Query psy14582
Match_columns 1689
No_of_seqs 824 out of 4907
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 23:35:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 100.0 1E-171 4E-176 1789.5 88.7 1035 405-1673 3-1724(1724)
2 4f92_B U5 small nuclear ribonu 100.0 3E-117 1E-121 1240.5 81.4 744 670-1466 797-1673(1724)
3 2p6r_A Afuhel308 helicase; pro 100.0 6E-78 2.1E-82 796.0 40.1 649 468-1424 10-692 (702)
4 2va8_A SSO2462, SKI2-type heli 100.0 2.6E-77 8.8E-82 792.2 39.2 657 467-1419 14-714 (715)
5 2zj8_A DNA helicase, putative 100.0 4E-76 1.4E-80 780.8 48.7 652 467-1413 7-695 (720)
6 2q0z_X Protein Pro2281; SEC63, 100.0 4.6E-64 1.6E-68 603.6 39.8 326 1211-1681 10-336 (339)
7 3im1_A Protein SNU246, PRE-mRN 100.0 2.2E-63 7.5E-68 595.5 40.7 320 1210-1675 5-328 (328)
8 2xgj_A ATP-dependent RNA helic 100.0 5.9E-38 2E-42 423.6 30.7 274 809-1133 193-525 (1010)
9 3i5x_A ATP-dependent RNA helic 100.0 4.5E-37 1.5E-41 396.2 37.0 394 447-1119 58-459 (563)
10 3l9o_A ATP-dependent RNA helic 100.0 5.3E-38 1.8E-42 427.5 28.2 281 809-1136 291-626 (1108)
11 2db3_A ATP-dependent RNA helic 100.0 3.1E-37 1.1E-41 384.9 30.5 350 453-1109 52-407 (434)
12 3sqw_A ATP-dependent RNA helic 100.0 8.9E-36 3E-40 385.2 36.3 395 445-1119 5-408 (579)
13 2i4i_A ATP-dependent RNA helic 100.0 1E-35 3.4E-40 368.4 29.3 365 454-1117 12-391 (417)
14 4a4z_A Antiviral helicase SKI2 100.0 2.7E-35 9.2E-40 397.8 34.0 272 809-1130 148-516 (997)
15 3fht_A ATP-dependent RNA helic 100.0 7.4E-34 2.5E-38 350.6 32.9 214 809-1116 169-386 (412)
16 2j0s_A ATP-dependent RNA helic 100.0 1.2E-34 4.1E-39 358.3 25.1 343 467-1116 43-390 (410)
17 3pey_A ATP-dependent RNA helic 100.0 1.7E-33 5.7E-38 345.0 34.3 220 809-1119 146-366 (395)
18 1s2m_A Putative ATP-dependent 100.0 1E-33 3.6E-38 348.5 29.2 345 467-1119 27-375 (400)
19 1xti_A Probable ATP-dependent 100.0 4.2E-33 1.4E-37 341.7 33.7 349 467-1119 14-367 (391)
20 3fmp_B ATP-dependent RNA helic 100.0 2.5E-35 8.5E-40 372.4 14.2 219 809-1119 236-456 (479)
21 3eiq_A Eukaryotic initiation f 100.0 9.1E-34 3.1E-38 350.3 24.7 344 467-1117 46-395 (414)
22 2v1x_A ATP-dependent DNA helic 100.0 3.3E-33 1.1E-37 359.4 30.5 214 809-1119 166-384 (591)
23 2xau_A PRE-mRNA-splicing facto 100.0 2.2E-32 7.7E-37 361.0 37.1 344 809-1269 209-561 (773)
24 1oyw_A RECQ helicase, ATP-depe 100.0 1.4E-32 4.8E-37 349.9 29.0 210 809-1120 140-354 (523)
25 1hv8_A Putative ATP-dependent 100.0 3.2E-32 1.1E-36 330.2 28.9 335 467-1117 12-353 (367)
26 1fuu_A Yeast initiation factor 100.0 1.7E-33 6E-38 345.2 10.5 342 467-1116 27-373 (394)
27 2z0m_A 337AA long hypothetical 100.0 1E-31 3.4E-36 322.1 25.2 197 809-1116 130-329 (337)
28 3fho_A ATP-dependent RNA helic 100.0 1.8E-33 6.2E-38 357.7 8.8 210 809-1109 260-470 (508)
29 3oiy_A Reverse gyrase helicase 100.0 7.9E-31 2.7E-35 324.9 26.1 77 468-558 10-86 (414)
30 4a2p_A RIG-I, retinoic acid in 100.0 1E-28 3.5E-33 317.1 23.1 122 916-1111 388-510 (556)
31 3tbk_A RIG-I helicase domain; 100.0 1.5E-28 5.1E-33 315.1 22.2 122 917-1112 388-510 (555)
32 2ykg_A Probable ATP-dependent 100.0 3.8E-28 1.3E-32 320.8 22.6 121 917-1111 397-518 (696)
33 4ddu_A Reverse gyrase; topoiso 100.0 2E-27 6.8E-32 323.7 28.8 68 478-558 76-143 (1104)
34 3rc3_A ATP-dependent RNA helic 100.0 2.8E-28 9.5E-33 315.4 17.6 215 809-1126 240-462 (677)
35 4a2q_A RIG-I, retinoic acid in 100.0 1.4E-27 4.8E-32 319.4 24.7 122 916-1111 629-751 (797)
36 4gl2_A Interferon-induced heli 99.9 9.9E-28 3.4E-32 317.0 20.1 73 480-558 6-79 (699)
37 1gm5_A RECG; helicase, replica 99.9 7.8E-28 2.7E-32 315.6 18.9 202 809-1108 491-696 (780)
38 2eyq_A TRCF, transcription-rep 99.9 2.7E-26 9.4E-31 314.5 31.7 196 809-1109 726-922 (1151)
39 1gku_B Reverse gyrase, TOP-RG; 99.9 6.6E-28 2.2E-32 328.7 12.9 162 809-1027 176-346 (1054)
40 4a2w_A RIG-I, retinoic acid in 99.9 1E-26 3.5E-31 314.6 20.6 121 917-1111 630-751 (936)
41 2whx_A Serine protease/ntpase/ 99.9 5.5E-28 1.9E-32 311.8 7.1 196 809-1107 278-476 (618)
42 1wp9_A ATP-dependent RNA helic 99.9 1E-25 3.4E-30 282.5 26.2 111 916-1111 359-477 (494)
43 2jlq_A Serine protease subunit 99.9 4.5E-27 1.5E-31 294.3 12.1 68 478-556 1-68 (451)
44 1yks_A Genome polyprotein [con 99.9 7.5E-27 2.6E-31 291.1 9.9 119 918-1106 177-296 (440)
45 2wv9_A Flavivirin protease NS2 99.9 8.5E-27 2.9E-31 302.5 8.3 118 917-1106 409-530 (673)
46 1tf5_A Preprotein translocase 99.9 3.8E-24 1.3E-28 275.0 31.5 167 846-1110 368-546 (844)
47 2oca_A DAR protein, ATP-depend 99.9 4.2E-25 1.4E-29 281.1 20.3 69 479-558 111-179 (510)
48 2z83_A Helicase/nucleoside tri 99.9 2E-25 7E-30 279.8 11.7 120 918-1109 190-313 (459)
49 1nkt_A Preprotein translocase 99.9 1E-23 3.6E-28 270.0 27.2 64 478-556 109-172 (922)
50 2fwr_A DNA repair protein RAD2 99.9 1.3E-24 4.5E-29 273.8 17.0 109 914-1109 345-454 (472)
51 2v6i_A RNA helicase; membrane, 99.9 1.6E-24 5.6E-29 269.4 17.3 118 918-1107 171-289 (431)
52 2fsf_A Preprotein translocase 99.9 2.7E-23 9.3E-28 266.3 28.0 167 846-1110 377-584 (853)
53 3o8b_A HCV NS3 protease/helica 99.9 7.5E-25 2.6E-29 280.0 12.2 118 917-1110 395-515 (666)
54 3h1t_A Type I site-specific re 99.9 5.2E-23 1.8E-27 266.6 27.7 118 916-1108 437-558 (590)
55 3jux_A Protein translocase sub 99.8 8E-19 2.8E-23 220.4 32.9 189 846-1132 410-622 (822)
56 3dmq_A RNA polymerase-associat 99.8 3E-19 1E-23 242.0 25.8 109 914-1105 499-609 (968)
57 3fe2_A Probable ATP-dependent 99.8 7.9E-20 2.7E-24 209.6 14.4 97 452-556 24-122 (242)
58 3iuy_A Probable ATP-dependent 99.8 1.1E-19 3.7E-24 206.3 12.2 87 467-556 26-114 (228)
59 3ly5_A ATP-dependent RNA helic 99.8 5.6E-20 1.9E-24 213.6 9.0 86 468-558 61-148 (262)
60 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 2.8E-18 9.5E-23 230.8 25.8 70 480-558 270-352 (1038)
61 1wrb_A DJVLGB; RNA helicase, D 99.8 3.7E-19 1.3E-23 205.2 14.5 90 467-557 29-121 (253)
62 3fmo_B ATP-dependent RNA helic 99.8 4.4E-19 1.5E-23 210.0 15.4 82 467-556 98-182 (300)
63 1c4o_A DNA nucleotide excision 99.8 7.7E-18 2.6E-22 219.5 25.5 116 917-1112 438-553 (664)
64 1z63_A Helicase of the SNF2/RA 99.8 2.1E-17 7.3E-22 209.6 27.2 113 917-1110 340-454 (500)
65 3dkp_A Probable ATP-dependent 99.8 1.7E-19 5.9E-24 206.9 7.2 98 453-558 21-120 (245)
66 3ber_A Probable ATP-dependent 99.8 3.3E-19 1.1E-23 205.5 9.0 81 467-556 49-131 (249)
67 1vec_A ATP-dependent RNA helic 99.8 1.1E-18 3.8E-23 194.4 12.2 81 467-556 9-91 (206)
68 2oxc_A Probable ATP-dependent 99.8 2.5E-18 8.7E-23 195.5 14.0 82 467-557 30-113 (230)
69 3bor_A Human initiation factor 99.8 8.7E-19 3E-23 200.3 10.1 82 467-557 36-119 (237)
70 1qde_A EIF4A, translation init 99.8 2.9E-18 1E-22 193.7 14.2 91 454-557 11-103 (224)
71 1q0u_A Bstdead; DEAD protein, 99.8 5.7E-19 2E-23 199.1 8.1 82 467-557 10-93 (219)
72 2gxq_A Heat resistant RNA depe 99.8 3.8E-18 1.3E-22 190.2 13.9 85 467-557 7-93 (207)
73 3im1_A Protein SNU246, PRE-mRN 99.7 3.2E-18 1.1E-22 204.7 14.0 124 1343-1466 138-274 (328)
74 2pl3_A Probable ATP-dependent 99.7 2.1E-18 7E-23 196.8 11.7 86 467-557 31-118 (236)
75 2d7d_A Uvrabc system protein B 99.7 9.2E-17 3.1E-21 209.3 27.2 116 917-1112 444-559 (661)
76 1t6n_A Probable ATP-dependent 99.7 2.2E-17 7.6E-22 186.1 14.8 81 467-556 20-102 (220)
77 2q0z_X Protein Pro2281; SEC63, 99.7 1.6E-17 5.3E-22 199.6 13.7 123 1345-1467 144-278 (339)
78 2hjv_A ATP-dependent RNA helic 99.7 1.8E-16 6E-21 170.5 19.7 146 881-1118 6-151 (163)
79 2rb4_A ATP-dependent RNA helic 99.7 1.5E-16 5E-21 173.2 18.0 151 882-1118 5-156 (175)
80 1t5i_A C_terminal domain of A 99.7 1.3E-16 4.4E-21 173.2 15.3 144 884-1119 5-148 (172)
81 3eaq_A Heat resistant RNA depe 99.7 2.4E-16 8.1E-21 177.1 17.7 144 882-1117 3-146 (212)
82 1fuk_A Eukaryotic initiation f 99.7 2.7E-16 9.3E-21 169.4 16.7 142 884-1117 3-145 (165)
83 1z3i_X Similar to RAD54-like; 99.7 4.1E-15 1.4E-19 193.9 29.9 112 917-1110 415-529 (644)
84 3mwy_W Chromo domain-containin 99.7 7.7E-15 2.6E-19 196.0 31.8 112 917-1110 571-685 (800)
85 2jgn_A DBX, DDX3, ATP-dependen 99.7 6.7E-16 2.3E-20 169.6 15.3 145 882-1117 17-161 (185)
86 2ipc_A Preprotein translocase 99.6 2.4E-14 8.3E-19 183.1 30.1 64 478-556 77-140 (997)
87 3i32_A Heat resistant RNA depe 99.6 1.3E-15 4.5E-20 179.4 16.0 141 884-1116 2-142 (300)
88 2p6n_A ATP-dependent RNA helic 99.6 5E-15 1.7E-19 163.5 14.7 133 884-1109 29-161 (191)
89 2yjt_D ATP-dependent RNA helic 99.3 9.2E-16 3.1E-20 166.1 0.0 117 916-1116 28-144 (170)
90 2vl7_A XPD; helicase, unknown 99.5 2.1E-14 7.2E-19 183.4 9.6 66 478-558 5-73 (540)
91 3b6e_A Interferon-induced heli 99.5 7.9E-14 2.7E-18 155.8 9.8 70 478-553 30-99 (216)
92 3crv_A XPD/RAD3 related DNA he 99.4 3.3E-12 1.1E-16 163.6 22.5 64 481-558 3-69 (551)
93 4a15_A XPD helicase, ATP-depen 99.4 2.5E-12 8.5E-17 166.3 20.7 69 480-558 2-73 (620)
94 3llm_A ATP-dependent RNA helic 99.4 1.2E-12 4.1E-17 149.2 14.1 71 480-557 60-130 (235)
95 1rif_A DAR protein, DNA helica 99.4 4.7E-13 1.6E-17 156.8 9.8 68 480-558 112-179 (282)
96 2fz4_A DNA repair protein RAD2 99.4 3.6E-13 1.2E-17 153.8 7.7 124 413-558 25-155 (237)
97 1z5z_A Helicase of the SNF2/RA 98.8 1.1E-08 3.7E-13 118.9 11.9 112 917-1109 111-224 (271)
98 2db3_A ATP-dependent RNA helic 98.8 2.9E-08 1E-12 123.4 16.7 61 1026-1101 336-396 (434)
99 3i5x_A ATP-dependent RNA helic 98.6 1.9E-07 6.5E-12 119.9 16.4 65 1023-1102 375-439 (563)
100 1xti_A Probable ATP-dependent 98.6 2.3E-07 7.9E-12 112.9 16.3 58 1027-1100 287-345 (391)
101 2i4i_A ATP-dependent RNA helic 98.6 1.7E-07 6E-12 115.1 15.1 59 1027-1101 313-372 (417)
102 2p6r_A Afuhel308 helicase; pro 98.6 1.8E-08 6E-13 133.1 4.3 97 1466-1570 596-692 (702)
103 1s2m_A Putative ATP-dependent 98.6 9.8E-07 3.3E-11 107.9 19.3 62 1024-1101 292-354 (400)
104 3oiy_A Reverse gyrase helicase 98.6 1.4E-07 4.8E-12 116.3 11.3 80 980-1108 277-364 (414)
105 2zj8_A DNA helicase, putative 98.5 8.7E-08 3E-12 126.8 9.2 99 1465-1564 605-704 (720)
106 2j0s_A ATP-dependent RNA helic 98.5 6.1E-07 2.1E-11 110.2 16.1 63 1024-1101 310-372 (410)
107 3fht_A ATP-dependent RNA helic 98.5 1.9E-06 6.4E-11 105.6 19.4 67 1023-1101 299-368 (412)
108 3sqw_A ATP-dependent RNA helic 98.5 1.9E-06 6.7E-11 111.0 20.3 63 1024-1101 325-387 (579)
109 2whx_A Serine protease/ntpase/ 98.5 3.2E-08 1.1E-12 127.8 3.6 71 1028-1100 389-465 (618)
110 3eiq_A Eukaryotic initiation f 98.5 5.5E-07 1.9E-11 110.5 14.4 59 1026-1100 316-375 (414)
111 2v6i_A RNA helicase; membrane, 98.5 1.8E-07 6.2E-12 116.1 10.0 70 1028-1100 205-278 (431)
112 2wv9_A Flavivirin protease NS2 98.5 5.2E-07 1.8E-11 117.4 14.1 65 1028-1095 444-517 (673)
113 3pey_A ATP-dependent RNA helic 98.5 2.3E-06 8E-11 103.8 18.5 68 1025-1101 278-345 (395)
114 2v1x_A ATP-dependent DNA helic 98.5 1.1E-06 3.9E-11 113.0 16.3 63 1023-1100 300-362 (591)
115 1oyw_A RECQ helicase, ATP-depe 98.4 4.3E-07 1.5E-11 115.4 11.5 62 1024-1100 270-331 (523)
116 3fmp_B ATP-dependent RNA helic 98.4 1.3E-07 4.6E-12 118.9 6.5 66 1023-1100 366-434 (479)
117 2z0m_A 337AA long hypothetical 98.4 2.1E-06 7.3E-11 101.9 15.5 60 1025-1100 251-311 (337)
118 1fuu_A Yeast initiation factor 98.4 9.1E-07 3.1E-11 107.6 11.3 59 1026-1100 295-354 (394)
119 2jlq_A Serine protease subunit 98.3 7.5E-07 2.6E-11 111.2 10.3 47 756-812 22-68 (451)
120 1hv8_A Putative ATP-dependent 98.3 7.8E-06 2.7E-10 98.1 18.5 60 1025-1100 273-333 (367)
121 3fho_A ATP-dependent RNA helic 98.3 4.9E-06 1.7E-10 105.4 15.0 60 1027-1100 394-458 (508)
122 4gl2_A Interferon-induced heli 98.2 2E-06 6.7E-11 113.4 8.6 81 980-1109 431-519 (699)
123 1gm5_A RECG; helicase, replica 98.1 8E-06 2.7E-10 107.7 13.0 62 1023-1100 622-685 (780)
124 1wp9_A ATP-dependent RNA helic 98.1 3.7E-05 1.3E-09 95.5 17.9 59 1023-1095 402-461 (494)
125 1tf5_A Preprotein translocase 98.0 2.3E-05 7.8E-10 101.9 12.7 40 757-807 100-139 (844)
126 4ddu_A Reverse gyrase; topoiso 97.9 1.5E-05 5.2E-10 109.2 11.1 47 753-810 93-139 (1104)
127 1gku_B Reverse gyrase, TOP-RG; 97.9 1.4E-05 4.7E-10 109.5 10.0 57 743-810 61-117 (1054)
128 1yks_A Genome polyprotein [con 97.9 2.5E-06 8.4E-11 106.2 2.3 70 1028-1099 211-285 (440)
129 2oca_A DAR protein, ATP-depend 97.9 3E-05 1E-09 98.2 12.2 79 981-1106 373-453 (510)
130 2fsf_A Preprotein translocase 97.8 2.8E-05 9.6E-10 100.8 8.6 40 757-807 91-130 (853)
131 2va8_A SSO2462, SKI2-type heli 97.7 2.5E-05 8.5E-10 103.2 7.7 97 1466-1565 617-714 (715)
132 2eyq_A TRCF, transcription-rep 97.7 0.00044 1.5E-08 95.4 19.8 58 1028-1101 852-911 (1151)
133 4a2p_A RIG-I, retinoic acid in 97.7 0.00027 9.1E-09 90.0 15.7 50 754-809 23-72 (556)
134 4a2q_A RIG-I, retinoic acid in 97.6 0.00037 1.3E-08 93.1 15.7 50 754-809 264-313 (797)
135 2fwr_A DNA repair protein RAD2 97.6 0.00019 6.3E-09 89.9 11.8 69 1024-1106 378-448 (472)
136 3tbk_A RIG-I helicase domain; 97.5 0.00069 2.4E-08 86.0 16.4 50 754-809 20-69 (555)
137 2xau_A PRE-mRNA-splicing facto 97.4 0.00086 2.9E-08 88.8 14.9 38 1027-1064 351-393 (773)
138 2ykg_A Probable ATP-dependent 97.4 0.0013 4.5E-08 86.4 16.2 52 753-810 28-79 (696)
139 1w36_D RECD, exodeoxyribonucle 97.3 0.0002 6.8E-09 92.5 7.9 63 483-555 151-215 (608)
140 4a2w_A RIG-I, retinoic acid in 97.1 0.0017 5.8E-08 88.1 13.9 50 754-809 264-313 (936)
141 3fmo_B ATP-dependent RNA helic 96.9 0.00045 1.5E-08 81.3 4.3 47 754-808 132-178 (300)
142 3dkp_A Probable ATP-dependent 96.8 0.00071 2.4E-08 76.7 4.2 49 753-808 66-114 (245)
143 3fe2_A Probable ATP-dependent 96.7 0.00079 2.7E-08 76.3 4.4 62 744-808 57-118 (242)
144 3iuy_A Probable ATP-dependent 96.7 0.00083 2.8E-08 75.3 3.8 55 752-808 56-110 (228)
145 3ly5_A ATP-dependent RNA helic 96.6 0.00078 2.7E-08 77.5 3.5 52 753-808 91-142 (262)
146 3h1t_A Type I site-specific re 96.5 0.019 6.5E-07 73.8 15.9 55 1028-1095 484-541 (590)
147 2oxc_A Probable ATP-dependent 96.5 0.0013 4.5E-08 73.9 4.0 48 753-808 61-108 (230)
148 1q0u_A Bstdead; DEAD protein, 96.4 0.0018 6.3E-08 72.0 4.8 47 754-808 42-88 (219)
149 1vec_A ATP-dependent RNA helic 96.4 0.0024 8.4E-08 70.0 5.6 49 753-809 40-88 (206)
150 3ber_A Probable ATP-dependent 96.4 0.0029 9.9E-08 72.2 6.0 49 753-809 80-128 (249)
151 1wrb_A DJVLGB; RNA helicase, D 96.3 0.0018 6.2E-08 73.8 4.2 56 753-808 60-116 (253)
152 2hjv_A ATP-dependent RNA helic 96.3 0.0017 5.9E-08 68.9 3.6 63 1024-1101 69-131 (163)
153 3bor_A Human initiation factor 96.3 0.0014 4.9E-08 74.0 3.0 49 753-809 67-115 (237)
154 1qde_A EIF4A, translation init 96.3 0.0032 1.1E-07 70.1 5.6 47 754-808 52-98 (224)
155 2pl3_A Probable ATP-dependent 96.3 0.002 7E-08 72.5 3.9 54 752-809 61-114 (236)
156 1fuk_A Eukaryotic initiation f 96.3 0.0016 5.5E-08 69.3 2.8 62 1024-1100 64-125 (165)
157 1t6n_A Probable ATP-dependent 96.2 0.0024 8.2E-08 71.0 3.9 48 753-808 51-98 (220)
158 3eaq_A Heat resistant RNA depe 96.2 0.0021 7.4E-08 71.4 3.3 65 1023-1102 64-128 (212)
159 2jgn_A DBX, DDX3, ATP-dependen 96.1 0.0021 7.1E-08 70.0 2.5 62 1025-1101 81-142 (185)
160 2gxq_A Heat resistant RNA depe 96.0 0.0051 1.8E-07 67.4 5.4 50 754-808 39-88 (207)
161 1t5i_A C_terminal domain of A 95.9 0.0013 4.4E-08 70.7 0.1 62 1024-1100 65-126 (172)
162 2p6n_A ATP-dependent RNA helic 95.9 0.0025 8.5E-08 69.7 2.3 64 1023-1101 87-150 (191)
163 2yjt_D ATP-dependent RNA helic 94.7 0.0018 6.3E-08 69.2 0.0 62 1025-1101 65-126 (170)
164 2z83_A Helicase/nucleoside tri 95.6 0.0059 2E-07 76.1 4.3 69 1028-1100 224-300 (459)
165 3i32_A Heat resistant RNA depe 95.2 0.0054 1.9E-07 71.9 1.9 65 1023-1102 61-125 (300)
166 4b3f_X DNA-binding protein smu 94.8 0.034 1.2E-06 72.3 8.0 68 480-558 188-255 (646)
167 3l9o_A ATP-dependent RNA helic 94.6 0.017 5.8E-07 79.3 4.4 146 750-941 196-344 (1108)
168 2rb4_A ATP-dependent RNA helic 94.6 0.0099 3.4E-07 63.7 1.7 68 1024-1100 68-135 (175)
169 2gk6_A Regulator of nonsense t 94.4 0.05 1.7E-06 70.4 8.0 70 478-558 177-246 (624)
170 3upu_A ATP-dependent DNA helic 94.4 0.056 1.9E-06 67.3 8.1 69 478-556 22-94 (459)
171 4a15_A XPD helicase, ATP-depen 94.1 0.04 1.4E-06 71.1 6.0 47 752-808 21-67 (620)
172 2xgj_A ATP-dependent RNA helic 94.0 0.037 1.3E-06 75.3 5.8 144 751-940 99-245 (1010)
173 3b6e_A Interferon-induced heli 94.0 0.028 9.7E-07 61.6 3.8 49 754-807 49-97 (216)
174 2xzl_A ATP-dependent helicase 93.8 0.059 2E-06 71.5 7.0 70 478-558 357-426 (802)
175 4a4z_A Antiviral helicase SKI2 93.5 0.27 9.1E-06 66.9 12.7 138 478-635 37-224 (997)
176 3lfu_A DNA helicase II; SF1 he 93.4 0.07 2.4E-06 69.2 6.5 69 480-558 8-76 (647)
177 2wjy_A Regulator of nonsense t 93.3 0.1 3.5E-06 69.1 8.0 70 478-558 353-422 (800)
178 3crv_A XPD/RAD3 related DNA he 93.3 0.062 2.1E-06 68.5 5.7 43 753-809 22-64 (551)
179 1rif_A DAR protein, DNA helica 93.2 0.076 2.6E-06 61.4 5.7 44 755-808 130-173 (282)
180 2vl7_A XPD; helicase, unknown 92.4 0.1 3.4E-06 66.4 5.8 43 753-809 26-68 (540)
181 3e1s_A Exodeoxyribonuclease V, 92.4 0.16 5.5E-06 64.8 7.7 63 481-555 189-251 (574)
182 1pjr_A PCRA; DNA repair, DNA r 91.1 0.22 7.5E-06 65.6 7.0 69 480-558 10-78 (724)
183 1uaa_A REP helicase, protein ( 90.8 0.19 6.7E-06 65.5 6.1 68 481-558 2-69 (673)
184 3o8b_A HCV NS3 protease/helica 90.7 0.14 4.8E-06 66.0 4.5 86 753-857 232-362 (666)
185 1wcn_A Transcription elongatio 90.0 0.37 1.3E-05 43.5 5.3 57 1505-1561 6-62 (70)
186 3u4q_A ATP-dependent helicase/ 89.8 0.32 1.1E-05 67.9 7.2 71 480-558 9-79 (1232)
187 2fz4_A DNA repair protein RAD2 89.3 0.18 6.1E-06 56.8 3.4 40 755-808 110-149 (237)
188 1w36_D RECD, exodeoxyribonucle 89.1 0.43 1.5E-05 61.4 7.2 46 754-808 165-212 (608)
189 1nkt_A Preprotein translocase 88.1 0.31 1.1E-05 63.9 4.7 71 916-1025 458-528 (922)
190 3llm_A ATP-dependent RNA helic 87.7 0.52 1.8E-05 52.7 5.8 105 753-869 76-231 (235)
191 3rc3_A ATP-dependent RNA helic 86.8 0.45 1.5E-05 61.8 5.1 71 1023-1100 353-430 (677)
192 3dmq_A RNA polymerase-associat 86.4 0.26 8.8E-06 67.0 2.7 69 480-558 152-221 (968)
193 2ipc_A Preprotein translocase 85.3 0.45 1.5E-05 62.4 3.9 41 757-808 96-136 (997)
194 1c4o_A DNA nucleotide excision 83.9 0.35 1.2E-05 62.9 2.1 59 1023-1095 472-536 (664)
195 2d7d_A Uvrabc system protein B 83.1 0.38 1.3E-05 62.6 1.9 64 1023-1094 478-541 (661)
196 3ec2_A DNA replication protein 82.5 1.2 4.2E-05 47.2 5.4 39 478-516 11-57 (180)
197 3i4u_A ATP-dependent RNA helic 81.2 1.9 6.5E-05 49.4 6.7 79 1186-1271 14-92 (270)
198 2kz3_A Putative uncharacterize 81.1 2.6 9E-05 39.2 6.2 50 1511-1560 9-58 (83)
199 2o0j_A Terminase, DNA packagin 79.0 3.1 0.00011 50.2 7.7 65 481-555 163-227 (385)
200 2a1j_A DNA repair endonuclease 78.6 1.7 5.7E-05 38.3 3.9 54 1361-1415 3-57 (63)
201 1z5z_A Helicase of the SNF2/RA 78.1 0.57 2E-05 53.8 1.0 61 1024-1100 147-210 (271)
202 3n70_A Transport activator; si 77.0 1.5 5.2E-05 44.9 3.8 23 494-516 21-43 (145)
203 3co5_A Putative two-component 76.9 1.6 5.4E-05 44.8 3.8 21 494-514 24-44 (143)
204 3cpe_A Terminase, DNA packagin 76.6 3.7 0.00013 52.5 8.0 65 481-555 163-227 (592)
205 2oap_1 GSPE-2, type II secreti 73.6 2.2 7.4E-05 53.6 4.6 35 480-514 243-277 (511)
206 1wcn_A Transcription elongatio 72.8 3 0.0001 37.5 4.1 52 1363-1414 8-61 (70)
207 1z00_B DNA repair endonuclease 72.2 2 6.8E-05 40.2 2.8 53 1362-1415 18-71 (84)
208 2w58_A DNAI, primosome compone 69.8 7.2 0.00025 41.9 7.2 19 498-516 55-73 (202)
209 3syl_A Protein CBBX; photosynt 68.6 7.3 0.00025 44.9 7.3 21 497-517 67-87 (309)
210 1z63_A Helicase of the SNF2/RA 67.7 1.3 4.6E-05 55.1 0.8 67 480-556 36-105 (500)
211 2chg_A Replication factor C sm 66.8 15 0.0005 39.3 8.9 20 498-517 39-58 (226)
212 1e9r_A Conjugal transfer prote 66.3 4.7 0.00016 49.3 5.3 44 496-550 52-95 (437)
213 2w00_A HSDR, R.ECOR124I; ATP-b 61.9 3.2 0.00011 56.5 2.7 70 992-1107 636-707 (1038)
214 1ofh_A ATP-dependent HSL prote 61.4 7.5 0.00026 44.6 5.5 20 497-516 50-69 (310)
215 3e1s_A Exodeoxyribonuclease V, 59.8 16 0.00054 46.5 8.5 56 755-821 206-292 (574)
216 1a5t_A Delta prime, HOLB; zinc 59.3 15 0.00051 43.2 7.7 37 482-518 3-45 (334)
217 2bjv_A PSP operon transcriptio 58.9 5.6 0.00019 44.9 3.8 22 494-515 26-47 (265)
218 2qgz_A Helicase loader, putati 58.5 7.4 0.00025 45.3 4.8 21 497-517 152-172 (308)
219 3idu_A Uncharacterized protein 57.3 76 0.0026 31.8 11.3 87 1560-1662 14-102 (127)
220 3hu3_A Transitional endoplasmi 56.7 17 0.00058 45.2 7.9 21 496-516 237-257 (489)
221 4ag6_A VIRB4 ATPase, type IV s 55.6 8.7 0.0003 46.2 4.9 42 496-548 34-75 (392)
222 1iqp_A RFCS; clamp loader, ext 55.6 19 0.00063 41.5 7.6 19 499-517 48-66 (327)
223 1xx6_A Thymidine kinase; NESG, 55.3 9.6 0.00033 41.2 4.6 39 497-546 8-46 (191)
224 2dr3_A UPF0273 protein PH0284; 55.1 9.4 0.00032 42.1 4.8 39 495-544 21-59 (247)
225 2b8t_A Thymidine kinase; deoxy 54.3 8.9 0.0003 42.6 4.3 40 496-546 11-50 (223)
226 2qz4_A Paraplegin; AAA+, SPG7, 54.1 24 0.00081 39.3 8.0 21 751-771 37-57 (262)
227 1jbk_A CLPB protein; beta barr 53.9 5.5 0.00019 41.6 2.4 19 497-515 43-61 (195)
228 3syl_A Protein CBBX; photosynt 53.6 23 0.0008 40.5 8.0 93 754-853 68-177 (309)
229 3hgt_A HDA1 complex subunit 3; 53.4 48 0.0016 38.7 10.4 23 917-939 124-146 (328)
230 2orw_A Thymidine kinase; TMTK, 53.0 14 0.00046 39.6 5.4 39 497-546 3-41 (184)
231 1ojl_A Transcriptional regulat 51.7 7.8 0.00027 45.0 3.5 22 495-516 23-44 (304)
232 3jux_A Protein translocase sub 51.3 11 0.00036 48.9 4.7 40 757-807 92-131 (822)
233 1z3i_X Similar to RAD54-like; 51.3 8 0.00027 50.0 3.8 73 480-557 54-134 (644)
234 3a8t_A Adenylate isopentenyltr 51.2 6.6 0.00023 46.3 2.7 21 497-517 40-60 (339)
235 2p65_A Hypothetical protein PF 50.9 5.2 0.00018 41.8 1.7 21 497-517 43-63 (187)
236 3foz_A TRNA delta(2)-isopenten 50.6 6.4 0.00022 45.9 2.4 19 499-517 12-30 (316)
237 4b4t_J 26S protease regulatory 50.4 37 0.0013 41.0 9.0 22 496-517 181-202 (405)
238 1g5t_A COB(I)alamin adenosyltr 50.3 15 0.0005 40.0 5.0 46 490-546 21-66 (196)
239 3upu_A ATP-dependent DNA helic 50.3 13 0.00046 45.7 5.5 43 755-807 47-89 (459)
240 2i1q_A DNA repair and recombin 50.2 14 0.00049 43.0 5.4 55 1507-1561 4-58 (322)
241 3bos_A Putative DNA replicatio 49.8 6.8 0.00023 42.9 2.5 22 496-517 51-72 (242)
242 2pt7_A CAG-ALFA; ATPase, prote 49.6 7.8 0.00027 45.7 3.0 24 490-513 164-187 (330)
243 3vkw_A Replicase large subunit 49.4 7.3 0.00025 47.7 2.8 42 500-557 164-205 (446)
244 2gza_A Type IV secretion syste 49.2 12 0.0004 44.7 4.5 25 490-514 168-192 (361)
245 3exa_A TRNA delta(2)-isopenten 49.2 6.9 0.00024 45.7 2.4 20 498-517 4-23 (322)
246 2zts_A Putative uncharacterize 48.7 12 0.0004 41.4 4.2 28 496-523 29-56 (251)
247 2kjq_A DNAA-related protein; s 48.4 25 0.00087 36.0 6.4 21 496-516 35-55 (149)
