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 499 NLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
+++++||||||||..+++|-+... +..+|++=|--++.....
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------------~~s~vv~D~Kge~~~~t~ 42 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------------PGSVVVLDPKGENFELTS 42 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------------CCCEEEEccchhHHHHHH
Confidence 579999999999999999865421 125888888888886544
No 370
>KOG1132|consensus
Probab=69.29 E-value=7.3 Score=51.69 Aligned_cols=78 Identities=24% Similarity=0.298 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHH---HhcCCcEEEEccCCCChHHHHHHHHH---HHHhhcc--------c--------C--CCCC----
Q psy14582 481 TLNRIQSRLCKSA---LESDENLLLCAPTGAGKTNVALLCML---QEIGKHI--------N--------A--DGTI---- 532 (1689)
Q Consensus 481 ~~tpiQ~~aip~a---l~~g~nvLv~APTGSGKT~a~lLpiL---~~l~~~~--------~--------~--~g~~---- 532 (1689)
+|+|.|...+..+ |++..|.++..|||+|||++-+-..| +++.... . . .|..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 5788898766554 44678999999999999998654443 3333110 0 0 0000
Q ss_pred ------CCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 533 ------NADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 533 ------~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
...-+++.|-+-|..-..|+++++++
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrr 132 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRR 132 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhh
Confidence 01246777777787777787777665
No 371
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=69.15 E-value=3.7 Score=48.38 Aligned_cols=28 Identities=39% Similarity=0.671 Sum_probs=20.0
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhc
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKH 525 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~ 525 (1689)
..=+||.+|||||||-. +..|+.++.++
T Consensus 125 ~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 125 RGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred CceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 45679999999999754 34556666554
No 372
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=69.15 E-value=12 Score=50.14 Aligned_cols=62 Identities=19% Similarity=0.167 Sum_probs=52.5
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.++++||.||...-+..+...+..+. ...+++.|++|++.+|..
T Consensus 244 ~GkqvLvLVPEI~Ltpq~~~rf~~rF------------------------------------g~~v~vlHS~Ls~~er~~ 287 (730)
T COG1198 244 QGKQVLVLVPEIALTPQLLARFKARF------------------------------------GAKVAVLHSGLSPGERYR 287 (730)
T ss_pred cCCEEEEEeccccchHHHHHHHHHHh------------------------------------CCChhhhcccCChHHHHH
Confidence 36899999999999988888887643 234667799999999999
Q ss_pred HHHHHhcCCeEEEEEcch
Q psy14582 997 VEDLFADRHIQVLVSTAT 1014 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT~v 1014 (1689)
+-...++|..+|+|.|..
T Consensus 288 ~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 288 VWRRARRGEARVVIGTRS 305 (730)
T ss_pred HHHHHhcCCceEEEEech
Confidence 999999999999988854
No 373
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.59 E-value=17 Score=44.12 Aligned_cols=54 Identities=26% Similarity=0.282 Sum_probs=35.5
Q ss_pred CccCCCCccHHHHHhcc----CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHH
Q psy14582 461 TLVPIDKLPRYVQHAFE----DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 461 ~l~~~~~Lp~~~~~~f~----g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpi 518 (1689)
..-.+.+|.+++++.-. ..++|--++.--+ +..+-+|+.+|.|+|||+.|=..+
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI----~PPKGVLLYGPPGTGKTLLAkAVA 206 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGI----DPPKGVLLYGPPGTGKTLLAKAVA 206 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC----CCCCceEeeCCCCCcHHHHHHHHH
Confidence 34456788888776543 4444444433332 356789999999999998874443
No 374
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=68.06 E-value=31 Score=43.35 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=17.8
Q ss_pred CcEEEEccCCCChHHHHHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALLCMLQ 520 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLpiL~ 520 (1689)
.-+++++|||+|||-.+.--+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 44789999999999887655543
No 375
>PRK09183 transposase/IS protein; Provisional
Probab=68.06 E-value=7 Score=46.06 Aligned_cols=47 Identities=26% Similarity=0.527 Sum_probs=30.5
Q ss_pred HhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhh
Q psy14582 494 LESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 552 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi 552 (1689)
+..|+++++.+|+|+|||..+..-...... .+.++.|+ +..+|..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~-----------~G~~v~~~-~~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR-----------AGIKVRFT-TAADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-----------cCCeEEEE-eHHHHHHHH
Confidence 347899999999999999776654333222 23466665 445565443
No 376
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=67.74 E-value=2.6 Score=55.27 Aligned_cols=44 Identities=20% Similarity=0.050 Sum_probs=32.5
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
..+++++||||||||..+++|-|-... .-+|++=|--|+.....
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~~-------------~S~VV~DpKGEl~~~Ta 201 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFWE-------------DSVVVHDIKLENYELTS 201 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhCC-------------CCEEEEeCcHHHHHHHH
Confidence 467999999999999999999875421 13666677767765443
No 377
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=67.65 E-value=19 Score=48.72 Aligned_cols=68 Identities=7% Similarity=0.194 Sum_probs=54.9
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.++++++.+||+.-+..+++.|..++...+.. ..-+. +|+.|+..+++.
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~------------------------------~~~~~-yh~~l~~~ekee 172 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSL------------------------------DVLVV-YHSALPTKEKEE 172 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCc------------------------------ceeee-eccccchHHHHH
Confidence 46899999999999999999998865443311 11122 799999999999
Q ss_pred HHHHHhcCCeEEEEEcchh
Q psy14582 997 VEDLFADRHIQVLVSTATL 1015 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT~vl 1015 (1689)
+++.|.+|..+|||+|+.+
T Consensus 173 ~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 173 ALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHhcCCccEEEEeHHH
Confidence 9999999999999999753
No 378
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=67.62 E-value=4 Score=50.54 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=21.0
Q ss_pred hcCCcEEEEccCCCChHHHHHHHHHHHHh
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLCMLQEIG 523 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLpiL~~l~ 523 (1689)
..+..+|+++|||||||-.. -.+++.+.
T Consensus 147 ~~~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred hcCCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 35678999999999999654 44556554
No 379
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=67.49 E-value=4.9 Score=57.12 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=49.4
Q ss_pred HHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccccc
Q psy14582 493 ALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDE 560 (1689)
Q Consensus 493 al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~kde 560 (1689)
+...+.+++|.|-.|||||.+-..-+++.+.... +. .--++++|+.|++=+.++..++..++
T Consensus 12 ~~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~----~~--~v~~ILvvTFT~aAa~Emk~RI~~~L 73 (1139)
T COG1074 12 ASPPGQSVLVEASAGTGKTFVLAERVLRLLLEGG----PL--DVDEILVVTFTKAAAAEMKERIRDRL 73 (1139)
T ss_pred hcCCCCcEEEEEcCCCCchhHHHHHHHHHHhhcC----CC--ChhHeeeeeccHHHHHHHHHHHHHHH
Confidence 4457889999999999999999999999888631 11 22479999999999999987766543
No 380
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=67.49 E-value=44 Score=41.58 Aligned_cols=109 Identities=21% Similarity=0.256 Sum_probs=53.2
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHH--hhcccCCCCCCCC-----------------CeEEEEEccchhhhHhhhhcc
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEI--GKHINADGTINAD-----------------EFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l--~~~~~~~g~~~~~-----------------~~kvl~laPtreLa~Qi~~~f 556 (1689)
.++.+.+.+|||.|||-.-.=.+.+.. .....- +-+..+ +.-+.++.+.++|...+..-
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kV-aiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKV-AIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcce-EEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 488999999999999976332222222 111000 000000 11133334445555444311
Q ss_pred cccchh-hccCCCc--hHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHH
Q psy14582 557 GKDEIH-LLHDERG--PVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLL 609 (1689)
Q Consensus 557 ~kde~h-ll~de~g--~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l 609 (1689)
+.++ .+.|-.| ..-.+.++++...+.....--..+.+|||.. ..++.+.+
T Consensus 280 --~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~ 332 (407)
T COG1419 280 --RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEII 332 (407)
T ss_pred --hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHH
Confidence 1223 3446433 3334445555555555544456777999965 44555543
No 381
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=67.38 E-value=15 Score=42.13 Aligned_cols=90 Identities=20% Similarity=0.312 Sum_probs=50.5
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccch---hHHH--------------HHhhccccCC
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR---SLVQ--------------EMVGNFGKDE 816 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r---~L~~--------------q~v~liIiDE 816 (1689)
-|+.+.-|+|+|||.. +.++...+.+. .++.+++|+.... ..+. +..++++||.
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~--------~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDD 105 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQ--------HPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDD 105 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHH--------CTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEET
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhc--------cccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEec
Confidence 3567778999999984 23333333321 2367899987532 1111 1379999999
Q ss_pred ceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCC
Q psy14582 817 IHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLP 856 (1689)
Q Consensus 817 iHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~ 856 (1689)
+|.+.+... .-+.++ .+..... ..+.++|+.|...|
T Consensus 106 i~~l~~~~~-~q~~lf-~l~n~~~--~~~k~li~ts~~~P 141 (219)
T PF00308_consen 106 IQFLAGKQR-TQEELF-HLFNRLI--ESGKQLILTSDRPP 141 (219)
T ss_dssp GGGGTTHHH-HHHHHH-HHHHHHH--HTTSEEEEEESS-T
T ss_pred chhhcCchH-HHHHHH-HHHHHHH--hhCCeEEEEeCCCC
Confidence 999875422 223332 2222222 23557777776766
No 382
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=67.27 E-value=11 Score=36.62 Aligned_cols=58 Identities=17% Similarity=0.092 Sum_probs=44.1
Q ss_pred HHHHHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCc
Q psy14582 1195 AALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSG 1257 (1689)
Q Consensus 1195 al~~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~ 1257 (1689)
|+..|...|+|+.+ + .+|++|+.+|.++++|.-.+++...........+++.+++..+
T Consensus 2 A~~~L~~LgAld~~---~--~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls 59 (92)
T smart00847 2 ALELLYELGALDDD---G--RLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLS 59 (92)
T ss_pred HHHHHHHCCCcCCC---C--CcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhc
Confidence 67788999999632 3 7999999999999999999998877543023457777766543
No 383
>PF13245 AAA_19: Part of AAA domain
Probab=67.16 E-value=12 Score=35.53 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=33.4
Q ss_pred eeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhcc
Q psy14582 756 VSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 812 (1689)
Q Consensus 756 v~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~li 812 (1689)
+++..|.|+|||....-.+...+... ...+.++++++|++..+.++.+.+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~-------~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAAR-------ADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHh-------cCCCCeEEEECCCHHHHHHHHHHH
Confidence 34589999999976554433333110 011568999999999999865555
No 384
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=67.15 E-value=6.9 Score=55.17 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=78.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHH
Q psy14582 918 RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLV 997 (1689)
Q Consensus 918 ~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~v 997 (1689)
.+++||||.++..|..++..|.+....... ..-...+...|++.+ ++..+
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~----------------------------~~~~~~v~~itg~~~--~~~~l 747 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYG----------------------------QVEDDAVIKITGSID--KPDQL 747 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcC----------------------------CcCccceEEEeCCcc--chHHH
Confidence 478999999999999999888764211000 000112233466664 56779
Q ss_pred HHHHhcCCe-EEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcc
Q psy14582 998 EDLFADRHI-QVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRW 1076 (1689)
Q Consensus 998 e~~F~~g~i-~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~ 1076 (1689)
++.|+++.. +|+|+++++.+|+|+|.|.+| | + +.+.