248 3h4m_A Proteasome-activating n 47.6 37 0.0013 38.4 8.3 21 751-771 49-69 (285)
249 3nbx_X ATPase RAVA; AAA+ ATPas 47.3 9.5 0.00033 47.6 3.4 24 492-515 36-59 (500)
250 3hws_A ATP-dependent CLP prote 47.2 8.2 0.00028 45.9 2.7 21 496-516 50-70 (363)
251 2l3b_A Conserved protein found 46.9 70 0.0024 31.7 8.5 97 1574-1677 21-118 (130)
252 4b4t_K 26S protease regulatory 46.7 42 0.0014 40.9 8.9 21 497-517 206-226 (428)
253 3trf_A Shikimate kinase, SK; a 45.5 8.9 0.0003 40.5 2.4 21 497-517 5-25 (185)
254 2kz3_A Putative uncharacterize 45.4 27 0.00093 32.4 5.3 40 1364-1403 6-46 (83)
255 2r44_A Uncharacterized protein 45.2 9.1 0.00031 44.7 2.7 24 492-515 41-64 (331)
256 1njg_A DNA polymerase III subu 43.9 16 0.00053 39.6 4.2 17 499-515 47-63 (250)
257 3te6_A Regulatory protein SIR3 43.7 8.6 0.00029 45.1 2.1 27 496-523 44-70 (318)
258 3dm5_A SRP54, signal recogniti 43.5 70 0.0024 39.1 10.1 45 498-553 101-147 (443)
259 3hu3_A Transitional endoplasmi 43.5 36 0.0012 42.3 7.8 91 750-854 235-347 (489)
260 1kgd_A CASK, peripheral plasma 43.4 10 0.00035 40.1 2.5 21 496-516 4-24 (180)
261 2ius_A DNA translocase FTSK; n 43.3 25 0.00084 43.9 6.2 44 496-546 166-209 (512)
262 3cf0_A Transitional endoplasmi 43.1 9.6 0.00033 44.1 2.4 21 496-516 48-68 (301)
263 1d2n_A N-ethylmaleimide-sensit 42.9 8.3 0.00028 43.7 1.8 20 497-516 64-83 (272)
264 2qz4_A Paraplegin; AAA+, SPG7, 42.8 10 0.00034 42.4 2.4 21 496-516 38-58 (262)
265 3vaa_A Shikimate kinase, SK; s 42.6 11 0.00036 40.7 2.5 23 495-517 23-45 (199)
266 3h4m_A Proteasome-activating n 42.4 10 0.00034 43.2 2.4 21 496-516 50-70 (285)
267 2eyu_A Twitching motility prot 42.4 11 0.00038 42.8 2.7 22 494-515 22-43 (261)
268 3b9p_A CG5977-PA, isoform A; A 42.2 10 0.00034 43.5 2.4 20 496-515 53-72 (297)
269 3jvv_A Twitching mobility prot 42.1 8.4 0.00029 45.9 1.7 21 494-514 120-140 (356)
270 3uk6_A RUVB-like 2; hexameric 42.0 9.9 0.00034 45.0 2.3 21 497-517 70-90 (368)
271 2qmh_A HPR kinase/phosphorylas 41.7 12 0.00041 40.8 2.6 21 496-516 33-53 (205)
272 2ze6_A Isopentenyl transferase 41.2 10 0.00036 42.6 2.3 18 499-516 3-20 (253)
273 1jbk_A CLPB protein; beta barr 41.2 46 0.0016 34.3 7.3 21 751-771 41-61 (195)
274 3tau_A Guanylate kinase, GMP k 41.0 14 0.00048 40.1 3.2 20 496-515 7-26 (208)
275 1um8_A ATP-dependent CLP prote 40.9 12 0.0004 44.7 2.7 20 497-516 72-91 (376)
276 3bos_A Putative DNA replicatio 40.9 42 0.0015 36.3 7.2 61 752-823 51-119 (242)
277 1ex7_A Guanylate kinase; subst 40.7 12 0.00041 40.2 2.5 17 498-514 2-18 (186)
278 3bh0_A DNAB-like replicative h 40.0 22 0.00076 41.4 4.9 40 495-545 66-105 (315)
279 3iij_A Coilin-interacting nucl 39.8 14 0.00046 38.9 2.8 21 496-516 10-30 (180)
280 1p9r_A General secretion pathw 39.7 22 0.00076 43.2 5.0 31 484-514 153-184 (418)
281 1qhx_A CPT, protein (chloramph 39.6 13 0.00044 38.9 2.5 20 497-516 3-22 (178)
282 1sxj_B Activator 1 37 kDa subu 39.3 40 0.0014 38.5 7.0 20 499-518 44-63 (323)
283 3vfd_A Spastin; ATPase, microt 39.1 52 0.0018 39.3 8.1 19 753-771 148-166 (389)
284 1g8p_A Magnesium-chelatase 38 39.1 13 0.00045 43.5 2.7 21 496-516 44-64 (350)
285 3crm_A TRNA delta(2)-isopenten 39.0 14 0.00048 43.3 2.9 20 498-517 6-25 (323)
286 1lv7_A FTSH; alpha/beta domain 39.0 12 0.00042 41.8 2.4 20 497-516 45-64 (257)
287 4b4t_J 26S protease regulatory 39.0 45 0.0015 40.2 7.3 88 753-854 182-294 (405)
288 2orw_A Thymidine kinase; TMTK, 38.6 23 0.0008 37.7 4.4 13 809-821 77-89 (184)
289 3eie_A Vacuolar protein sortin 38.5 12 0.00043 43.5 2.4 19 497-515 51-69 (322)
290 1pzn_A RAD51, DNA repair and r 38.4 38 0.0013 40.1 6.6 54 1507-1560 36-89 (349)
291 3d3q_A TRNA delta(2)-isopenten 38.4 13 0.00044 44.0 2.4 19 498-516 8-26 (340)
292 3eph_A TRNA isopentenyltransfe 38.3 12 0.00042 45.1 2.3 19 499-517 4-22 (409)
293 3lw7_A Adenylate kinase relate 38.1 13 0.00044 38.3 2.2 19 499-517 3-21 (179)
294 1hqc_A RUVB; extended AAA-ATPa 38.0 12 0.00043 43.2 2.3 21 496-516 37-57 (324)
295 3u61_B DNA polymerase accessor 38.0 1E+02 0.0035 35.4 10.2 29 489-517 37-68 (324)
296 3nwn_A Kinesin-like protein KI 37.7 19 0.00065 42.8 3.8 24 490-514 97-122 (359)
297 1ry6_A Internal kinesin; kines 37.6 19 0.00065 42.8 3.8 22 493-514 79-102 (360)
298 2w0m_A SSO2452; RECA, SSPF, un 37.4 23 0.00077 38.4 4.2 23 496-518 22-44 (235)
299 1l8q_A Chromosomal replication 37.1 15 0.0005 42.8 2.7 20 497-516 37-56 (324)
300 3pfi_A Holliday junction ATP-d 37.0 15 0.00051 42.9 2.8 19 498-516 56-74 (338)
301 1xwi_A SKD1 protein; VPS4B, AA 36.8 14 0.00047 43.3 2.4 19 497-515 45-63 (322)
302 2qor_A Guanylate kinase; phosp 36.5 16 0.00055 39.4 2.7 22 495-516 10-31 (204)
303 4akg_A Glutathione S-transfera 36.4 17 0.00059 54.0 3.8 27 488-514 1258-1284(2695)
304 3dc4_A Kinesin-like protein NO 36.3 20 0.00068 42.4 3.6 22 492-514 89-112 (344)
305 1kag_A SKI, shikimate kinase I 36.1 17 0.00057 37.7 2.7 20 496-515 3-22 (173)
306 1y63_A LMAJ004144AAA protein; 36.0 16 0.00053 38.8 2.5 21 496-516 9-29 (184)
307 1lvg_A Guanylate kinase, GMP k 36.0 19 0.00065 38.8 3.2 21 496-516 3-23 (198)
308 2qp9_X Vacuolar protein sortin 36.0 15 0.00052 43.5 2.6 20 497-516 84-103 (355)
309 4b4t_M 26S protease regulatory 36.0 40 0.0014 41.1 6.4 20 497-516 215-234 (434)
310 2c9o_A RUVB-like 1; hexameric 35.8 14 0.00049 45.4 2.4 21 497-517 63-83 (456)
311 1g41_A Heat shock protein HSLU 35.8 35 0.0012 41.8 5.8 20 497-516 50-69 (444)
312 1bg2_A Kinesin; motor protein, 35.6 22 0.00077 41.6 3.9 23 491-514 71-95 (325)
313 1u0j_A DNA replication protein 35.5 34 0.0011 38.9 5.2 45 472-517 75-124 (267)
314 2iut_A DNA translocase FTSK; n 35.4 39 0.0013 42.6 6.2 44 496-546 213-256 (574)
315 3ney_A 55 kDa erythrocyte memb 35.3 20 0.00069 38.9 3.2 21 496-516 18-38 (197)
316 2j9r_A Thymidine kinase; TK1, 35.0 32 0.0011 37.8 4.8 40 497-547 28-67 (214)
317 1u9l_A Transcription elongatio 34.8 20 0.0007 32.1 2.6 55 1508-1562 8-62 (70)
318 3d8b_A Fidgetin-like protein 1 34.6 16 0.00054 43.4 2.5 22 496-517 116-137 (357)
319 1sxj_D Activator 1 41 kDa subu 34.6 22 0.00074 41.6 3.7 24 493-516 52-77 (353)
320 2v1u_A Cell division control p 34.6 15 0.0005 43.5 2.2 22 496-517 43-64 (387)
321 1l8q_A Chromosomal replication 34.5 59 0.002 37.5 7.4 60 753-823 37-113 (324)
322 2j41_A Guanylate kinase; GMP, 34.3 17 0.00058 38.8 2.5 22 495-516 4-25 (207)
323 2l7q_A Conserved protein found 34.2 1.6E+02 0.0053 29.1 8.7 27 1574-1600 20-46 (124)
324 2ewv_A Twitching motility prot 34.2 17 0.00058 43.5 2.6 22 494-515 133-154 (372)
325 2z43_A DNA repair and recombin 34.2 26 0.00088 40.9 4.2 48 495-547 105-152 (324)
326 3t15_A Ribulose bisphosphate c 34.1 15 0.00052 42.3 2.1 19 498-516 37-55 (293)
327 2p65_A Hypothetical protein PF 34.0 68 0.0023 32.9 7.1 21 751-771 41-61 (187)
328 2y65_A Kinesin, kinesin heavy 33.9 24 0.00083 42.0 3.9 22 492-514 79-102 (365)
329 4b4t_L 26S protease subunit RP 33.9 45 0.0016 40.7 6.4 21 497-517 215-235 (437)
330 3b6u_A Kinesin-like protein KI 33.8 24 0.00082 42.2 3.8 22 492-514 96-119 (372)
331 2h58_A Kinesin-like protein KI 33.8 25 0.00085 41.3 3.9 25 489-514 72-98 (330)
332 1z3e_B DNA-directed RNA polyme 33.8 65 0.0022 29.1 5.7 55 1507-1562 10-64 (73)
333 3bgw_A DNAB-like replicative h 33.6 32 0.0011 42.2 5.0 40 495-545 195-234 (444)
334 4fcw_A Chaperone protein CLPB; 33.5 16 0.00053 42.0 2.1 19 498-516 48-66 (311)
335 2vvg_A Kinesin-2; motor protei 33.5 25 0.00086 41.6 3.9 22 492-514 84-107 (350)
336 2r62_A Cell division protease 33.4 10 0.00036 42.6 0.6 21 497-517 44-64 (268)
337 3vfd_A Spastin; ATPase, microt 33.4 16 0.00056 43.7 2.4 20 497-516 148-167 (389)
338 3eie_A Vacuolar protein sortin 33.4 67 0.0023 37.2 7.6 17 755-771 53-69 (322)
339 1u94_A RECA protein, recombina 33.3 32 0.0011 40.9 4.8 42 496-548 62-103 (356)
340 4a14_A Kinesin, kinesin-like p 33.2 26 0.00088 41.5 3.9 23 491-514 77-101 (344)
341 2zfi_A Kinesin-like protein KI 33.2 25 0.00087 41.9 3.9 24 490-514 82-107 (366)
342 1t5c_A CENP-E protein, centrom 32.9 26 0.00087 41.6 3.8 24 490-514 70-95 (349)
343 3gbj_A KIF13B protein; kinesin 32.8 26 0.00087 41.7 3.8 25 489-514 84-110 (354)
344 2nr8_A Kinesin-like protein KI 32.7 26 0.00088 41.7 3.8 24 490-514 96-121 (358)
345 2r5o_A Putative ATP binding co 32.7 47 0.0016 35.5 5.6 107 1568-1677 52-171 (188)
346 4b4t_H 26S protease regulatory 32.5 56 0.0019 40.1 6.8 22 496-517 242-263 (467)
347 3u06_A Protein claret segregat 32.5 24 0.00082 42.8 3.6 25 489-514 130-156 (412)
348 1zp6_A Hypothetical protein AT 32.5 16 0.00054 38.6 1.8 21 495-515 7-27 (191)
349 1goj_A Kinesin, kinesin heavy 32.4 25 0.00084 41.8 3.6 21 493-514 76-98 (355)
350 3cob_A Kinesin heavy chain-lik 32.4 22 0.00077 42.4 3.2 25 489-514 71-97 (369)
351 1f2t_A RAD50 ABC-ATPase; DNA d 32.3 19 0.00064 37.1 2.3 17 499-515 25-41 (149)
352 3lre_A Kinesin-like protein KI 32.3 25 0.00085 41.8 3.6 23 491-514 99-123 (355)
353 1x88_A Kinesin-like protein KI 32.1 25 0.00085 41.8 3.6 24 490-514 81-106 (359)
354 4etp_A Kinesin-like protein KA 32.1 27 0.00092 42.2 3.9 25 489-514 132-158 (403)
355 3tr0_A Guanylate kinase, GMP k 31.9 20 0.00068 38.3 2.5 21 495-515 5-25 (205)
356 2z4s_A Chromosomal replication 31.7 36 0.0012 41.6 5.1 20 497-516 130-149 (440)
357 2wbe_C Bipolar kinesin KRP-130 31.7 26 0.00089 41.9 3.6 22 492-514 95-118 (373)
358 3te6_A Regulatory protein SIR3 31.7 1E+02 0.0035 35.9 8.7 43 811-859 135-177 (318)
359 2heh_A KIF2C protein; kinesin, 31.6 26 0.0009 42.0 3.7 24 490-514 127-152 (387)
360 2ce7_A Cell division protein F 31.6 1E+02 0.0036 37.9 9.2 18 754-771 50-67 (476)
361 1v8k_A Kinesin-like protein KI 31.5 28 0.00097 42.1 3.9 23 491-514 148-172 (410)
362 4b4t_I 26S protease regulatory 31.5 41 0.0014 40.9 5.3 21 497-517 216-236 (437)
363 3a00_A Guanylate kinase, GMP k 31.3 22 0.00075 37.7 2.7 17 498-514 2-18 (186)
364 1lv7_A FTSH; alpha/beta domain 31.0 1.2E+02 0.0042 33.4 9.1 18 754-771 46-63 (257)
365 1x4q_A U4/U6 small nuclear rib 30.9 57 0.002 30.8 5.1 57 268-326 19-75 (92)
366 2qby_B CDC6 homolog 3, cell di 30.7 31 0.0011 40.8 4.2 20 497-516 45-64 (384)
367 3cmu_A Protein RECA, recombina 30.7 69 0.0024 46.3 8.1 52 490-552 1415-1471(2050)
368 3auy_A DNA double-strand break 30.3 19 0.00065 43.0 2.2 19 498-516 26-44 (371)
369 2q6t_A DNAB replication FORK h 30.3 33 0.0011 42.0 4.4 39 496-544 199-237 (444)
370 1in4_A RUVB, holliday junction 30.1 35 0.0012 39.9 4.5 20 498-517 52-71 (334)
371 1w4r_A Thymidine kinase; type 30.1 51 0.0018 35.6 5.3 12 809-820 92-103 (195)
372 1ixz_A ATP-dependent metallopr 29.9 21 0.00072 39.7 2.4 19 497-515 49-67 (254)
373 3k1j_A LON protease, ATP-depen 29.9 29 0.00099 44.3 3.9 28 489-516 52-79 (604)
374 2zr9_A Protein RECA, recombina 29.8 39 0.0013 40.0 4.7 39 496-545 60-98 (349)
375 3k4g_A DNA-directed RNA polyme 29.8 83 0.0028 29.4 5.8 55 1508-1563 14-68 (86)
376 4b4t_M 26S protease regulatory 29.8 88 0.003 38.1 7.9 18 754-771 216-233 (434)
377 2kjq_A DNAA-related protein; s 29.6 75 0.0026 32.4 6.4 58 753-822 36-97 (149)
378 4eun_A Thermoresistant glucoki 29.5 23 0.00079 38.0 2.5 21 496-516 28-48 (200)
379 2px0_A Flagellar biosynthesis 29.4 41 0.0014 38.8 4.8 23 496-518 104-126 (296)
380 4b4t_L 26S protease subunit RP 29.3 55 0.0019 40.0 6.0 18 754-771 216-233 (437)
381 1ly1_A Polynucleotide kinase; 29.3 22 0.00076 36.9 2.3 18 499-516 4-21 (181)
382 1xp8_A RECA protein, recombina 29.2 40 0.0014 40.2 4.7 40 496-546 73-112 (366)
383 2cvh_A DNA repair and recombin 29.1 25 0.00086 37.8 2.7 24 496-519 19-42 (220)
384 3vkw_A Replicase large subunit 29.1 24 0.00082 43.1 2.7 36 757-808 165-200 (446)
385 1kht_A Adenylate kinase; phosp 29.1 23 0.0008 37.1 2.4 20 497-516 3-22 (192)
386 2owm_A Nckin3-434, related to 29.0 32 0.0011 42.0 3.9 22 492-514 131-154 (443)
387 3vkg_A Dynein heavy chain, cyt 29.0 27 0.00091 52.7 3.7 26 488-513 1295-1320(3245)
388 3bfn_A Kinesin-like protein KI 29.0 25 0.00085 42.2 2.8 19 496-514 96-116 (388)
389 1jx4_A DNA polymerase IV (fami 28.9 81 0.0028 37.2 7.3 82 1352-1441 170-253 (352)
390 4a1f_A DNAB helicase, replicat 28.9 44 0.0015 39.4 4.9 40 494-544 43-82 (338)
391 2r6a_A DNAB helicase, replicat 28.9 37 0.0013 41.7 4.5 28 495-522 201-228 (454)
392 3n70_A Transport activator; si 28.8 76 0.0026 31.9 6.2 21 751-771 22-42 (145)
393 2chq_A Replication factor C sm 28.7 30 0.001 39.6 3.4 19 499-517 40-58 (319)
394 3qf7_A RAD50; ABC-ATPase, ATPa 28.6 22 0.00074 42.4 2.3 19 499-517 25-43 (365)
395 1knq_A Gluconate kinase; ALFA/ 28.5 21 0.00072 37.1 1.9 21 496-516 7-27 (175)
396 3kb2_A SPBC2 prophage-derived 28.4 24 0.00081 36.4 2.3 18 499-516 3-20 (173)
397 1w4r_A Thymidine kinase; type 28.2 45 0.0015 36.1 4.4 39 496-545 19-57 (195)
398 2zan_A Vacuolar protein sortin 28.1 23 0.00078 43.4 2.4 20 497-516 167-186 (444)
399 3t0q_A AGR253WP; kinesin, alph 28.1 25 0.00087 41.6 2.7 25 489-514 77-103 (349)
400 1sxj_A Activator 1 95 kDa subu 27.8 1.4E+02 0.0048 37.0 9.6 42 809-856 149-190 (516)
401 1cr0_A DNA primase/helicase; R 27.7 42 0.0014 38.3 4.4 25 494-518 32-56 (296)
402 1z6g_A Guanylate kinase; struc 27.6 34 0.0012 37.4 3.4 22 494-515 20-41 (218)
403 2bwj_A Adenylate kinase 5; pho 27.6 30 0.001 36.6 3.0 21 496-516 11-31 (199)
404 1w36_B RECB, exodeoxyribonucle 27.5 45 0.0015 46.2 5.4 63 498-560 17-80 (1180)
405 1v5w_A DMC1, meiotic recombina 27.2 35 0.0012 40.2 3.7 45 494-543 119-163 (343)
406 4b4t_I 26S protease regulatory 27.2 70 0.0024 38.9 6.3 19 753-771 216-234 (437)
407 4b4t_K 26S protease regulatory 27.1 58 0.002 39.6 5.7 18 754-771 207-224 (428)
408 1f9v_A Kinesin-like protein KA 27.0 29 0.00098 41.1 2.9 25 489-514 76-102 (347)
409 3u61_B DNA polymerase accessor 27.0 94 0.0032 35.7 7.4 78 756-853 51-144 (324)
410 2c95_A Adenylate kinase 1; tra 26.9 34 0.0012 36.0 3.3 24 494-517 6-29 (196)
411 2zpa_A Uncharacterized protein 26.8 41 0.0014 43.3 4.4 59 481-553 175-234 (671)
412 3pxg_A Negative regulator of g 26.8 25 0.00087 43.3 2.5 22 496-517 200-221 (468)
413 1sxj_C Activator 1 40 kDa subu 26.7 56 0.0019 38.1 5.4 29 489-517 36-66 (340)
414 1s96_A Guanylate kinase, GMP k 26.7 27 0.00094 38.4 2.5 22 494-515 13-34 (219)
415 1xwi_A SKD1 protein; VPS4B, AA 26.6 1.3E+02 0.0044 34.9 8.4 18 754-771 46-63 (322)
416 2orv_A Thymidine kinase; TP4A 26.6 47 0.0016 37.0 4.3 41 496-547 18-58 (234)
417 3io5_A Recombination and repai 26.5 58 0.002 38.1 5.2 51 496-556 28-78 (333)
418 3cm0_A Adenylate kinase; ATP-b 26.1 22 0.00074 37.4 1.5 21 496-516 3-23 (186)
419 2rep_A Kinesin-like protein KI 25.9 31 0.0011 41.2 2.9 25 489-514 107-133 (376)
420 1d2n_A N-ethylmaleimide-sensit 25.9 52 0.0018 37.0 4.7 19 753-771 64-82 (272)
421 3f9v_A Minichromosome maintena 25.8 25 0.00087 44.8 2.3 16 499-514 329-344 (595)
422 2v1u_A Cell division control p 25.7 1E+02 0.0035 36.0 7.5 21 751-771 42-62 (387)
423 3uie_A Adenylyl-sulfate kinase 25.7 26 0.00088 37.6 2.0 34 481-516 11-44 (200)
424 3pvs_A Replication-associated 25.6 29 0.00098 42.6 2.6 19 498-516 51-69 (447)
425 1b22_A DNA repair protein RAD5 25.5 40 0.0014 33.2 3.1 54 1363-1416 24-81 (114)
426 1fnn_A CDC6P, cell division co 25.5 28 0.00096 41.1 2.5 18 499-516 46-63 (389)
427 1gvn_B Zeta; postsegregational 25.5 26 0.00087 40.3 2.0 20 497-516 33-52 (287)
428 1nlf_A Regulatory protein REPA 25.4 68 0.0023 36.2 5.6 26 494-519 27-52 (279)
429 3kta_A Chromosome segregation 25.4 28 0.00095 36.5 2.2 18 499-516 28-45 (182)
430 1b22_A DNA repair protein RAD5 25.4 27 0.00093 34.4 1.9 58 1506-1563 23-82 (114)
431 3hr8_A Protein RECA; alpha and 25.4 44 0.0015 39.6 4.1 44 496-550 60-103 (356)
432 2qby_A CDC6 homolog 1, cell di 25.3 30 0.001 40.7 2.6 21 496-516 44-64 (386)
433 1iy2_A ATP-dependent metallopr 25.3 29 0.00099 39.3 2.4 18 498-515 74-91 (278)
434 3b85_A Phosphate starvation-in 25.2 69 0.0024 34.8 5.4 32 483-515 9-40 (208)
435 4b4t_H 26S protease regulatory 24.9 85 0.0029 38.5 6.5 19 753-771 243-261 (467)
436 2bdt_A BH3686; alpha-beta prot 24.9 23 0.00079 37.4 1.4 21 497-517 2-22 (189)
437 4gp7_A Metallophosphoesterase; 24.9 27 0.00093 36.5 1.9 21 496-516 8-28 (171)
438 3d8b_A Fidgetin-like protein 1 24.6 1E+02 0.0035 36.3 7.1 19 753-771 117-135 (357)
439 2chg_A Replication factor C sm 24.6 99 0.0034 32.5 6.5 18 754-771 39-56 (226)
440 2r8r_A Sensor protein; KDPD, P 24.5 58 0.002 36.1 4.5 24 499-522 8-31 (228)
441 1n0w_A DNA repair protein RAD5 24.5 37 0.0013 37.1 3.1 25 495-519 22-46 (243)
442 2r2a_A Uncharacterized protein 24.5 41 0.0014 36.4 3.3 19 500-518 8-26 (199)
443 3t61_A Gluconokinase; PSI-biol 24.5 30 0.001 37.0 2.2 20 497-516 18-37 (202)
444 2rhm_A Putative kinase; P-loop 24.4 28 0.00094 36.7 1.9 21 496-516 4-24 (193)
445 2a1j_A DNA repair endonuclease 24.3 68 0.0023 27.9 4.1 53 1505-1560 3-56 (63)
446 3ec2_A DNA replication protein 24.3 1E+02 0.0034 32.1 6.3 18 754-771 39-56 (180)
447 3gfk_B DNA-directed RNA polyme 24.2 75 0.0026 29.2 4.4 50 1513-1562 22-71 (79)
448 1sxj_A Activator 1 95 kDa subu 24.0 35 0.0012 42.6 3.1 20 498-517 78-97 (516)
449 1m7g_A Adenylylsulfate kinase; 24.0 45 0.0015 35.9 3.6 34 481-516 11-44 (211)
450 2b8t_A Thymidine kinase; deoxy 24.0 67 0.0023 35.4 5.0 18 757-774 16-33 (223)
451 2iyv_A Shikimate kinase, SK; t 23.9 36 0.0012 35.7 2.7 20 498-517 3-22 (184)
452 1zd8_A GTP:AMP phosphotransfer 23.9 32 0.0011 37.6 2.3 21 496-516 6-26 (227)
453 2ehv_A Hypothetical protein PH 23.6 49 0.0017 36.3 3.8 25 494-518 27-51 (251)
454 4b3f_X DNA-binding protein smu 23.2 68 0.0023 41.2 5.6 44 756-810 208-251 (646)
455 1zak_A Adenylate kinase; ATP:A 23.2 36 0.0012 37.0 2.6 22 496-517 4-25 (222)
456 3lnc_A Guanylate kinase, GMP k 23.2 27 0.00094 38.3 1.6 20 495-514 25-44 (231)
457 3gqc_A DNA repair protein REV1 23.1 51 0.0017 41.0 4.2 98 1340-1443 285-393 (504)
458 3qkt_A DNA double-strand break 23.1 32 0.0011 40.4 2.3 16 500-515 26-41 (339)
459 1tev_A UMP-CMP kinase; ploop, 23.1 30 0.001 36.3 1.9 20 497-516 3-22 (196)
460 3pxi_A Negative regulator of g 22.9 32 0.0011 45.2 2.5 23 496-518 200-222 (758)
461 1tue_A Replication protein E1; 22.8 41 0.0014 36.8 2.8 23 499-522 60-82 (212)
462 1via_A Shikimate kinase; struc 22.5 38 0.0013 35.2 2.5 20 498-517 5-24 (175)
463 2o0a_A S.cerevisiae chromosome 22.4 72 0.0025 36.4 4.8 31 490-520 84-116 (298)
464 1e6c_A Shikimate kinase; phosp 22.4 38 0.0013 34.8 2.5 19 498-516 3-21 (173)
465 1jr3_A DNA polymerase III subu 22.3 59 0.002 38.1 4.5 18 499-516 40-57 (373)
466 1znw_A Guanylate kinase, GMP k 22.3 38 0.0013 36.5 2.5 21 495-515 18-38 (207)
467 2qp9_X Vacuolar protein sortin 22.3 1.9E+02 0.0065 33.9 8.9 18 754-771 85-102 (355)
468 3fb4_A Adenylate kinase; psych 22.3 34 0.0012 36.9 2.1 18 499-516 2-19 (216)
469 3lfu_A DNA helicase II; SF1 he 22.2 75 0.0026 40.5 5.7 49 753-808 22-70 (647)
470 3m6a_A ATP-dependent protease 22.1 35 0.0012 43.0 2.5 21 496-516 107-127 (543)
471 3qks_A DNA double-strand break 22.1 36 0.0012 36.8 2.3 17 499-515 25-41 (203)
472 3cmu_A Protein RECA, recombina 22.1 56 0.0019 47.2 4.7 38 495-543 1079-1116(2050)
473 2pez_A Bifunctional 3'-phospho 22.0 34 0.0012 35.8 2.0 21 496-516 4-24 (179)
474 1z00_B DNA repair endonuclease 21.9 72 0.0024 29.6 3.9 52 1506-1560 18-70 (84)
475 3cf0_A Transitional endoplasmi 21.8 76 0.0026 36.4 5.1 19 753-771 49-67 (301)
476 2i1q_A DNA repair and recombin 21.6 77 0.0026 36.7 5.2 55 1363-1417 4-61 (322)
477 3cmw_A Protein RECA, recombina 21.5 61 0.0021 46.1 4.9 37 496-543 33-69 (1706)
478 3nwj_A ATSK2; P loop, shikimat 21.5 42 0.0014 37.7 2.7 22 496-517 47-68 (250)
479 1aky_A Adenylate kinase; ATP:A 21.4 40 0.0014 36.5 2.5 22 496-517 3-24 (220)
480 2ce7_A Cell division protein F 21.3 37 0.0013 42.0 2.4 20 497-516 49-68 (476)
481 3dl0_A Adenylate kinase; phosp 21.2 37 0.0013 36.7 2.1 18 499-516 2-19 (216)
482 1zuh_A Shikimate kinase; alpha 21.1 40 0.0014 34.8 2.3 20 498-517 8-27 (168)
483 2yvu_A Probable adenylyl-sulfa 21.1 36 0.0012 35.8 2.0 22 496-517 12-33 (186)
484 2x8a_A Nuclear valosin-contain 21.1 39 0.0013 38.4 2.4 19 498-516 45-63 (274)
485 2v54_A DTMP kinase, thymidylat 21.1 42 0.0014 35.7 2.5 21 496-516 3-23 (204)
486 3b9p_A CG5977-PA, isoform A; A 21.0 90 0.0031 35.3 5.6 18 754-771 55-72 (297)
487 1qf9_A UMP/CMP kinase, protein 21.0 38 0.0013 35.4 2.2 19 498-516 7-25 (194)
488 4dez_A POL IV 1, DNA polymeras 20.8 86 0.0029 37.0 5.4 60 1361-1421 177-237 (356)
489 2qt1_A Nicotinamide riboside k 20.8 39 0.0013 36.2 2.2 21 496-516 20-40 (207)
490 2z43_A DNA repair and recombin 20.6 21 0.00072 41.7 0.0 56 1506-1561 12-67 (324)
491 2cdn_A Adenylate kinase; phosp 20.5 43 0.0015 35.6 2.5 21 497-517 20-40 (201)
492 3asz_A Uridine kinase; cytidin 20.5 37 0.0013 36.5 1.9 20 496-515 5-24 (211)
493 2w58_A DNAI, primosome compone 20.2 1.7E+02 0.0059 30.7 7.3 18 754-771 55-72 (202)
494 2qgz_A Helicase loader, putati 20.2 1.3E+02 0.0045 34.6 6.7 19 753-771 152-170 (308)
495 3u4q_B ATP-dependent helicase/ 20.1 67 0.0023 44.4 4.9 39 501-547 5-43 (1166)
496 2o0j_A Terminase, DNA packagin 20.1 2.2E+02 0.0075 34.0 8.7 42 756-806 181-222 (385)
497 3pxi_A Negative regulator of g 20.0 37 0.0013 44.6 2.1 18 499-516 523-540 (758)
498 3c8u_A Fructokinase; YP_612366 20.0 39 0.0013 36.4 2.0 19 496-514 21-39 (208)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.3e-171 Score=1789.51 Aligned_cols=1035 Identities=79% Similarity=1.255 Sum_probs=973.7
Q ss_pred CCccccCCcccccccCCCccccccccCCCCchhhccCCCceEecCCCCCCCCCCCCCccCCCCccHHHHHhccCCCCCCH
Q psy14582 405 GTRQVLDLEDLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNR 484 (1689)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~~~~~~~yeev~vp~~~~~p~~~~~~l~~~~~Lp~~~~~~f~g~~~~tp 484 (1689)
.+++.+|||+|.|.+|+|+|+|+++.||.|+.+..++.|+|++||++.+.|....+.++++++||+|.+.+|+||++|||
T Consensus 3 ~p~~~~dl~~l~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~~~~~~f~g~~~ln~ 82 (1724)
T 4f92_B 3 APRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNR 82 (1724)
T ss_dssp CCCCCCCHHHHSCTTGGGCCCCCCCCCCSCCCEEECSSEEEEEECCCCCCCCCSSCCCCBTTTSCGGGSTTCTTCSBCCH
T ss_pred CccceecHhhhccccccccccCCceeCCCCCeecccCCcceEecCCCCCCCCCCcCCccchHhcCHHHHHhcCCCCCCCH
Confidence 46899999999999999999999999999999999999999999999988888888999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccccchhhc
Q psy14582 485 IQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLL 564 (1689)
Q Consensus 485 iQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll 564 (1689)
+|++++|.++++++|+|+|||||||||++|++||++.+.++....+....++.++||++||||||+|+++.|.+.+-.
T Consensus 83 iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~-- 160 (1724)
T 4f92_B 83 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLAT-- 160 (1724)
T ss_dssp HHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhh--
Confidence 999999999999999999999999999999999999999876655666678899999999999999999877654400
Q ss_pred cCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCccccceeEEEEechhhHHHH
Q psy14582 565 HDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKR 644 (1689)
Q Consensus 565 ~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~l~~ 644 (1689)
-++++..+ +| +...++
T Consensus 161 -----------------------~gi~V~~~-------------------tG----------------------d~~~~~ 176 (1724)
T 4f92_B 161 -----------------------YGITVAEL-------------------TG----------------------DHQLCK 176 (1724)
T ss_dssp -----------------------TTCCEEEC-------------------CS----------------------SCSSCC
T ss_pred -----------------------CCCEEEEE-------------------EC----------------------CCCCCc
Confidence 01111111 11 111111
Q ss_pred HHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCcccchhhhhhhccccCCccee
Q psy14582 645 FQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVV 724 (1689)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~~ 724 (1689)
.++. .++|+|+| || +||..++
T Consensus 177 ~~~~-------------~~~IlVtT--------pE-kld~llr------------------------------------- 197 (1724)
T 4f92_B 177 EEIS-------------ATQIIVCT--------PE-KWDIITR------------------------------------- 197 (1724)
T ss_dssp TTGG-------------GCSEEEEC--------HH-HHHHHTT-------------------------------------
T ss_pred cccC-------------CCCEEEEC--------HH-HHHHHHc-------------------------------------
Confidence 1122 78999999 99 9998887
Q ss_pred EEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhH
Q psy14582 725 KFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL 804 (1689)
Q Consensus 725 ~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L 804 (1689)
.+.+......
T Consensus 198 -------------------------------------~~~~~~~l~~--------------------------------- 207 (1724)
T 4f92_B 198 -------------------------------------KGGERTYTQL--------------------------------- 207 (1724)
T ss_dssp -------------------------------------SSTTHHHHTT---------------------------------
T ss_pred -------------------------------------CCccchhhcC---------------------------------
Confidence 3322222111
Q ss_pred HHHHhhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccc
Q psy14582 805 VQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVA 884 (1689)
Q Consensus 805 ~~q~v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~Rpvp 884 (1689)
++++|+||+|+++|+||+++|.+++|+++.....++++|+||||||+||++++|+||++.+..++++|+.++||+|
T Consensus 208 ----v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvp 283 (1724)
T 4f92_B 208 ----VRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVP 283 (1724)
T ss_dssp ----EEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSC
T ss_pred ----cCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCc
Confidence 8999999999999999999999999999988888899999999999999999999999987778999999999999
Q ss_pred eEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHH
Q psy14582 885 LEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRT 964 (1689)
Q Consensus 885 L~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~ 964 (1689)
|+++++++.......++..++..+++.+.+...++|+||||+||+.|+.+|+.|.+.+...+....+........+.+..
T Consensus 284 L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (1724)
T 4f92_B 284 LEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRT 363 (1724)
T ss_dssp EEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHH
T ss_pred cEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHh
Confidence 99999999988888888899999999988888889999999999999999999999888777777777777777778888
Q ss_pred hhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEE
Q psy14582 965 EADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVL 1044 (1689)
Q Consensus 965 ~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vL 1044 (1689)
......+..|++++++|||+|||||++.+|..||++|++|.++||
T Consensus 364 ~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vl----------------------------------- 408 (1724)
T 4f92_B 364 EAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVL----------------------------------- 408 (1724)
T ss_dssp TTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEE-----------------------------------
T ss_pred hhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEE-----------------------------------
Confidence 888888999999999999999999999999999999999999999
Q ss_pred EEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCcCCc
Q psy14582 1045 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLPV 1124 (1689)
Q Consensus 1045 VaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~pi 1124 (1689)
|||+||||||||||++|||+||++||+..|++.++|+.+|+||+|||||+|+|..|.+|+++++++..+|.++++++.||
T Consensus 409 vaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pi 488 (1724)
T 4f92_B 409 VSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPI 488 (1724)
T ss_dssp EECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCC
T ss_pred EEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCChhhhhhhHHHHHHHHHHHHHcCC
Q psy14582 1125 ESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGL 1204 (1689)
Q Consensus 1125 eS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~~lv~~al~~L~~~~~ 1204 (1689)
||+|...+.|++|+||++|++.+.+++++||++||+|+||.+||.+||+..+....|+.+++++.++|++++..|+++||
T Consensus 489 eS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~l 568 (1724)
T 4f92_B 489 ESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNL 568 (1724)
T ss_dssp CCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999998887777888999999999999999999999
Q ss_pred ceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCChHHHHHHHHHHhhCCCCCC
Q psy14582 1205 IKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIK 1284 (1689)
Q Consensus 1205 i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~~E~~~l~~l~~~~p~~~~ 1284 (1689)
|.+|++++.+.+|++||+||+|||++.||+.|++.+++.+++.++|+++|.|+||+++++|++|+.+|++|.+++|+|++
T Consensus 569 i~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~l~~~~~~~~~ 648 (1724)
T 4f92_B 569 VKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVK 648 (1724)
T ss_dssp EEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHHHHHHSSSCCC
T ss_pred eeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHHHHHHHHHHhcCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCcc
Q psy14582 1285 ESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPL 1364 (1689)
Q Consensus 1285 ~~~~~~~~K~~~Llqa~is~~~l~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pL 1364 (1689)
+++++|+.|+|+|||+|||++++++|+|.+|+.||.|+|.||+||++|||+.+||+..+..+++|||||++|||++++||
T Consensus 649 ~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~~~~w~~~~~L 728 (1724)
T 4f92_B 649 ESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPL 728 (1724)
T ss_dssp SCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTSCTTSCGG
T ss_pred CCCCChHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHhcCCCchhhccCChhhhhhhhcCChhhHHHHHHHHhCCcceEEEEeeccccceEEEEEeecCCCc
Q psy14582 1365 RQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQ 1444 (1689)
Q Consensus 1365 rQ~~~i~~~~i~~~~~~~~~~~~l~dl~~~el~~ll~~~~~g~~i~~~~~~~P~l~l~~~~~pi~~~~~~~~~~i~~~~~ 1444 (1689)
|||+++|.++++++++++++|+++++|++.|+++++++|++|+.|++++++||++++++++||||+++++|+++|+|+|+
T Consensus 729 ~q~~~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~~~~~~~~~ 808 (1724)
T 4f92_B 729 RQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQ 808 (1724)
T ss_dssp GGSTTSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEEEEESSSSEEEEEEEEEECSC
T ss_pred ecCCCCCHHHHHHHHhcCCCHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceEEEEEEecCCceEEEEEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccceEEEEEeccchh----------------------------------------------------------
Q psy14582 1445 WDEKLHGGSEGFWILVEDVDSE---------------------------------------------------------- 1466 (1689)
Q Consensus 1445 ~~~~~~~~~e~~wi~v~d~~~~---------------------------------------------------------- 1466 (1689)
|++++||+.|+|||||||++++
T Consensus 809 w~~~~h~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~~~~~~~~~~~~~ 888 (1724)
T 4f92_B 809 WDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHL 888 (1724)
T ss_dssp CCTTTTTTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEEEEESSSTTCEEEEEEECTTC
T ss_pred cchhhcCCceeEEEEEEecCCCeEEEEEEEEeeeeccCCceEEEEEEECCCCCCCeEEEEEEEccccCCCceeeeccccc
Confidence 9999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy14582 1467 -------------------------------------------------------------------------------- 1466 (1689)
Q Consensus 1467 -------------------------------------------------------------------------------- 1466 (1689)
T Consensus 889 ~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~ 968 (1724)
T 4f92_B 889 ILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLL 968 (1724)
T ss_dssp CCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14582 1467 -------------------------------------------------------------------------------- 1466 (1689)
Q Consensus 1467 -------------------------------------------------------------------------------- 1466 (1689)
T Consensus 969 ~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~ 1048 (1724)
T 4f92_B 969 QSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNIN 1048 (1724)
T ss_dssp HCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCS
T ss_pred hCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceee
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14582 1467 -------------------------------------------------------------------------------- 1466 (1689)
Q Consensus 1467 -------------------------------------------------------------------------------- 1466 (1689)
T Consensus 1049 lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~ 1128 (1724)
T 4f92_B 1049 LFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQG 1128 (1724)
T ss_dssp EEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEE
T ss_pred EEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEe
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14582 1467 -------------------------------------------------------------------------------- 1466 (1689)
Q Consensus 1467 -------------------------------------------------------------------------------- 1466 (1689)
T Consensus 1129 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L 1208 (1724)
T 4f92_B 1129 FNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTL 1208 (1724)
T ss_dssp ECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHH
T ss_pred ccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14582 1467 -------------------------------------------------------------------------------- 1466 (1689)
Q Consensus 1467 -------------------------------------------------------------------------------- 1466 (1689)
T Consensus 1209 ~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~G 1288 (1724)
T 4f92_B 1209 KETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVG 1288 (1724)
T ss_dssp HHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHT
T ss_pred HHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14582 1467 -------------------------------------------------------------------------------- 1466 (1689)
Q Consensus 1467 -------------------------------------------------------------------------------- 1466 (1689)
T Consensus 1289 RAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~ 1368 (1724)
T 4f92_B 1289 HANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPN 1368 (1724)
T ss_dssp TBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGG
T ss_pred cccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy14582 1467 -------------------------------------------------------------------------------- 1466 (1689)
Q Consensus 1467 -------------------------------------------------------------------------------- 1466 (1689)
T Consensus 1369 ~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il 1448 (1724)
T 4f92_B 1369 YYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEII 1448 (1724)
T ss_dssp GTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHh
Confidence
Q ss_pred ---------------------------------------------------------------------hHHHHhhhhhh
Q psy14582 1467 ---------------------------------------------------------------------AIRLIQACVDV 1477 (1689)
Q Consensus 1467 ---------------------------------------------------------------------~~rll~a~vdi 1477 (1689)
+.||++||+|+
T Consensus 1449 ~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~~~~~~D~~~i~~~~~rl~~a~~d~ 1528 (1724)
T 4f92_B 1449 SNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDV 1528 (1724)
T ss_dssp HTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccccccHHHHHHHHHhhCCCCCCccccCCHHHHHHHHHHHHHCCCcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999
Q ss_pred hccCCCchhHHHHHHHHHHhhhhccCCCcccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhhcCCHHHHHHHHH
Q psy14582 1478 LSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVAR 1557 (1689)
Q Consensus 1478 ~s~~gwL~~~l~~m~l~QmivQa~w~~~s~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll~l~~~q~~~v~~ 1557 (1689)
+++.||+++++++|+|+|||+||+|+.+++|+|||||+...+++|.+++++|++||++++++++.++|++++.+.++|++
T Consensus 1529 ~~~~g~~~~~~~~~~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~ 1608 (1724)
T 4f92_B 1529 LSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVAR 1608 (1724)
T ss_dssp HHHTTBHHHHHHHHHHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHhCCCcCCcCEecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEEEEeccccccCCCeEEEEEEEEecCCCCCccccCCCCCCCcccEEEEEEeCCCCeEEEEEeeccCcceE
Q psy14582 1558 FCNRYPNIELSYEVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAK 1637 (1689)
Q Consensus 1558 ~~~~~P~iei~~~v~~~~~i~~g~~~~l~v~l~R~~~~~~~v~aP~fP~~K~e~Wwvvvgd~~~~~l~~ikrv~~~~~~~ 1637 (1689)
|||+||+|+++|++.+.+.+.+|++++++|+++|+++..++|+||+||+.|.|+||+||||.++|+|+++||+++++..+
T Consensus 1609 ~~~~~P~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~k~e~w~~vvg~~~~~~l~~~kr~~~~~~~~ 1688 (1724)
T 4f92_B 1609 FCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAK 1688 (1724)
T ss_dssp HHHHSCCEEEEEEEETSSSCCTTSEEEEEEEEEESSCCCSCCCCTTSCSCCCCCEEEEEEETTTTEEEEEEEECCSSEEE
T ss_pred HHHhCCceEEEEEEecCccccCCCeEEEEEEEEecCCCCCeeecCCCCCCCccCEEEEEEECCCCeEEEEEEEecCCCce
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCceEEEEEEEEcCCCCCCCceEEEEEE
Q psy14582 1638 IKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFSID 1673 (1689)
Q Consensus 1638 ~~l~f~~p~~G~~~~~l~~~sDsY~G~D~e~~~~l~ 1673 (1689)
++++|.+|++|.|++++|+|||||+||||||+|+++
T Consensus 1689 ~~l~f~~p~~g~~~~~~~~~~d~y~g~d~~~~~~~~ 1724 (1724)
T 4f92_B 1689 VKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVD 1724 (1724)
T ss_dssp EEEEEECCSSSCEEEEEEEEESSCSSCCEEEEEEEC
T ss_pred EEEEEEeCCCCceeEEEEEEecCccccceeEEEecC
Confidence 999999999999999999999999999999999874
No 2
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.1e-117 Score=1240.51 Aligned_cols=744 Identities=36% Similarity=0.609 Sum_probs=691.5
Q ss_pred eeeeeeccCCccccccccCCCcceeEEEEeCCCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccc
Q psy14582 670 LRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIG 749 (1689)
Q Consensus 670 l~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~ 749 (1689)
++++++++|+|.|+..+||..|.||+||||++|+.|+||++|.+++++.+++|.+.|++|+++|+|||||++++||+|++
T Consensus 797 ~~~~~~~~~~~~w~~~~h~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~ 876 (1724)
T 4f92_B 797 LKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLS 876 (1724)
T ss_dssp EEEEEEEEECSCCCTTTTTTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEEEEESSSTT
T ss_pred EEEEEEEeeccccchhhcCCceeEEEEEEecCCCeEEEEEEEEeeeeccCCceEEEEEEECCCCCCCeEEEEEEEccccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeEe--------------------------------------------------------------ecCCCchH
Q psy14582 750 AETILPVSFR--------------------------------------------------------------LPRGAGKT 767 (1689)
Q Consensus 750 ~e~~~pv~~~--------------------------------------------------------------aPTGsGKT 767 (1689)
+++..|++|. ||||+|||
T Consensus 877 ~~~~~~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKT 956 (1724)
T 4f92_B 877 CETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKT 956 (1724)
T ss_dssp CEEEEEEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCH
T ss_pred CCceeeeccccccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCch
Confidence 9999887643 78999999
Q ss_pred HHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH---------------------------------------
Q psy14582 768 NVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM--------------------------------------- 808 (1689)
Q Consensus 768 ~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~--------------------------------------- 808 (1689)
+++.+++++.+.+. ++.++||++|+|+|+.|.
T Consensus 957 liaelail~~l~~~---------~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~T 1027 (1724)
T 4f92_B 957 ICAEFAILRMLLQS---------SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIIST 1027 (1724)
T ss_dssp HHHHHHHHHHHHHC---------TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHHhC---------CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEEC
Confidence 99999999988652 356899999999999982
Q ss_pred -------------------hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCC
Q psy14582 809 -------------------VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKP 869 (1689)
Q Consensus 809 -------------------v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~ 869 (1689)
++++|+||+|++++.+|+++|.+++|+++...+.+.++|+|+||||++|++++++||++.+
T Consensus 1028 PEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~ 1107 (1724)
T 4f92_B 1028 PEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSA 1107 (1724)
T ss_dssp HHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCS
T ss_pred HHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCC
Confidence 7899999999999999999999999998888888889999999999999999999999876
Q ss_pred CccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccc
Q psy14582 870 ETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLG 949 (1689)
Q Consensus 870 ~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~ 949 (1689)
. .+++|.+++||+|++.++.+++......++..+++.++..+.+...++|+||||+||+.|+.+|..|...+.......
T Consensus 1108 ~-~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~ 1186 (1724)
T 4f92_B 1108 T-STFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQ 1186 (1724)
T ss_dssp T-TEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTT
T ss_pred C-CeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchh
Confidence 4 489999999999999999999988888888899999999998888899999999999999999999988766554444
Q ss_pred hhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeeh
Q psy14582 950 QFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDR 1029 (1689)
Q Consensus 950 ~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R 1029 (1689)
.++. ...+.+......+.+..|++++.+|||+|||||++.+|..||++|++|.++||
T Consensus 1187 ~~~~---~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VL-------------------- 1243 (1724)
T 4f92_B 1187 RFLH---CTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVV-------------------- 1243 (1724)
T ss_dssp TTBC---SCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEE--------------------
T ss_pred hhhc---ccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEE--------------------
Confidence 4443 23455666777888999999999999999999999999999999999999999
Q ss_pred hhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCC
Q psy14582 1030 TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS 1109 (1689)
Q Consensus 1030 ~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~ 1109 (1689)
|||+|||||||+||++|||+||++||+..+++.++++.+|+||+|||||+|+|..|.|+++|...
T Consensus 1244 ---------------vaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1244 ---------------VASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp ---------------EEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred ---------------EEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhCcCCcccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCChhhhhhhH
Q psy14582 1110 ELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRA 1189 (1689)
Q Consensus 1110 ~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~ 1189 (1689)
+..+|.+++++++|+||+|...+.+++|+||+.|++.+++|+++||+|||+|+|+.+||+|||+.... ...++.+++
T Consensus 1309 ~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~---~~~~~~~l~ 1385 (1724)
T 4f92_B 1309 KKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGIS---HRHLSDHLS 1385 (1724)
T ss_dssp GHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCS---HHHHHHHHH
T ss_pred HHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccc---hhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997543 345788999
Q ss_pred HHHHHHHHHHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCChHHH
Q psy14582 1190 DLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEK 1269 (1689)
Q Consensus 1190 ~lv~~al~~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~~E~ 1269 (1689)
++|++++..|.++|||..++ ++.+.||++|++||+|||+|.||+.|...|++.++..++|+++|.++||+++++|++|+
T Consensus 1386 ~lv~~~l~~L~~~~~I~~~~-~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E~ 1464 (1724)
T 4f92_B 1386 ELVEQTLSDLEQSKCISIED-EMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHED 1464 (1724)
T ss_dssp HHHHHHHHHHHHTTSEEEET-TTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTHH
T ss_pred HHHHHHHHHHHHCCCEEEcC-CCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcCCcccccccccccHH
Confidence 99999999999999999875 46799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCC-CCCChhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy14582 1270 LELQKLMERAPIPIKE-STDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALS 1348 (1689)
Q Consensus 1270 ~~l~~l~~~~p~~~~~-~~~~~~~K~~~Llqa~is~~~l~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~ 1348 (1689)
..|.+|.+++|+++.+ .+++|+.|+++|||||+||++++ .++.+|+..|+++|.||++|++|+|...||...|..+|+
T Consensus 1465 ~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~-~~~~~D~~~i~~~~~rl~~a~~d~~~~~g~~~~~~~~~~ 1543 (1724)
T 4f92_B 1465 NLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAME 1543 (1724)
T ss_dssp HHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCccccCCHHHHHHHHHHHHHCCCcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998864 67899999999999999999998 689999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCccccCCCCCHHHHHHHHhcCC-CchhhccCChhhhhhhhcC-ChhhHHHHHHHHhCCcceEEEEee
Q psy14582 1349 LCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNF-PWERLYDLGPNEIGELIRV-PKLGKTIHKYVHQFPKLELATHIQ 1426 (1689)
Q Consensus 1349 L~k~i~~~~W~~~~pLrQ~~~i~~~~i~~~~~~~~-~~~~l~dl~~~el~~ll~~-~~~g~~i~~~~~~~P~l~l~~~~~ 1426 (1689)
|+|||.+++|++++||+|+|||+.+.+++|.++|+ ++.++.++++++++.+++. ++.|..|++++++||+++++++++
T Consensus 1544 l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~i~~~~~~~ 1623 (1724)
T 4f92_B 1544 LAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVV 1623 (1724)
T ss_dssp HHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHHHSCCEEEEEEEE
T ss_pred HHHHHHhCCCcCCcCEecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHHHHHHhCCceEEEEEEe
Confidence 99999999999999999999999999999999999 8999999999999999964 578999999999999999999997
Q ss_pred cc---c-cceEEEEEeecCCCccCccccc------ccceEEEEEeccchh
Q psy14582 1427 PI---T-RSTLRVELTISPDFQWDEKLHG------GSEGFWILVEDVDSE 1466 (1689)
Q Consensus 1427 pi---~-~~~~~~~~~i~~~~~~~~~~~~------~~e~~wi~v~d~~~~ 1466 (1689)
+. . +..+.|.|+++++.+.+..+|. +.|+||++|||.+++
T Consensus 1624 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~k~e~w~~vvg~~~~~ 1673 (1724)
T 4f92_B 1624 DKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSN 1673 (1724)
T ss_dssp TSSSCCTTSEEEEEEEEEESSCCCSCCCCTTSCSCCCCCEEEEEEETTTT
T ss_pred cCccccCCCeEEEEEEEEecCCCCCeeecCCCCCCCccCEEEEEEECCCC
Confidence 63 2 5568888889888777665553 689999999999887
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=6e-78 Score=796.05 Aligned_cols=649 Identities=24% Similarity=0.352 Sum_probs=514.6
Q ss_pred ccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccc
Q psy14582 468 LPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545 (1689)
Q Consensus 468 Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPt 545 (1689)
||+++.+.+. ||++|+|+|.++++.++ +|+|++++||||||||++|.+|+++.+.. +.+++|++|+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~~l~i~P~ 77 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIK-----------GGKSLYVVPL 77 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHT-TCSCEEEECSSHHHHHHHHHHHHHHHHHT-----------TCCEEEEESS
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCcEEEEcCCccHHHHHHHHHHHHHHHh-----------CCcEEEEeCc
Confidence 6677788885 89999999999999865 79999999999999999999999988762 3489999999
Q ss_pred hhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCc
Q psy14582 546 RSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFR 625 (1689)
Q Consensus 546 reLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r 625 (1689)
|+||.|++..+.+ .. ..+.++..+++... +
T Consensus 78 r~La~q~~~~~~~-~~-------------------------~~g~~v~~~~G~~~------------------------~ 107 (702)
T 2p6r_A 78 RALAGEKYESFKK-WE-------------------------KIGLRIGISTGDYE------------------------S 107 (702)
T ss_dssp HHHHHHHHHHHTT-TT-------------------------TTTCCEEEECSSCB------------------------C
T ss_pred HHHHHHHHHHHHH-HH-------------------------hcCCEEEEEeCCCC------------------------c
Confidence 9999999977732 10 00111111111000 0
Q ss_pred cccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCcc
Q psy14582 626 PVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVV 705 (1689)
Q Consensus 626 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~i 705 (1689)
. . +..+.++|+|+| |+ +|+...+.
T Consensus 108 ~------------~------------------~~~~~~~Iiv~T--------pe-~l~~~l~~----------------- 131 (702)
T 2p6r_A 108 R------------D------------------EHLGDCDIIVTT--------SE-KADSLIRN----------------- 131 (702)
T ss_dssp C------------S------------------SCSTTCSEEEEE--------HH-HHHHHHHT-----------------
T ss_pred c------------h------------------hhccCCCEEEEC--------HH-HHHHHHHc-----------------
Confidence 0 0 001278999999 99 77765541
Q ss_pred cchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccC
Q psy14582 706 LHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINAD 785 (1689)
Q Consensus 706 l~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~ 785 (1689)
+. .. +
T Consensus 132 ---------------------------------------------------------~~--~~---------l------- 136 (702)
T 2p6r_A 132 ---------------------------------------------------------RA--SW---------I------- 136 (702)
T ss_dssp ---------------------------------------------------------TC--SG---------G-------
T ss_pred ---------------------------------------------------------Ch--hH---------H-------
Confidence 00 00 0
Q ss_pred CCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHH
Q psy14582 786 GTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATL 864 (1689)
Q Consensus 786 ~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~ 864 (1689)
+.++++|+||+|.+++ .||..++.++.++.+ ..+++|+|+||||++|++++++|
T Consensus 137 ---------------------~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~----~~~~~~ii~lSATl~n~~~~~~~ 191 (702)
T 2p6r_A 137 ---------------------KAVSCLVVDEIHLLDSEKRGATLEILVTKMRR----MNKALRVIGLSATAPNVTEIAEW 191 (702)
T ss_dssp ---------------------GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH----HCTTCEEEEEECCCTTHHHHHHH
T ss_pred ---------------------hhcCEEEEeeeeecCCCCcccHHHHHHHHHHh----cCcCceEEEECCCcCCHHHHHHH
Confidence 0188999999999988 799999999988754 35689999999999999999999
Q ss_pred hhcCCCccEEEecCCCcccceEEEEEeec-----hh-----hHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHH
Q psy14582 865 LRIKPETGLFYFDNSFRPVALEQQYIGVT-----EK-----KALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934 (1689)
Q Consensus 865 L~~~~~~~~~~f~~~~RpvpL~~~~~~~~-----~~-----~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~ 934 (1689)
++.. .|...+||+|+...+.... .. .... +...+.+.+ ..++++||||+++++|+.+
T Consensus 192 l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~LVF~~s~~~~~~~ 258 (702)
T 2p6r_A 192 LDAD------YYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVK----FEELVEECV---AENGGVLVFESTRRGAEKT 258 (702)
T ss_dssp TTCE------EEECCCCSSCEEEEEECSSEEEEEETTEEEEEECC----HHHHHHHHH---HTTCCEEEECSSHHHHHHH
T ss_pred hCCC------cccCCCCCccceEEEeeCCeeeccCcchhhhhhhh----HHHHHHHHH---hcCCCEEEEcCCHHHHHHH
Confidence 9853 4678899999987654211 10 0000 112222222 2468999999999999999
Q ss_pred HHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcch
Q psy14582 935 ARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTAT 1014 (1689)
Q Consensus 935 a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~v 1014 (1689)
+..|...... ++.... ..+.+........+..|+++++.|+++|||||++.+|..+++.|++|.++||
T Consensus 259 a~~L~~~~~~------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vl----- 326 (702)
T 2p6r_A 259 AVKLSAITAK------YVENEG-LEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVV----- 326 (702)
T ss_dssp HHHHHHHHHT------TCCCSS-HHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEE-----
T ss_pred HHHHHHHHHh------hcChHH-HHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEE-----
Confidence 9999875322 111111 0111111222334466888889999999999999999999999999999999
Q ss_pred hccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCC
Q psy14582 1015 LAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRP 1094 (1689)
Q Consensus 1015 l~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~ 1094 (1689)
|||++++||||+|+.+|||.+++.||+ .+.++|..+|+||+|||||+
T Consensus 327 ------------------------------vaT~~l~~Gidip~~~~VI~~~~~yd~---~~~~~s~~~~~Qr~GRaGR~ 373 (702)
T 2p6r_A 327 ------------------------------VATPTLAAGVNLPARRVIVRSLYRFDG---YSKRIKVSEYKQMAGRAGRP 373 (702)
T ss_dssp ------------------------------EECSTTTSSSCCCBSEEEECCSEEESS---SEEECCHHHHHHHHTTBSCT
T ss_pred ------------------------------EECcHHhccCCCCceEEEEcCceeeCC---CCCcCCHHHHHHHhhhcCCC
Confidence 888889999999999999999999993 36789999999999999999
Q ss_pred CCCCccEEEEEecCCcHHHH-HHHh-hCcCCccccccc--ccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcc
Q psy14582 1095 QYDTKGEGVLITNHSELQYY-LSLL-NHQLPVESQMIS--KLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNL 1170 (1689)
Q Consensus 1095 g~d~~G~~iil~~~~~~~~y-~~ll-~~~~pieS~l~~--~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~ 1170 (1689)
|+|..|.|+++++..+...+ .+++ +.+.|++|+|.. .|.++++++++.|++.+.+|+.+|+++||+|+++.