T Consensus 748 i~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~v-----------------V----------------f------~rpv---- 784 (1123)
T PRK11448 748 IRRFKNERLPNIVVTVDLLTTGIDVPSICNL-----------------V----------------F------LRRV---- 784 (1123)
T ss_pred HHHHhCCCCCeEEEEecccccCCCcccccEE-----------------E----------------E------ecCC----
Confidence 999999987 799999999999999999988 2 2 2221
Q ss_pred eecCHHHHHHHhcccCCCCCC-CccEEEEEe
Q psy14582 1077 VELGALDVLQMLGRAGRPQYD-TKGEGVLIT 1106 (1689)
Q Consensus 1077 ~~~s~~d~lQm~GRAGR~g~d-~~G~~iil~ 1106 (1689)
.|...|+||+||+.|...+ .+-.++|+-
T Consensus 785 --kS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 785 --RSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred --CCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 3688999999999997532 233444443
No 385
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=66.95 E-value=6.4 Score=46.48 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=20.5
Q ss_pred HhcCCcEEEEccCCCChHHHHHHH
Q psy14582 494 LESDENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~lLp 517 (1689)
+..|.++++.+|+|+|||..+..-
T Consensus 18 l~~g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 18 LKSGYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred HhcCCeEEEEcCCCCCHHHHHHHH
Confidence 347899999999999999998543
No 386
>KOG1133|consensus
Probab=66.85 E-value=9 Score=49.57 Aligned_cols=46 Identities=26% Similarity=0.284 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHH---HhcCCcEEEEccCCCChHHHHHHHHHHHHhhc
Q psy14582 480 KTLNRIQSRLCKSA---LESDENLLLCAPTGAGKTNVALLCMLQEIGKH 525 (1689)
Q Consensus 480 ~~~tpiQ~~aip~a---l~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~ 525 (1689)
.+|+.||...+..+ +..|+--|...|||+|||+.-+=..|.-|..+
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 46899999887765 45788779999999999998776666666543
No 387
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=66.66 E-value=7.5 Score=44.05 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=18.5
Q ss_pred eeEeecCCCchHHHHHHHHHHHhhh
Q psy14582 756 VSFRLPRGAGKTNVALLCMLQEIGK 780 (1689)
Q Consensus 756 v~~~aPTGsGKT~~~lL~il~~i~~ 780 (1689)
+++..|.|+|||+.++...++.+..
T Consensus 22 v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 22 VIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp EEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh
Confidence 5566899999999999888877653
No 388
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=66.62 E-value=11 Score=43.92 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=20.2
Q ss_pred HHhcCCcEEEEccCCCChHHHHHHHHHHHHh
Q psy14582 493 ALESDENLLLCAPTGAGKTNVALLCMLQEIG 523 (1689)
Q Consensus 493 al~~g~nvLv~APTGSGKT~a~lLpiL~~l~ 523 (1689)
++...-++++.||+|||||..- +-+|..+.
T Consensus 9 l~~~~fr~viIG~sGSGKT~li-~~lL~~~~ 38 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTTLI-KSLLYYLR 38 (241)
T ss_pred hcCCCceEEEECCCCCCHHHHH-HHHHHhhc
Confidence 3434458999999999999654 33344443
No 389
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=66.39 E-value=7.4 Score=42.90 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=27.7
Q ss_pred EEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 500 LLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 500 vLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
+++.+|+|+|||..++--+...+. .+.+++|++.. +-..++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-----------~g~~v~~~s~e-~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-----------RGEPGLYVTLE-ESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----------CCCcEEEEECC-CCHHHHH
Confidence 689999999999877655544442 23478888643 3344433
No 390
>PRK08727 hypothetical protein; Validated
Probab=66.15 E-value=19 Score=41.69 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=35.7
Q ss_pred ceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHH---------HhhccccCCceeecCCc
Q psy14582 755 PVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE---------MVGNFGKDEIHLLHDER 824 (1689)
Q Consensus 755 pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q---------~v~liIiDEiHll~d~r 824 (1689)
++.+.-|+|+|||..... +...... .+.+++|+.-. ++... .++++|+||+|.+....
T Consensus 43 ~l~l~G~~G~GKThL~~a-~~~~~~~----------~~~~~~y~~~~-~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~ 109 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALA-LCAAAEQ----------AGRSSAYLPLQ-AAAGRLRDALEALEGRSLVALDGLESIAGQR 109 (233)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHH----------cCCcEEEEeHH-HhhhhHHHHHHHHhcCCEEEEeCcccccCCh
Confidence 477888999999965432 1122211 24577776542 22211 26889999999887543
No 391
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=65.89 E-value=9.9 Score=42.90 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=25.3
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccc
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPt 545 (1689)
...+++++++||||||......+...+..+ .....++.++=|.
T Consensus 37 ~~~h~li~G~tgsGKS~~l~~ll~~l~~~~-------~p~~~~l~iiD~k 79 (205)
T PF01580_consen 37 KNPHLLIAGATGSGKSTLLRTLLLSLALTY-------SPDDVQLYIIDPK 79 (205)
T ss_dssp GS-SEEEE--TTSSHHHHHHHHHHHHHTT---------TTTEEEEEE-TT
T ss_pred CCceEEEEcCCCCCccHHHHHHHHHHHHHh-------cCCccEEEEEcCC
Confidence 456999999999999988776555555432 1244565555554
No 392
>PRK13764 ATPase; Provisional
Probab=65.77 E-value=10 Score=49.72 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=21.7
Q ss_pred HHhcCCcEEEEccCCCChHHHHHHHHHHHHh
Q psy14582 493 ALESDENLLLCAPTGAGKTNVALLCMLQEIG 523 (1689)
Q Consensus 493 al~~g~nvLv~APTGSGKT~a~lLpiL~~l~ 523 (1689)
+...++++|+++|||||||-.. -.++..+.
T Consensus 253 l~~~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 253 LEERAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred HHhcCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3346789999999999999644 44445543
No 393
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=65.64 E-value=3.3 Score=54.95 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=31.3
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHh
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 551 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Q 551 (1689)
.++++++||||||||..+++|-+-... ..+|++=|--|+...
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~~-------------gS~VV~DpKGE~~~~ 180 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTFK-------------GSVIALDVKGELFEL 180 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcCC-------------CCEEEEeCCchHHHH
Confidence 468999999999999999999754321 146776776666654
No 394
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=65.59 E-value=7.7 Score=43.72 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=17.5
Q ss_pred cEEEEccCCCChHHHHHHHHHHHHh
Q psy14582 499 NLLLCAPTGAGKTNVALLCMLQEIG 523 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lLpiL~~l~ 523 (1689)
-+++++|||||||-.. ..++..+.
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhh
Confidence 4789999999999875 33445443
No 395
>PRK06893 DNA replication initiation factor; Validated
Probab=65.47 E-value=27 Score=40.32 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=16.3
Q ss_pred CcEEEEccCCCChHHHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLpi 518 (1689)
..+++++|+|+|||.-+....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~ 60 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVS 60 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 447999999999997655443
No 396
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=65.40 E-value=22 Score=43.97 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=19.4
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQ 520 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~ 520 (1689)
.++.+++++|||+|||-...--+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5788899999999999776544433
No 397
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=65.23 E-value=24 Score=50.13 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=79.1
Q ss_pred HHHHHHhcCCcEEEEccCCCChHHHHHHHH-HHHHhhc---------c----------------cC--C---C------C
Q psy14582 489 LCKSALESDENLLLCAPTGAGKTNVALLCM-LQEIGKH---------I----------------NA--D---G------T 531 (1689)
Q Consensus 489 aip~al~~g~nvLv~APTGSGKT~a~lLpi-L~~l~~~---------~----------------~~--~---g------~ 531 (1689)
.|..++..+..++++|+||||||. .+|. +..+... + .. + | .
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf~~ 158 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFND 158 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecCcc
Confidence 344456566778999999999999 5773 3322110 0 00 0 1 0
Q ss_pred CCCCCeEEEEEccchhhhHhhhhcccccchhhccCCCc-hHHHHHHHH-HHHHHhhcccCceEEEEeecCCCHHHHHHHH
Q psy14582 532 INADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERG-PVLEALIAR-TIRNIEATQEDVRLVGLSATLPNYKDVATLL 609 (1689)
Q Consensus 532 ~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll~de~g-~~le~~~~~-~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l 609 (1689)
....+.+++|++|-+-|..=+...+-...-++|.||++ +++++.|.. .+..+-...+..|++++|||++. ..+.+++
T Consensus 159 ~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid~-e~fs~~F 237 (1294)
T PRK11131 159 QVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDP-ERFSRHF 237 (1294)
T ss_pred ccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCCH-HHHHHHc
Confidence 11235678888888766443333333445568888888 577765543 22333223357899999999963 4555554
Q ss_pred hhCCCCCceeecCCCccccceeEEEEe
Q psy14582 610 RIKPETGLFYFDNSFRPVALEQQYIGV 636 (1689)
Q Consensus 610 ~~~~~~~~~~~~~~~r~~~l~~~~~~~ 636 (1689)
.. .. ++....+..+++..|...
T Consensus 238 ~~---ap--vI~V~Gr~~pVei~y~p~ 259 (1294)
T PRK11131 238 NN---AP--IIEVSGRTYPVEVRYRPI 259 (1294)
T ss_pred CC---CC--EEEEcCccccceEEEeec
Confidence 32 12 233334445555555544
No 398
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=65.09 E-value=46 Score=39.59 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCChHHHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLCML 519 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL 519 (1689)
.+-+++++|||+|||-...-.+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35577889999999987655443
No 399
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=64.61 E-value=23 Score=49.02 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=72.2
Q ss_pred eEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHH
Q psy14582 920 QLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVED 999 (1689)
Q Consensus 920 ~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~ 999 (1689)
+++||+.-.....-+...+.... ..+..++|+++..+|....+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~-------------------------------------~~~~~ldG~~~~~~r~~~i~ 755 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALG-------------------------------------IKYVRLDGSTPAKRRQELID 755 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcC-------------------------------------CcEEEEeCCCChhhHHHHHH
Confidence 89999998877766666665421 22445699999999999999
Q ss_pred HHhcC-CeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCccee
Q psy14582 1000 LFADR-HIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVE 1078 (1689)
Q Consensus 1000 ~F~~g-~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~ 1078 (1689)
.|.++ ...|+ +++|.....|+||-+-..|| .||+.
T Consensus 756 ~f~~~~~~~v~----------------------------------lls~kagg~glnLt~a~~vi----~~d~~------ 791 (866)
T COG0553 756 RFNADEEEKVF----------------------------------LLSLKAGGLGLNLTGADTVI----LFDPW------ 791 (866)
T ss_pred HhhcCCCCceE----------------------------------EEEecccccceeecccceEE----Eeccc------
Confidence 99986 33333 15555555566655333332 34542
Q ss_pred cCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1079 LGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1079 ~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
..+....|...||-|-|....=.++-+...+.
T Consensus 792 wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 792 WNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred cChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 34777888888888877555556665555544
No 400
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=64.47 E-value=7.8 Score=47.87 Aligned_cols=28 Identities=18% Similarity=0.493 Sum_probs=21.5
Q ss_pred hcCCcEEEEccCCCChHHHHHHHHHHHHh
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLCMLQEIG 523 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLpiL~~l~ 523 (1689)
..+..+++++|||||||-.. -.++..+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 36789999999999999764 44556554
No 401
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.31 E-value=57 Score=42.00 Aligned_cols=251 Identities=18% Similarity=0.181 Sum_probs=0.0
Q ss_pred eEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH----------------------------
Q psy14582 757 SFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM---------------------------- 808 (1689)
Q Consensus 757 ~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~---------------------------- 808 (1689)
.|.+.||+|||++..--++....+. -..-++.+..-..+...