T Consensus 374 g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~----- 448 (702)
T 2p6r_A 374 GMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE----- 448 (702)
T ss_dssp TTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-----
T ss_pred CCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh-----
Confidence 99999999999998876544 3455 478899999987 68899999999999999999999999999998763
Q ss_pred cCCCcccccCChhhhhhhHHHHHHHHHHHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCC-CCHHHH
Q psy14582 1171 YGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPT-LSEIEL 1249 (1689)
Q Consensus 1171 Yg~~~~~~~~d~~l~~~~~~lv~~al~~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~-~~~~~l 1249 (1689)
.+..+.+++|+..|.+.|+|..+ +.+.+|++|+++|+||++|.|+++|+..++.. .+..++
T Consensus 449 ---------------~~~~~~~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (702)
T 2p6r_A 449 ---------------ISLSYELERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGA 510 (702)
T ss_dssp ---------------CCCHHHHHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHCcCeeEC---CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHH
Confidence 12346799999999999999975 56899999999999999999999999999886 677899
Q ss_pred HHHHhcCcccccCcCChHHHHHHHHHHhh--CCC-CCCCCCCC-------hhHHHHHHHHHHHhccCCCC----chh-hh
Q psy14582 1250 FRVFSLSGEFRHITVREEEKLELQKLMER--API-PIKESTDE-------PSAKVNILLQAYISQLKLEG----FAL-MS 1314 (1689)
Q Consensus 1250 l~i~s~s~Ef~~i~vR~~E~~~l~~l~~~--~p~-~~~~~~~~-------~~~K~~~Llqa~is~~~l~~----~~l-~~ 1314 (1689)
|.++|+++||.++++|++| .++.+++.+ .++ +++. +.+ ++.|+++|||+|||+.+++. |.+ .+
T Consensus 511 l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~g 588 (702)
T 2p6r_A 511 LHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPS-DFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPG 588 (702)
T ss_dssp HHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCC-TTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHH
T ss_pred HHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCcc-hhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHH
Confidence 9999999999999999999 777776654 232 2211 223 89999999999999999764 665 78
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhcCC-CchhhccCCh
Q psy14582 1315 DMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNF-PWERLYDLGP 1393 (1689)
Q Consensus 1315 d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~~~i~~~~i~~~~~~~~-~~~~l~dl~~ 1393 (1689)
|+.+++++|.||++|+++||...||. .+++|++||.+++|++.+||.|+|||+.+.+++|.++|+ ++.++.+++
T Consensus 589 dl~~i~~~a~~l~~a~~~i~~~~g~~----~l~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~~- 663 (702)
T 2p6r_A 589 DLRRIVETAEWLSNAMNRIAEEVGNT----SVSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAEDIVRHR- 663 (702)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC----SSTTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHTTTCCSHHHHHHTH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHcCCCcchHhhhcCCCCCHHHHHHHHHcCCCCHHHHHhhh-
Confidence 99999999999999999999999998 788899999999999999999999999999999999998 889999889
Q ss_pred hhhhhhhcCChhhHHHHHHHHhCCcceEEEE
Q psy14582 1394 NEIGELIRVPKLGKTIHKYVHQFPKLELATH 1424 (1689)
Q Consensus 1394 ~el~~ll~~~~~g~~i~~~~~~~P~l~l~~~ 1424 (1689)
++++.+++ +++|+++++.++ +|.+++++.
T Consensus 664 ~~l~~ll~-~~~~~~i~~~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 664 EKVASLIG-RGIAERVVEGIS-VKSLNPESA 692 (702)
T ss_dssp HHHHHHHC-HHHHHHHHHHHH-HHC------
T ss_pred HHHHHHhC-hhHHHHHHHhcC-CCccCcchh
Confidence 99999998 999999999999 999998753
No 4
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.6e-77 Score=792.22 Aligned_cols=657 Identities=25% Similarity=0.356 Sum_probs=512.2
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.||+++.+.+. ||++|+|+|.++++.++.+++|+|++||||||||.+|.+|+++.+... +.+++|++|
T Consensus 14 ~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~il~i~P 83 (715)
T 2va8_A 14 KLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----------GGKAIYVTP 83 (715)
T ss_dssp SSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSEEEEECS
T ss_pred CCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----------CCeEEEEeC
Confidence 47999999986 899999999999998566899999999999999999999999887642 359999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
+|+||.|++..+.+-. . .+.++..+ +| +.
T Consensus 84 ~r~La~q~~~~~~~~~-~-------------------------~g~~v~~~-------------------~G------~~ 112 (715)
T 2va8_A 84 LRALTNEKYLTFKDWE-L-------------------------IGFKVAMT-------------------SG------DY 112 (715)
T ss_dssp CHHHHHHHHHHHGGGG-G-------------------------GTCCEEEC-------------------CS------CS
T ss_pred cHHHHHHHHHHHHHhh-c-------------------------CCCEEEEE-------------------eC------CC
Confidence 9999999997773211 0 01111111 11 00
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
.. .. +....++|+|+| |+ +|+...+.
T Consensus 113 ~~------------~~-----------------~~~~~~~Iiv~T--------pe-~l~~~~~~---------------- 138 (715)
T 2va8_A 113 DT------------DD-----------------AWLKNYDIIITT--------YE-KLDSLWRH---------------- 138 (715)
T ss_dssp SS------------CC-----------------GGGGGCSEEEEC--------HH-HHHHHHHH----------------
T ss_pred CC------------ch-----------------hhcCCCCEEEEc--------HH-HHHHHHhC----------------
Confidence 00 00 001278999999 99 77765540
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
+ ... +.
T Consensus 139 ----------------------------------------------------------~--~~~---------l~----- 144 (715)
T 2va8_A 139 ----------------------------------------------------------R--PEW---------LN----- 144 (715)
T ss_dssp ----------------------------------------------------------C--CGG---------GG-----
T ss_pred ----------------------------------------------------------C--hhH---------hh-----
Confidence 0 000 00
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT 863 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~ 863 (1689)
.++++|+||+|.+++ .+|..++.++.|+. +.|+|+||||++|++++++
T Consensus 145 -----------------------~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~--------~~~ii~lSATl~n~~~~~~ 193 (715)
T 2va8_A 145 -----------------------EVNYFVLDELHYLNDPERGPVVESVTIRAK--------RRNLLALSATISNYKQIAK 193 (715)
T ss_dssp -----------------------GEEEEEECSGGGGGCTTTHHHHHHHHHHHH--------TSEEEEEESCCTTHHHHHH
T ss_pred -----------------------ccCEEEEechhhcCCcccchHHHHHHHhcc--------cCcEEEEcCCCCCHHHHHH
Confidence 189999999999988 79999999988753 7899999999999999999
Q ss_pred HhhcCCCccEEEecCCCcccceEEEEEeechhh------HH----HHHHHhhHHHHHHHHHH-hCCCeEEEEeCChHHHH
Q psy14582 864 LLRIKPETGLFYFDNSFRPVALEQQYIGVTEKK------AL----KRFQVMNDIVYEKVMEH-AGRNQLLVFVHSRKETG 932 (1689)
Q Consensus 864 ~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~------~~----~~~~~m~~~~~~~i~~~-~~~~~vLVFv~srk~~~ 932 (1689)
|++.. .+...+||+|+...+....... .. ..+ ......+..+.+. ..++++||||+++++|+
T Consensus 194 ~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~ 266 (715)
T 2va8_A 194 WLGAE------PVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKV-HGDDAIIAYTLDSLSKNGQVLVFRNSRKMAE 266 (715)
T ss_dssp HHTCE------EEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEE-ESSSHHHHHHHHHHTTTCCEEEECSSHHHHH
T ss_pred HhCCC------ccCCCCCCCCceEEEEecCCcccceeeecCcchhhhc-ccchHHHHHHHHHHhcCCCEEEEECCHHHHH
Confidence 99853 3678899999887654322000 00 000 0001122222222 34689999999999999
Q ss_pred HHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhh------ccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCe
Q psy14582 933 KTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQ------VKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHI 1006 (1689)
Q Consensus 933 ~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~------~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i 1006 (1689)
.++..|....... ++. ......+...... ..+..|+++++.|+++|||||++.+|..+++.|++|.+
T Consensus 267 ~~a~~L~~~~~~~-----~~~--~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~ 339 (715)
T 2va8_A 267 STALKIANYMNFV-----SLD--ENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKI 339 (715)
T ss_dssp HHHHHHHHTTTSS-----CCC--HHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhhc-----cCC--hHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCC
Confidence 9999998753220 110 0011111112221 23456888899999999999999999999999999999
Q ss_pred EEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCc-ceecCHHHHH
Q psy14582 1007 QVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGR-WVELGALDVL 1085 (1689)
Q Consensus 1007 ~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~-~~~~s~~d~l 1085 (1689)
+|| |||++++||||+|+.+|||.+++.||+..+. +.++|..+|+
T Consensus 340 ~vl-----------------------------------vaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~ 384 (715)
T 2va8_A 340 KVI-----------------------------------VATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYK 384 (715)
T ss_dssp CEE-----------------------------------EECGGGGGSSCCCBSEEEECCC--------------CHHHHH
T ss_pred eEE-----------------------------------EEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHH
Confidence 999 8888888888889999999999999965433 5789999999
Q ss_pred HHhcccCCCCCCCccEEEEEecCCc-H-HHHHHHh-hCcCCccccccc--ccccchhhhhhhccccChHHHHHHHhhhhh
Q psy14582 1086 QMLGRAGRPQYDTKGEGVLITNHSE-L-QYYLSLL-NHQLPVESQMIS--KLPDMLNAEIVLGTVQNLKDAVTWLGYTYL 1160 (1689)
Q Consensus 1086 Qm~GRAGR~g~d~~G~~iil~~~~~-~-~~y~~ll-~~~~pieS~l~~--~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~ 1160 (1689)
||+|||||+|+|..|.|++++++.+ . .++.+++ +.+.|++|+|.. .|.++++++++.|++.+.+|+.+|+++||+
T Consensus 385 Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~ 464 (715)
T 2va8_A 385 QMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLL 464 (715)
T ss_dssp HHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSS
T ss_pred HHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHH
Confidence 9999999999999999999998866 3 4555665 478899999987 688999999999999999999999999999
Q ss_pred hhhhccCCcccCCCcccccCChhhhhhhHHHHHHHHHHHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhh
Q psy14582 1161 YIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLL 1240 (1689)
Q Consensus 1161 y~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~~lv~~al~~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l 1240 (1689)
|+|+.. .-+++|+..|.+.|+|..+ ++.+.+|++|+++|+||++|.|+++|...+
T Consensus 465 ~~~~~~-----------------------~~~~~al~~L~~~g~i~~~--~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~ 519 (715)
T 2va8_A 465 AKQLVD-----------------------VYFDRAIRWLLEHSFIKEE--GNTFALTNFGKRVADLYINPFTADIIRKGL 519 (715)
T ss_dssp CHHHHH-----------------------HHHHHHHHHHHHTTSEEEC--SSEEEECHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred Hhhcch-----------------------HHHHHHHHHHHHCcCEeec--CCeEeeChHHHHHHHHcCCHhHHHHHHHHh
Confidence 987421 1288999999999999975 357899999999999999999999999998
Q ss_pred CC--CCCHHHHHHHHhcCcccccCcCChHHHHHHHHHHhh-C-----CCCCCCC-CC--ChhHHHHHHHHHHHhccCCCC
Q psy14582 1241 KP--TLSEIELFRVFSLSGEFRHITVREEEKLELQKLMER-A-----PIPIKES-TD--EPSAKVNILLQAYISQLKLEG 1309 (1689)
Q Consensus 1241 ~~--~~~~~~ll~i~s~s~Ef~~i~vR~~E~~~l~~l~~~-~-----p~~~~~~-~~--~~~~K~~~Llqa~is~~~l~~ 1309 (1689)
+. ..+..++|.++|+++||.++++|++|+.+|.+++.+ . +.|+++. .+ .++.|+++|||+|||+.+++.
T Consensus 520 ~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~ 599 (715)
T 2va8_A 520 EGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDT 599 (715)
T ss_dssp HHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred hhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHH
Confidence 87 478899999999999999999999999999998652 2 2333321 12 288999999999999999765
Q ss_pred ----chh-hhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhcCC-
Q psy14582 1310 ----FAL-MSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNF- 1383 (1689)
Q Consensus 1310 ----~~l-~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~~~i~~~~i~~~~~~~~- 1383 (1689)
|.+ .+|+.+++++|.||++|+++||...||..++..++.|++||++++|++.+||+|||+|++..+|+|+++|+
T Consensus 600 i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L~~~g~~ 679 (715)
T 2va8_A 600 ILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNNGIK 679 (715)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHHTTCC
T ss_pred HHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCChhhcchhhCCCCCHHHHHHHHHcCCC
Confidence 777 78999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CchhhccCChhhhhhhhcCChhhHHHHH-HHHhCCcc
Q psy14582 1384 PWERLYDLGPNEIGELIRVPKLGKTIHK-YVHQFPKL 1419 (1689)
Q Consensus 1384 ~~~~l~dl~~~el~~ll~~~~~g~~i~~-~~~~~P~l 1419 (1689)
++.++. +++.+++.+++ ++.|+++++ +..++|.+
T Consensus 680 s~~~l~-~~~~~l~~~l~-~~~~~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 680 ELGDVV-MNPDKVKNLLG-QKLGEKVVQEAARLLNRF 714 (715)
T ss_dssp SHHHHH-HCHHHHHHHHC-HHHHHHHHHHHHHHHC--
T ss_pred CHHHHh-CCHHHHHHHhC-hhHHHHHHHHHHHhhccC
Confidence 788888 89999999998 889999887 67778865
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4e-76 Score=780.79 Aligned_cols=652 Identities=23% Similarity=0.350 Sum_probs=516.3
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.||+++++.+. ||++|+|+|.++++.++.+|+|+|++||||||||++|.+|+++.+... +.+++|++|
T Consensus 7 ~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~~l~i~P 76 (720)
T 2zj8_A 7 RVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----------GGKAVYIVP 76 (720)
T ss_dssp CSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----------CSEEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----------CCEEEEEcC
Confidence 58999999986 999999999999998555899999999999999999999999888642 358999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
+|+||.|++..+.+-. ..+.++..+.+. .
T Consensus 77 ~raLa~q~~~~~~~l~--------------------------~~g~~v~~~~G~-------------------------~ 105 (720)
T 2zj8_A 77 LKALAEEKFQEFQDWE--------------------------KIGLRVAMATGD-------------------------Y 105 (720)
T ss_dssp SGGGHHHHHHHTGGGG--------------------------GGTCCEEEECSC-------------------------S
T ss_pred cHHHHHHHHHHHHHHH--------------------------hcCCEEEEecCC-------------------------C
Confidence 9999999998773211 001122222111 1
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
+. .. . ..+.++|+|+| |+ +|+...+.
T Consensus 106 ~~------------~~----~-------------~~~~~~Iiv~T--------pe-~l~~~~~~---------------- 131 (720)
T 2zj8_A 106 DS------------KD----E-------------WLGKYDIIIAT--------AE-KFDSLLRH---------------- 131 (720)
T ss_dssp SC------------CC----G-------------GGGGCSEEEEC--------HH-HHHHHHHH----------------
T ss_pred Cc------------cc----c-------------ccCCCCEEEEC--------HH-HHHHHHHc----------------
Confidence 10 00 0 01278999999 99 77665440
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
+ ... +
T Consensus 132 ----------------------------------------------------------~--~~~---------l------ 136 (720)
T 2zj8_A 132 ----------------------------------------------------------G--SSW---------I------ 136 (720)
T ss_dssp ----------------------------------------------------------T--CTT---------G------
T ss_pred ----------------------------------------------------------C--hhh---------h------
Confidence 0 000 0
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT 863 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~ 863 (1689)
+.++++|+||+|++++ .||..++.++.++. .++|+|+||||++|++++++
T Consensus 137 ----------------------~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~-------~~~~ii~lSATl~n~~~~~~ 187 (720)
T 2zj8_A 137 ----------------------KDVKILVADEIHLIGSRDRGATLEVILAHML-------GKAQIIGLSATIGNPEELAE 187 (720)
T ss_dssp ----------------------GGEEEEEEETGGGGGCTTTHHHHHHHHHHHB-------TTBEEEEEECCCSCHHHHHH
T ss_pred ----------------------hcCCEEEEECCcccCCCcccHHHHHHHHHhh-------cCCeEEEEcCCcCCHHHHHH
Confidence 0188999999999998 89999999988763 37999999999999999999
Q ss_pred HhhcCCCccEEEecCCCcccceEEEEEeechhhHHH----HHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHH
Q psy14582 864 LLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALK----RFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIR 939 (1689)
Q Consensus 864 ~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~----~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~ 939 (1689)
|++.. .+...+||+|+...+..-....... ........+.+. ...++++||||+||+.|+.++..|.
T Consensus 188 ~l~~~------~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~ 258 (720)
T 2zj8_A 188 WLNAE------LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDA---IRKKKGALIFVNMRRKAERVALELS 258 (720)
T ss_dssp HTTEE------EEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHH---HHTTCCEEEECSCHHHHHHHHHHHH
T ss_pred HhCCc------ccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHH---HhCCCCEEEEecCHHHHHHHHHHHH
Confidence 99753 3678899999987653211000000 000111222221 2346899999999999999999998
Q ss_pred HhhhhccccchhhhcCchhHHHHHHhhh----hccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchh
Q psy14582 940 DMCLEKDTLGQFLREGSASMEVLRTEAD----QVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATL 1015 (1689)
Q Consensus 940 ~~~~~~~~l~~fl~~~~~~~e~l~~~~~----~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl 1015 (1689)
..... ++. ......+..... ...+..|+++++.|+++|||||++.+|..+++.|++|.++||
T Consensus 259 ~~~~~------~~~--~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vl------ 324 (720)
T 2zj8_A 259 KKVKS------LLT--KPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAV------ 324 (720)
T ss_dssp HHHGG------GSC--HHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEE------
T ss_pred HHHHH------hcC--hhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEE------
Confidence 75432 000 001111111111 123445888899999999999999999999999999999999
Q ss_pred ccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCC
Q psy14582 1016 AWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1016 ~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g 1095 (1689)
|||++++||||+|+.+|||.++++||+ . ++.++|+.+|+||+|||||+|
T Consensus 325 -----------------------------vaT~~l~~Gvdip~~~~VI~~~~~yd~-~-g~~~~s~~~~~Qr~GRaGR~g 373 (720)
T 2zj8_A 325 -----------------------------VATPTLSAGINTPAFRVIIRDIWRYSD-F-GMERIPIIEVHQMLGRAGRPK 373 (720)
T ss_dssp -----------------------------EECSTTGGGCCCCBSEEEECCSEECCS-S-SCEECCHHHHHHHHTTBCCTT
T ss_pred -----------------------------EECcHhhccCCCCceEEEEcCCeeecC-C-CCccCCHHHHHHHHhhcCCCC
Confidence 888999999999999999999999993 2 367899999999999999999
Q ss_pred CCCccEEEEEecCCcHHH-HHHHhh-CcCCccccccc--ccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCccc
Q psy14582 1096 YDTKGEGVLITNHSELQY-YLSLLN-HQLPVESQMIS--KLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLY 1171 (1689)
Q Consensus 1096 ~d~~G~~iil~~~~~~~~-y~~ll~-~~~pieS~l~~--~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Y 1171 (1689)
+|..|.|++++++.+... +.+++. .+.|++|++.. .+.++++++++.|++.+.+|+.+|+++||+|+|+..
T Consensus 374 ~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~----- 448 (720)
T 2zj8_A 374 YDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKD----- 448 (720)
T ss_dssp TCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSC-----
T ss_pred CCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccc-----
Confidence 999999999999887554 445664 67899999976 688999999999999999999999999999988621
Q ss_pred CCCcccccCChhhhhhhHHHHHHHHHHHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCC---CCHHH
Q psy14582 1172 GISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPT---LSEIE 1248 (1689)
Q Consensus 1172 g~~~~~~~~d~~l~~~~~~lv~~al~~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~---~~~~~ 1248 (1689)
..++.+.+++++..|.+.|+|..+. ++.+.+|++|+++|+||++|.|++.|...++.. .+..+
T Consensus 449 -------------~~~~~~~~~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (720)
T 2zj8_A 449 -------------TYSLEEKIRNILYFLLENEFIEISL-EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIG 514 (720)
T ss_dssp -------------CHHHHHHHHHHHHHHHHTTSEEECT-TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHH
T ss_pred -------------hHHHHHHHHHHHHHHHHCCCeeECC-CCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHH
Confidence 1245678999999999999998432 357999999999999999999999999998874 67889
Q ss_pred HHHHHhcCcccccCcCChHHHHHHHHHHhh------CCCCCCCCCCC-------hhHHHHHHHHHHHhccCCCC----ch
Q psy14582 1249 LFRVFSLSGEFRHITVREEEKLELQKLMER------APIPIKESTDE-------PSAKVNILLQAYISQLKLEG----FA 1311 (1689)
Q Consensus 1249 ll~i~s~s~Ef~~i~vR~~E~~~l~~l~~~------~p~~~~~~~~~-------~~~K~~~Llqa~is~~~l~~----~~ 1311 (1689)
+|.++|+++||+++++|++|+.+|.+++.+ .++|++....+ ++.|+++|||+|||+.+++. |.
T Consensus 515 ~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~ 594 (720)
T 2zj8_A 515 IFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYS 594 (720)
T ss_dssp HHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHhccCccccccccCHHHHHHHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 999999999999999999999999988633 45666543233 89999999999999999753 44
Q ss_pred h-hhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhcCC-Cchhhc
Q psy14582 1312 L-MSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNF-PWERLY 1389 (1689)
Q Consensus 1312 l-~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~~~i~~~~i~~~~~~~~-~~~~l~ 1389 (1689)
+ .+|+.+++++|.||++|+++||...||...+..+..|++||.+++|++.+||.|+|||+...+++|.+.|+ ++.++.
T Consensus 595 ~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G~~s~~dl~ 674 (720)
T 2zj8_A 595 VEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGFRSIEDIS 674 (720)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTTCCSHHHHH
T ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCccchhhhhCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 4 78999999999999999999999999987665555699999999999999999999999999999999998 888888
Q ss_pred cCChhhhhhhhcCChhhHHHHHHH
Q psy14582 1390 DLGPNEIGELIRVPKLGKTIHKYV 1413 (1689)
Q Consensus 1390 dl~~~el~~ll~~~~~g~~i~~~~ 1413 (1689)
++++.++..+ +++|+++++.+
T Consensus 675 ~~~~~~l~~~---~~~~~~i~~~~ 695 (720)
T 2zj8_A 675 QARPEELLKI---EGIGVKTVEAI 695 (720)
T ss_dssp TCCHHHHHTS---TTCCHHHHHHH
T ss_pred hCCHHHHHHh---HhHHHHHHHHH
Confidence 8898888877 77887766554
No 6
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=100.00 E-value=4.6e-64 Score=603.55 Aligned_cols=326 Identities=57% Similarity=0.926 Sum_probs=273.9
Q ss_pred CCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCChHHHHHHHHHHhhCCCCCC-CCCCC
Q psy14582 1211 SGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIK-ESTDE 1289 (1689)
Q Consensus 1211 ~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~~E~~~l~~l~~~~p~~~~-~~~~~ 1289 (1689)
.|.+.||++|||||+|||+|.||+.|+..+++.++..++|+++|.|.||+++++|++|+.+|.+|.+++|+|++ ..+++
T Consensus 10 ~g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~ 89 (339)
T 2q0z_X 10 HMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFND 89 (339)
T ss_dssp ---------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTC
T ss_pred CceeccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHhCCCccccCCCCC
Confidence 47799999999999999999999999999999999999999999999999999999999999999999999996 47899
Q ss_pred hhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccCCC
Q psy14582 1290 PSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRK 1369 (1689)
Q Consensus 1290 ~~~K~~~Llqa~is~~~l~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~~~ 1369 (1689)
|+.|+|+||||||||++++ .+|.+|+.+|+++|.||++|++||++.+||+
T Consensus 90 ~~~K~~lLLqa~isr~~l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g~~----------------------------- 139 (339)
T 2q0z_X 90 PHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWL----------------------------- 139 (339)
T ss_dssp HHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBH-----------------------------
T ss_pred HHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-----------------------------
Confidence 9999999999999999998 6999999999999999999999887766654
Q ss_pred CCHHHHHHHHhcCCCchhhccCChhhhhhhhcCChhhHHHHHHHHhCCcceEEEEeeccccceEEEEEeecCCCccCccc
Q psy14582 1370 IPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKL 1449 (1689)
Q Consensus 1370 i~~~~i~~~~~~~~~~~~l~dl~~~el~~ll~~~~~g~~i~~~~~~~P~l~l~~~~~pi~~~~~~~~~~i~~~~~~~~~~ 1449 (1689)
T Consensus 140 -------------------------------------------------------------------------------- 139 (339)
T 2q0z_X 140 -------------------------------------------------------------------------------- 139 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEeccchhhHHHHhhhhhhhccCCCchhHHHHHHHHHHhhhhccCCCcccccCCCCCHHHHHhhhccCCCC
Q psy14582 1450 HGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVET 1529 (1689)
Q Consensus 1450 ~~~~e~~wi~v~d~~~~~~rll~a~vdi~s~~gwL~~~l~~m~l~QmivQa~w~~~s~LlQlPh~~~~~~~~~~~~~v~~ 1529 (1689)
++++++|+|+|||+||+|+.++||+|||||+.+.++++.++++.+
T Consensus 140 -----------------------------------~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~~~~~~~l~~~~i~s 184 (339)
T 2q0z_X 140 -----------------------------------SPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVES 184 (339)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHTCCTTSCGGGGSTTCCHHHHHHHHHTTCCS
T ss_pred -----------------------------------HHHHHHHHHHHHHHHhcCCCCCceecCCCCCHHHHHHHHhcCCCC
Confidence 457888888899999999888999999999999999998899999
Q ss_pred HHHHhcCCHHHHHHhhcCCHHHHHHHHHHHhcCCcEEEEEEEeccccccCCCeEEEEEEEEecCCCCCccccCCCCCCCc
Q psy14582 1530 VFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKRE 1609 (1689)
Q Consensus 1530 v~dl~~~~~~~r~~ll~l~~~q~~~v~~~~~~~P~iei~~~v~~~~~i~~g~~~~l~v~l~R~~~~~~~v~aP~fP~~K~ 1609 (1689)
+++|++++++++..+|++++.+++++.++|++||+|+|+++|.+++.|++|+.++|+|+|+|+++..++|||||||+.|.
T Consensus 185 ~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~~~~~~~v~aP~fp~~k~ 264 (339)
T 2q0z_X 185 VFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKRE 264 (339)
T ss_dssp HHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSEEEEEEEEEECSSCCSSCCCTTCSSCCC
T ss_pred HHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEEEEEEccCccccCCCcEEEEEEEEECCCCCCceeCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999877778999999999999
Q ss_pred ccEEEEEEeCCCCeEEEEEeeccCcceEEEEEeeCCCCceEEEEEEEEcCCCCCCCceEEEEEEeecCCCCC
Q psy14582 1610 EGWWVVIGDPKTNSLLSIKRLTLQQKAKIKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFSIDVSEYYSGG 1681 (1689)
Q Consensus 1610 e~Wwvvvgd~~~~~l~~ikrv~~~~~~~~~l~f~~p~~G~~~~~l~~~sDsY~G~D~e~~~~l~V~~~~~~~ 1681 (1689)
|+||++|||.++|+|++++|+++.+..+++++|.+|.||.|+|++++|||||+|||++++|+++|.+++.++
T Consensus 265 e~wwi~v~d~~~~~ll~~~r~~l~~~~~~~l~f~~P~~g~~~~~v~~vSD~ylG~D~~~~i~~~v~~~~~~~ 336 (339)
T 2q0z_X 265 EGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDS 336 (339)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCSSEEEEEEEEECCSSEEEEEEEEEEESSCSSCCEEEEEEEEEBCC----
T ss_pred CcEEEEEEECCCCEEEEEEEEecccceEEEEEEECCCCCCeeEEEEEEcccccCcceEEEEEEEEecCccCc
Confidence 999999999999999999999999888999999999999999999999999999999999999999775433
No 7
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=100.00 E-value=2.2e-63 Score=595.50 Aligned_cols=320 Identities=36% Similarity=0.625 Sum_probs=301.0
Q ss_pred CCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCChHHHHHHHHHHhhCCCCC--CCCC
Q psy14582 1210 KSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPI--KEST 1287 (1689)
Q Consensus 1210 ~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~~E~~~l~~l~~~~p~~~--~~~~ 1287 (1689)
+++.+.||++|+|||+|||+|.||+.|++.+++.++..++|+++|.|+||+++++|++|+.+|.+|..++|+|+ ++++
T Consensus 5 ~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~ 84 (328)
T 3im1_A 5 ATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSS 84 (328)
T ss_dssp CCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCTTSCS
T ss_pred CCCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHhCCCcccccCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999986 5678
Q ss_pred CChhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCccccC
Q psy14582 1288 DEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQF 1367 (1689)
Q Consensus 1288 ~~~~~K~~~Llqa~is~~~l~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~pLrQ~ 1367 (1689)
++|+.|+|+||||||||++++. +|.+|+.+|+++|.||++|++||++.+
T Consensus 85 ~~~~~K~~lLLqa~isr~~l~~-~l~~D~~~V~~~a~rLl~al~di~~~~------------------------------ 133 (328)
T 3im1_A 85 GSVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSAN------------------------------ 133 (328)
T ss_dssp SSHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHT------------------------------
T ss_pred CCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcC------------------------------
Confidence 8999999999999999999997 999999999999999999888876644
Q ss_pred CCCCHHHHHHHHhcCCCchhhccCChhhhhhhhcCChhhHHHHHHHHhCCcceEEEEeeccccceEEEEEeecCCCccCc
Q psy14582 1368 RKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDE 1447 (1689)
Q Consensus 1368 ~~i~~~~i~~~~~~~~~~~~l~dl~~~el~~ll~~~~~g~~i~~~~~~~P~l~l~~~~~pi~~~~~~~~~~i~~~~~~~~ 1447 (1689)
T Consensus 134 -------------------------------------------------------------------------------- 133 (328)
T 3im1_A 134 -------------------------------------------------------------------------------- 133 (328)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEEEeccchhhHHHHhhhhhhhccCCCchhHHHHHHHHHHhhhhccCCCcccccCCCCCHHHHHhhhccCC
Q psy14582 1448 KLHGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGV 1527 (1689)
Q Consensus 1448 ~~~~~~e~~wi~v~d~~~~~~rll~a~vdi~s~~gwL~~~l~~m~l~QmivQa~w~~~s~LlQlPh~~~~~~~~~~~~~v 1527 (1689)
||++ ++++|+|+|||+||+|+.++||+|||||+.+.+++|.++++
T Consensus 134 ----------------------------------g~~~-~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~~~~~~~l~~~~i 178 (328)
T 3im1_A 134 ----------------------------------GYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINV 178 (328)
T ss_dssp ----------------------------------TBTT-HHHHHHHHHHHHHTSCTTSCGGGGSTTCCHHHHHHHHHTTC
T ss_pred ----------------------------------CcHH-HHHHHHHHHHHHhhcCCCCCceeCCCCCCHHHHHHHHhCCC
Confidence 4566 78889999999999999999999999999999999999999
Q ss_pred CCHHHHhcCCHHHHHHhhcCCHHHHHHHHHHHhcCCcEEEEEEEeccccccCCCeEEEEEEEEecCCC-CCccccCCCCC
Q psy14582 1528 ETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVVVNLDREDEV-TGPVIAPFYPQ 1606 (1689)
Q Consensus 1528 ~~v~dl~~~~~~~r~~ll~l~~~q~~~v~~~~~~~P~iei~~~v~~~~~i~~g~~~~l~v~l~R~~~~-~~~v~aP~fP~ 1606 (1689)
+++++|++++++++.+++++++.+.+++.++|++||+|+|+++|.+++.|++|+.++|+|+|+|+.+. .+.|||||||+
T Consensus 179 ~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~~~~~~~~~~ap~fp~ 258 (328)
T 3im1_A 179 ETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRDVEPENLQVTSEKYPF 258 (328)
T ss_dssp CSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTSEEEEEEEEEESSCCSCCBCCCSSCCB
T ss_pred CCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEEEEecCCCcccCCCeEEEEEEEEECCCCCCCcEECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998643 55899999999
Q ss_pred CCcccEEEEEEeCCCCeEEEEEeeccCc-ceEEEEEeeCCCCceEEEEEEEEcCCCCCCCceEEEEEEee
Q psy14582 1607 KREEGWWVVIGDPKTNSLLSIKRLTLQQ-KAKIKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFSIDVS 1675 (1689)
Q Consensus 1607 ~K~e~Wwvvvgd~~~~~l~~ikrv~~~~-~~~~~l~f~~p~~G~~~~~l~~~sDsY~G~D~e~~~~l~V~ 1675 (1689)
.|.|+||++|||.++|+|+++||+++.+ ..+++++|.+|.+|.|+|++|||||||+|||++++|+++|.
T Consensus 259 ~k~e~ww~~v~d~~~~~l~~~kr~~~~~~~~~~~~~f~~p~~g~~~~~v~~vsD~ylG~d~~~~~~l~V~ 328 (328)
T 3im1_A 259 DKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPTSGKHNLTIWCVCDSYLDADKELSFEINVK 328 (328)
T ss_dssp CCBCCEEEEEEEGGGTEEEEEEEECCCSSEEEEEEEEECCCSEEEEEEEEEEESSCSSCCEEEEEEEEEC
T ss_pred CccCCEEEEEEECCCCeEEEEeeecccccceEEEEEEEcCCCCcEEEEEEEEecCCcceeEEEEEEEEeC
Confidence 9999999999999999999999999975 67999999999889999999999999999999999999984
No 8
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-38 Score=423.61 Aligned_cols=274 Identities=24% Similarity=0.348 Sum_probs=196.1
Q ss_pred hhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
++++|+||+|.+.+ .||..++.++.. ++..+++|+||||++|..+++.|+..........+...+||+|+++
T Consensus 193 l~lVViDEaH~l~d~~rg~~~e~il~~-------l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~ 265 (1010)
T 2xgj_A 193 VAWVIFDEVHYMRDKERGVVWEETIIL-------LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQH 265 (1010)
T ss_dssp EEEEEEETGGGGGCTTTHHHHHHHHHH-------SCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEE
T ss_pred CCEEEEechhhhcccchhHHHHHHHHh-------cCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceE
Confidence 88999999999988 699999887653 4678999999999999999999997533334666777899999988
Q ss_pred EEEeec---------hhh------HHHHHHH---------------------------------hhHHHHHHHHHHhCCC
Q psy14582 888 QYIGVT---------EKK------ALKRFQV---------------------------------MNDIVYEKVMEHAGRN 919 (1689)
Q Consensus 888 ~~~~~~---------~~~------~~~~~~~---------------------------------m~~~~~~~i~~~~~~~ 919 (1689)
++.... ... ....+.. ....+...+ ......
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l-~~~~~~ 344 (1010)
T 2xgj_A 266 YLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMI-WKKKYN 344 (1010)
T ss_dssp EEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHH-HHHTCC
T ss_pred EEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHH-HhcCCC
Confidence 766421 000 0000000 000111111 223456
Q ss_pred eEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhc--------cchhhhcccCCceeEeccCCCH
Q psy14582 920 QLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQV--------KNGELRDLLPYGFAIHHAGMTR 991 (1689)
Q Consensus 920 ~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~--------~~~~L~~~l~~Gi~~hHagl~~ 991 (1689)
++||||+||+.|..++..|...+........ .....+......+ ....+..++..||++|||||++
T Consensus 345 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~------~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~ 418 (1010)
T 2xgj_A 345 PVIVFSFSKRDCEELALKMSKLDFNSDDEKE------ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLP 418 (1010)
T ss_dssp SEEEEESSHHHHHHHHHTTTTSCCCCHHHHH------HHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCH
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCChHHHH------HHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCH
Confidence 9999999999999999988653221110000 0000111111111 1134566788999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecC
Q psy14582 992 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 1071 (1689)
Q Consensus 992 ~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~ 1071 (1689)
.+|..++++|++|.++|| |||+++++|+|+|+.+|||.++..||+
T Consensus 419 ~eR~~ve~~F~~G~ikVL-----------------------------------VAT~~la~GIDiP~~~vVI~~~~kfd~ 463 (1010)
T 2xgj_A 419 ILKEVIEILFQEGFLKVL-----------------------------------FATETFSIGLNMPAKTVVFTSVRKWDG 463 (1010)
T ss_dssp HHHHHHHHHHHTTCCSEE-----------------------------------EEEGGGGGSTTCCBSEEEESCSEEECS
T ss_pred HHHHHHHHHHhcCCCcEE-----------------------------------EEehHhhccCCCCCceEEEeCCcccCC
Confidence 999999999999999999 888888888888888888999999997
Q ss_pred CCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCC-cHHHHHHHhh-CcCCcccccccccc
Q psy14582 1072 EKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS-ELQYYLSLLN-HQLPVESQMISKLP 1133 (1689)
Q Consensus 1072 ~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~-~~~~y~~ll~-~~~pieS~l~~~l~ 1133 (1689)
.. +.+.++.+|+||+|||||.|.|..|.++++++.. +...+.+++. .+.|++|+|.....
T Consensus 464 ~~--~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~~ 525 (1010)
T 2xgj_A 464 QQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYN 525 (1010)
T ss_dssp SC--EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCHH
T ss_pred cC--CccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCcHH
Confidence 64 3568999999999999999988899999999875 5666666655 55689999875433
No 9
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.5e-37 Score=396.24 Aligned_cols=394 Identities=19% Similarity=0.226 Sum_probs=262.3
Q ss_pred ecCCCCCCCCCCCCCccCCCCccHHHHHhcc--CCCCCCHHHHHHHHHHHh-cCCcEEEEccCCCChHHHHHHHHHHHHh
Q psy14582 447 HVPALKPKPMGPDETLVPIDKLPRYVQHAFE--DFKTLNRIQSRLCKSALE-SDENLLLCAPTGAGKTNVALLCMLQEIG 523 (1689)
Q Consensus 447 ~vp~~~~~p~~~~~~l~~~~~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~-~g~nvLv~APTGSGKT~a~lLpiL~~l~ 523 (1689)
.+|...+.+..++..+.....|++++.+++. ||.+|||+|.++++.++. .++|+|++||||||||++|++|+++.+.
T Consensus 58 ~~~~~~~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~ 137 (563)
T 3i5x_A 58 HVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLI 137 (563)
T ss_dssp EECCCSSCCCCCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHH
Confidence 3443333333344455455568999998886 999999999999999885 3789999999999999999999999998
Q ss_pred hcccCCCCCCCCCeEEEEEccchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHH
Q psy14582 524 KHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYK 603 (1689)
Q Consensus 524 ~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~ 603 (1689)
..... ...+.++|||+|||+||.|++..+.+-.-+. .......+..+.+....
T Consensus 138 ~~~~~----~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~---------------------~~~~~~~~~~~~g~~~~-- 190 (563)
T 3i5x_A 138 NTKFD----SQYMVKAVIVAPTRDLALQIEAEVKKIHDMN---------------------YGLKKYACVSLVGGTDF-- 190 (563)
T ss_dssp HTTTS----STTSCCEEEECSSHHHHHHHHHHHHHHHHHC---------------------GGGTTSCEEEECTTSCH--
T ss_pred hcccc----ccCCeeEEEEcCcHHHHHHHHHHHHHHHhhc---------------------cccCceeEEEEECCcCH--
Confidence 64321 1245689999999999999986664311000 00000111111000000
Q ss_pred HHHHHHhhCCCCCceeecCCCccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCcccc
Q psy14582 604 DVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWD 683 (1689)
Q Consensus 604 ~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd 683 (1689)
........ ...++|+|+| |+ .+.
T Consensus 191 -----------------------------------~~~~~~~~-------------~~~~~Iiv~T--------p~-~l~ 213 (563)
T 3i5x_A 191 -----------------------------------RAAMNKMN-------------KLRPNIVIAT--------PG-RLI 213 (563)
T ss_dssp -----------------------------------HHHHHHHH-------------HHCCSEEEEC--------HH-HHH
T ss_pred -----------------------------------HHHHHHHh-------------cCCCCEEEEC--------cH-HHH
Confidence 00011000 1167999999 98 332
Q ss_pred ccccCCCcceeEEEEeCCCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCC
Q psy14582 684 EKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRG 763 (1689)
Q Consensus 684 ~~~~g~~e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTG 763 (1689)
....
T Consensus 214 ~~l~---------------------------------------------------------------------------- 217 (563)
T 3i5x_A 214 DVLE---------------------------------------------------------------------------- 217 (563)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 2211
Q ss_pred CchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhc
Q psy14582 764 AGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEAT 842 (1689)
Q Consensus 764 sGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~ 842 (1689)
+... ..+ . .++++|+||+|.+.+ .+++.++.++..+.......
T Consensus 218 --~~~~------~~~-~---------------------------~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~ 261 (563)
T 3i5x_A 218 --KYSN------KFF-R---------------------------FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 261 (563)
T ss_dssp --HHHH------HHC-T---------------------------TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSC
T ss_pred --hccc------ccc-c---------------------------cceEEEEeCHHHHhccchHHHHHHHHHhhhhccccC
Confidence 0000 000 0 178999999999887 67888888877765433344
Q ss_pred cccceEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcc---cceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCC
Q psy14582 843 QEDVRLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRP---VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGR 918 (1689)
Q Consensus 843 ~~~~riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~Rp---vpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~ 918 (1689)
...+|+++||||+++ ..+++.++...+....+......++ ..+.+.+....... .....+...+...+.....+
T Consensus 262 ~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 339 (563)
T 3i5x_A 262 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFA--NSIFAAVEHIKKQIKERDSN 339 (563)
T ss_dssp TTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTT--HHHHHHHHHHHHHHHHTTTC
T ss_pred ccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhH--hhHHHHHHHHHHHHhhcCCC
Confidence 557899999999996 4666666655432211111111122 22444444333211 11222233344444444567
Q ss_pred CeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHH
Q psy14582 919 NQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVE 998 (1689)
Q Consensus 919 ~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve 998 (1689)
.++||||+|++.|..++..|..... -...++.|||+|++.+|..++
T Consensus 340 ~~~iVF~~s~~~~~~l~~~L~~~~~----------------------------------~~~~v~~~h~~~~~~~R~~~~ 385 (563)
T 3i5x_A 340 YKAIIFAPTVKFTSFLCSILKNEFK----------------------------------KDLPILEFHGKITQNKRTSLV 385 (563)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHT----------------------------------TTSCEEEESTTSCHHHHHHHH
T ss_pred CcEEEEcCcHHHHHHHHHHHHHhcc----------------------------------CCceEEEecCCCCHHHHHHHH
Confidence 8999999999999999998876321 024577899999999999999
Q ss_pred HHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCccee
Q psy14582 999 DLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVE 1078 (1689)
Q Consensus 999 ~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~ 1078 (1689)
+.|++|.++|||||+++++|||+|+|++| | .+++|
T Consensus 386 ~~f~~g~~~vLvaT~~~~~GiDip~v~~V-----------------I-------~~~~p--------------------- 420 (563)
T 3i5x_A 386 KRFKKDESGILVCTDVGARGMDFPNVHEV-----------------L-------QIGVP--------------------- 420 (563)
T ss_dssp HHHHHCSSEEEEECGGGTSSCCCTTCCEE-----------------E-------EESCC---------------------
T ss_pred HHHhcCCCCEEEEcchhhcCCCcccCCEE-----------------E-------EECCC---------------------
Confidence 99999999999999999999999999998 3 22233
Q ss_pred cCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhh
Q psy14582 1079 LGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLN 1119 (1689)
Q Consensus 1079 ~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 1119 (1689)
.++.+|+||+|||||.| ..|.+++++...+..++..+..
T Consensus 421 ~s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l~~ 459 (563)
T 3i5x_A 421 SELANYIHRIGRTARSG--KEGSSVLFICKDELPFVRELED 459 (563)
T ss_dssp SSTTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHHHH
T ss_pred CchhhhhhhcCccccCC--CCceEEEEEchhHHHHHHHHHH
Confidence 35789999999999998 7899999999988887777654
No 10
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-38 Score=427.45 Aligned_cols=281 Identities=25% Similarity=0.358 Sum_probs=192.8
Q ss_pred hhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
+++||+||+|.+.+ .+|..++.++.. ++..+|+|+||||+||..+++.|++.........+...+||+|+++
T Consensus 291 l~lVVIDEaH~l~d~~rg~~~e~ii~~-------l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~ 363 (1108)
T 3l9o_A 291 VAWVIFDEVHYMRDKERGVVWEETIIL-------LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQH 363 (1108)
T ss_dssp EEEEEEETGGGTTSHHHHHHHHHHHHH-------SCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEE
T ss_pred CCEEEEhhhhhccccchHHHHHHHHHh-------cCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceE
Confidence 89999999999988 789988887643 4678999999999999999999998755555777888899999987
Q ss_pred EEEeech---------hh------HHHHHHHh------------------------------hHHHHHHH--HHHhCCCe
Q psy14582 888 QYIGVTE---------KK------ALKRFQVM------------------------------NDIVYEKV--MEHAGRNQ 920 (1689)
Q Consensus 888 ~~~~~~~---------~~------~~~~~~~m------------------------------~~~~~~~i--~~~~~~~~ 920 (1689)
++..... .. ....+..+ ...++..+ +.....++
T Consensus 364 ~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~ 443 (1108)
T 3l9o_A 364 YLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNP 443 (1108)
T ss_dssp EEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCC
T ss_pred EEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCC
Confidence 6643211 00 00000000 11111111 12234579
Q ss_pred EEEEeCChHHHHHHHHHHHHhhhhccc----cchhhhcCchhHHHHHHhhh-hccchhhhcccCCceeEeccCCCHHHHH
Q psy14582 921 LLVFVHSRKETGKTARAIRDMCLEKDT----LGQFLREGSASMEVLRTEAD-QVKNGELRDLLPYGFAIHHAGMTRVDRT 995 (1689)
Q Consensus 921 vLVFv~srk~~~~~a~~L~~~~~~~~~----l~~fl~~~~~~~e~l~~~~~-~~~~~~L~~~l~~Gi~~hHagl~~~dR~ 995 (1689)
+||||++++.|..++..|...+..... +..++.... ..+..... ......+..++..||++|||||++.+|.
T Consensus 444 vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~---~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~ 520 (1108)
T 3l9o_A 444 VIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAI---ALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 520 (1108)
T ss_dssp EEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSC---THHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHH
T ss_pred EEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH---hhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHH
Confidence 999999999999999998764433211 111111100 00110000 0112346778889999999999999999
Q ss_pred HHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCc
Q psy14582 996 LVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGR 1075 (1689)
Q Consensus 996 ~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~ 1075 (1689)
.+++.|++|.++|||||+++++|||+| +.++||.....||+..+
T Consensus 521 ~v~~~F~~G~ikVLVAT~vla~GIDiP-----------------------------------~v~~VI~~~~~~d~~~~- 564 (1108)
T 3l9o_A 521 VIEILFQEGFLKVLFATETFSIGLNMP-----------------------------------AKTVVFTSVRKWDGQQF- 564 (1108)
T ss_dssp HHHHHHHHTCCCEEEEESCCCSCCCC-------------------------------------CEEEESCSEEESSSCE-
T ss_pred HHHHHHhCCCCeEEEECcHHhcCCCCC-----------------------------------CceEEEecCcccCcccc-
Confidence 999999999999995555555555555 44555666677887654
Q ss_pred ceecCHHHHHHHhcccCCCCCCCccEEEEEecCC-cHHHHHHHhh-CcCCcccccccccccch
Q psy14582 1076 WVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS-ELQYYLSLLN-HQLPVESQMISKLPDML 1136 (1689)
Q Consensus 1076 ~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~-~~~~y~~ll~-~~~pieS~l~~~l~d~l 1136 (1689)
.++|+.+|+||+|||||.|.|..|.++++++.. ....+..++. .+.|++|+|.......+
T Consensus 565 -r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~il 626 (1108)
T 3l9o_A 565 -RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMIL 626 (1108)
T ss_dssp -EECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_pred -ccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHHH
Confidence 357999999999999999999999999999875 4556666666 46789999876443333
No 11
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.1e-37 Score=384.87 Aligned_cols=350 Identities=17% Similarity=0.211 Sum_probs=237.3
Q ss_pred CCCCCCCCCccCCCCccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCC
Q psy14582 453 PKPMGPDETLVPIDKLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADG 530 (1689)
Q Consensus 453 ~~p~~~~~~l~~~~~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g 530 (1689)
|.|..++..+ .|++++.+++. ||++|||+|.+++|.++ +|+|++++||||||||++|++|++..+......
T Consensus 52 p~~~~~f~~~----~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~-~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-- 124 (434)
T 2db3_A 52 PQPIQHFTSA----DLRDIIIDNVNKSGYKIPTPIQKCSIPVIS-SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-- 124 (434)
T ss_dssp CCCCCCGGGS----CCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC--
T ss_pred CCCcCChhhc----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEECCCCCCchHHHHHHHHHHHHhcccc--
Confidence 3445555544 68999998886 99999999999999988 899999999999999999999999998764221
Q ss_pred CCCCCCeEEEEEccchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHh
Q psy14582 531 TINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLR 610 (1689)
Q Consensus 531 ~~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~ 610 (1689)
....+.++||++|||+||.|++..+.+-.. ....++..+.
T Consensus 125 -~~~~~~~~lil~PtreLa~Q~~~~~~~~~~-------------------------~~~~~~~~~~-------------- 164 (434)
T 2db3_A 125 -LELGRPQVVIVSPTRELAIQIFNEARKFAF-------------------------ESYLKIGIVY-------------- 164 (434)
T ss_dssp -CCTTCCSEEEECSSHHHHHHHHHHHHHHTT-------------------------TSSCCCCEEC--------------
T ss_pred -cccCCccEEEEecCHHHHHHHHHHHHHHhc-------------------------cCCcEEEEEE--------------
Confidence 123467899999999999999866533110 0000100000
Q ss_pred hCCCCCceeecCCCccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCC
Q psy14582 611 IKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGS 690 (1689)
Q Consensus 611 ~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~ 690 (1689)
+ ......+. ......++|+|+| |+..++...++.
T Consensus 165 ----------g-----------------g~~~~~~~----------~~l~~~~~Ivv~T--------p~~l~~~l~~~~- 198 (434)
T 2db3_A 165 ----------G-----------------GTSFRHQN----------ECITRGCHVVIAT--------PGRLLDFVDRTF- 198 (434)
T ss_dssp ----------T-----------------TSCHHHHH----------HHHTTCCSEEEEC--------HHHHHHHHHTTS-
T ss_pred ----------C-----------------CCCHHHHH----------HHhhcCCCEEEEC--------hHHHHHHHHhCC-
Confidence 0 00000000 0011267999999 983322222100
Q ss_pred cceeEEEEeCCCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHH
Q psy14582 691 EGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVA 770 (1689)
Q Consensus 691 e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~ 770 (1689)
..
T Consensus 199 ----------------------------------------------------------------------------~~-- 200 (434)
T 2db3_A 199 ----------------------------------------------------------------------------IT-- 200 (434)
T ss_dssp ----------------------------------------------------------------------------CC--
T ss_pred ----------------------------------------------------------------------------cc--
Confidence 00
Q ss_pred HHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEE
Q psy14582 771 LLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLV 849 (1689)
Q Consensus 771 lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV 849 (1689)
+ ..++++|+||+|.+.+ .+.+.+..++... ...+..+++
T Consensus 201 -------l----------------------------~~~~~lVlDEah~~~~~gf~~~~~~i~~~~-----~~~~~~q~l 240 (434)
T 2db3_A 201 -------F----------------------------EDTRFVVLDEADRMLDMGFSEDMRRIMTHV-----TMRPEHQTL 240 (434)
T ss_dssp -------C----------------------------TTCCEEEEETHHHHTSTTTHHHHHHHHHCT-----TSCSSCEEE
T ss_pred -------c----------------------------ccCCeEEEccHhhhhccCcHHHHHHHHHhc-----CCCCCceEE
Confidence 0 0078999999999887 4555555544321 125678999
Q ss_pred EEecCCCC-HHHHHHHhhcCCCccEEEecC--CCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeC
Q psy14582 850 GLSATLPN-YKDVATLLRIKPETGLFYFDN--SFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVH 926 (1689)
Q Consensus 850 ~lSATl~n-~~dva~~L~~~~~~~~~~f~~--~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~ 926 (1689)
++|||+|+ ...++..+..+ ..+.... ......+.+.+..+....+... +.+.+ ... ..++||||+
T Consensus 241 ~~SAT~~~~~~~~~~~~l~~---~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~-------l~~~l-~~~-~~~~lVF~~ 308 (434)
T 2db3_A 241 MFSATFPEEIQRMAGEFLKN---YVFVAIGIVGGACSDVKQTIYEVNKYAKRSK-------LIEIL-SEQ-ADGTIVFVE 308 (434)
T ss_dssp EEESCCCHHHHHHHHTTCSS---CEEEEESSTTCCCTTEEEEEEECCGGGHHHH-------HHHHH-HHC-CTTEEEECS
T ss_pred EEeccCCHHHHHHHHHhccC---CEEEEeccccccccccceEEEEeCcHHHHHH-------HHHHH-HhC-CCCEEEEEe
Confidence 99999993 34444332222 2222211 1122346666666654433221 22222 222 234999999
Q ss_pred ChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCe
Q psy14582 927 SRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHI 1006 (1689)
Q Consensus 927 srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i 1006 (1689)
+++.|..++..|... ...+..+||+|++.+|..+++.|++|..
T Consensus 309 t~~~a~~l~~~L~~~-------------------------------------~~~~~~lhg~~~~~~R~~~l~~F~~g~~ 351 (434)
T 2db3_A 309 TKRGADFLASFLSEK-------------------------------------EFPTTSIHGDRLQSQREQALRDFKNGSM 351 (434)
T ss_dssp SHHHHHHHHHHHHHT-------------------------------------TCCEEEESTTSCHHHHHHHHHHHHTSSC
T ss_pred CcHHHHHHHHHHHhC-------------------------------------CCCEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 999999999988752 2346677999999999999999999999
Q ss_pred EEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHH
Q psy14582 1007 QVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQ 1086 (1689)
Q Consensus 1007 ~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQ 1086 (1689)
+|||||++++||+|+|+|++| | .+++| .++.+|+|
T Consensus 352 ~vLvaT~v~~rGlDi~~v~~V-----------------I-------~~d~p---------------------~~~~~y~q 386 (434)
T 2db3_A 352 KVLIATSVASRGLDIKNIKHV-----------------I-------NYDMP---------------------SKIDDYVH 386 (434)
T ss_dssp SEEEECGGGTSSCCCTTCCEE-----------------E-------ESSCC---------------------SSHHHHHH
T ss_pred cEEEEchhhhCCCCcccCCEE-----------------E-------EECCC---------------------CCHHHHHH
Confidence 999999999999999999999 3 34444 35899999
Q ss_pred HhcccCCCCCCCccEEEEEecCC
Q psy14582 1087 MLGRAGRPQYDTKGEGVLITNHS 1109 (1689)
Q Consensus 1087 m~GRAGR~g~d~~G~~iil~~~~ 1109 (1689)
|+|||||.| ..|.+++++++.
T Consensus 387 riGR~gR~g--~~G~a~~~~~~~ 407 (434)
T 2db3_A 387 RIGRTGRVG--NNGRATSFFDPE 407 (434)
T ss_dssp HHTTSSCTT--CCEEEEEEECTT
T ss_pred HhcccccCC--CCCEEEEEEecc
Confidence 999999998 789999999853
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.9e-36 Score=385.18 Aligned_cols=395 Identities=19% Similarity=0.235 Sum_probs=260.9
Q ss_pred eEecCCCCCCCCCCCCCccCCCCccHHHHHhcc--CCCCCCHHHHHHHHHHHh-cCCcEEEEccCCCChHHHHHHHHHHH
Q psy14582 445 EVHVPALKPKPMGPDETLVPIDKLPRYVQHAFE--DFKTLNRIQSRLCKSALE-SDENLLLCAPTGAGKTNVALLCMLQE 521 (1689)
Q Consensus 445 ev~vp~~~~~p~~~~~~l~~~~~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~-~g~nvLv~APTGSGKT~a~lLpiL~~ 521 (1689)
.+++|...+.+..++..+.....|++++.+++. ||.+|+|+|.++++.++. .|+|+|++||||||||++|++|+++.
T Consensus 5 v~~~~~~~~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~ 84 (579)
T 3sqw_A 5 LIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQH 84 (579)
T ss_dssp EEEECCCSSCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEecCccCCCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHH
Confidence 455666544444455555555568999999886 999999999999999885 37899999999999999999999999
Q ss_pred HhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCC
Q psy14582 522 IGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN 601 (1689)
Q Consensus 522 l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~ 601 (1689)
+...... ...+.++|||+|||+||.|+...+.+-.-+. ...+...+..+.+....
T Consensus 85 l~~~~~~----~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~---------------------~~~~~~~~~~~~gg~~~ 139 (579)
T 3sqw_A 85 LINTKFD----SQYMVKAVIVAPTRDLALQIEAEVKKIHDMN---------------------YGLKKYACVSLVGGTDF 139 (579)
T ss_dssp HHHTTTS----STTSCCEEEECSSHHHHHHHHHHHHHHHHHC---------------------GGGTTSCEEEECTTSCH
T ss_pred HHhcccc----ccCCCeEEEEcchHHHHHHHHHHHHHHHhhc---------------------ccccceEEEEEECCccH
Confidence 8764321 1245789999999999999986654311000 00000111111000000
Q ss_pred HHHHHHHHhhCCCCCceeecCCCccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCcc
Q psy14582 602 YKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQ 681 (1689)
Q Consensus 602 ~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~ 681 (1689)
........ ...++|+|+| |+ .
T Consensus 140 -------------------------------------~~~~~~l~-------------~~~~~IlV~T--------p~-~ 160 (579)
T 3sqw_A 140 -------------------------------------RAAMNKMN-------------KLRPNIVIAT--------PG-R 160 (579)
T ss_dssp -------------------------------------HHHHHHHH-------------HHCCSEEEEC--------HH-H
T ss_pred -------------------------------------HHHHHHHh-------------cCCCCEEEEC--------HH-H
Confidence 00011000 1168899999 98 2
Q ss_pred ccccccCCCcceeEEEEeCCCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeec
Q psy14582 682 WDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLP 761 (1689)
Q Consensus 682 wd~~~~g~~e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aP 761 (1689)
+.....
T Consensus 161 l~~~l~-------------------------------------------------------------------------- 166 (579)
T 3sqw_A 161 LIDVLE-------------------------------------------------------------------------- 166 (579)
T ss_dssp HHHHHH--------------------------------------------------------------------------
T ss_pred HHHHHH--------------------------------------------------------------------------
Confidence 211111
Q ss_pred CCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHH
Q psy14582 762 RGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIE 840 (1689)
Q Consensus 762 TGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~ 840 (1689)
..-..... .++++|+||+|.+.+ .+.+.++.++..+.....
T Consensus 167 -----------~~~~~~~~---------------------------~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~ 208 (579)
T 3sqw_A 167 -----------KYSNKFFR---------------------------FVDYKVLDEADRLLEIGFRDDLETISGILNEKNS 208 (579)
T ss_dssp -----------HHHHHHCT---------------------------TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS
T ss_pred -----------hccccccc---------------------------cCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhc
Confidence 00000000 178999999999987 577777777766543222
Q ss_pred hccccceEEEEecCCCC-HHHHHHHhhcCCCccEEEec-CCCcc---cceEEEEEeechhhHHHHHHHhhHHHHHHHHHH
Q psy14582 841 ATQEDVRLVGLSATLPN-YKDVATLLRIKPETGLFYFD-NSFRP---VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEH 915 (1689)
Q Consensus 841 ~~~~~~riV~lSATl~n-~~dva~~L~~~~~~~~~~f~-~~~Rp---vpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~ 915 (1689)
.....+++++||||+++ ..+++.++...+.. ++... ...++ ..+.+.+....... .....+...+...+...
T Consensus 209 ~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 285 (579)
T 3sqw_A 209 KSADNIKTLLFSATLDDKVQKLANNIMNKKEC-LFLDTVDKNEPEAHERIDQSVVISEKFA--NSIFAAVEHIKKQIKER 285 (579)
T ss_dssp SCTTCCEEEEEESSCCTHHHHHTTTTCCSSEE-EEEESSCSSSCSSCTTEEEEEEEESSTT--HHHHHHHHHHHHHHHHT
T ss_pred ccccCceEEEEeccCChHHHHHHHHHcCCCce-EEEeecCccccccccccceEEEEecchh--hhHHHHHHHHHHHHhhc
Confidence 33457899999999996 46666655544322 22211 11111 23444444433221 11112222333334444
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHH
Q psy14582 916 AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRT 995 (1689)
Q Consensus 916 ~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~ 995 (1689)
..+.++||||+|++.|..++..|...... ...+..+||+|++.+|.