T Consensus 1 lf~matgsgkt~~ma~lil~~y~kg----------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ik 70 (812)
T COG3421 1 LFEMATGSGKTLVMAGLILECYKKG----------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIK 70 (812)
T ss_pred CcccccCCChhhHHHHHHHHHHHhc----------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeee
Q ss_pred -----------------------------------------hhcccc-CCceee--------cC--CchhHHHHHHHHHH
Q psy14582 809 -----------------------------------------VGNFGK-DEIHLL--------HD--ERGPVLEALIARTI 836 (1689)
Q Consensus 809 -----------------------------------------v~liIi-DEiHll--------~d--~rG~~lE~iv~r~~ 836 (1689)
.+++.+ ||+|.| .| ..-.-||+.+.-..
T Consensus 71 kvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~ 150 (812)
T COG3421 71 KVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL 150 (812)
T ss_pred eecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH
Q ss_pred HHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHh
Q psy14582 837 RNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHA 916 (1689)
Q Consensus 837 ~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~ 916 (1689)
+ ..++--++.+|||.|.-.+|..-.........-.-.-+..-..-..+-...+.....+.+.++....|..++...
T Consensus 151 ~----~nkd~~~lef~at~~k~k~v~~ky~dkiv~~y~lk~f~e~gytk~i~~~s~~~nl~tr~l~alv~s~yr~~la~~ 226 (812)
T COG3421 151 E----QNKDNLLLEFSATIPKEKSVEDKYEDKIVVTYTLKQFSEDGYTKNIYSLSYNKNLETRFLGALVSSLYRELLAQH 226 (812)
T ss_pred h----cCCCceeehhhhcCCccccHHHHhccceEEeeeHHHhhhhcchhhhhhhhccchHHHHHHHHHHHHHHHHHHHHh
Q ss_pred CC---CeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccc-----hhhhcccCCceeEeccC
Q psy14582 917 GR---NQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKN-----GELRDLLPYGFAIHHAG 988 (1689)
Q Consensus 917 ~~---~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~-----~~L~~~l~~Gi~~hHag 988 (1689)
-+ +|||.|-+-|-+-.+.-..=-....+.-....+-.-...+............+ +.|.-++...++.----
T Consensus 227 ~~i~fkpvilfks~~i~eska~y~~f~~~~enl~~dd~enl~~~s~~~~n~a~~~f~~k~n~~~~l~~~~~nkf~~~~~i 306 (812)
T COG3421 227 HNIEFKPVILFKSERIEESKANYERFNAFLENLSFDDLENLFNHSRNAFNKAAKSFFDKQNHTPNLVALLQNKFKESVQI 306 (812)
T ss_pred cCcccceeEEeecchhhhhHhhHHHHHHHHhhcchhhhHHHHhhhhHhHHHHHHHhhccccchHHHHHHHhcchhhhhee
Q ss_pred CCHHHHHHHHHHH-------hcCCeEEEEEcchhccCCCC
Q psy14582 989 MTRVDRTLVEDLF-------ADRHIQVLVSTATLAWGVNL 1021 (1689)
Q Consensus 989 l~~~dR~~ve~~F-------~~g~i~VLVaT~vl~rGIDI 1021 (1689)
+...+...-+... +++-++++.+-+.+-+|-|+
T Consensus 307 ~n~~ek~~~e~~lllnsled~dnpir~if~vd~lnegwdv 346 (812)
T COG3421 307 NNNNEKELEESMLLLNSLEDRDNPIRVIFSVDKLNEGWDV 346 (812)
T ss_pred cCCCccchHHHHHHHhhhhhcCCCeEEEEEeecccccchh
No 402
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=64.22 E-value=30 Score=48.47 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=48.7
Q ss_pred HhccCCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 474 HAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 474 ~~f~g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
..+..-..|++-|..++..+...++-+++.++-|+|||.+.-. +...+.. .|.+++-++||---|..+.
T Consensus 374 a~~~~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~e~----------~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 374 ATFARHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAWEA----------AGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred HHHhcCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHHHH----------cCCeEEEEcCcHHHHHHHH
Confidence 3333335699999999987764456679999999999965432 3333321 3568999999987776654
No 403
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=64.21 E-value=8.5 Score=44.67 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=32.7
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
.|..+++.+|+|||||.-++--+...+. .+.+++|++ +-+-..|+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~-----------~ge~~lyvs-~ee~~~~i~ 65 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ-----------MGEPGIYVA-LEEHPVQVR 65 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-----------cCCcEEEEE-eeCCHHHHH
Confidence 6788999999999999877655555443 234799987 344444544
No 404
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=64.17 E-value=26 Score=41.91 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
+.++++.+|+|+|||.++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 45899999999999988744
No 405
>PRK05973 replicative DNA helicase; Provisional
Probab=63.93 E-value=8.8 Score=44.54 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=28.5
Q ss_pred HhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 494 LESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+..|.-+++.|++|+|||.-++--+.+.+. .+.+++|++-
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-----------~Ge~vlyfSl 100 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMK-----------SGRTGVFFTL 100 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-----------cCCeEEEEEE
Confidence 346778899999999999887655554443 2347888753
No 406
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.82 E-value=6.3 Score=53.29 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=42.4
Q ss_pred ecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHH
Q psy14582 743 VSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 807 (1689)
Q Consensus 743 ~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q 807 (1689)
+.+-+-.....-...+.+|||+|||++.+.+.+...... ....|++|++.|..=..|
T Consensus 19 m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~--------~~~~kIiy~sRThsQl~q 75 (705)
T TIGR00604 19 MRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK--------PEVRKIIYASRTHSQLEQ 75 (705)
T ss_pred HHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc--------cccccEEEEcccchHHHH
Confidence 444444555667788999999999999999998876532 123689999998776655
No 407
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=63.56 E-value=17 Score=41.61 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=35.7
Q ss_pred cccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHH----HHHhhccccCCceeecC
Q psy14582 752 TILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLV----QEMVGNFGKDEIHLLHD 822 (1689)
Q Consensus 752 ~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~----~q~v~liIiDEiHll~d 822 (1689)
...|+.+.-|+|+|||.....-.-+... .+..++|+....... ....+++++||+|.+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~-----------~~~~~~~i~~~~~~~~~~~~~~~~~liiDdi~~l~~ 104 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASY-----------GGRNARYLDAASPLLAFDFDPEAELYAVDDVERLDD 104 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh-----------CCCcEEEEehHHhHHHHhhcccCCEEEEeChhhcCc
Confidence 4457889999999999765422222111 134555555422111 11257899999998854
No 408
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=63.55 E-value=8.5 Score=51.66 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=55.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHhhhhcc-ccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCC-CHHHHH
Q psy14582 918 RNQLLVFVHSRKETGKTARAIRDMCLEKD-TLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGM-TRVDRT 995 (1689)
Q Consensus 918 ~~~vLVFv~srk~~~~~a~~L~~~~~~~~-~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl-~~~dR~ 995 (1689)
+.+++|||.+|..|......|.+...... .....+.........+..+.+.+ ... +..- ......
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~---------~~~----~~~~~~~~~~~ 580 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHI---------RTK----FDKSDGFEIYY 580 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHh---------ccc----cccchhhhHHH
Confidence 47899999999999999998876543220 00000000000011111111111 000 0000 011334
Q ss_pred HHHHHHhc-CCeEEEEEcchhccCCCCCCccee
Q psy14582 996 LVEDLFAD-RHIQVLVSTATLAWGVNLPAHTVV 1027 (1689)
Q Consensus 996 ~ve~~F~~-g~i~VLVaT~vl~rGIDIp~V~~V 1027 (1689)
.+.+.|++ +.+++||.++++..|+|.|.+..+
T Consensus 581 ~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tL 613 (667)
T TIGR00348 581 KDLERFKKEENPKLLIVVDMLLTGFDAPILNTL 613 (667)
T ss_pred HHHHHhcCCCCceEEEEEcccccccCCCccceE
Confidence 67778876 689999999999999999988776
No 409
>PRK05642 DNA replication initiation factor; Validated
Probab=63.36 E-value=19 Score=41.78 Aligned_cols=58 Identities=9% Similarity=0.146 Sum_probs=36.6
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHH---------HhhccccCCceeecCC
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE---------MVGNFGKDEIHLLHDE 823 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q---------~v~liIiDEiHll~d~ 823 (1689)
.|+.+.-|+|+|||.... ++...+.. .+.+++|+... ++... .++++++|++|.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~-a~~~~~~~----------~~~~v~y~~~~-~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~ 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ-AACLRFEQ----------RGEPAVYLPLA-ELLDRGPELLDNLEQYELVCLDDLDVIAGK 112 (234)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh----------CCCcEEEeeHH-HHHhhhHHHHHhhhhCCEEEEechhhhcCC
Confidence 467788899999998632 23222221 24577887653 33221 2578999999988653
No 410
>KOG0924|consensus
Probab=63.32 E-value=41 Score=43.67 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=28.7
Q ss_pred cccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCccccceeEEEEe
Q psy14582 586 TQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGV 636 (1689)
Q Consensus 586 ~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~ 636 (1689)
.....+++..|||+. ...+..|.+ +|..|.-..|.-|.+..+...
T Consensus 497 rRrdlKliVtSATm~-a~kf~nfFg-----n~p~f~IpGRTyPV~~~~~k~ 541 (1042)
T KOG0924|consen 497 RRRDLKLIVTSATMD-AQKFSNFFG-----NCPQFTIPGRTYPVEIMYTKT 541 (1042)
T ss_pred hhccceEEEeecccc-HHHHHHHhC-----CCceeeecCCccceEEEeccC
Confidence 345789999999985 456777753 355555566665554444443
No 411
>PRK05642 DNA replication initiation factor; Validated
Probab=63.28 E-value=19 Score=41.74 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=26.5
Q ss_pred CcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhH
Q psy14582 498 ENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ 550 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~ 550 (1689)
.++++++|+|+|||--.. .+.+.+.. .+.+++|+.. .++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~-a~~~~~~~----------~~~~v~y~~~-~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ-AACLRFEQ----------RGEPAVYLPL-AELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh----------CCCcEEEeeH-HHHHh
Confidence 568999999999997643 33344432 2347888654 55554
No 412
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=63.20 E-value=6.9 Score=50.32 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHhcCC-cEEEEccCCCChHHHHHHHHHHHH
Q psy14582 483 NRIQSRLCKSALESDE-NLLLCAPTGAGKTNVALLCMLQEI 522 (1689)
Q Consensus 483 tpiQ~~aip~al~~g~-nvLv~APTGSGKT~a~lLpiL~~l 522 (1689)
.+-|.+.+..++...+ -+++++|||||||-... .+++.+
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~-a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTLY-AALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH-HHHhcc
Confidence 5556666666654444 47899999999997653 334544
No 413
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=63.20 E-value=11 Score=38.94 Aligned_cols=21 Identities=48% Similarity=0.694 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCChHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLp 517 (1689)
++.+++.+|+|+|||..+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 678999999999999654433
No 414
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=63.05 E-value=7 Score=35.06 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=33.2
Q ss_pred cccCCCCCHHHHHHHHhcCC-CchhhccCChhhhhhhhcCChhhHH
Q psy14582 1364 LRQFRKIPEEIIKKIEKKNF-PWERLYDLGPNEIGELIRVPKLGKT 1408 (1689)
Q Consensus 1364 LrQ~~~i~~~~i~~~~~~~~-~~~~l~dl~~~el~~ll~~~~~g~~ 1408 (1689)
|.++||+++..+++|.+.|+ ++++++..++++ |...+++|..