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~----------------------------------~~~v~~~hg~~~~~~R~ 331 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKK----------------------------------DLPILEFHGKITQNKRT 331 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTT----------------------------------TSCEEEESTTSCHHHHH
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcC----------------------------------CCcEEEecCCCCHHHHH
Confidence 55789999999999999999988763210 23577889999999999
Q ss_pred HHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCc
Q psy14582 996 LVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGR 1075 (1689)
Q Consensus 996 ~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~ 1075 (1689)
.+++.|++|.++|||||+++++|+|+|+|++| | .+++|
T Consensus 332 ~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~V-----------------I-------~~~~p------------------ 369 (579)
T 3sqw_A 332 SLVKRFKKDESGILVCTDVGARGMDFPNVHEV-----------------L-------QIGVP------------------ 369 (579)
T ss_dssp HHHHHHHHCSSEEEEECGGGTSSCCCTTCCEE-----------------E-------EESCC------------------
T ss_pred HHHHHhhcCCCeEEEEcchhhcCCCcccCCEE-----------------E-------EcCCC------------------
Confidence 99999999999999999999999999999999 3 22233
Q ss_pred ceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhh
Q psy14582 1076 WVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLN 1119 (1689)
Q Consensus 1076 ~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 1119 (1689)
.++.+|+||+|||||.| ..|.|++++...+..++..+..
T Consensus 370 ---~s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l~~ 408 (579)
T 3sqw_A 370 ---SELANYIHRIGRTARSG--KEGSSVLFICKDELPFVRELED 408 (579)
T ss_dssp ---SSTTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHHHH
T ss_pred ---CCHHHhhhhccccccCC--CCceEEEEEcccHHHHHHHHHH
Confidence 35789999999999998 7899999999988777766544
No 13
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=368.35 Aligned_cols=365 Identities=18% Similarity=0.218 Sum_probs=238.6
Q ss_pred CCCCCCCCccCCCCccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccC---
Q psy14582 454 KPMGPDETLVPIDKLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINA--- 528 (1689)
Q Consensus 454 ~p~~~~~~l~~~~~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~--- 528 (1689)
.+..++..+ +|++.+.+++. ||.+|||+|.+++|.++ .|+|+|++||||||||++|++|++..+......
T Consensus 12 ~~~~~f~~~----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~ 86 (417)
T 2i4i_A 12 PHIESFSDV----EMGEIIMGNIELTRYTRPTPVQKHAIPIIK-EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEAL 86 (417)
T ss_dssp CCCSSGGGS----CCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHH
T ss_pred cccCCHhhC----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHc-cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchh
Confidence 344445444 68899998886 99999999999999887 799999999999999999999999988654210
Q ss_pred -----CC--CCCCCCeEEEEEccchhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCC
Q psy14582 529 -----DG--TINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN 601 (1689)
Q Consensus 529 -----~g--~~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~ 601 (1689)
.+ .....+.++||++|||+||.|+++.+.+-. .....++..+.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-------------------------~~~~~~~~~~~g~~~- 140 (417)
T 2i4i_A 87 RAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFS-------------------------YRSRVRPCVVYGGAD- 140 (417)
T ss_dssp HHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHH-------------------------TTSSCCEEEECSSSC-
T ss_pred hccccccccccccCCccEEEECCcHHHHHHHHHHHHHHh-------------------------CcCCceEEEEECCCC-
Confidence 00 011234689999999999999986553311 001112222111110
Q ss_pred HHHHHHHHhhCCCCCceeecCCCccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCcc
Q psy14582 602 YKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQ 681 (1689)
Q Consensus 602 ~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~ 681 (1689)
.... .......++|+|+| |+ .
T Consensus 141 ----------------------------------------~~~~----------~~~~~~~~~I~v~T--------p~-~ 161 (417)
T 2i4i_A 141 ----------------------------------------IGQQ----------IRDLERGCHLLVAT--------PG-R 161 (417)
T ss_dssp ----------------------------------------HHHH----------HHHHTTCCSEEEEC--------HH-H
T ss_pred ----------------------------------------HHHH----------HHHhhCCCCEEEEC--------hH-H
Confidence 0000 00011267899999 98 3
Q ss_pred ccccccCCCcceeEEEEeCCCCcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeec
Q psy14582 682 WDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLP 761 (1689)
Q Consensus 682 wd~~~~g~~e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aP 761 (1689)
+......
T Consensus 162 l~~~l~~------------------------------------------------------------------------- 168 (417)
T 2i4i_A 162 LVDMMER------------------------------------------------------------------------- 168 (417)
T ss_dssp HHHHHHT-------------------------------------------------------------------------
T ss_pred HHHHHHc-------------------------------------------------------------------------
Confidence 3221110
Q ss_pred CCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHH
Q psy14582 762 RGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIE 840 (1689)
Q Consensus 762 TGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~ 840 (1689)
+ + ... ..++++|+||+|.+.+ .++..+..++.+.. .
T Consensus 169 -~--~---------------~~~----------------------~~~~~iViDEah~~~~~~~~~~~~~i~~~~~---~ 205 (417)
T 2i4i_A 169 -G--K---------------IGL----------------------DFCKYLVLDEADRMLDMGFEPQIRRIVEQDT---M 205 (417)
T ss_dssp -T--S---------------BCC----------------------TTCCEEEESSHHHHHHTTCHHHHHHHHTSSS---C
T ss_pred -C--C---------------cCh----------------------hhCcEEEEEChhHhhccCcHHHHHHHHHhcc---C
Confidence 0 0 000 0078999999998876 45555554432100 0
Q ss_pred hccccceEEEEecCCCC-HHHHHHHhhcCCCccEEEec-CCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCC
Q psy14582 841 ATQEDVRLVGLSATLPN-YKDVATLLRIKPETGLFYFD-NSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGR 918 (1689)
Q Consensus 841 ~~~~~~riV~lSATl~n-~~dva~~L~~~~~~~~~~f~-~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~ 918 (1689)
......+++++|||+++ ...+...+...+. ..... ....+..+.+.+..+....... .+.+.+.....+
T Consensus 206 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~l~~~l~~~~~~ 276 (417)
T 2i4i_A 206 PPKGVRHTMMFSATFPKEIQMLARDFLDEYI--FLAVGRVGSTSENITQKVVWVEESDKRS-------FLLDLLNATGKD 276 (417)
T ss_dssp CCBTTBEEEEEESCCCHHHHHHHHHHCSSCE--EEEEC----CCSSEEEEEEECCGGGHHH-------HHHHHHHTCCTT
T ss_pred CCcCCcEEEEEEEeCCHHHHHHHHHHcCCCE--EEEeCCCCCCccCceEEEEEeccHhHHH-------HHHHHHHhcCCC
Confidence 01226789999999983 4445444333321 11211 1122334666666665443322 122223233356
Q ss_pred CeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHH
Q psy14582 919 NQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVE 998 (1689)
Q Consensus 919 ~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve 998 (1689)
+++||||++++.+..++..|... ...+..+||+|++.+|..++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~~~~~r~~~~ 319 (417)
T 2i4i_A 277 SLTLVFVETKKGADSLEDFLYHE-------------------------------------GYACTSIHGDRSQRDREEAL 319 (417)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHC-------------------------------------CCCeeEecCCCCHHHHHHHH
Confidence 79999999999999999988652 23577889999999999999
Q ss_pred HHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCccee
Q psy14582 999 DLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVE 1078 (1689)
Q Consensus 999 ~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~ 1078 (1689)
+.|++|.++|||||+++++|+|+|++++| | . ||+ +
T Consensus 320 ~~f~~g~~~vlvaT~~~~~Gidip~v~~V-----------------i-------~---------------~~~------p 354 (417)
T 2i4i_A 320 HQFRSGKSPILVATAVAARGLDISNVKHV-----------------I-------N---------------FDL------P 354 (417)
T ss_dssp HHHHHTSSCEEEECHHHHTTSCCCCEEEE-----------------E-------E---------------SSC------C
T ss_pred HHHHcCCCCEEEECChhhcCCCcccCCEE-----------------E-------E---------------EcC------C
Confidence 99999999999999999999999999998 3 2 332 2
Q ss_pred cCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHH
Q psy14582 1079 LGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSL 1117 (1689)
Q Consensus 1079 ~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 1117 (1689)
.++.+|+||+|||||.| ..|.++++++..+...+..+
T Consensus 355 ~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~l 391 (417)
T 2i4i_A 355 SDIEEYVHRIGRTGRVG--NLGLATSFFNERNINITKDL 391 (417)
T ss_dssp SSHHHHHHHHTTBCC----CCEEEEEEECGGGGGGHHHH
T ss_pred CCHHHHHHhcCccccCC--CCceEEEEEccccHHHHHHH
Confidence 35899999999999998 78999999998776554443
No 14
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.7e-35 Score=397.80 Aligned_cols=272 Identities=25% Similarity=0.359 Sum_probs=191.4
Q ss_pred hhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
+++||+||+|.+.+ .+|..++.++.. .++.+++|+||||++|..++++|++......++.+...+||+|+.+
T Consensus 148 l~lvViDEaH~l~d~~~g~~~e~ii~~-------l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~ 220 (997)
T 4a4z_A 148 VEFVIFDEVHYVNDQDRGVVWEEVIIM-------LPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEI 220 (997)
T ss_dssp EEEEEECCTTCCCTTCTTCCHHHHHHH-------SCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEE
T ss_pred CCEEEEECcccccccchHHHHHHHHHh-------cccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceE
Confidence 88999999999988 699998877643 4678999999999999999999998655455888899999999987
Q ss_pred EEEee-------chh------hHHHHHHH---------------------------------------------------
Q psy14582 888 QYIGV-------TEK------KALKRFQV--------------------------------------------------- 903 (1689)
Q Consensus 888 ~~~~~-------~~~------~~~~~~~~--------------------------------------------------- 903 (1689)
++... ... ........
T Consensus 221 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~ 300 (997)
T 4a4z_A 221 NIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGS 300 (997)
T ss_dssp EEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------------------------------------
T ss_pred EEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 76431 000 00000000
Q ss_pred ------------------hhHHHHHHH---HHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHH
Q psy14582 904 ------------------MNDIVYEKV---MEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVL 962 (1689)
Q Consensus 904 ------------------m~~~~~~~i---~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l 962 (1689)
..+..+..+ +......++||||+|++.|+.++..|...+......... ....+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~------i~~~~ 374 (997)
T 4a4z_A 301 RGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQ------IHMFI 374 (997)
T ss_dssp ----------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHH------HHHHH
T ss_pred cccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHH------HHHHH
Confidence 000111112 222345799999999999999999886533211100000 00111
Q ss_pred HHhhhhc--------cchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHH
Q psy14582 963 RTEADQV--------KNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVED 1034 (1689)
Q Consensus 963 ~~~~~~~--------~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~ 1034 (1689)
......+ ....+++++..||++|||||++.+|..+++.|++|.++||
T Consensus 375 ~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVL------------------------- 429 (997)
T 4a4z_A 375 EKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVL------------------------- 429 (997)
T ss_dssp HHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEE-------------------------
T ss_pred HHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEE-------------------------
Confidence 1111111 1234678889999999999999999999999999999999
Q ss_pred HhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecC--CcHH
Q psy14582 1035 LFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNH--SELQ 1112 (1689)
Q Consensus 1035 ~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~--~~~~ 1112 (1689)
|||.++++|+|+|+.+||+.+...||+. ...++|+.+|+||+|||||.|.|..|.+++++.. .+..
T Consensus 430 ----------vAT~~~a~GIDiP~~~VVi~~~~k~dg~--~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~ 497 (997)
T 4a4z_A 430 ----------FATETFAMGLNLPTRTVIFSSIRKHDGN--GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIA 497 (997)
T ss_dssp ----------EECTHHHHSCCCCCSEEEESCSEEEETT--EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHH
T ss_pred ----------EEchHhhCCCCCCCceEEEeccccccCc--cCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHH
Confidence 5555555555566666677777888875 3468899999999999999999999999999943 4556
Q ss_pred HHHHHhh-CcCCccccccc
Q psy14582 1113 YYLSLLN-HQLPVESQMIS 1130 (1689)
Q Consensus 1113 ~y~~ll~-~~~pieS~l~~ 1130 (1689)
.+.+++. .+.|++|++..
T Consensus 498 ~~~~~i~~~~~~l~s~~~~ 516 (997)
T 4a4z_A 498 TFKEVTMGVPTRLQSQFRL 516 (997)
T ss_dssp HHHHHHHSCCCCCCCCCCC
T ss_pred HHHHHhcCCCccccccccc
Confidence 6666554 66788887643
No 15
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7.4e-34 Score=350.64 Aligned_cols=214 Identities=20% Similarity=0.254 Sum_probs=147.3
Q ss_pred hhccccCCceeecCCch--hHHHHHHHHHHHHHHhccccceEEEEecCCCC-HHHHHHHhhcCCCccEEEecC-CCcccc
Q psy14582 809 VGNFGKDEIHLLHDERG--PVLEALIARTIRNIEATQEDVRLVGLSATLPN-YKDVATLLRIKPETGLFYFDN-SFRPVA 884 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG--~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~-~~Rpvp 884 (1689)
++++|+||+|.+.+..+ ..+.. .........+++++|||+++ ...++......+. ...... ...+..
T Consensus 169 ~~~iViDEah~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 239 (412)
T 3fht_A 169 IKVFVLDEADVMIATQGHQDQSIR-------IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN--VIKLKREEETLDT 239 (412)
T ss_dssp CCEEEEETHHHHHSTTTTHHHHHH-------HHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCE--EECCCGGGSSCTT
T ss_pred CcEEEEeCHHHHhhcCCcHHHHHH-------HHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCe--EEeeccccccccC
Confidence 88999999998876322 22221 12345678899999999994 3344444443321 111111 122334
Q ss_pred eEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHH
Q psy14582 885 LEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRT 964 (1689)
Q Consensus 885 L~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~ 964 (1689)
+.+.+........ ....+ ..+......+++||||++++.+..++..|...
T Consensus 240 ~~~~~~~~~~~~~--~~~~l-----~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----------------------- 289 (412)
T 3fht_A 240 IKQYYVLCSSRDE--KFQAL-----CNLYGAITIAQAMIFCHTRKTASWLAAELSKE----------------------- 289 (412)
T ss_dssp EEEEEEECSSHHH--HHHHH-----HHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT-----------------------
T ss_pred ceEEEEEcCChHH--HHHHH-----HHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC-----------------------
Confidence 5555555443221 11111 12333445689999999999999999988752
Q ss_pred hhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEE
Q psy14582 965 EADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVL 1044 (1689)
Q Consensus 965 ~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vL 1044 (1689)
..+++++||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|
T Consensus 290 --------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~V----------------- 338 (412)
T 3fht_A 290 --------------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVV----------------- 338 (412)
T ss_dssp --------------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEE-----------------
T ss_pred --------------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEE-----------------
Confidence 2457889999999999999999999999999999999999999999998
Q ss_pred EEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHH
Q psy14582 1045 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLS 1116 (1689)
Q Consensus 1045 VaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 1116 (1689)
| .+++|.. ...+.+..+|+||+|||||.| ..|.+++++...+...+.+
T Consensus 339 i-------~~~~p~~---------------~~~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~ 386 (412)
T 3fht_A 339 I-------NFDLPVD---------------KDGNPDNETYLHRIGRTGRFG--KRGLAVNMVDSKHSMNILN 386 (412)
T ss_dssp E-------ESSCCBC---------------SSSSBCHHHHHHHHTTSSCTT--CCEEEEEEECSHHHHHHHH
T ss_pred E-------EECCCCC---------------CCCCcchheeecccCcccCCC--CCceEEEEEcChhhHHHHH
Confidence 3 2334422 111357899999999999988 7899999998765444433
No 16
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.2e-34 Score=358.28 Aligned_cols=343 Identities=16% Similarity=0.243 Sum_probs=230.6
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+|++.+.+.+. ||.+|+|+|.++++.++ .|+|++++||||||||++|++|+++.+... ..+.++||++|
T Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--------~~~~~~lil~P 113 (410)
T 2j0s_A 43 GLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQSQSGTGKTATFSISVLQCLDIQ--------VRETQALILAP 113 (410)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHTCCTT--------SCSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCCchHHHHHHHHHHHhhc--------cCCceEEEEcC
Confidence 57888888886 99999999999999988 789999999999999999999999876421 13468999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
||+|+.|+...+.+-.. .....+..+.+
T Consensus 114 t~~L~~q~~~~~~~~~~-------------------------~~~~~~~~~~g--------------------------- 141 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGD-------------------------YMNVQCHACIG--------------------------- 141 (410)
T ss_dssp SHHHHHHHHHHHHHHTT-------------------------TTTCCEEEECT---------------------------
T ss_pred cHHHHHHHHHHHHHHhc-------------------------cCCeEEEEEEC---------------------------
Confidence 99999999865533110 00011111100
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
....... . ......++|+|+| |+..++...++
T Consensus 142 --------------~~~~~~~-~---------~~~~~~~~ivv~T--------p~~l~~~l~~~---------------- 173 (410)
T 2j0s_A 142 --------------GTNVGED-I---------RKLDYGQHVVAGT--------PGRVFDMIRRR---------------- 173 (410)
T ss_dssp --------------TSCHHHH-H---------HHHHHCCSEEEEC--------HHHHHHHHHTT----------------
T ss_pred --------------CCCHHHH-H---------HHhhcCCCEEEcC--------HHHHHHHHHhC----------------
Confidence 0000000 0 0001167899999 88222211110
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
. ...
T Consensus 174 -----------------------------------------------------------~-----------------~~~ 177 (410)
T 2j0s_A 174 -----------------------------------------------------------S-----------------LRT 177 (410)
T ss_dssp -----------------------------------------------------------S-----------------SCC
T ss_pred -----------------------------------------------------------C-----------------ccH
Confidence 0 000
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT 863 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~ 863 (1689)
..++++|+||+|.+.+ .....+..+ .....+..+++++|||+++ ++.+
T Consensus 178 ----------------------~~~~~vViDEah~~~~~~~~~~~~~i-------~~~~~~~~~~i~~SAT~~~--~~~~ 226 (410)
T 2j0s_A 178 ----------------------RAIKMLVLDEADEMLNKGFKEQIYDV-------YRYLPPATQVVLISATLPH--EILE 226 (410)
T ss_dssp ----------------------TTCCEEEEETHHHHTSTTTHHHHHHH-------HTTSCTTCEEEEEESCCCH--HHHT
T ss_pred ----------------------hheeEEEEccHHHHHhhhhHHHHHHH-------HHhCccCceEEEEEcCCCH--HHHH
Confidence 0078999999998876 333333322 2345678899999999983 3333
Q ss_pred HhhcCCCccEEEe--cCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHh
Q psy14582 864 LLRIKPETGLFYF--DNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDM 941 (1689)
Q Consensus 864 ~L~~~~~~~~~~f--~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~ 941 (1689)
++........... .....+..+.+.+..+..... ....+ ..+......+++||||++++.+..++..|...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--k~~~l-----~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~ 299 (410)
T 2j0s_A 227 MTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEW--KFDTL-----CDLYDTLTITQAVIFCNTKRKVDWLTEKMREA 299 (410)
T ss_dssp TGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTH--HHHHH-----HHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHh--HHHHH-----HHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC
Confidence 3332211212222 112233345666665544321 11111 12233345679999999999999999988752
Q ss_pred hhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCC
Q psy14582 942 CLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNL 1021 (1689)
Q Consensus 942 ~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDI 1021 (1689)
..++..+||+|++.+|..+++.|++|.++|||||+++++|+|+
T Consensus 300 -------------------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 342 (410)
T 2j0s_A 300 -------------------------------------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 342 (410)
T ss_dssp -------------------------------------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCC
T ss_pred -------------------------------------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCc
Confidence 2357788999999999999999999999999999999999999
Q ss_pred CCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1022 PAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1022 p~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
|++++| | .+++| .++.+|+||+|||||.| ..|.
T Consensus 343 ~~v~~V-----------------i-------~~~~p---------------------~s~~~~~Qr~GR~gR~g--~~g~ 375 (410)
T 2j0s_A 343 PQVSLI-----------------I-------NYDLP---------------------NNRELYIHRIGRSGRYG--RKGV 375 (410)
T ss_dssp TTEEEE-----------------E-------ESSCC---------------------SSHHHHHHHHTTSSGGG--CCEE
T ss_pred ccCCEE-----------------E-------EECCC---------------------CCHHHHHHhcccccCCC--CceE
Confidence 999998 3 22223 35889999999999998 7899
Q ss_pred EEEEecCCcHHHHHH
Q psy14582 1102 GVLITNHSELQYYLS 1116 (1689)
Q Consensus 1102 ~iil~~~~~~~~y~~ 1116 (1689)
++++++..+...+..
T Consensus 376 ~~~~~~~~~~~~~~~ 390 (410)
T 2j0s_A 376 AINFVKNDDIRILRD 390 (410)
T ss_dssp EEEEEEGGGHHHHHH
T ss_pred EEEEecHHHHHHHHH
Confidence 999999888665544
No 17
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.7e-33 Score=344.96 Aligned_cols=220 Identities=22% Similarity=0.299 Sum_probs=151.8
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
++++|+||+|.+.+..+.. ..+ ...........+++++|||+++ ...++.++...+.. +........+..+.+
T Consensus 146 ~~~iIiDEah~~~~~~~~~--~~~---~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 219 (395)
T 3pey_A 146 IKIFVLDEADNMLDQQGLG--DQC---IRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANT-LELQTNEVNVDAIKQ 219 (395)
T ss_dssp CCEEEEETHHHHHHSTTHH--HHH---HHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEE-ECCCGGGCSCTTEEE
T ss_pred CCEEEEEChhhhcCccccH--HHH---HHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeE-EEccccccccccccE
Confidence 7899999999887643311 111 1223345677999999999995 45566555543321 212222233334555
Q ss_pred EEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhh
Q psy14582 888 QYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAD 967 (1689)
Q Consensus 888 ~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~ 967 (1689)
.+........ ... ....+......+++||||++++.+..++..|...
T Consensus 220 ~~~~~~~~~~--~~~-----~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-------------------------- 266 (395)
T 3pey_A 220 LYMDCKNEAD--KFD-----VLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE-------------------------- 266 (395)
T ss_dssp EEEECSSHHH--HHH-----HHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT--------------------------
T ss_pred EEEEcCchHH--HHH-----HHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc--------------------------
Confidence 5555433221 111 1122334445689999999999999999988752
Q ss_pred hccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEc
Q psy14582 968 QVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVST 1047 (1689)
Q Consensus 968 ~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT 1047 (1689)
...+.++||+|++.+|..+++.|++|.++|||||+++++|+|+|++++| |
T Consensus 267 -----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~V-----------------i-- 316 (395)
T 3pey_A 267 -----------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMV-----------------V-- 316 (395)
T ss_dssp -----------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEE-----------------E--
T ss_pred -----------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEE-----------------E--
Confidence 2347788999999999999999999999999999999999999999998 3
Q ss_pred ccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhh
Q psy14582 1048 ATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLN 1119 (1689)
Q Consensus 1048 ~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 1119 (1689)
.+++|. ......++.+|+||+|||||.| ..|.+++++...+...+.+.+.
T Consensus 317 -----~~~~p~---------------~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~~i~ 366 (395)
T 3pey_A 317 -----NYDLPT---------------LANGQADPATYIHRIGRTGRFG--RKGVAISFVHDKNSFNILSAIQ 366 (395)
T ss_dssp -----ESSCCB---------------CTTSSBCHHHHHHHHTTSSCTT--CCEEEEEEECSHHHHHHHHHHH
T ss_pred -----EcCCCC---------------CCcCCCCHHHhhHhccccccCC--CCceEEEEEechHHHHHHHHHH
Confidence 233332 1222457999999999999998 7899999998766555544443
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1e-33 Score=348.49 Aligned_cols=345 Identities=19% Similarity=0.244 Sum_probs=232.3
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|++.+.+.+. ||.+|+|+|.++++.++ +|++++++||||||||++|++|++..+... ..+.+++|++|
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~li~a~TGsGKT~~~~~~~~~~~~~~--------~~~~~~lil~P 97 (400)
T 1s2m_A 27 YLKRELLMGIFEAGFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKTAAFVIPTLEKVKPK--------LNKIQALIMVP 97 (400)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCTTSCHHHHHHHHHHHHCCTT--------SCSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEECCCCcHHHHHHHHHHHHHHhhc--------cCCccEEEEcC
Confidence 57788887775 99999999999999888 789999999999999999999999877532 13458999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
|++|+.|+...+.+-.- .....+..+.+.
T Consensus 98 ~~~L~~q~~~~~~~~~~-------------------------~~~~~~~~~~g~-------------------------- 126 (400)
T 1s2m_A 98 TRELALQTSQVVRTLGK-------------------------HCGISCMVTTGG-------------------------- 126 (400)
T ss_dssp SHHHHHHHHHHHHHHTT-------------------------TTTCCEEEECSS--------------------------
T ss_pred CHHHHHHHHHHHHHHhc-------------------------ccCceEEEEeCC--------------------------
Confidence 99999999865533110 001111111110
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
..... ........++|+|+| |+ .+......
T Consensus 127 ---------------~~~~~----------~~~~~~~~~~Ivv~T--------~~-~l~~~~~~---------------- 156 (400)
T 1s2m_A 127 ---------------TNLRD----------DILRLNETVHILVGT--------PG-RVLDLASR---------------- 156 (400)
T ss_dssp ---------------SCHHH----------HHHHTTSCCSEEEEC--------HH-HHHHHHHT----------------
T ss_pred ---------------cchHH----------HHHHhcCCCCEEEEc--------hH-HHHHHHHh----------------
Confidence 00000 001112367899999 88 22111110
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
.|. . +
T Consensus 157 -----------------------------------------~~~-------------~---------------~------ 161 (400)
T 1s2m_A 157 -----------------------------------------KVA-------------D---------------L------ 161 (400)
T ss_dssp -----------------------------------------TCS-------------C---------------C------
T ss_pred -----------------------------------------CCc-------------c---------------c------
Confidence 000 0 0
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT 863 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~ 863 (1689)
..++++|+||+|.+.+ ..+..++.++ ....+..+++++|||++. .+..
T Consensus 162 ----------------------~~~~~vIiDEaH~~~~~~~~~~~~~i~-------~~~~~~~~~i~lSAT~~~--~~~~ 210 (400)
T 1s2m_A 162 ----------------------SDCSLFIMDEADKMLSRDFKTIIEQIL-------SFLPPTHQSLLFSATFPL--TVKE 210 (400)
T ss_dssp ----------------------TTCCEEEEESHHHHSSHHHHHHHHHHH-------TTSCSSCEEEEEESCCCH--HHHH
T ss_pred ----------------------ccCCEEEEeCchHhhhhchHHHHHHHH-------HhCCcCceEEEEEecCCH--HHHH
Confidence 0078999999998865 3333333322 234567899999999993 3333
Q ss_pred HhhcCCCcc-EEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhh
Q psy14582 864 LLRIKPETG-LFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMC 942 (1689)
Q Consensus 864 ~L~~~~~~~-~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~ 942 (1689)
++....... ............+.+.+..+........ ...+......+++||||++++.+..++..|...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--------l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~- 281 (400)
T 1s2m_A 211 FMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHC--------LNTLFSKLQINQAIIFCNSTNRVELLAKKITDL- 281 (400)
T ss_dssp HHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHH--------HHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH-
T ss_pred HHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHH--------HHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc-
Confidence 332211111 1112222333345566655554333221 122334456689999999999999999988652
Q ss_pred hhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCC
Q psy14582 943 LEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1022 (1689)
Q Consensus 943 ~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp 1022 (1689)
..++.++||+|+..+|..+++.|++|.++|||||+++++|+|+|
T Consensus 282 ------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip 325 (400)
T 1s2m_A 282 ------------------------------------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQ 325 (400)
T ss_dssp ------------------------------------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCT
T ss_pred ------------------------------------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCcc
Confidence 23567889999999999999999999999999999999999999
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
++++| |. |++ +.++.+|+||+|||||.| ..|.+
T Consensus 326 ~~~~V-----------------i~----------------------~~~------p~s~~~~~Qr~GR~gR~g--~~g~~ 358 (400)
T 1s2m_A 326 AVNVV-----------------IN----------------------FDF------PKTAETYLHRIGRSGRFG--HLGLA 358 (400)
T ss_dssp TEEEE-----------------EE----------------------SSC------CSSHHHHHHHHCBSSCTT--CCEEE
T ss_pred CCCEE-----------------EE----------------------eCC------CCCHHHHHHhcchhcCCC--CCceE
Confidence 98888 31 332 245889999999999998 78999
Q ss_pred EEEecCCcHHHHHHHhh
Q psy14582 1103 VLITNHSELQYYLSLLN 1119 (1689)
Q Consensus 1103 iil~~~~~~~~y~~ll~ 1119 (1689)
+++++..+...+.++..
T Consensus 359 ~~l~~~~~~~~~~~i~~ 375 (400)
T 1s2m_A 359 INLINWNDRFNLYKIEQ 375 (400)
T ss_dssp EEEECGGGHHHHHHHHH
T ss_pred EEEeccchHHHHHHHHH
Confidence 99999988766655443
No 19
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.2e-33 Score=341.66 Aligned_cols=349 Identities=19% Similarity=0.256 Sum_probs=233.9
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|++.+.+++. ||.+|+|+|.++++.++ .|+|++++||||||||++|++|++..+... ..+.++||++|
T Consensus 14 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--------~~~~~~lil~P 84 (391)
T 1xti_A 14 LLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEPV--------TGQVSVLVMCH 84 (391)
T ss_dssp CCCHHHHHHHHHHSCCSCCHHHHHHHHHHT-TTCCEEEECSSCSSHHHHHHHHHHHHCCCC--------TTCCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHhhccc--------CCCeeEEEECC
Confidence 57888888886 99999999999999888 689999999999999999999999877532 13458999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
|++|+.|+...+.+-. ...+..++..+.+....
T Consensus 85 ~~~L~~q~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~----------------------- 117 (391)
T 1xti_A 85 TRELAFQISKEYERFS------------------------KYMPNVKVAVFFGGLSI----------------------- 117 (391)
T ss_dssp CHHHHHHHHHHHHHHT------------------------TTCTTCCEEEECTTSCH-----------------------
T ss_pred CHHHHHHHHHHHHHHH------------------------hhCCCeEEEEEeCCCCH-----------------------
Confidence 9999999985553211 00011222222111110
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
.. ....+. .+.++|+|+| |+ .+......
T Consensus 118 --------------~~--~~~~~~-----------~~~~~iiv~T--------~~-~l~~~~~~---------------- 145 (391)
T 1xti_A 118 --------------KK--DEEVLK-----------KNCPHIVVGT--------PG-RILALARN---------------- 145 (391)
T ss_dssp --------------HH--HHHHHH-----------HSCCSEEEEC--------HH-HHHHHHHT----------------
T ss_pred --------------HH--HHHHHh-----------cCCCCEEEEC--------HH-HHHHHHHc----------------
Confidence 00 000000 1246899999 88 32221110
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
+. ...
T Consensus 146 ----------------------------------------------------------~~-----------------~~~ 150 (391)
T 1xti_A 146 ----------------------------------------------------------KS-----------------LNL 150 (391)
T ss_dssp ----------------------------------------------------------TS-----------------SCC
T ss_pred ----------------------------------------------------------CC-----------------ccc
Confidence 00 000
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCC-HHHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN-YKDVAT 863 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dva~ 863 (1689)
..++++|+||+|.+.+..+.. . .+...........+++++|||+++ ...+..
T Consensus 151 ----------------------~~~~~vViDEaH~~~~~~~~~--~---~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~ 203 (391)
T 1xti_A 151 ----------------------KHIKHFILDECDKMLEQLDMR--R---DVQEIFRMTPHEKQVMMFSATLSKEIRPVCR 203 (391)
T ss_dssp ----------------------TTCSEEEECSHHHHTSSHHHH--H---HHHHHHHTSCSSSEEEEEESSCCSTHHHHHH
T ss_pred ----------------------cccCEEEEeCHHHHhhccchH--H---HHHHHHhhCCCCceEEEEEeeCCHHHHHHHH
Confidence 007899999999987642211 1 111223345668899999999994 455554
Q ss_pred HhhcCCCccEEEecCC--CcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHh
Q psy14582 864 LLRIKPETGLFYFDNS--FRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDM 941 (1689)
Q Consensus 864 ~L~~~~~~~~~~f~~~--~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~ 941 (1689)
.+...+. ....... .....+.+.+........... +. .++....++++||||++++.+..++..|...
T Consensus 204 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~-~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~ 273 (391)
T 1xti_A 204 KFMQDPM--EIFVDDETKLTLHGLQQYYVKLKDNEKNRK-------LF-DLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ 273 (391)
T ss_dssp HHCSSCE--EEECCCCCCCCCTTCEEEEEECCGGGHHHH-------HH-HHHHHSCCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred HHcCCCe--EEEecCccccCcccceEEEEEcCchhHHHH-------HH-HHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC
Confidence 4433332 2222222 223346666666554433221 11 2333446789999999999999999988752
Q ss_pred hhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCC
Q psy14582 942 CLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNL 1021 (1689)
Q Consensus 942 ~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDI 1021 (1689)
+ ..+..+||+|+..+|..+++.|++|..+|||||+++++|+|+
T Consensus 274 ~-------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi 316 (391)
T 1xti_A 274 N-------------------------------------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDI 316 (391)
T ss_dssp T-------------------------------------CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCC
T ss_pred C-------------------------------------CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCc
Confidence 1 246678999999999999999999999999999999999999
Q ss_pred CCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1022 PAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1022 p~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
|++++| |. |++ +.++.+|+||+|||||.| ..|.
T Consensus 317 ~~~~~V-----------------i~----------------------~~~------p~s~~~~~Qr~GR~~R~g--~~g~ 349 (391)
T 1xti_A 317 ERVNIA-----------------FN----------------------YDM------PEDSDTYLHRVARAGRFG--TKGL 349 (391)
T ss_dssp TTEEEE-----------------EE----------------------SSC------CSSHHHHHHHHCBCSSSC--CCCE
T ss_pred ccCCEE-----------------EE----------------------eCC------CCCHHHHHHhcccccCCC--CceE
Confidence 998888 32 332 235899999999999998 7899
Q ss_pred EEEEecCCcHHHHHHHhh
Q psy14582 1102 GVLITNHSELQYYLSLLN 1119 (1689)
Q Consensus 1102 ~iil~~~~~~~~y~~ll~ 1119 (1689)
++++++..+...+...+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~ 367 (391)
T 1xti_A 350 AITFVSDENDAKILNDVQ 367 (391)
T ss_dssp EEEEECSHHHHHHHHHHH
T ss_pred EEEEEcccchHHHHHHHH
Confidence 999998876554444333
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.5e-35 Score=372.45 Aligned_cols=219 Identities=20% Similarity=0.271 Sum_probs=37.5
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCC-HHHHHHHhhcCCCccEEEecC-CCcccceE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN-YKDVATLLRIKPETGLFYFDN-SFRPVALE 886 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~-~~RpvpL~ 886 (1689)
+++||+||+|.+.+..+.... ............+++++|||+++ ...++..+...+. .+.... ...+..+.
T Consensus 236 ~~~iViDEah~~~~~~~~~~~-----~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~ 308 (479)
T 3fmp_B 236 IKVFVLDEADVMIATQGHQDQ-----SIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN--VIKLKREEETLDTIK 308 (479)
T ss_dssp CCEEEECCHHHHHTSTTHHHH-----HHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEE--EEEEC----------
T ss_pred CCEEEEECHHHHhhcCCcHHH-----HHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCe--EEeccccccCcCCce
Confidence 889999999988764332211 11223345678999999999994 3455554443321 222221 11222333
Q ss_pred EEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhh
Q psy14582 887 QQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEA 966 (1689)
Q Consensus 887 ~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~ 966 (1689)
+.+..+..... ....+. .+......+++||||++++.|..++..|...
T Consensus 309 ~~~~~~~~~~~--~~~~l~-----~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~------------------------- 356 (479)
T 3fmp_B 309 QYYVLCSSRDE--KFQALC-----NLYGAITIAQAMIFCHTRKTASWLAAELSKE------------------------- 356 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCHHH--HHHHHH-----HHHhhccCCceEEEeCcHHHHHHHHHHHHhC-------------------------
Confidence 44433322111 111111 1222334578999999999999998887642
Q ss_pred hhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEE
Q psy14582 967 DQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVS 1046 (1689)
Q Consensus 967 ~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVa 1046 (1689)
..++++|||+|++.+|..+++.|++|.++|||||+++++|+|+|++++| |
T Consensus 357 ------------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~V-----------------I- 406 (479)
T 3fmp_B 357 ------------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVV-----------------I- 406 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEE-----------------E-
Confidence 2357788999999999999999999999999999999999999999998 3
Q ss_pred cccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhh
Q psy14582 1047 TATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLN 1119 (1689)
Q Consensus 1047 T~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 1119 (1689)
.+++|.. ...+.+..+|+||+|||||.| ..|.++++++..+...+.+.+.
T Consensus 407 ------~~d~p~~---------------~~~~~s~~~~~Qr~GRagR~g--~~G~~i~~~~~~~~~~~~~~i~ 456 (479)
T 3fmp_B 407 ------NFDLPVD---------------KDGNPDNETYLHRIGRTGRFG--KRGLAVNMVDSKHSMNILNRIQ 456 (479)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ------EecCCCC---------------CccCCCHHHHHHHhcccccCC--CCceEEEEEcCcchHHHHHHHH
Confidence 3444432 111246789999999999988 7899999998766444444333
No 21
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=9.1e-34 Score=350.28 Aligned_cols=344 Identities=17% Similarity=0.260 Sum_probs=218.0
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|++.+.+.+. ||..|+|+|.++++.++ .|+|++++||||||||++|++|+++.+... ..+.+++|++|
T Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--------~~~~~~lil~P 116 (414)
T 3eiq_A 46 NLSESLLRGIYAYGFEKPSAIQQRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQIELD--------LKATQALVLAP 116 (414)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEECCCSCSSSHHHHHHHHHHHCCTT--------SCSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHhHHHh-CCCCEEEECCCCCcccHHHHHHHHHHHhhc--------CCceeEEEEeC
Confidence 56788887775 99999999999999888 799999999999999999999999887542 13458999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
|++|+.|+...+.+... .....+....+..
T Consensus 117 ~~~L~~q~~~~~~~~~~-------------------------~~~~~~~~~~~~~------------------------- 146 (414)
T 3eiq_A 117 TRELAQQIQKVVMALGD-------------------------YMGASCHACIGGT------------------------- 146 (414)
T ss_dssp SHHHHHHHHHHHHHHGG-------------------------GSCCCEEECCCCT-------------------------
T ss_pred hHHHHHHHHHHHHHHhc-------------------------ccCceEEEEECCc-------------------------
Confidence 99999999865533110 0000000000000
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
........+ ..+.++|+|+| |+..++...++
T Consensus 147 --------------~~~~~~~~~-----------~~~~~~iiv~T--------~~~l~~~l~~~---------------- 177 (414)
T 3eiq_A 147 --------------NVRAEVQKL-----------QMEAPHIIVGT--------PGRVFDMLNRR---------------- 177 (414)
T ss_dssp --------------THHHHHHHH-----------TTTCCSEEEEC--------HHHHHHHHHHT----------------
T ss_pred --------------chHHHHHHH-----------hcCCCCEEEEC--------HHHHHHHHHcC----------------
Confidence 000000000 01267899999 88222221110
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
+ ...
T Consensus 178 ------------------------------------------~----------------------------------~~~ 181 (414)
T 3eiq_A 178 ------------------------------------------Y----------------------------------LSP 181 (414)
T ss_dssp ------------------------------------------S----------------------------------SCS
T ss_pred ------------------------------------------C----------------------------------ccc
Confidence 0 000
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCC-HHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN-YKDVA 862 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dva 862 (1689)
..++++|+||+|.+.+ ..+..+..++ ....++.+++++|||+++ ..++.
T Consensus 182 ----------------------~~~~~vViDEah~~~~~~~~~~~~~~~-------~~~~~~~~~i~~SAT~~~~~~~~~ 232 (414)
T 3eiq_A 182 ----------------------KYIKMFVLDEADEMLSRGFKDQIYDIF-------QKLNSNTQVVLLSATMPSDVLEVT 232 (414)
T ss_dssp ----------------------TTCCEEEECSHHHHHHTTTHHHHHHHH-------TTSCTTCEEEEECSCCCHHHHHHH
T ss_pred ----------------------ccCcEEEEECHHHhhccCcHHHHHHHH-------HhCCCCCeEEEEEEecCHHHHHHH
Confidence 0078999999998765 4444444332 345678999999999983 33333
Q ss_pred HHhhcCCCccEEEe--cCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHH
Q psy14582 863 TLLRIKPETGLFYF--DNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRD 940 (1689)
Q Consensus 863 ~~L~~~~~~~~~~f--~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~ 940 (1689)
..+...+ .... .....+..+.+.+........ ... .+..+......+++||||++++.+..++..|..
T Consensus 233 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~ 302 (414)
T 3eiq_A 233 KKFMRDP---IRILVKKEELTLEGIRQFYINVEREEW--KLD-----TLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 302 (414)
T ss_dssp TTTCSSC---EEECCCCCCCCTTSCCEEEEECSSSTT--HHH-----HHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHT
T ss_pred HHHcCCC---EEEEecCCccCCCCceEEEEEeChHHh--HHH-----HHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHh
Confidence 3333222 2221 122233345555555543321 111 112233445567999999999999999988864
Q ss_pred hhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCC
Q psy14582 941 MCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVN 1020 (1689)
Q Consensus 941 ~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGID 1020 (1689)
. ..++..+||+|++.+|..+++.|++|.++|||||+++++|+|
T Consensus 303 ~-------------------------------------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 345 (414)
T 3eiq_A 303 R-------------------------------------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGID 345 (414)
T ss_dssp T-------------------------------------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CC
T ss_pred c-------------------------------------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCC
Confidence 2 245778899999999999999999999999999999999999
Q ss_pred CCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1021 LPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1021 Ip~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
+|++++| | . |++ +.+..+|+||+|||||.| ..|
T Consensus 346 ip~v~~V-----------------i-------~---------------~~~------p~s~~~~~Qr~GR~gR~g--~~g 378 (414)
T 3eiq_A 346 VQQVSLV-----------------I-------N---------------YDL------PTNRENYIHRIGRGGRFG--RKG 378 (414)
T ss_dssp GGGCSCE-----------------E-------E---------------SSC------CSSTHHHHHHSCCC---------
T ss_pred ccCCCEE-----------------E-------E---------------eCC------CCCHHHhhhhcCcccCCC--CCc
Confidence 9999998 3 2 332 235789999999999988 789
Q ss_pred EEEEEecCCcHHHHHHH
Q psy14582 1101 EGVLITNHSELQYYLSL 1117 (1689)
Q Consensus 1101 ~~iil~~~~~~~~y~~l 1117 (1689)
.++++++..+...+..+
T Consensus 379 ~~~~~~~~~~~~~~~~~ 395 (414)
T 3eiq_A 379 VAINMVTEEDKRTLRDI 395 (414)
T ss_dssp CEEEEECSTHHHHHHHH
T ss_pred eEEEEEcHHHHHHHHHH
Confidence 99999998887766553
No 22
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.3e-33 Score=359.38 Aligned_cols=214 Identities=21% Similarity=0.283 Sum_probs=154.2
Q ss_pred hhccccCCceeecC-C--chhHHHHHHHHHHHHHHhccccceEEEEecCCCC--HHHHHHHhhcCCCccEEEecCCCccc
Q psy14582 809 VGNFGKDEIHLLHD-E--RGPVLEALIARTIRNIEATQEDVRLVGLSATLPN--YKDVATLLRIKPETGLFYFDNSFRPV 883 (1689)
Q Consensus 809 v~liIiDEiHll~d-~--rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n--~~dva~~L~~~~~~~~~~f~~~~Rpv 883 (1689)
++++|+||+|.+.+ . ..+.+..+ ..+....+++++++||||+++ ..++..+++... ...+...+...
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l-----~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~---~~~~~~~~~r~ 237 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKAL-----GILKRQFPNASLIGLTATATNHVLTDAQKILCIEK---CFTFTASFNRP 237 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGG-----GHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCS---CEEEECCCCCT
T ss_pred CcEEEEECcccccccccccHHHHHHH-----HHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCC---cEEEecCCCCc
Confidence 88999999999865 1 22332221 111223567899999999995 367788887653 23444454444
Q ss_pred ceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHH
Q psy14582 884 ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLR 963 (1689)
Q Consensus 884 pL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~ 963 (1689)
++...+....... ... ...+.+.+.....+.++||||+|++.|+.++..|...
T Consensus 238 nl~~~v~~~~~~~-~~~----~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~---------------------- 290 (591)
T 2v1x_A 238 NLYYEVRQKPSNT-EDF----IEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL---------------------- 290 (591)
T ss_dssp TEEEEEEECCSSH-HHH----HHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT----------------------
T ss_pred ccEEEEEeCCCcH-HHH----HHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC----------------------
Confidence 5544444332211 111 1222233323335689999999999999999998752
Q ss_pred HhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceE
Q psy14582 964 TEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQV 1043 (1689)
Q Consensus 964 ~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~v 1043 (1689)
..+++.+||+|++.+|..+++.|++|.++|||||+++++|||+|+|++|
T Consensus 291 ---------------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~V---------------- 339 (591)
T 2v1x_A 291 ---------------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFV---------------- 339 (591)
T ss_dssp ---------------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEE----------------
T ss_pred ---------------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEE----------------
Confidence 2356788999999999999999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhh
Q psy14582 1044 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLN 1119 (1689)
Q Consensus 1044 LVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 1119 (1689)
| .+++| .|+.+|.||+|||||.| ..|.|+++++..+...+..++.
T Consensus 340 -I-------~~~~p---------------------~s~~~y~Qr~GRaGR~G--~~g~~i~l~~~~D~~~~~~~~~ 384 (591)
T 2v1x_A 340 -I-------HHSMS---------------------KSMENYYQESGRAGRDD--MKADCILYYGFGDIFRISSMVV 384 (591)
T ss_dssp -E-------ESSCC---------------------SSHHHHHHHHTTSCTTS--SCEEEEEEECHHHHHHHHHHTT
T ss_pred -E-------EeCCC---------------------CCHHHHHHHhccCCcCC--CCceEEEEEChHHHHHHHHHHh
Confidence 3 33333 35899999999999988 7899999998888777766654
No 23
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.2e-32 Score=360.98 Aligned_cols=344 Identities=16% Similarity=0.191 Sum_probs=221.9
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQ 888 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~ 888 (1689)
++++|+||+|. |+...+.+...+ +.+....++.++|++|||++ .++++.|++..+ ++. ...+..|+++.
T Consensus 209 ~~~lIlDEah~----R~ld~d~~~~~l-~~l~~~~~~~~iIl~SAT~~-~~~l~~~~~~~~---vi~--v~gr~~pv~~~ 277 (773)
T 2xau_A 209 YSCIILDEAHE----RTLATDILMGLL-KQVVKRRPDLKIIIMSATLD-AEKFQRYFNDAP---LLA--VPGRTYPVELY 277 (773)
T ss_dssp EEEEEECSGGG----CCHHHHHHHHHH-HHHHHHCTTCEEEEEESCSC-CHHHHHHTTSCC---EEE--CCCCCCCEEEE
T ss_pred CCEEEecCccc----cccchHHHHHHH-HHHHHhCCCceEEEEecccc-HHHHHHHhcCCC---ccc--ccCcccceEEE
Confidence 88999999994 222222222222 22223346789999999994 688999987532 333 33456677777
Q ss_pred EEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhh
Q psy14582 889 YIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQ 968 (1689)
Q Consensus 889 ~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~ 968 (1689)
+.......... .....+.. +.....++++||||++++++..++..|....... . .
T Consensus 278 ~~~~~~~~~~~---~~l~~l~~-~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l------~--------------~- 332 (773)
T 2xau_A 278 YTPEFQRDYLD---SAIRTVLQ-IHATEEAGDILLFLTGEDEIEDAVRKISLEGDQL------V--------------R- 332 (773)
T ss_dssp CCSSCCSCHHH---HHHHHHHH-HHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHH------H--------------H-
T ss_pred EecCCchhHHH---HHHHHHHH-HHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhh------c--------------c-
Confidence 66554433221 11122222 2223357899999999999999999987532110 0 0
Q ss_pred ccchhhhcccCCceeEeccCCCHHHHHHHHHHHh-----cCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceE
Q psy14582 969 VKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFA-----DRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQV 1043 (1689)
Q Consensus 969 ~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~-----~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~v 1043 (1689)
-.......+..|||+|++.+|..+++.|+ +|.++|||||+++++|||||+|++|
T Consensus 333 -----~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~V---------------- 391 (773)
T 2xau_A 333 -----EEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYV---------------- 391 (773)
T ss_dssp -----HHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEE----------------
T ss_pred -----cccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEE----------------
Confidence 00112345889999999999999999999 9999999999999999999999998
Q ss_pred EEEcccccccCCCCCceEEEeceeeecCCCCcce----ecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhh
Q psy14582 1044 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWV----ELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLN 1119 (1689)
Q Consensus 1044 LVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~----~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 1119 (1689)
|-+. + ..+..||+..|... +.|..+|+||+|||||. ..|.|+++++..+. ...+..
T Consensus 392 -Id~g-------~-------~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~--~~~l~~ 451 (773)
T 2xau_A 392 -VDPG-------F-------SKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF--QKELIE 451 (773)
T ss_dssp -EECS-------E-------EEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH--HHTSCS
T ss_pred -EeCC-------C-------ccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh--cccccc
Confidence 4322 1 12367999887443 88999999999999998 58999999865331 122222
Q ss_pred CcCCcccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCChhhhhhhHHHHHHHHHHH
Q psy14582 1120 HQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHL 1199 (1689)
Q Consensus 1120 ~~~pieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~~lv~~al~~L 1199 (1689)
.+ ..||....+.+. ++....+ |+. ++...+++.....+.+..|+..|
T Consensus 452 ~~---------------~pEi~r~~L~~~--~L~l~~~--------------gi~--~~~~f~~~~~p~~~~i~~a~~~L 498 (773)
T 2xau_A 452 QS---------------YPEILRSNLSST--VLELKKL--------------GID--DLVHFDFMDPPAPETMMRALEEL 498 (773)
T ss_dssp SC---------------CCGGGGSCCHHH--HHHHHHT--------------TCC--CGGGCCCSSCCCHHHHHHHHHHH
T ss_pred cC---------------CCccccCcHHHH--HHHHHHc--------------CCC--ChhhccccCCCcHHHHHHHHHHH
Confidence 22 223322222111 1111111 110 00011122233446789999999
Q ss_pred HHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCChHHH
Q psy14582 1200 ERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEK 1269 (1689)
Q Consensus 1200 ~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~~E~ 1269 (1689)
...|+|+.+ | .+|++|+++|.||++|.+++++.......| ..+++.|+|+-+ +.++.+|..++
T Consensus 499 ~~lgald~~---~--~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c-~~~~l~i~a~ls-~~~~f~~~~~~ 561 (773)
T 2xau_A 499 NYLACLDDE---G--NLTPLGRLASQFPLDPMLAVMLIGSFEFQC-SQEILTIVAMLS-VPNVFIRPTKD 561 (773)
T ss_dssp HHTTSBCTT---S--CBCHHHHHHTTSSSCHHHHHHHHHGGGGTC-HHHHHHHHHHHT-SCCCBCCCTTC
T ss_pred HHcCCcccC---C--CcChhhhhhccccCCHHHHHHHHhhcccCc-hhHHHHHHHhcc-cCCcccCChHH
Confidence 999999632 2 589999999999999999999998876555 446676666654 35555555443
No 24
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.4e-32 Score=349.92 Aligned_cols=210 Identities=22% Similarity=0.323 Sum_probs=152.7
Q ss_pred hhccccCCceeecC---CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCH--HHHHHHhhcCCCccEEEecCCCccc
Q psy14582 809 VGNFGKDEIHLLHD---ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNY--KDVATLLRIKPETGLFYFDNSFRPV 883 (1689)
Q Consensus 809 v~liIiDEiHll~d---~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~--~dva~~L~~~~~~~~~~f~~~~Rpv 883 (1689)
++++|+||+|.+.+ ...+.+..+ .++ ....+++++++||||+++. .++..+++.... ........||
T Consensus 140 ~~~vViDEaH~i~~~g~~fr~~~~~l-~~l----~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~--~~~~~~~~r~- 211 (523)
T 1oyw_A 140 PVLLAVDEAHCISQWGHDFRPEYAAL-GQL----RQRFPTLPFMALTATADDTTRQDIVRLLGLNDP--LIQISSFDRP- 211 (523)
T ss_dssp EEEEEESSGGGGCTTSSCCCHHHHGG-GGH----HHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSC--EEEECCCCCT-
T ss_pred CCEEEEeCccccCcCCCccHHHHHHH-HHH----HHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCC--eEEeCCCCCC-
Confidence 78999999999964 122333222 111 1234578999999999953 778889976532 2333333344
Q ss_pred ceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHH
Q psy14582 884 ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLR 963 (1689)
Q Consensus 884 pL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~ 963 (1689)
++...+... .... . .+...+ ....++++||||+|++.++.++..|...
T Consensus 212 ~l~~~v~~~--~~~~---~----~l~~~l-~~~~~~~~IVf~~sr~~~e~l~~~L~~~---------------------- 259 (523)
T 1oyw_A 212 NIRYMLMEK--FKPL---D----QLMRYV-QEQRGKSGIIYCNSRAKVEDTAARLQSK---------------------- 259 (523)
T ss_dssp TEEEEEEEC--SSHH---H----HHHHHH-HHTTTCCEEEECSSHHHHHHHHHHHHHT----------------------
T ss_pred ceEEEEEeC--CCHH---H----HHHHHH-HhcCCCcEEEEeCCHHHHHHHHHHHHHC----------------------
Confidence 443333322 1111 1 122222 2235679999999999999999998752
Q ss_pred HhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceE
Q psy14582 964 TEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQV 1043 (1689)
Q Consensus 964 ~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~v 1043 (1689)
...++.|||+|++.+|..+++.|++|.++|||||+++++|||+|+|++|
T Consensus 260 ---------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~V---------------- 308 (523)
T 1oyw_A 260 ---------------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFV---------------- 308 (523)
T ss_dssp ---------------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEE----------------
T ss_pred ---------------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEE----------------
Confidence 2347788999999999999999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhC
Q psy14582 1044 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNH 1120 (1689)
Q Consensus 1044 LVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 1120 (1689)
| .+++| .|+.+|.||+|||||.| ..|.++++.+..+...+..++.+
T Consensus 309 -I-------~~~~p---------------------~s~~~y~Qr~GRaGR~g--~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 309 -V-------HFDIP---------------------RNIESYYQETGRAGRDG--LPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp -E-------ESSCC---------------------SSHHHHHHHHTTSCTTS--SCEEEEEEECHHHHHHHHHHHHT
T ss_pred -E-------EECCC---------------------CCHHHHHHHhccccCCC--CCceEEEEeCHHHHHHHHHHHhc
Confidence 3 23333 35899999999999998 78999999998888888877775
No 25
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.2e-32 Score=330.20 Aligned_cols=335 Identities=21% Similarity=0.353 Sum_probs=228.5
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|++.+..++. ||.+|+|+|.++++.++..+++++++||||||||++|++|++..+... .+.+++|++|
T Consensus 12 ~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---------~~~~~lil~P 82 (367)
T 1hv8_A 12 NLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---------NGIEAIILTP 82 (367)
T ss_dssp SCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---------SSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---------CCCcEEEEcC
Confidence 57888888886 999999999999999995447999999999999999999998876532 3568999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
|++|+.|+.+.+.+.. ......+..+.+
T Consensus 83 ~~~L~~q~~~~~~~~~-------------------------~~~~~~v~~~~~--------------------------- 110 (367)
T 1hv8_A 83 TRELAIQVADEIESLK-------------------------GNKNLKIAKIYG--------------------------- 110 (367)
T ss_dssp CHHHHHHHHHHHHHHH-------------------------CSSCCCEEEECT---------------------------
T ss_pred CHHHHHHHHHHHHHHh-------------------------CCCCceEEEEEC---------------------------
Confidence 9999999986553311 000111111100
Q ss_pred ccccceeEEEEechhhHHH--HHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCC
Q psy14582 625 RPVALEQQYIGVTEKKALK--RFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDS 702 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~ 702 (1689)
..... .... ..++|+|+| |+ .+.....
T Consensus 111 --------------~~~~~~~~~~~-------------~~~~iiv~T--------~~-~l~~~~~--------------- 139 (367)
T 1hv8_A 111 --------------GKAIYPQIKAL-------------KNANIVVGT--------PG-RILDHIN--------------- 139 (367)
T ss_dssp --------------TSCHHHHHHHH-------------HTCSEEEEC--------HH-HHHHHHH---------------
T ss_pred --------------CcchHHHHhhc-------------CCCCEEEec--------HH-HHHHHHH---------------
Confidence 11000 0111 167899999 88 2211110
Q ss_pred CcccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcc
Q psy14582 703 EVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHI 782 (1689)
Q Consensus 703 ~~il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~ 782 (1689)
.+. .
T Consensus 140 -----------------------------------------------------------~~~-----------------~ 143 (367)
T 1hv8_A 140 -----------------------------------------------------------RGT-----------------L 143 (367)
T ss_dssp -----------------------------------------------------------TTC-----------------S
T ss_pred -----------------------------------------------------------cCC-----------------c
Confidence 000 0
Q ss_pred ccCCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCH-HH
Q psy14582 783 NADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNY-KD 860 (1689)
Q Consensus 783 ~~~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~-~d 860 (1689)
.. ..++++|+||+|.+.+ .....+..+ ........+++++|||+++. .+
T Consensus 144 ~~----------------------~~~~~iIiDEah~~~~~~~~~~~~~~-------~~~~~~~~~~i~~SAT~~~~~~~ 194 (367)
T 1hv8_A 144 NL----------------------KNVKYFILDEADEMLNMGFIKDVEKI-------LNACNKDKRILLFSATMPREILN 194 (367)
T ss_dssp CT----------------------TSCCEEEEETHHHHHTTTTHHHHHHH-------HHTSCSSCEEEEECSSCCHHHHH
T ss_pred cc----------------------ccCCEEEEeCchHhhhhchHHHHHHH-------HHhCCCCceEEEEeeccCHHHHH
Confidence 00 0078999999998865 333332222 23456789999999999942 22
Q ss_pred -HHHHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHH
Q psy14582 861 -VATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIR 939 (1689)
Q Consensus 861 -va~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~ 939 (1689)
+..+++. ..+. ....+.++.+.+.......... .+. . ++. ..+.++||||++++.+..++..|.
T Consensus 195 ~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~---~l~----~-~l~-~~~~~~lvf~~~~~~~~~l~~~L~ 259 (367)
T 1hv8_A 195 LAKKYMGD----YSFI--KAKINANIEQSYVEVNENERFE---ALC----R-LLK-NKEFYGLVFCKTKRDTKELASMLR 259 (367)
T ss_dssp HHHHHCCS----EEEE--ECCSSSSSEEEEEECCGGGHHH---HHH----H-HHC-STTCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHcCC----CeEE--EecCCCCceEEEEEeChHHHHH---HHH----H-HHh-cCCCcEEEEECCHHHHHHHHHHHH
Confidence 2333321 1111 1222335566666655443322 111 1 111 346789999999999999999886
Q ss_pred HhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCC
Q psy14582 940 DMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGV 1019 (1689)
Q Consensus 940 ~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGI 1019 (1689)
.. ..++..+||+++..+|..+++.|++|..+|||||+++++|+
T Consensus 260 ~~-------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 302 (367)
T 1hv8_A 260 DI-------------------------------------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGI 302 (367)
T ss_dssp HT-------------------------------------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHC
T ss_pred hc-------------------------------------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCC
Confidence 52 23577889999999999999999999999999999999999
Q ss_pred CCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCc
Q psy14582 1020 NLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTK 1099 (1689)
Q Consensus 1020 DIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~ 1099 (1689)
|+|++++| |. |++ +.++.+|+||+|||||.| ..
T Consensus 303 d~~~~~~V-----------------i~----------------------~~~------~~s~~~~~Q~~GR~~R~g--~~ 335 (367)
T 1hv8_A 303 DVNDLNCV-----------------IN----------------------YHL------PQNPESYMHRIGRTGRAG--KK 335 (367)
T ss_dssp CCSCCSEE-----------------EE----------------------SSC------CSCHHHHHHHSTTTCCSS--SC
T ss_pred CcccCCEE-----------------EE----------------------ecC------CCCHHHhhhcccccccCC--Cc
Confidence 99999998 32 222 246899999999999998 78
Q ss_pred cEEEEEecCCcHHHHHHH
Q psy14582 1100 GEGVLITNHSELQYYLSL 1117 (1689)
Q Consensus 1100 G~~iil~~~~~~~~y~~l 1117 (1689)
|.++++++..+...+..+
T Consensus 336 g~~~~~~~~~~~~~~~~i 353 (367)
T 1hv8_A 336 GKAISIINRREYKKLRYI 353 (367)
T ss_dssp CEEEEEECTTSHHHHHHH
T ss_pred cEEEEEEcHHHHHHHHHH
Confidence 999999998877655543
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.98 E-value=1.7e-33 Score=345.17 Aligned_cols=342 Identities=18% Similarity=0.285 Sum_probs=121.3
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|++.+.+.+. ||.+|+|+|.++++.++ .|+|++++||||||||++|++|++..+... ..+.+++|++|
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~--------~~~~~~lil~P 97 (394)
T 1fuu_A 27 ELDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDTS--------VKAPQALMLAP 97 (394)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-HTCCEEECCCSSHHHHHHHHHHHHHHCCTT--------CCSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhhcc--------CCCCCEEEEcC
Confidence 57888888886 99999999999999888 789999999999999999999999887532 13468999999
Q ss_pred chhhhHhhhhcccccchhhccCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCC
Q psy14582 545 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF 624 (1689)
Q Consensus 545 treLa~Qi~~~f~kde~hll~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~ 624 (1689)
|++|+.|+...+.+-.. .....+..+.+..