T Consensus 7 L~~I~Gig~~~a~~L~~~G~~t~~~l~~a~~~~---L~~i~Gig~~ 49 (60)
T PF14520_consen 7 LLSIPGIGPKRAEKLYEAGIKTLEDLANADPEE---LAEIPGIGEK 49 (60)
T ss_dssp HHTSTTCHHHHHHHHHHTTCSSHHHHHTSHHHH---HHTSTTSSHH
T ss_pred hccCCCCCHHHHHHHHhcCCCcHHHHHcCCHHH---HhcCCCCCHH
Confidence 56899999999999999987 788888876655 4556666654
No 415
>PRK08084 DNA replication initiation factor; Provisional
Probab=62.99 E-value=18 Score=41.90 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=36.2
Q ss_pred cccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccch------hHHHH--HhhccccCCceeecCC
Q psy14582 752 TILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR------SLVQE--MVGNFGKDEIHLLHDE 823 (1689)
Q Consensus 752 ~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r------~L~~q--~v~liIiDEiHll~d~ 823 (1689)
...++.+.-|+|+|||..... +...... .+.+++|+.-.. ++... .+++++|||+|.+...
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a-~~~~~~~----------~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~ 112 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHA-ACAELSQ----------RGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGD 112 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHHh----------CCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCC
Confidence 334678889999999976542 1222211 245667765432 11111 2578999999988653
No 416
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=62.94 E-value=8.1 Score=44.34 Aligned_cols=39 Identities=28% Similarity=0.508 Sum_probs=28.0
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|..+++.+|+|||||.-++--+.+.+.+. +-+++|++-
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~----------ge~vlyvs~ 56 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF----------GEKVLYVSF 56 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH----------T--EEEEES
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc----------CCcEEEEEe
Confidence 578899999999999988766555555531 347888873
No 417
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=62.53 E-value=9.1 Score=48.30 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=32.7
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
.+++++.|+||||||.. +..++..+... +.++|++=|..++....+
T Consensus 42 ~~h~~i~g~tGsGKt~~-i~~l~~~~~~~----------~~~~vi~D~kg~~~~~~~ 87 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQ-IRELLASIRAR----------GDRAIIYDPNGGFVSKFY 87 (410)
T ss_pred hccEEEEcCCCCCHHHH-HHHHHHHHHhc----------CCCEEEEeCCcchhHhhc
Confidence 57999999999999975 44444444432 237888888888775543
No 418
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=61.91 E-value=3.2 Score=55.11 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=32.7
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHh
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 551 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Q 551 (1689)
.++++++||||||||..+++|.|-.- +..+|++=|--|+..-
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL~~-------------~~S~VV~D~KGE~~~~ 216 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLLSW-------------GHSSVITDLKGELWAL 216 (636)
T ss_pred CceEEEEecCCCCCceEEEccchhhC-------------CCCEEEEeCcHHHHHH
Confidence 47899999999999999999976421 1257888888888644
No 419
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=61.75 E-value=16 Score=45.37 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHH-----hcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhh
Q psy14582 481 TLNRIQSRLCKSAL-----ESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 552 (1689)
Q Consensus 481 ~~tpiQ~~aip~al-----~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi 552 (1689)
.||+-|+.++..++ ..+.++.+.+|-|+|||...-.- ...+.. .+..++++|||---|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i-~~~~~~----------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAI-IDYLRS----------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHH-HHHhcc----------ccceEEEecchHHHHHhc
Confidence 47888999988763 36889999999999999765322 122221 345899999998877766
No 420
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=61.74 E-value=15 Score=50.46 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=35.8
Q ss_pred cccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHH
Q psy14582 752 TILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 807 (1689)
Q Consensus 752 ~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q 807 (1689)
....+.+.|+||+|||++++-.++...... +..+.|+++|+.++...
T Consensus 58 ~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~---------~~~~fii~vp~~aI~eg 104 (986)
T PRK15483 58 DKANIDIKMETGTGKTYVYTRLMYELHQKY---------GLFKFIIVVPTPAIKEG 104 (986)
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHHHHc---------CCcEEEEEeCCHHHHHH
Confidence 346788899999999999987776654332 35789999999877554
No 421
>PRK04296 thymidine kinase; Provisional
Probab=61.04 E-value=9.2 Score=42.84 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=24.9
Q ss_pred CcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 498 ENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.=.++++|.|+|||..++--+.+... .+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~-----------~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE-----------RGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH-----------cCCeEEEEec
Confidence 34688999999999776655544333 2347888866
No 422
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=60.97 E-value=19 Score=42.58 Aligned_cols=63 Identities=21% Similarity=0.062 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
..|+++|--+.- ++..|+ |+.-.||=|||+++.+|+.-... .|..+=+++...-||..=+..+
T Consensus 76 ~~p~~vQll~~l-~L~~G~--laEm~TGEGKTli~~l~a~~~AL-----------~G~~V~vvT~NdyLA~RD~~~~ 138 (266)
T PF07517_consen 76 LRPYDVQLLGAL-ALHKGR--LAEMKTGEGKTLIAALPAALNAL-----------QGKGVHVVTSNDYLAKRDAEEM 138 (266)
T ss_dssp ----HHHHHHHH-HHHTTS--EEEESTTSHHHHHHHHHHHHHHT-----------TSS-EEEEESSHHHHHHHHHHH
T ss_pred CcccHHHHhhhh-hcccce--eEEecCCCCcHHHHHHHHHHHHH-----------hcCCcEEEeccHHHhhccHHHH
Confidence 468899988874 453444 99999999999999888754443 2346888888999998765443
No 423
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=60.96 E-value=8.5 Score=43.52 Aligned_cols=29 Identities=38% Similarity=0.497 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCcEEEEccCCCChHHHHH
Q psy14582 487 SRLCKSALESDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 487 ~~aip~al~~g~nvLv~APTGSGKT~a~l 515 (1689)
++|+..|.-.++|+|+.+|.|+|||..+-
T Consensus 12 KrAL~iAAaG~h~lLl~GppGtGKTmlA~ 40 (206)
T PF01078_consen 12 KRALEIAAAGGHHLLLIGPPGTGKTMLAR 40 (206)
T ss_dssp HHHHHHHHHCC--EEEES-CCCTHHHHHH
T ss_pred HHHHHHHHcCCCCeEEECCCCCCHHHHHH
Confidence 45565555578999999999999998763
No 424
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=60.89 E-value=7.4 Score=48.78 Aligned_cols=28 Identities=43% Similarity=0.585 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCcEEEEccCCCChHHHH
Q psy14582 487 SRLCKSALESDENLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 487 ~~aip~al~~g~nvLv~APTGSGKT~a~ 514 (1689)
++|+..+.-.|+|+|+.+|.|||||..+
T Consensus 188 KrAleiAAAGgHnLl~~GpPGtGKTmla 215 (490)
T COG0606 188 KRALEIAAAGGHNLLLVGPPGTGKTMLA 215 (490)
T ss_pred HHHHHHHHhcCCcEEEecCCCCchHHhh
Confidence 3566666657999999999999999765
No 425
>KOG0745|consensus
Probab=60.53 E-value=5.1 Score=49.15 Aligned_cols=20 Identities=50% Similarity=0.720 Sum_probs=17.3
Q ss_pred cCCcEEEEccCCCChHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~l 515 (1689)
..-|+|+.+|||||||+.+-
T Consensus 225 eKSNvLllGPtGsGKTllaq 244 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQ 244 (564)
T ss_pred ecccEEEECCCCCchhHHHH
Confidence 45799999999999998763
No 426
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=60.47 E-value=4.9 Score=53.40 Aligned_cols=43 Identities=23% Similarity=0.046 Sum_probs=32.9
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHh
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 551 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Q 551 (1689)
..+++++.||||||||..+++|-|-... -.+|++=|--|+...
T Consensus 143 g~~hvLviApTrSGKgvg~VIPnLL~~~-------------~S~VV~D~KGEl~~~ 185 (663)
T PRK13876 143 GPEHVLCFAPTRSGKGVGLVVPTLLTWP-------------GSAIVHDIKGENWQL 185 (663)
T ss_pred CCceEEEEecCCCCcceeEehhhHHhCC-------------CCEEEEeCcchHHHH
Confidence 3589999999999999999999764321 147777777777654
No 427
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=59.73 E-value=31 Score=42.07 Aligned_cols=114 Identities=11% Similarity=0.131 Sum_probs=57.9
Q ss_pred CHHHHHHHHHH---HhcC---CcEEEEccCCCChHHHHHHHHHHHHhhcccCC---CCC-------CCCCeEEEEEccc-
Q psy14582 483 NRIQSRLCKSA---LESD---ENLLLCAPTGAGKTNVALLCMLQEIGKHINAD---GTI-------NADEFKIIYVAPM- 545 (1689)
Q Consensus 483 tpiQ~~aip~a---l~~g---~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~---g~~-------~~~~~kvl~laPt- 545 (1689)
+|||...+..+ +.+| +-.|+++|.|.||+..+..-+-..+-...... |.. ....+-..++.|.
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 46666655543 3333 46789999999999887665544333221111 100 1134556677773
Q ss_pred -hhhhHhhhhcccccc---------hhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEe
Q psy14582 546 -RSLVQEMVGNFGKDE---------IHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLS 596 (1689)
Q Consensus 546 -reLa~Qi~~~f~kde---------~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~S 596 (1689)
+..--++++.+.+.. -=++.++++.|-..-...+++.++-.++...+++.|
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 222122222221110 003455666665555555556666555555555544
No 428
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=59.68 E-value=9.7 Score=44.06 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=31.8
Q ss_pred hcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEc---cchhhhHhh
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVA---PMRSLVQEM 552 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~la---PtreLa~Qi 552 (1689)
..|+-++++|++|+|||...+--+.+.+..+ +.+++|++ |..+++..+
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~----------g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ----------GKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCceEEEeCCCCHHHHHHHH
Confidence 3677889999999999977665555544431 34788886 334444443
No 429
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=59.64 E-value=30 Score=42.27 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHhc----CCcEEEEccCCCChHHHHHHHHHH
Q psy14582 483 NRIQSRLCKSALES----DENLLLCAPTGAGKTNVALLCMLQ 520 (1689)
Q Consensus 483 tpiQ~~aip~al~~----g~nvLv~APTGSGKT~a~lLpiL~ 520 (1689)
+|||...+..+... .+.+|+++|.|.|||..+..-.-.
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ 44 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQA 44 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHH
Confidence 56777776655421 346899999999999888766533
No 430
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=59.52 E-value=9.5 Score=45.12 Aligned_cols=41 Identities=20% Similarity=0.502 Sum_probs=27.4
Q ss_pred EEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhh
Q psy14582 500 LLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLV 549 (1689)
Q Consensus 500 vLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa 549 (1689)
.+|.+||||||+- .|+.|... .-+.+..--++||+|++-.+
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~----~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISC----QLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhc----CcccCCCCceEEECCCCCCC
Confidence 3689999999983 23333322 23344556799999998664
No 431
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=59.33 E-value=5.7 Score=47.63 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCChHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLp 517 (1689)
+.=+++++|||||||..++--
T Consensus 4 ~~ii~I~GpTasGKS~LAl~L 24 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHF 24 (300)
T ss_pred CcEEEEECCCccCHHHHHHHH
Confidence 344789999999999987644
No 432
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=59.33 E-value=5.8 Score=40.90 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCChHHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpi 518 (1689)
+++.+++++|+|+|||.....-+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHH
Confidence 45778999999999998875544
No 433
>KOG0349|consensus
Probab=58.93 E-value=6.1 Score=47.88 Aligned_cols=59 Identities=27% Similarity=0.312 Sum_probs=51.0
Q ss_pred CCccHHHHHhcc-CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhc
Q psy14582 466 DKLPRYVQHAFE-DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKH 525 (1689)
Q Consensus 466 ~~Lp~~~~~~f~-g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~ 525 (1689)
.-||+..+..-+ .|.-||.+|.++||.++ .|.|+|..|.||||||-||.+||++.....
T Consensus 8 gv~pel~~a~~e~dw~lptdvqaeaiplil-gggdvlmaaetgsgktgaf~lpilqiv~et 67 (725)
T KOG0349|consen 8 GVLPELGMATDELDWTLPTDVQAEAIPLIL-GGGDVLMAAETGSGKTGAFCLPILQIVWET 67 (725)
T ss_pred CcchHhhhhhhhhccccccccccccccEEe-cCCcEEEEeccCCCCccceehhhHHHHHHH
Confidence 346777666555 89999999999999999 799999999999999999999999877543
No 434
>PRK08181 transposase; Validated
Probab=58.80 E-value=24 Score=41.79 Aligned_cols=63 Identities=16% Similarity=0.308 Sum_probs=38.7
Q ss_pred cccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHH------------------
Q psy14582 746 RWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE------------------ 807 (1689)
Q Consensus 746 ~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q------------------ 807 (1689)
.|+. ....+.+.-|+|+|||.....-. ..+.. .+.+++|+. ..+|+.+
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia-~~a~~----------~g~~v~f~~-~~~L~~~l~~a~~~~~~~~~l~~l~ 166 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIG-LALIE----------NGWRVLFTR-TTDLVQKLQVARRELQLESAIAKLD 166 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHH-HHHHH----------cCCceeeee-HHHHHHHHHHHHhCCcHHHHHHHHh
Confidence 4654 34568888999999997654222 21111 244566654 3334332
Q ss_pred HhhccccCCceeecC
Q psy14582 808 MVGNFGKDEIHLLHD 822 (1689)
Q Consensus 808 ~v~liIiDEiHll~d 822 (1689)
.++++||||++.+..
T Consensus 167 ~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 167 KFDLLILDDLAYVTK 181 (269)
T ss_pred cCCEEEEeccccccC
Confidence 278999999998754
No 435
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=58.76 E-value=13 Score=46.47 Aligned_cols=47 Identities=23% Similarity=0.422 Sum_probs=31.7
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
..+++++.+.||||||. ++-.++..+... +.++|+.=|.-+.....+
T Consensus 14 e~~~~li~G~~GsGKT~-~i~~ll~~~~~~----------g~~~iI~D~kg~~~~~f~ 60 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQ-AIRHLLDQIRAR----------GDRAIIYDPKGEFTERFY 60 (386)
T ss_dssp GGG-EEEEE-TTSSHHH-HHHHHHHHHHHT----------T-EEEEEEETTHHHHHH-
T ss_pred hhCcEEEECCCCCCHHH-HHHHHHHHHHHc----------CCEEEEEECCchHHHHhc
Confidence 35899999999999997 556777776542 347777777777765544
No 436
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=58.42 E-value=12 Score=42.87 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=27.3
Q ss_pred hcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
..|..+++.+|+|+|||..+.--+.+.+. .+.+++|+.-
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-----------~g~~~~~is~ 56 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLR-----------DGDPVIYVTT 56 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHh-----------cCCeEEEEEc
Confidence 36889999999999999876554444332 1236778764
No 437
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=58.00 E-value=12 Score=48.99 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=28.6
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhh
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLV 549 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa 549 (1689)
.+++++.|+||||||.+ +-.++..+.. .+-++|++=|+-+..
T Consensus 176 ~~h~li~G~tGsGKs~~-i~~ll~~~~~----------~g~~~ii~D~~g~~~ 217 (566)
T TIGR02759 176 TQHILIHGTTGSGKSVA-IRKLLRWIRQ----------RGDRAIIYDKGCTFT 217 (566)
T ss_pred ccceEEEcCCCCCHHHH-HHHHHHHHHh----------cCCeEEEEECCCCee
Confidence 47999999999999963 3445555543 234677777765543
No 438
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=57.78 E-value=17 Score=38.55 Aligned_cols=40 Identities=33% Similarity=0.474 Sum_probs=26.7
Q ss_pred EEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhH
Q psy14582 500 LLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ 550 (1689)
Q Consensus 500 vLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~ 550 (1689)
+++++|+|+|||..+..-+..... .+..++|+.....+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-----------~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-----------KGGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-----------cCCEEEEEECCcchHH
Confidence 689999999999877655443322 2347888776555443
No 439
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=57.29 E-value=21 Score=40.69 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=38.7
Q ss_pred cccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHH-------H--HHhhccccCC
Q psy14582 746 RWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLV-------Q--EMVGNFGKDE 816 (1689)
Q Consensus 746 ~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~-------~--q~v~liIiDE 816 (1689)
+|.......++.+.-|+|+|||.....-.-. ... .+..++|+.- ..+. . +..++++|||
T Consensus 31 ~~~~~~~~~~lll~G~~G~GKT~la~~~~~~-~~~----------~~~~~~~i~~-~~~~~~~~~~~~~~~~~~lLvIDd 98 (226)
T TIGR03420 31 QLAAGKGDRFLYLWGESGSGKSHLLQAACAA-AEE----------RGKSAIYLPL-AELAQADPEVLEGLEQADLVCLDD 98 (226)
T ss_pred HHHhcCCCCeEEEECCCCCCHHHHHHHHHHH-HHh----------cCCcEEEEeH-HHHHHhHHHHHhhcccCCEEEEeC
Confidence 4544555677888899999999876532222 111 1234455432 1111 1 1256899999
Q ss_pred ceeecCC
Q psy14582 817 IHLLHDE 823 (1689)
Q Consensus 817 iHll~d~ 823 (1689)
+|.+...
T Consensus 99 i~~l~~~ 105 (226)
T TIGR03420 99 VEAIAGQ 105 (226)
T ss_pred hhhhcCC
Confidence 9988653
No 440
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=56.85 E-value=5.8 Score=52.32 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=32.4
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhh
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 552 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi 552 (1689)
..++++.||||||||..+++|-+- ... .-+|++=|.-|+....
T Consensus 211 ~~H~lv~ApTgsGKgvg~VIPnLL---~~~----------gS~VV~DpKgE~~~~T 253 (623)
T TIGR02767 211 STHMIFFAGSGGFKTTSVVVPTAL---KYG----------GPLVCLDPSTEVAPMV 253 (623)
T ss_pred CceEEEEeCCCCCccceeehhhhh---cCC----------CCEEEEEChHHHHHHH
Confidence 478999999999999999999632 211 1478888887776544
No 441
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=56.85 E-value=14 Score=49.13 Aligned_cols=47 Identities=30% Similarity=0.376 Sum_probs=32.2
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchh--hhHhhh
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS--LVQEMV 553 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtre--La~Qi~ 553 (1689)
..++++|.++||||||..+.+.+.+.+.. +..++++=|-.. |...+.
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~-----------g~~viv~DpKgD~~l~~~~~ 223 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRR-----------GDVVIVIDPKGDADLKRRMR 223 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCCCchHHHHHHH
Confidence 35899999999999998876666555542 235677767653 554443
No 442
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=56.74 E-value=33 Score=42.13 Aligned_cols=36 Identities=22% Similarity=0.157 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHh-c---CCcEEEEccCCCChHHHHHHHH
Q psy14582 483 NRIQSRLCKSALE-S---DENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 483 tpiQ~~aip~al~-~---g~nvLv~APTGSGKT~a~lLpi 518 (1689)
+|||...+..+.. . .+-+|+.+|.|.|||..+..-+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 5677666665442 1 3578999999999999886655
No 443
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=56.49 E-value=15 Score=41.56 Aligned_cols=39 Identities=21% Similarity=0.437 Sum_probs=28.7
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccc
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPt 545 (1689)
.|.=+.+++|+|||||..++-.+.+... .+.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~-----------~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR-----------QGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-----------CCCeEEEEECC
Confidence 4667899999999999988766555432 23478888765
No 444
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=56.19 E-value=7 Score=43.06 Aligned_cols=19 Identities=47% Similarity=0.788 Sum_probs=15.8
Q ss_pred CcEEEEccCCCChHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lL 516 (1689)
-++++++|||+|||..+-.
T Consensus 4 ~~~ll~GpsGvGKT~la~~ 22 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKA 22 (171)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4789999999999986543
No 445
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=56.17 E-value=29 Score=44.40 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=27.4
Q ss_pred CcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHh
Q psy14582 498 ENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 551 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Q 551 (1689)
..+++++|+|+|||..+..- .+.+... ..+.+++|+.. ..+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai-~~~~~~~--------~~~~~v~yi~~-~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAI-GNYILEK--------NPNAKVVYVTS-EKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHHH-HHHHHHh--------CCCCeEEEEEH-HHHHHH
Confidence 45899999999999876443 3444331 02457888744 344433
No 446
>PRK06921 hypothetical protein; Provisional
Probab=56.10 E-value=15 Score=43.49 Aligned_cols=46 Identities=15% Similarity=0.334 Sum_probs=29.9
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhh
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 552 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi 552 (1689)
.+.++++++|||+|||..+. .|.+.+... .+..++|+. ..+|..++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~---------~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRK---------KGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhh---------cCceEEEEE-HHHHHHHH
Confidence 36789999999999997664 344544421 145677765 34555444
No 447
>PHA02244 ATPase-like protein
Probab=56.01 E-value=12 Score=46.01 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=20.2
Q ss_pred HHHhcCCcEEEEccCCCChHHHHH
Q psy14582 492 SALESDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 492 ~al~~g~nvLv~APTGSGKT~a~l 515 (1689)
.++..+.++++.+|||+|||..+.
T Consensus 114 r~l~~~~PVLL~GppGtGKTtLA~ 137 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNHIAE 137 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHHHHH
Confidence 355679999999999999997663
No 448
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=56.01 E-value=12 Score=49.56 Aligned_cols=123 Identities=24% Similarity=0.220 Sum_probs=69.9
Q ss_pred HhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHH
Q psy14582 915 HAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDR 994 (1689)
Q Consensus 915 ~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR 994 (1689)
+..+.||||.+.|....+.++..|...+.....+ +|.-...+-
T Consensus 424 ~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vL-------------------------------------NAk~~~~EA 466 (764)
T PRK12326 424 HETGQPVLVGTHDVAESEELAERLRAAGVPAVVL-------------------------------------NAKNDAEEA 466 (764)
T ss_pred HHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceee-------------------------------------ccCchHhHH
Confidence 3457889999999998888888887654433222 333222222
Q ss_pred HHHHHHHhcCCeEEEEEcchhccCCCCCCcce--eehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCC
Q psy14582 995 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTV--VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 1072 (1689)
Q Consensus 995 ~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~--V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~ 1072 (1689)
..|-++=+ .-.|-|||++++||-||.=-.. ..++.+ -..|-.- || ||.+.+
T Consensus 467 ~IIa~AG~--~gaVTIATNMAGRGTDIkLg~~~~~~~~~V---~~~GGLh------------------VI--gTerhe-- 519 (764)
T PRK12326 467 RIIAEAGK--YGAVTVSTQMAGRGTDIRLGGSDEADRDRV---AELGGLH------------------VI--GTGRHR-- 519 (764)
T ss_pred HHHHhcCC--CCcEEEEecCCCCccCeecCCCcccchHHH---HHcCCcE------------------EE--eccCCc--
Confidence 22322222 3468899999999999851100 000000 0111111 11 333332
Q ss_pred CCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1073 KGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1073 ~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
|..-=.|-.|||||-| .+|.+-.+.+-.+
T Consensus 520 -------SrRID~QLrGRaGRQG--DpGss~f~lSleD 548 (764)
T PRK12326 520 -------SERLDNQLRGRAGRQG--DPGSSVFFVSLED 548 (764)
T ss_pred -------hHHHHHHHhcccccCC--CCCceeEEEEcch
Confidence 2333459999999999 7888887776543
No 449
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=55.99 E-value=15 Score=40.78 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=28.5
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchh
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS 547 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtre 547 (1689)
.|.=+++.||+|+|||...+--+...+....-. |.....+.+++|+..--.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~-g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFL-GELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT----------EEEEESSS-
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccC-CcccccCceEEEEeccCC
Confidence 567789999999999988776666555322111 111225578999876554
No 450
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=55.87 E-value=8.9 Score=34.87 Aligned_cols=18 Identities=28% Similarity=0.636 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCChHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~ 514 (1689)
|...++.+|+|||||-..
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999775
No 451
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=55.79 E-value=14 Score=45.73 Aligned_cols=51 Identities=22% Similarity=0.325 Sum_probs=37.2
Q ss_pred cEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 499 NLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
-++|.+..|||||++++--+-.. .. ...+.+++|+++..+|...+...+.+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~--------~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QN--------SEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hc--------cccCCceEEEEecchHHHHHHHHHhh
Confidence 46899999999999987665443 11 11345899999999999877655533
No 452
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=55.70 E-value=13 Score=46.42 Aligned_cols=19 Identities=47% Similarity=0.791 Sum_probs=16.9
Q ss_pred CcEEEEccCCCChHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lL 516 (1689)
+++|+.+|||+|||..+-.
T Consensus 48 ~~ILLiGppG~GKT~lAra 66 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARR 66 (441)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 7999999999999988743
No 453
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=55.64 E-value=30 Score=42.40 Aligned_cols=115 Identities=10% Similarity=0.086 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHH---hcC---CcEEEEccCCCChHHHHHHHHHHHHhhcccCC---CCC-------CCCCeEEEEEccc
Q psy14582 482 LNRIQSRLCKSAL---ESD---ENLLLCAPTGAGKTNVALLCMLQEIGKHINAD---GTI-------NADEFKIIYVAPM 545 (1689)
Q Consensus 482 ~tpiQ~~aip~al---~~g---~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~---g~~-------~~~~~kvl~laPt 545 (1689)
++|||...+..+. .+| +-+|+++|.|.||+..+..-+-..+-...... |.. ....+-..++.|.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE 82 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc
Confidence 4567777666543 233 46899999999999887665533333221111 100 1234567777786
Q ss_pred hh---hhHhhhhcccccch---------hhccCCCchHHHHHHHHHHHHHhhcccCceEEEEe
Q psy14582 546 RS---LVQEMVGNFGKDEI---------HLLHDERGPVLEALIARTIRNIEATQEDVRLVGLS 596 (1689)
Q Consensus 546 re---La~Qi~~~f~kde~---------hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~S 596 (1689)
.. .--++++.+.+... =++.++++.|-+.--..+++.++-.+...-+++.|
T Consensus 83 ~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t 145 (334)
T PRK07993 83 KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLAC 145 (334)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 42 22222222222110 04556666666666666666666655555555554
No 454
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=55.62 E-value=63 Score=40.80 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=18.4
Q ss_pred hcCCcEEEEccCCCChHHHHHHH
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLp 517 (1689)
..|+-+.+.+|||+|||-....-
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakL 211 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKL 211 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 35777899999999999876543
No 455
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=55.59 E-value=13 Score=43.80 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=28.4
Q ss_pred hcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
..|..+++.||||+|||....--+.+.+.. .+.+++|++-
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~----------~g~~vl~iS~ 67 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQ----------HGVRVGTISL 67 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHh----------cCceEEEEEc
Confidence 478899999999999997766555444332 1457888753
No 456
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=55.52 E-value=50 Score=47.19 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=79.1
Q ss_pred HHHHHHhcCCcEEEEccCCCChHHHHHHHHHHH-Hhhc-------------------------ccC--C---C------C
Q psy14582 489 LCKSALESDENLLLCAPTGAGKTNVALLCMLQE-IGKH-------------------------INA--D---G------T 531 (1689)
Q Consensus 489 aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~-l~~~-------------------------~~~--~---g------~ 531 (1689)
.+..++.++..+|++|+||||||. .+|.+-. .... ... + | .
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~ 151 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHD 151 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCc
Confidence 334456567788999999999998 4553321 1100 000 0 1 0
Q ss_pred CCCCCeEEEEEccchhhhHhhhhcccccchhhccCCCc-hHHHHHHHH-HHHHHhhcccCceEEEEeecCCCHHHHHHHH
Q psy14582 532 INADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERG-PVLEALIAR-TIRNIEATQEDVRLVGLSATLPNYKDVATLL 609 (1689)
Q Consensus 532 ~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll~de~g-~~le~~~~~-~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l 609 (1689)
......+++|+.|-+-|..=+.+.+-.+.-|+|.||+. ++++..+.- .+..+....+..|++++|||+. ...+.+++
T Consensus 152 ~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld-~~~fa~~F 230 (1283)
T TIGR01967 152 QVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATID-PERFSRHF 230 (1283)
T ss_pred ccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcC-HHHHHHHh
Confidence 11234678888887766443333344455668888887 576665543 2333333346789999999996 34666665
Q ss_pred hhCCCCCceeecCCCccccceeEEEEe
Q psy14582 610 RIKPETGLFYFDNSFRPVALEQQYIGV 636 (1689)
Q Consensus 610 ~~~~~~~~~~~~~~~r~~~l~~~~~~~ 636 (1689)
.. ..++....+..+++..|...
T Consensus 231 ~~-----apvI~V~Gr~~PVev~Y~~~ 252 (1283)
T TIGR01967 231 NN-----APIIEVSGRTYPVEVRYRPL 252 (1283)
T ss_pred cC-----CCEEEECCCcccceeEEecc
Confidence 32 22333344544555555443
No 457
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=55.51 E-value=49 Score=32.19 Aligned_cols=83 Identities=13% Similarity=0.263 Sum_probs=44.3
Q ss_pred CcEEEEEEEeccccccCCCeEEEEEEEEecCCCCCccccCCCCCCCcccEEEEEEeCCCCeEEEEEee---ccCcceEEE
Q psy14582 1563 PNIELSYEVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRL---TLQQKAKIK 1639 (1689)
Q Consensus 1563 P~iei~~~v~~~~~i~~g~~~~l~v~l~R~~~~~~~v~aP~fP~~K~e~Wwvvvgd~~~~~l~~ikrv---~~~~~~~~~ 1639 (1689)
|++.| ........+.+|+.+++++++.=.+... ++ ++.+-+-. ++...+-..+ ...+..++.
T Consensus 2 pDL~v-~~~~~~~~~~~g~~~~i~~~V~N~G~~~----~~--------~~~v~~~~--~~~~~~~~~i~~L~~g~~~~v~ 66 (101)
T PF07705_consen 2 PDLTV-SITVSPSNVVPGEPVTITVTVKNNGTAD----AE--------NVTVRLYL--DGNSVSTVTIPSLAPGESETVT 66 (101)
T ss_dssp --EEE--EEEC-SEEETTSEEEEEEEEEE-SSS-----BE--------EEEEEEEE--TTEEEEEEEESEB-TTEEEEEE
T ss_pred CCEEE-EEeeCCCcccCCCEEEEEEEEEECCCCC----CC--------CEEEEEEE--CCceeccEEECCcCCCcEEEEE
Confidence 66777 2334567799999999999997543221 11 11111111 2333343333 345566777
Q ss_pred EEeeCCCCceEEEEEEEEcCC
Q psy14582 1640 LDFVAPNPGHHSYALYFMSDA 1660 (1689)
Q Consensus 1640 l~f~~p~~G~~~~~l~~~sDs 1660 (1689)
+.+.+|.+|.|.+.+.+=.+.
T Consensus 67 ~~~~~~~~G~~~i~~~iD~~n 87 (101)
T PF07705_consen 67 FTWTPPSPGSYTIRVVIDPDN 87 (101)
T ss_dssp EEEE-SS-CEEEEEEEESTTT
T ss_pred EEEEeCCCCeEEEEEEEeeCC
Confidence 777888999998777664443
No 458
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=55.44 E-value=27 Score=41.08 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred ceeEeecCCCchHHHHHHHHHHHhhhccccCCCc---CCCCcEEEEEccchhHHHHHhh-----ccccCCceeecC-Cch
Q psy14582 755 PVSFRLPRGAGKTNVALLCMLQEIGKHINADGTI---NADEFKIIYVAPMRSLVQEMVG-----NFGKDEIHLLHD-ERG 825 (1689)
Q Consensus 755 pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i---~~~~~kvVylaP~r~L~~q~v~-----liIiDEiHll~d-~rG 825 (1689)
++.|.-|+|+|||..+-.-.-..........+.. .......-++.-+...+.+.++ +++|||+|.+.. ...
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~ 123 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEK 123 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCcc
Q ss_pred hHHHHHHHHHHHHHHhccccceEEEEecC
Q psy14582 826 PVLEALIARTIRNIEATQEDVRLVGLSAT 854 (1689)
Q Consensus 826 ~~lE~iv~r~~~~~~~~~~~~riV~lSAT 854 (1689)
..-...+.-++..++....++.+++.+.+
T Consensus 124 ~~~~~~i~~Ll~~~e~~~~~~~vila~~~ 152 (261)
T TIGR02881 124 DFGKEAIDTLVKGMEDNRNEFVLILAGYS 152 (261)
T ss_pred chHHHHHHHHHHHHhccCCCEEEEecCCc
No 459
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=54.89 E-value=11 Score=50.61 Aligned_cols=44 Identities=16% Similarity=0.340 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCC
Q psy14582 1325 RLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFR 1368 (1689)
Q Consensus 1325 rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~~ 1368 (1689)
.+.|-++=-++-..|.......-.|-..|.-|-..-..||..+.
T Consensus 722 ~~eR~i~L~~ID~~W~eHL~~md~LRegI~LR~ygQkDPl~EYk 765 (796)
T PRK12906 722 EFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYGQLNPLVEYQ 765 (796)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCHHHHHH
Confidence 33444444455577888888888888888877777777776554
No 460
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=54.88 E-value=15 Score=51.07 Aligned_cols=42 Identities=26% Similarity=0.395 Sum_probs=31.5
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchh
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS 547 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtre 547 (1689)
...|++|+||||||||.....-+.+.+.. .+.+++++=|-++
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~~li~q~~~~----------~~~~v~IiD~g~s 515 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLTNLLMQVMAV----------HRPRLFIVEAGNS 515 (893)
T ss_pred CcccEEEECCCCCCHHHHHHHHHHHHHHh----------cCCEEEEEcCCCC
Confidence 46899999999999998877666665542 1347888877665
No 461
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=54.75 E-value=11 Score=41.89 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=40.1
Q ss_pred CCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHH-----
Q psy14582 733 PLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE----- 807 (1689)
Q Consensus 733 plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q----- 807 (1689)
..+......+.+..|+. ....+.+.-|+|+|||..+..-.-..+. .+.+++|+ +..+|..+
T Consensus 29 ~~~~~~~~~l~~~~~~~--~~~~l~l~G~~G~GKThLa~ai~~~~~~-----------~g~~v~f~-~~~~L~~~l~~~~ 94 (178)
T PF01695_consen 29 GIDKAQIAQLAALEFIE--NGENLILYGPPGTGKTHLAVAIANEAIR-----------KGYSVLFI-TASDLLDELKQSR 94 (178)
T ss_dssp -----HHHHHHHH-S-S--C--EEEEEESTTSSHHHHHHHHHHHHHH-----------TT--EEEE-EHHHHHHHHHCCH
T ss_pred hHHHHHHHHHhcCCCcc--cCeEEEEEhhHhHHHHHHHHHHHHHhcc-----------CCcceeEe-ecCceeccccccc
Confidence 34445555556677875 3456888899999999886533222222 14455554 44555554
Q ss_pred -------------HhhccccCCceee
Q psy14582 808 -------------MVGNFGKDEIHLL 820 (1689)
Q Consensus 808 -------------~v~liIiDEiHll 820 (1689)
.++++|+||+-..
T Consensus 95 ~~~~~~~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 95 SDGSYEELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp CCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred cccchhhhcCccccccEeccccccee
Confidence 2899999997543
No 462
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=54.71 E-value=16 Score=43.56 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=18.5
Q ss_pred cCCcEEEEccCCCChHHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpi 518 (1689)
.++.+++++|||+|||-...--+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 56788999999999997765444
No 463
>PF13871 Helicase_C_4: Helicase_C-like
Probab=54.66 E-value=24 Score=41.87 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=16.6
Q ss_pred ecCHHHHHHHhcccCCCCC
Q psy14582 1078 ELGALDVLQMLGRAGRPQY 1096 (1689)
Q Consensus 1078 ~~s~~d~lQm~GRAGR~g~ 1096 (1689)
+.|+...+|.+||+-|.+-
T Consensus 97 pwsad~aiQ~~GR~hRsnQ 115 (278)
T PF13871_consen 97 PWSADKAIQQFGRTHRSNQ 115 (278)
T ss_pred CCCHHHHHHHhcccccccc
Confidence 4679999999999999873
No 464
>CHL00181 cbbX CbbX; Provisional
Probab=54.51 E-value=63 Score=38.78 Aligned_cols=105 Identities=21% Similarity=0.189 Sum_probs=0.0
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhh----------------ccccCC
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG----------------NFGKDE 816 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~----------------liIiDE 816 (1689)
..++.|.-|+|+|||..+..-.-..........+ -++.+....|+.+.++ +++|||
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~--------~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE 130 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKG--------HLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDE 130 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCC--------ceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEc
Q ss_pred ceee--cCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCC
Q psy14582 817 IHLL--HDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKP 869 (1689)
Q Consensus 817 iHll--~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~ 869 (1689)
+|.+ .+.....-..++..+...++....++++|+.+.+ ..+..++..+|
T Consensus 131 ~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~----~~~~~~~~~np 181 (287)
T CHL00181 131 AYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYK----DRMDKFYESNP 181 (287)
T ss_pred cchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCc----HHHHHHHhcCH
No 465
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=54.49 E-value=16 Score=41.58 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.2
Q ss_pred cCCcEEEEccCCCChHHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpi 518 (1689)
.+.++++++|+|+|||..+..-.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 56789999999999998876544
No 466
>KOG0060|consensus
Probab=54.22 E-value=7 Score=49.80 Aligned_cols=18 Identities=50% Similarity=0.922 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCChHHH
Q psy14582 496 SDENLLLCAPTGAGKTNV 513 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a 513 (1689)
+|.|+|+|+|||+|||--
T Consensus 460 ~g~~LLItG~sG~GKtSL 477 (659)
T KOG0060|consen 460 SGQNLLITGPSGCGKTSL 477 (659)
T ss_pred CCCeEEEECCCCCchhHH
Confidence 799999999999999964
No 467
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=54.04 E-value=18 Score=44.57 Aligned_cols=14 Identities=21% Similarity=0.067 Sum_probs=12.4
Q ss_pred hhccccCCceeecC
Q psy14582 809 VGNFGKDEIHLLHD 822 (1689)
Q Consensus 809 v~liIiDEiHll~d 822 (1689)
.++||+||+|.+..
T Consensus 84 ~DviivDEAqrl~~ 97 (352)
T PF09848_consen 84 YDVIIVDEAQRLRT 97 (352)
T ss_pred CCEEEEehhHhhhh
Confidence 58999999999876
No 468
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=53.59 E-value=18 Score=51.88 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=46.3
Q ss_pred HhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccccc
Q psy14582 494 LESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDE 560 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~kde 560 (1689)
.+-.++++|.|+-|||||.+-.--++..+.... ..-++++|+-|+.=|.+|.+++...+
T Consensus 7 ~dp~~~~~~~a~agsgkt~~l~~~~~~~~~~~~--------~~~~i~~~t~t~~aa~em~~Ri~~~L 65 (1141)
T TIGR02784 7 SDPKTSAWVSANAGSGKTHVLTQRVIRLLLNGV--------PPSKILCLTYTKAAAAEMQNRVFDRL 65 (1141)
T ss_pred cCCCCCEEEEEECCCCHHHHHHHHHHHHHHcCC--------CCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 445689999999999999998888887775321 22489999999999999877665533
No 469
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=53.56 E-value=96 Score=36.89 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=20.0
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQ 520 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~ 520 (1689)
.+..+.+++|+|+|||..+..-+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 4578899999999999987765433
No 470
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=53.50 E-value=18 Score=41.53 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=27.9
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccch
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR 546 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtr 546 (1689)
.|..+++.+++|+|||..++--+...+. .+.+++|++-..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~-----------~g~~~~y~s~e~ 54 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK-----------NGEKAMYISLEE 54 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-----------CCCeEEEEECCC
Confidence 5778899999999998866555544443 234788876543
No 471
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=53.46 E-value=94 Score=37.88 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCChHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLp 517 (1689)
.++-+++++|+|+|||-.+.--
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kL 134 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKL 134 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHH
Confidence 3566789999999999775443
No 472
>KOG0949|consensus
Probab=53.32 E-value=13 Score=49.96 Aligned_cols=94 Identities=29% Similarity=0.402 Sum_probs=75.6
Q ss_pred ceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH--------------------------
Q psy14582 755 PVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM-------------------------- 808 (1689)
Q Consensus 755 pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~-------------------------- 808 (1689)
...+.|||++|||++...++=..+.. ....-+||++|+++|+.|.
T Consensus 528 SavIVAPTSaGKTfisfY~iEKVLRe---------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqE 598 (1330)
T KOG0949|consen 528 SAVIVAPTSAGKTFISFYAIEKVLRE---------SDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQE 598 (1330)
T ss_pred ceEEEeeccCCceeccHHHHHHHHhh---------cCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHH
Confidence 36778999999999887766444432 2345789999999999992
Q ss_pred ----------------------------------hhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEec
Q psy14582 809 ----------------------------------VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSA 853 (1689)
Q Consensus 809 ----------------------------------v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSA 853 (1689)
++.+|+||+|+++. +-|-.+|.++- -....++++||
T Consensus 599 Ysinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~---------li~CP~L~LSA 669 (1330)
T KOG0949|consen 599 YSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL---------LIPCPFLVLSA 669 (1330)
T ss_pred hcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH---------hcCCCeeEEec
Confidence 78899999999998 67777776643 23678999999
Q ss_pred CCCCHHHHHHHhh
Q psy14582 854 TLPNYKDVATLLR 866 (1689)
Q Consensus 854 Tl~n~~dva~~L~ 866 (1689)
|+.|+..+..|+.
T Consensus 670 TigN~~l~qkWln 682 (1330)
T KOG0949|consen 670 TIGNPNLFQKWLN 682 (1330)
T ss_pred ccCCHHHHHHHHH
Confidence 9999999999998
No 473
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=53.03 E-value=32 Score=37.51 Aligned_cols=102 Identities=18% Similarity=0.283 Sum_probs=59.3
Q ss_pred CcEEEEccCCCChHHHHHHHHHHHHhhcccCC--C-------CCCCCCeEEEEEccchh---hhHhhhhcccccc-----
Q psy14582 498 ENLLLCAPTGAGKTNVALLCMLQEIGKHINAD--G-------TINADEFKIIYVAPMRS---LVQEMVGNFGKDE----- 560 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~--g-------~~~~~~~kvl~laPtre---La~Qi~~~f~kde----- 560 (1689)
+.+|+++|.|+||+..+..-+-..+....... + ......+-..++.|... ...+++..+....
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~ 99 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPS 99 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-T
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHHh
Confidence 45799999999999888766644443322110 0 00012344666677654 3333333332211
Q ss_pred ---hh-hccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecC
Q psy14582 561 ---IH-LLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATL 599 (1689)
Q Consensus 561 ---~h-ll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~ 599 (1689)
.. ++.++++.|-..-...+++.++..+....+++.+-..
T Consensus 100 ~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 100 EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 11 5667888887777777888888888888888876443
No 474
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=52.73 E-value=50 Score=45.42 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=51.6
Q ss_pred ccceeccCCHHHHHHHHHHHHHHHHHhCCC------------chHHHhhHHHHHHHHhcCCccChHHHHHHHHHHhc---
Q psy14582 98 VGIIYRPKTQETRQTYEVLLSFIQEALGDQ------------PRDILCGAADEVLTVLKNDRMKEKEKKKETENLLG--- 162 (1689)
Q Consensus 98 ~~~~Y~P~t~etr~~Ye~iL~~v~~~LGdq------------p~dvi~sAad~vl~~Lk~d~~~~~~kkkeie~llg--- 162 (1689)
.++..+-...+.-...+++....+.++|+. -++.+.--+|.+|..|-.... =-|+-++.+|+
T Consensus 541 ~~lq~~~~~~~~~~~l~dl~~c~~~~~~~~~~~~~~~~~~~~e~~~~~vlveiLLslls~~s~---llR~~~~~vf~~~~ 617 (784)
T PF04931_consen 541 VLLQLYNGPEEAVDVLDDLQICYEKAFGKKKKKKKSKEDDEEEPEWSEVLVEILLSLLSQPSA---LLRKVSEQVFEAFC 617 (784)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHhcccchhhccccccccCccHHHHHHHHHHHHHhCcch---HHHHHHHHHHHHHH
Confidence 345556666777888999888888888743 124566677888888875542 34566777776
Q ss_pred -CCcHHHHHHHHHHH
Q psy14582 163 -SLAEERFALLVNLG 176 (1689)
Q Consensus 163 -~i~~~~f~~L~~L~ 176 (1689)
.++.+.++.|+..-
T Consensus 618 ~~~t~~~l~~ll~vl 632 (784)
T PF04931_consen 618 PHLTESGLQLLLDVL 632 (784)
T ss_pred hhcCHHHHHHHHHHh
Confidence 46777777666544
No 475
>PLN03025 replication factor C subunit; Provisional
Probab=52.48 E-value=49 Score=40.25 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=17.6
Q ss_pred CcEEEEccCCCChHHHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLpi 518 (1689)
.++|+++|.|+|||..+..-+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la 55 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALA 55 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 579999999999998776544
No 476
>PRK06893 DNA replication initiation factor; Validated
Probab=52.22 E-value=31 Score=39.79 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=43.8
Q ss_pred eeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccch------hHHHH--HhhccccCCceeecCCchhH
Q psy14582 756 VSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR------SLVQE--MVGNFGKDEIHLLHDERGPV 827 (1689)
Q Consensus 756 v~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r------~L~~q--~v~liIiDEiHll~d~rG~~ 827 (1689)
+.+.-|+|+|||...... .+.... .+.+++|+.-.. ++... ..+++++||+|.+.....
T Consensus 42 l~l~G~~G~GKThL~~ai-~~~~~~----------~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~-- 108 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAV-SNHYLL----------NQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEE-- 108 (229)
T ss_pred EEEECCCCCCHHHHHHHH-HHHHHH----------cCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChH--
Confidence 466789999999754322 122211 134566665432 11111 368999999998864322
Q ss_pred HHHHHHHHHHHHHhccccceEEEEecCCC
Q psy14582 828 LEALIARTIRNIEATQEDVRLVGLSATLP 856 (1689)
Q Consensus 828 lE~iv~r~~~~~~~~~~~~riV~lSATl~ 856 (1689)
++..+-.+.... ...+.+++.+|++.+
T Consensus 109 ~~~~l~~l~n~~--~~~~~~illits~~~ 135 (229)
T PRK06893 109 WELAIFDLFNRI--KEQGKTLLLISADCS 135 (229)
T ss_pred HHHHHHHHHHHH--HHcCCcEEEEeCCCC
Confidence 111111111111 122445677777764
No 477
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=52.14 E-value=22 Score=42.50 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEc
Q psy14582 483 NRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVA 543 (1689)
Q Consensus 483 tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~la 543 (1689)
...|-+.|+..+.+|.-+|+.++.|.|||.+.+.-.+......... |.-.++..+++||.
T Consensus 75 rs~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lf-G~~v~epGkvlyvs 134 (402)
T COG3598 75 RSNSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLF-GNKVKEPGKVLYVS 134 (402)
T ss_pred cccChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHh-cccccCCCeEEEEE
Confidence 4467788888888889999999999999999876555443322111 21223445788874
No 478
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=52.03 E-value=18 Score=42.69 Aligned_cols=38 Identities=8% Similarity=0.133 Sum_probs=27.6
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|.-+++++|+|+|||..++--+.+.+. .+.+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~-----------~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS-----------RGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh-----------CCCcEEEEEe
Confidence 5777899999999999877655544332 2347888874
No 479
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.72 E-value=11 Score=44.95 Aligned_cols=18 Identities=50% Similarity=0.903 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCChHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~ 514 (1689)
.+|+|..+|||-|||.++
T Consensus 50 PKNILMIGpTGVGKTEIA 67 (444)
T COG1220 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_pred ccceEEECCCCCcHHHHH
Confidence 579999999999999987
No 480
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=51.41 E-value=9.3 Score=46.13 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=16.3
Q ss_pred CcEEEEccCCCChHHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLp 517 (1689)
.-+++++|||||||..+.--
T Consensus 5 ~~i~i~GptgsGKt~la~~l 24 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIEL 24 (307)
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 34789999999999988643
No 481
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=51.33 E-value=19 Score=47.62 Aligned_cols=39 Identities=28% Similarity=0.305 Sum_probs=30.8
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccch
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR 546 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtr 546 (1689)
..+++|.++||||||....+.+.+.+.. +..++++=|-.
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~-----------g~~vi~fDpkg 218 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR-----------GDVVIVFDPKG 218 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCCC
Confidence 5789999999999999988877776652 23677777766
No 482
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=51.32 E-value=77 Score=38.15 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=20.2
Q ss_pred CCc-EEEEccCCCChHHHHHHHHHHHHh
Q psy14582 497 DEN-LLLCAPTGAGKTNVALLCMLQEIG 523 (1689)
Q Consensus 497 g~n-vLv~APTGSGKT~a~lLpiL~~l~ 523 (1689)
... +|+++|.|+|||.++.... +.+.
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA-~~l~ 49 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALA-KELL 49 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHH-HHHh
Confidence 455 9999999999999986665 4443
No 483
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=51.30 E-value=9.7 Score=38.87 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.0
Q ss_pred EEEEccCCCChHHHHHHH
Q psy14582 500 LLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 500 vLv~APTGSGKT~a~lLp 517 (1689)
+++++++|||||-++-.-
T Consensus 1 I~i~G~~GsGKtTia~~L 18 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKEL 18 (129)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHH
Confidence 579999999999887544
No 484
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=50.96 E-value=12 Score=41.71 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCChHHHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLCML 519 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL 519 (1689)
...+|+++|.|||||.-|..-.-
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~ 25 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVN 25 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhc
Confidence 46789999999999998866553
No 485
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=50.91 E-value=9.7 Score=45.70 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=15.2
Q ss_pred cEEEEccCCCChHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lL 516 (1689)
=+++++||+||||..++-
T Consensus 5 ~i~I~GPTAsGKT~lai~ 22 (308)
T COG0324 5 LIVIAGPTASGKTALAIA 22 (308)
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 368999999999987753
No 486
>PRK09354 recA recombinase A; Provisional
Probab=50.76 E-value=51 Score=40.54 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=39.0
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccccc
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKD 559 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~kd 559 (1689)
.|+-+.+++|+|||||..++-.+.+... .+.+++|+..-.++-.+....+.-+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~-----------~G~~~~yId~E~s~~~~~a~~lGvd 111 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQK-----------AGGTAAFIDAEHALDPVYAKKLGVD 111 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-----------cCCcEEEECCccchHHHHHHHcCCC
Confidence 5778899999999999988777665443 2348999988777776655544443
No 487
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=50.46 E-value=10 Score=38.57 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=15.0
Q ss_pred EEEEccCCCChHHHHHHH
Q psy14582 500 LLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 500 vLv~APTGSGKT~a~lLp 517 (1689)
+++++|+|||||..+-..
T Consensus 2 I~I~G~~gsGKST~a~~L 19 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKEL 19 (121)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999877443
No 488
>PRK04328 hypothetical protein; Provisional
Probab=50.32 E-value=20 Score=41.97 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=27.0
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEc
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVA 543 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~la 543 (1689)
.|..+++.+|+|||||.-++--+.+.+. .+-+++|++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~-----------~ge~~lyis 58 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ-----------MGEPGVYVA 58 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh-----------cCCcEEEEE
Confidence 5788999999999999876555545443 234688876
No 489
>PLN02165 adenylate isopentenyltransferase
Probab=50.27 E-value=11 Score=45.87 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.|..+++.+|||||||..+..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 467789999999999998865
No 490
>PRK08084 DNA replication initiation factor; Provisional
Probab=50.05 E-value=22 Score=41.17 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=17.2
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.+.++++++|+|+|||-.+..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346899999999999976654
No 491
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=49.94 E-value=19 Score=49.51 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=30.1
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhh
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL 548 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreL 548 (1689)
.+.|++|+|+||||||...-.-+.+.+. .+.+++++=|..+-
T Consensus 429 ~n~n~~I~G~tGsGKS~~~~~l~~~~~~-----------~g~~v~iiD~~~sy 470 (797)
T TIGR02746 429 TNYNIAVVGGSGAGKSFFMQELIVDNLS-----------RGGKVWVIDVGRSY 470 (797)
T ss_pred CccceEEEcCCCCCHHHHHHHHHHHHHh-----------CCCEEEEEeCCCCH
Confidence 4579999999999999987765544332 23478888776543
No 492
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=49.84 E-value=10 Score=39.82 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=16.5
Q ss_pred cEEEEccCCCChHHHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lLpi 518 (1689)
+||+.+|+|+|||..+..-.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la 20 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELA 20 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 58999999999998875443
No 493
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=49.73 E-value=37 Score=49.91 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHhc-CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 480 KTLNRIQSRLCKSALES-DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~-g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
..+++.|..|+..++.+ ++-+++.+.-|+|||...- .++..+.... ...+.+++.+|||---|.++.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~------~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLP------ESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhh------cccCceEEEECCcHHHHHHHH
Confidence 36899999999999854 4567999999999997632 2222222110 013467999999988887764
No 494
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=49.55 E-value=98 Score=39.25 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=29.8
Q ss_pred hccCCCchHH--HHHHHHHHHHHhhcccCceEEEEeecCCCHH--HHHHHHhhCCCCCcee
Q psy14582 563 LLHDERGPVL--EALIARTIRNIEATQEDVRLVGLSATLPNYK--DVATLLRIKPETGLFY 619 (1689)
Q Consensus 563 ll~de~g~~l--e~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~--~v~~~l~~~~~~~~~~ 619 (1689)
++.|-+|+.- +..+..+........+....+.++|+.+... ....|-...+.+++.+
T Consensus 186 ViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~Il 246 (429)
T TIGR01425 186 IIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVII 246 (429)
T ss_pred EEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEE
Confidence 5557666542 2344444444444555566777999887544 3444433333344333
No 495
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=49.51 E-value=22 Score=40.81 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=18.4
Q ss_pred cCCcEEEEccCCCChHHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpi 518 (1689)
.++.+++++|+|+|||..+..-.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~ 63 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALV 63 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45789999999999997765443
No 496
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=49.45 E-value=21 Score=40.65 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=27.4
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEc
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVA 543 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~la 543 (1689)
.|.-+++++|.|||||..++--+.+... .+.+++|+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~-----------~g~~v~yi~ 54 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAG-----------QGKKVAYID 54 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-----------cCCeEEEEE
Confidence 4666899999999999988776655432 234788884
No 497
>PRK08727 hypothetical protein; Validated
Probab=49.25 E-value=22 Score=41.22 Aligned_cols=19 Identities=47% Similarity=0.765 Sum_probs=15.4
Q ss_pred CcEEEEccCCCChHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lL 516 (1689)
..+++++|+|+|||-....
T Consensus 42 ~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3589999999999966543
No 498
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=49.21 E-value=59 Score=38.94 Aligned_cols=19 Identities=53% Similarity=0.641 Sum_probs=15.4
Q ss_pred ccceeEeecCCCchHHHHH
Q psy14582 753 ILPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~l 771 (1689)
..++.|.-|+|+|||..+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4568888899999998763
No 499
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.19 E-value=40 Score=37.92 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=48.0
Q ss_pred HHHhCCCchHHHhhHHHHHHHHhcCC----ccChHHHHHHHHHHhcCCcHHHHHHHHHHHhhhcc
Q psy14582 121 QEALGDQPRDILCGAADEVLTVLKND----RMKEKEKKKETENLLGSLAEERFALLVNLGKKITD 181 (1689)
Q Consensus 121 ~~~LGdqp~dvi~sAad~vl~~Lk~d----~~~~~~kkkeie~llg~i~~~~f~~L~~L~k~ItD 181 (1689)
...-.++|++.+..+||.+|.+||++ +.....++.-+++.|.|+-|-...-..-|||-+..
T Consensus 22 ~~~~~~~~~~~v~~~a~~~ls~lk~~~~~~k~dp~~l~~~v~~~l~p~vd~~~~a~~vLGk~~k~ 86 (202)
T COG2854 22 AAAAPANPYSLVQEAADKVLSILKNNQAKIKQDPQYLRQIVDQELLPYVDFKYAAKLVLGKYYKT 86 (202)
T ss_pred HhhCccchHHHHHHHHHHHHHHHhccchhhccCHHHHHHHHHHHhhhhhcHHHHHHHHhcccccc
Confidence 34446789999999999999999999 56667777889999998777766666667755444
No 500
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=49.19 E-value=82 Score=40.11 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=17.8
Q ss_pred CCcEEEEccCCCChHHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpi 518 (1689)
...+++++++|+|||.++.--+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4578999999999998876544
Done!