T Consensus 98 ~~~L~~q~~~~~~~~~~-------------------------~~~~~~~~~~g~~------------------------- 127 (394)
T 1fuu_A 98 TRELALQIQKVVMALAF-------------------------HMDIKVHACIGGT------------------------- 127 (394)
T ss_dssp SHHHHHHHHHHHHHHTT-------------------------TSCCCEEEECSSC-------------------------
T ss_pred CHHHHHHHHHHHHHHhc-------------------------cCCeeEEEEeCCC-------------------------
Confidence 99999999865533110 0011111111100
Q ss_pred ccccceeEEEEechhhHHHHHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCc
Q psy14582 625 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEV 704 (1689)
Q Consensus 625 r~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~ 704 (1689)
.......... .++|+|+| |+..++...++
T Consensus 128 --------------~~~~~~~~~~-------------~~~i~v~T--------~~~l~~~~~~~---------------- 156 (394)
T 1fuu_A 128 --------------SFVEDAEGLR-------------DAQIVVGT--------PGRVFDNIQRR---------------- 156 (394)
T ss_dssp --------------CHHHHHHHHH-------------HCSEEEEC--------HHHHHHHHHTT----------------
T ss_pred --------------chHHHHhhcC-------------CCCEEEEC--------HHHHHHHHHhC----------------
Confidence 0000001111 57899999 88222221110
Q ss_pred ccchhhhhhhccccCCcceeEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhcccc
Q psy14582 705 VLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINA 784 (1689)
Q Consensus 705 il~~e~~~l~~~~~~~~~~~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~ 784 (1689)
....
T Consensus 157 ----------------------------------------------------------------------------~~~~ 160 (394)
T 1fuu_A 157 ----------------------------------------------------------------------------RFRT 160 (394)
T ss_dssp ----------------------------------------------------------------------------SSCC
T ss_pred ----------------------------------------------------------------------------Ccch
Confidence 0000
Q ss_pred CCCcCCCCcEEEEEccchhHHHHHhhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCC-HHHHH
Q psy14582 785 DGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN-YKDVA 862 (1689)
Q Consensus 785 ~~~i~~~~~kvVylaP~r~L~~q~v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dva 862 (1689)
..++++|+||+|.+.+ .....+..++ ....+..+++++|||+++ ..++.
T Consensus 161 ----------------------~~~~~vIiDEah~~~~~~~~~~~~~~~-------~~~~~~~~~i~~SAT~~~~~~~~~ 211 (394)
T 1fuu_A 161 ----------------------DKIKMFILDEADEMLSSGFKEQIYQIF-------TLLPPTTQVVLLSATMPNDVLEVT 211 (394)
T ss_dssp ----------------------TTCCEEEEETHHHHHHTTCHHHHHHHH-------HHSCTTCEEEEECSSCCHHHHHHH
T ss_pred ----------------------hhCcEEEEEChHHhhCCCcHHHHHHHH-------HhCCCCceEEEEEEecCHHHHHHH
Confidence 0078999999998865 4444444332 234678899999999994 23333
Q ss_pred -HHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHh
Q psy14582 863 -TLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDM 941 (1689)
Q Consensus 863 -~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~ 941 (1689)
.++. .+.. +........+..+.+.+..+..... ... ....+......+++||||++++.+..++..|...
T Consensus 212 ~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~ 282 (394)
T 1fuu_A 212 TKFMR-NPVR-ILVKKDELTLEGIKQFYVNVEEEEY--KYE-----CLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND 282 (394)
T ss_dssp HHHCC-SCEE-EEECC----------------------------------------------------------------
T ss_pred HHhcC-CCeE-EEecCccccCCCceEEEEEcCchhh--HHH-----HHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc
Confidence 3333 2211 1111112222223333333322110 111 1112223334678999999999999998887642
Q ss_pred hhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCC
Q psy14582 942 CLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNL 1021 (1689)
Q Consensus 942 ~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDI 1021 (1689)
..++..+||+|+..+|..+++.|++|..+|||||+++++|+|+
T Consensus 283 -------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi 325 (394)
T 1fuu_A 283 -------------------------------------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCc
Confidence 1245677999999999999999999999999999999999999
Q ss_pred CCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1022 PAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1022 p~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
|++++| | . |++ +.++.+|+||+|||||.| ..|.
T Consensus 326 ~~~~~V-----------------i-------~---------------~~~------p~s~~~~~Qr~GR~~R~g--~~g~ 358 (394)
T 1fuu_A 326 QQVSLV-----------------I-------N---------------YDL------PANKENYIHRIGRGGRFG--RKGV 358 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCEE-----------------E-------E---------------eCC------CCCHHHHHHHcCcccCCC--CCce
Confidence 999988 3 1 222 235779999999999998 7899
Q ss_pred EEEEecCCcHHHHHH
Q psy14582 1102 GVLITNHSELQYYLS 1116 (1689)
Q Consensus 1102 ~iil~~~~~~~~y~~ 1116 (1689)
++++++..+...+..
T Consensus 359 ~~~~~~~~~~~~~~~ 373 (394)
T 1fuu_A 359 AINFVTNEDVGAMRE 373 (394)
T ss_dssp ---------------
T ss_pred EEEEEchhHHHHHHH
Confidence 999998877554443
No 27
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.98 E-value=1e-31 Score=322.10 Aligned_cols=197 Identities=18% Similarity=0.237 Sum_probs=139.6
Q ss_pred hhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCH--HHHHHHhhcCCCccEEEecCCCcccce
Q psy14582 809 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNY--KDVATLLRIKPETGLFYFDNSFRPVAL 885 (1689)
Q Consensus 809 v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~--~dva~~L~~~~~~~~~~f~~~~RpvpL 885 (1689)
++++|+||+|.+.+ .....+..++ .......+++++|||+++. +.+..++... . .......+.++
T Consensus 130 ~~~iViDEah~~~~~~~~~~~~~~~-------~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~ 197 (337)
T 2z0m_A 130 FEIVIIDEADLMFEMGFIDDIKIIL-------AQTSNRKITGLFSATIPEEIRKVVKDFITNY----E-EIEACIGLANV 197 (337)
T ss_dssp CSEEEEESHHHHHHTTCHHHHHHHH-------HHCTTCSEEEEEESCCCHHHHHHHHHHSCSC----E-EEECSGGGGGE
T ss_pred CcEEEEEChHHhhccccHHHHHHHH-------hhCCcccEEEEEeCcCCHHHHHHHHHhcCCc----e-eeecccccCCc
Confidence 78999999999865 4444444333 2345678899999999942 2344444321 1 22233344456
Q ss_pred EEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHh
Q psy14582 886 EQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTE 965 (1689)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~ 965 (1689)
.+.+..+....... .. ......++++||||++++.+..++..|.
T Consensus 198 ~~~~~~~~~~~~~~---------~~-~~~~~~~~~~lvf~~~~~~~~~l~~~l~-------------------------- 241 (337)
T 2z0m_A 198 EHKFVHVKDDWRSK---------VQ-ALRENKDKGVIVFVRTRNRVAKLVRLFD-------------------------- 241 (337)
T ss_dssp EEEEEECSSSSHHH---------HH-HHHTCCCSSEEEECSCHHHHHHHHTTCT--------------------------
T ss_pred eEEEEEeChHHHHH---------HH-HHHhCCCCcEEEEEcCHHHHHHHHHHhh--------------------------
Confidence 66666555432211 11 2233456899999999999887665432
Q ss_pred hhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEE
Q psy14582 966 ADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLV 1045 (1689)
Q Consensus 966 ~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLV 1045 (1689)
.+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++| |
T Consensus 242 ---------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V-----------------i 289 (337)
T 2z0m_A 242 ---------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKV-----------------I 289 (337)
T ss_dssp ---------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEE-----------------E
T ss_pred ---------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEE-----------------E
Confidence 34567999999999999999999999999999999999999999988 3
Q ss_pred EcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHH
Q psy14582 1046 STATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLS 1116 (1689)
Q Consensus 1046 aT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 1116 (1689)
. |++ +.++.+|+||+|||||.| ..|.++++.. .+......
T Consensus 290 ~----------------------~~~------~~s~~~~~Q~~GR~gR~g--~~g~~~~~~~-~~~~~~~~ 329 (337)
T 2z0m_A 290 N----------------------FDA------PQDLRTYIHRIGRTGRMG--RKGEAITFIL-NEYWLEKE 329 (337)
T ss_dssp E----------------------SSC------CSSHHHHHHHHTTBCGGG--CCEEEEEEES-SCHHHHHH
T ss_pred E----------------------ecC------CCCHHHhhHhcCccccCC--CCceEEEEEe-CcHHHHHH
Confidence 2 332 246899999999999998 7899999998 55555444
No 28
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.98 E-value=1.8e-33 Score=357.66 Aligned_cols=210 Identities=18% Similarity=0.251 Sum_probs=123.7
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
+++||+||+|.+.+..+.. .+..........+.+++++|||+++ .+.+..++...+.. +........+..+.+
T Consensus 260 ~~lIIiDEaH~~~~~~~~~-----~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~ 333 (508)
T 3fho_A 260 IKVFVLDEADNMLDQQGLG-----DQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANE-IRLKTEELSVEGIKQ 333 (508)
T ss_dssp CCEEEECCHHHHTTC--CH-----HHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEE-ECCCCCC----CCCC
T ss_pred CCEEEEechhhhcccCCcH-----HHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeE-EEeccccCCcccceE
Confidence 7899999999987643311 1111223345668999999999996 66777766654321 111112222223444
Q ss_pred EEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhh
Q psy14582 888 QYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAD 967 (1689)
Q Consensus 888 ~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~ 967 (1689)
.+........ ... ....+.....++++||||++++.+..++..|...
T Consensus 334 ~~~~~~~~~~--k~~-----~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~-------------------------- 380 (508)
T 3fho_A 334 LYMDCQSEEH--KYN-----VLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD-------------------------- 380 (508)
T ss_dssp EEEEC--CHH--HHH-----HHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTT--------------------------
T ss_pred EEEECCchHH--HHH-----HHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhC--------------------------
Confidence 4444322211 111 1112333345689999999999999998877531
Q ss_pred hccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEc
Q psy14582 968 QVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVST 1047 (1689)
Q Consensus 968 ~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT 1047 (1689)
..++++|||+|+..+|..+++.|++|.++|||||+++++|+|+|++++| |
T Consensus 381 -----------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~V-----------------I-- 430 (508)
T 3fho_A 381 -----------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLV-----------------V-- 430 (508)
T ss_dssp -----------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEE-----------------E--
T ss_pred -----------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEE-----------------E--
Confidence 2467889999999999999999999999999999999999999999998 3
Q ss_pred ccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCC
Q psy14582 1048 ATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS 1109 (1689)
Q Consensus 1048 ~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~ 1109 (1689)
.+++| ..+....++.+|+||+|||||.| ..|.+++++...
T Consensus 431 -----~~~~p---------------~~~~~~~s~~~~~Qr~GRagR~g--~~g~~i~l~~~~ 470 (508)
T 3fho_A 431 -----NYDMP---------------LDQAGRPDPQTYLHRIGRTGRFG--RVGVSINFVHDK 470 (508)
T ss_dssp -----C-------------------CC-----CTHHHHHTTSCCC-------CEEEEEECTT
T ss_pred -----EECCC---------------CcccCCCCHHHHHHHhhhcCCCC--CCcEEEEEEeCh
Confidence 12223 22222357889999999999998 789999998754
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=7.9e-31 Score=324.95 Aligned_cols=77 Identities=23% Similarity=0.340 Sum_probs=64.0
Q ss_pred ccHHHHHhccCCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchh
Q psy14582 468 LPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS 547 (1689)
Q Consensus 468 Lp~~~~~~f~g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtre 547 (1689)
+.+++++.+ || +|+|+|.++++.++ .|+|++++||||||||++|++|++..+. .+.+++|++|||+
T Consensus 10 ~~~~l~~~~-~~-~~~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~l~~~~~~~~-----------~~~~~lil~Pt~~ 75 (414)
T 3oiy_A 10 FRSFFKKKF-GK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVT 75 (414)
T ss_dssp HHHHHHHHH-SS-CCCHHHHHHHHHHT-TTCCEECCSCSSSSHHHHHHHHHHHHHT-----------TTCCEEEEESSHH
T ss_pred HHHHHHHhc-CC-CCCHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHhc-----------CCCEEEEEECCHH
Confidence 344555555 66 79999999999988 7899999999999999999999887662 3458999999999
Q ss_pred hhHhhhhcccc
Q psy14582 548 LVQEMVGNFGK 558 (1689)
Q Consensus 548 La~Qi~~~f~k 558 (1689)
||.|++..+.+
T Consensus 76 L~~q~~~~~~~ 86 (414)
T 3oiy_A 76 LVKQTLERLQK 86 (414)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999966643
No 30
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.96 E-value=1e-28 Score=317.06 Aligned_cols=122 Identities=20% Similarity=0.328 Sum_probs=53.8
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHH
Q psy14582 916 AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRT 995 (1689)
Q Consensus 916 ~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~ 995 (1689)
..++++||||+++..+..++..|.....-.. + ....+...+...+||+|++.+|.
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~-----~--------------------~~~~~~g~~~~~~~~~~~~~~R~ 442 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNY-----I--------------------KPGVLMGRGRRDQTTGMTLPSQK 442 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGS-----C--------------------CEEC-------------------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcce-----e--------------------eeeEEEccCCcccccccCHHHHH
Confidence 3468999999999999999998865210000 0 00112334556779999999999
Q ss_pred HHHHHHhc-CCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCC
Q psy14582 996 LVEDLFAD-RHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 1074 (1689)
Q Consensus 996 ~ve~~F~~-g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~ 1074 (1689)
.+++.|++ |.++|||||+++++|||+|+|++| | .||+.
T Consensus 443 ~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~V-----------------I----------------------~~d~p-- 481 (556)
T 4a2p_A 443 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLV-----------------V----------------------LYEYS-- 481 (556)
T ss_dssp -----------CCEEEEEC-----------CEE-----------------E----------------------EETCC--
T ss_pred HHHHHhcccCceEEEEEcCchhcCCCchhCCEE-----------------E----------------------EeCCC--
Confidence 99999999 999999999999999999999998 3 35543
Q ss_pred cceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcH
Q psy14582 1075 RWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL 1111 (1689)
Q Consensus 1075 ~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~ 1111 (1689)
.++.+|+||+|| ||. ..|.++++++..+.
T Consensus 482 ----~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 482 ----GNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 510 (556)
T ss_dssp ----SCHHHHHHC------------CCEEEEESCHHH
T ss_pred ----CCHHHHHHhcCC-CCC---CCceEEEEEeCcch
Confidence 469999999999 997 57999999887654
No 31
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.96 E-value=1.5e-28 Score=315.05 Aligned_cols=122 Identities=19% Similarity=0.253 Sum_probs=73.2
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
..+++||||+++..+..++..|...+...... ...+...|...+||+|++.+|..
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~-------------------------~~~~~g~~~~~~~~~~~~~~R~~ 442 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLK-------------------------PGILTGRGRTNRATGMTLPAQKC 442 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCC-------------------------EEECCC-----------------
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCcee-------------------------eeEEEecCCcccccccCHHHHHH
Confidence 45899999999999999999998743211100 01123346677899999999999
Q ss_pred HHHHHhc-CCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCc
Q psy14582 997 VEDLFAD-RHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGR 1075 (1689)
Q Consensus 997 ve~~F~~-g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~ 1075 (1689)
+++.|++ |.++|||||+++++|||+|++++| | .||+.
T Consensus 443 ~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~V-----------------I----------------------~~d~p--- 480 (555)
T 3tbk_A 443 VLEAFRASGDNNILIATSVADEGIDIAECNLV-----------------I----------------------LYEYV--- 480 (555)
T ss_dssp ---------CCSEEEECCCTTCCEETTSCSEE-----------------E----------------------EESCC---
T ss_pred HHHHHhcCCCeeEEEEcchhhcCCccccCCEE-----------------E----------------------EeCCC---
Confidence 9999999 999999999999999999999998 3 24432
Q ss_pred ceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHH
Q psy14582 1076 WVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQ 1112 (1689)
Q Consensus 1076 ~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~ 1112 (1689)
.++.+|+||+|| ||. ..|.++++++..+..
T Consensus 481 ---~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 481 ---GNVIKMIQTRGR-GRA---RDSKCFLLTSSADVI 510 (555)
T ss_dssp ---SSCCCEECSSCC-CTT---TSCEEEEEESCHHHH
T ss_pred ---CCHHHHHHhcCc-CcC---CCceEEEEEcCCCHH
Confidence 246688999999 886 589999999876543
No 32
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.95 E-value=3.8e-28 Score=320.85 Aligned_cols=121 Identities=20% Similarity=0.262 Sum_probs=59.2
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.++++||||+++..+..++..|...+.... + ....+...|...+||+|++.+|..
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~-~------------------------~~~~l~G~~~~~~h~~~~~~eR~~ 451 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSF-L------------------------KPGILTGRGKTNQNTGMTLPAQKC 451 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCS-C------------------------CEEC--------------------
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccc-c------------------------ceeEEEccCCCccccCCCHHHHHH
Confidence 467899999999999999999987431000 0 000112334556699999999999
Q ss_pred HHHHHhc-CCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCc
Q psy14582 997 VEDLFAD-RHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGR 1075 (1689)
Q Consensus 997 ve~~F~~-g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~ 1075 (1689)
+++.|++ |.++|||||+++++|||+|+|++| | .||+.
T Consensus 452 v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~V-----------------I----------------------~~d~p--- 489 (696)
T 2ykg_A 452 ILDAFKASGDHNILIATSVADEGIDIAQCNLV-----------------I----------------------LYEYV--- 489 (696)
T ss_dssp ---------CCSCSEEEESSCCC---CCCSEE-----------------E----------------------EESCC---
T ss_pred HHHHHHhcCCccEEEEechhhcCCcCccCCEE-----------------E----------------------EeCCC---
Confidence 9999998 999999999999999999999999 3 24432
Q ss_pred ceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcH
Q psy14582 1076 WVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL 1111 (1689)
Q Consensus 1076 ~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~ 1111 (1689)
.++.+|+||+|| ||. ..|.++++++..+.
T Consensus 490 ---~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 490 ---GNVIKMIQTRGR-GRA---RGSKCFLLTSNAGV 518 (696)
T ss_dssp -----CCCC-------------CCCEEEEEESCHHH
T ss_pred ---CCHHHHHHhhcc-CcC---CCceEEEEecCCCH
Confidence 235689999999 996 57999999987655
No 33
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.95 E-value=2e-27 Score=323.67 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=60.0
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
|| +|||+|.+++|.++ .|+|+|++||||||||++|++|++..+. .+.++||++|||+||.|++..|.
T Consensus 76 gf-~pt~iQ~~ai~~il-~g~dvlv~ApTGSGKTl~~l~~il~~~~-----------~~~~~Lil~PtreLa~Q~~~~l~ 142 (1104)
T 4ddu_A 76 GK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVTLVKQTLERLQ 142 (1104)
T ss_dssp SS-CCCHHHHHHHHHHT-TTCCEEECCSTTCCHHHHHHHHHHHHHT-----------TTCCEEEEESSHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHH-cCCCEEEEeCCCCcHHHHHHHHHHHHHh-----------cCCeEEEEechHHHHHHHHHHHH
Confidence 67 69999999999988 7999999999999999999999887763 34589999999999999997764
Q ss_pred c
Q psy14582 558 K 558 (1689)
Q Consensus 558 k 558 (1689)
+
T Consensus 143 ~ 143 (1104)
T 4ddu_A 143 K 143 (1104)
T ss_dssp T
T ss_pred H
Confidence 4
No 34
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.95 E-value=2.8e-28 Score=315.39 Aligned_cols=215 Identities=18% Similarity=0.201 Sum_probs=147.8
Q ss_pred hhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
++++|+||+|.+.+ .+|..++.++.++ ....++++++|||.+....++.+.+.. +.+....|+.++..
T Consensus 240 v~lvVIDEaH~l~d~~~g~~~~~~l~~l------~~~~i~il~~SAT~~~i~~l~~~~~~~-----~~v~~~~r~~~l~~ 308 (677)
T 3rc3_A 240 YEVAVIDEIQMIRDPARGWAWTRALLGL------CAEEVHLCGEPAAIDLVMELMYTTGEE-----VEVRDYKRLTPISV 308 (677)
T ss_dssp EEEEEECSGGGGGCTTTHHHHHHHHHHC------CEEEEEEEECGGGHHHHHHHHHHHTCC-----EEEEECCCSSCEEE
T ss_pred CCEEEEecceecCCccchHHHHHHHHcc------CccceEEEeccchHHHHHHHHHhcCCc-----eEEEEeeecchHHH
Confidence 78999999999987 6998888776553 236789999999987777777766432 22233345555543
Q ss_pred EEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhh
Q psy14582 888 QYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAD 967 (1689)
Q Consensus 888 ~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~ 967 (1689)
....+. .+ ... ....+|||+|+++++.++..|...
T Consensus 309 ~~~~l~-----------------~l-~~~-~~g~iIf~~s~~~ie~la~~L~~~-------------------------- 343 (677)
T 3rc3_A 309 LDHALE-----------------SL-DNL-RPGDCIVCFSKNDIYSVSRQIEIR-------------------------- 343 (677)
T ss_dssp CSSCCC-----------------SG-GGC-CTTEEEECSSHHHHHHHHHHHHHT--------------------------
T ss_pred HHHHHH-----------------HH-Hhc-CCCCEEEEcCHHHHHHHHHHHHhc--------------------------
Confidence 211110 00 111 244589999999999999988752
Q ss_pred hccchhhhcccCCceeEeccCCCHHHHHHHHHHHhc--CCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEE
Q psy14582 968 QVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFAD--RHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLV 1045 (1689)
Q Consensus 968 ~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~--g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLV 1045 (1689)
..++++|||+|++.+|..+++.|++ |.++|||||+++++|||+ ++++|
T Consensus 344 -----------g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~V------------------ 393 (677)
T 3rc3_A 344 -----------GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRI------------------ 393 (677)
T ss_dssp -----------TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEE------------------
T ss_pred -----------CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEE------------------
Confidence 2478899999999999999999999 999999777776666666 55555
Q ss_pred EcccccccCCCCCceEEEeceee--ecCCCC-cceecCHHHHHHHhcccCCCCCC-CccEEEEEecCCcHHHHHHHhh-C
Q psy14582 1046 STATLAWGVNLPAHTVIIKGTQI--YNPEKG-RWVELGALDVLQMLGRAGRPQYD-TKGEGVLITNHSELQYYLSLLN-H 1120 (1689)
Q Consensus 1046 aT~TLa~GvNLPa~~VII~gt~~--yd~~~~-~~~~~s~~d~lQm~GRAGR~g~d-~~G~~iil~~~~~~~~y~~ll~-~ 1120 (1689)
|+.|... ||+..+ +..+++..+|+||+|||||.|.+ ..|.+++++.. +...+.+++. .
T Consensus 394 ----------------I~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~~~~ 456 (677)
T 3rc3_A 394 ----------------IFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKEILKRP 456 (677)
T ss_dssp ----------------EESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHHHHHSC
T ss_pred ----------------EECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHHHHhcC
Confidence 5555544 343311 35588999999999999999965 35777666544 4556666555 4
Q ss_pred cCCccc
Q psy14582 1121 QLPVES 1126 (1689)
Q Consensus 1121 ~~pieS 1126 (1689)
..++++
T Consensus 457 ~~~i~~ 462 (677)
T 3rc3_A 457 VDPIRA 462 (677)
T ss_dssp CCCCCC
T ss_pred cchhhh
Confidence 456776
No 35
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.95 E-value=1.4e-27 Score=319.43 Aligned_cols=122 Identities=20% Similarity=0.328 Sum_probs=59.7
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHH
Q psy14582 916 AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRT 995 (1689)
Q Consensus 916 ~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~ 995 (1689)
..++++||||++++.+..++..|........ + ....+...+...+||+|++.+|.
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~-~------------------------~~~~l~G~~~~~~hg~~~~~eR~ 683 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNY-I------------------------KPGVLMGRGRRDQTTGMTLPSQK 683 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCS-C------------------------CCEEC------------------
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCccccc-c------------------------cceEEEecCCcccCCCCCHHHHH
Confidence 3458999999999999999998875210000 0 00112344566779999999999
Q ss_pred HHHHHHhc-CCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCC
Q psy14582 996 LVEDLFAD-RHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 1074 (1689)
Q Consensus 996 ~ve~~F~~-g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~ 1074 (1689)
.+++.|++ |.++|||||+++++|||+|+|++| | .||+.
T Consensus 684 ~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~V-----------------I----------------------~yd~p-- 722 (797)
T 4a2q_A 684 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLV-----------------V----------------------LYEYS-- 722 (797)
T ss_dssp ----------CCSEEEEECC-------CCCSEE-----------------E----------------------EESCC--
T ss_pred HHHHHhhccCCceEEEEcCchhcCCCchhCCEE-----------------E----------------------EeCCC--
Confidence 99999999 999999999999999999999998 3 35543
Q ss_pred cceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcH
Q psy14582 1075 RWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL 1111 (1689)
Q Consensus 1075 ~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~ 1111 (1689)
.++..|+||+|| ||. ..|.++++++..+.
T Consensus 723 ----~s~~~~iQr~GR-GR~---~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 723 ----GNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 751 (797)
T ss_dssp ----SCHHHHHTC-----------CCCEEEEECCHHH
T ss_pred ----CCHHHHHHhcCC-CCC---CCceEEEEEeCCcH
Confidence 469999999999 997 58999999987654
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.95 E-value=9.9e-28 Score=317.03 Aligned_cols=73 Identities=29% Similarity=0.454 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhh-hhcccc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM-VGNFGK 558 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi-~~~f~k 558 (1689)
.+|+|+|.++++.++ .|+|+|++||||||||++|++|++..+...... ..+.++|||+||++|+.|+ ...|.+
T Consensus 6 ~~l~~~Q~~~i~~il-~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----~~~~~vlvl~P~~~L~~Q~~~~~l~~ 79 (699)
T 4gl2_A 6 LQLRPYQMEVAQPAL-EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEFQP 79 (699)
T ss_dssp -CCCHHHHHHHHHHH-SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----TCCCCBCCEESCSHHHHHHHHHTHHH
T ss_pred CCccHHHHHHHHHHH-hCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----CCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 369999999999998 689999999999999999999999988754221 1235899999999999999 866644
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=7.8e-28 Score=315.64 Aligned_cols=202 Identities=21% Similarity=0.262 Sum_probs=120.1
Q ss_pred hhccccCCceeecC-CchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEE
Q psy14582 809 VGNFGKDEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQ 887 (1689)
Q Consensus 809 v~liIiDEiHll~d-~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~ 887 (1689)
++++|+||+|.++. .+.. +.......++++||||+.. +.++..+.......+....+..| .|+..
T Consensus 491 l~lVVIDEaHr~g~~qr~~------------l~~~~~~~~vL~mSATp~p-~tl~~~~~g~~~~s~i~~~p~~r-~~i~~ 556 (780)
T 1gm5_A 491 LGLVIIDEQHRFGVKQREA------------LMNKGKMVDTLVMSATPIP-RSMALAFYGDLDVTVIDEMPPGR-KEVQT 556 (780)
T ss_dssp CCEEEEESCCCC-----CC------------CCSSSSCCCEEEEESSCCC-HHHHHHHTCCSSCEEECCCCSSC-CCCEE
T ss_pred CceEEecccchhhHHHHHH------------HHHhCCCCCEEEEeCCCCH-HHHHHHHhCCcceeeeeccCCCC-cceEE
Confidence 78999999998754 2211 1123356899999999754 33333332222111111111111 23332
Q ss_pred EEEeechhhHHHHHHHhhHHHHHHHHHH-hCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhh
Q psy14582 888 QYIGVTEKKALKRFQVMNDIVYEKVMEH-AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEA 966 (1689)
Q Consensus 888 ~~~~~~~~~~~~~~~~m~~~~~~~i~~~-~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~ 966 (1689)
.+.. .... ..++..+.+. ..+++++|||++..+...+... ..+.+.
T Consensus 557 ~~~~--~~~~--------~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~--------------------~a~~l~--- 603 (780)
T 1gm5_A 557 MLVP--MDRV--------NEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVK--------------------SAVEMY--- 603 (780)
T ss_dssp CCCC--SSTH--------HHHHHHHHHHTTTSCCBCCBCCCC--------C--------------------HHHHHH---
T ss_pred EEec--cchH--------HHHHHHHHHHHhcCCcEEEEecchhhhhhhhHH--------------------HHHHHH---
Confidence 2221 1111 1223334333 3468999999987664322000 000000
Q ss_pred hhccchhhhc-cc-CCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEE
Q psy14582 967 DQVKNGELRD-LL-PYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVL 1044 (1689)
Q Consensus 967 ~~~~~~~L~~-~l-~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vL 1044 (1689)
..|.+ .+ ..+++++||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|
T Consensus 604 -----~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~V----------------- 661 (780)
T 1gm5_A 604 -----EYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVM----------------- 661 (780)
T ss_dssp -----HSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEE-----------------
T ss_pred -----HHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEE-----------------
Confidence 11222 22 3578999999999999999999999999999999999999999999988
Q ss_pred EEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecC
Q psy14582 1045 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNH 1108 (1689)
Q Consensus 1045 VaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~ 1108 (1689)
| .||+.. .+...+.||+|||||.| ..|.|++++++
T Consensus 662 I----------------------i~d~~r-----~~l~~l~Qr~GRaGR~g--~~g~~ill~~~ 696 (780)
T 1gm5_A 662 V----------------------IENPER-----FGLAQLHQLRGRVGRGG--QEAYCFLVVGD 696 (780)
T ss_dssp E----------------------BCSCSS-----SCTTHHHHHHHTSCCSS--TTCEEECCCCS
T ss_pred E----------------------EeCCCC-----CCHHHHHHHhcccCcCC--CCCEEEEEECC
Confidence 3 233321 24678999999999988 78999999874
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=2.7e-26 Score=314.47 Aligned_cols=196 Identities=20% Similarity=0.237 Sum_probs=133.2
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQ 888 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~ 888 (1689)
++++|+||+|.++. ..... +.....+.++++||||+..- .+...+.... .............++...
T Consensus 726 l~lvIiDEaH~~g~----~~~~~-------l~~l~~~~~vl~lSATp~p~-~l~~~~~~~~-~~~~i~~~~~~r~~i~~~ 792 (1151)
T 2eyq_A 726 LGLLIVDEEHRFGV----RHKER-------IKAMRANVDILTLTATPIPR-TLNMAMSGMR-DLSIIATPPARRLAVKTF 792 (1151)
T ss_dssp EEEEEEESGGGSCH----HHHHH-------HHHHHTTSEEEEEESSCCCH-HHHHHHTTTS-EEEECCCCCCBCBCEEEE
T ss_pred cceEEEechHhcCh----HHHHH-------HHHhcCCCCEEEEcCCCChh-hHHHHHhcCC-CceEEecCCCCccccEEE
Confidence 78999999998642 21111 22334578999999997632 2222222211 111111122222345544
Q ss_pred EEeechhhHHHHHHHhhHHHHHHHH-HHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhh
Q psy14582 889 YIGVTEKKALKRFQVMNDIVYEKVM-EHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAD 967 (1689)
Q Consensus 889 ~~~~~~~~~~~~~~~m~~~~~~~i~-~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~ 967 (1689)
+....... +...+. ....+++++|||++++.+..++..|....
T Consensus 793 ~~~~~~~~-----------i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~------------------------- 836 (1151)
T 2eyq_A 793 VREYDSMV-----------VREAILREILRGGQVYYLYNDVENIQKAAERLAELV------------------------- 836 (1151)
T ss_dssp EEECCHHH-----------HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHC-------------------------
T ss_pred EecCCHHH-----------HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC-------------------------
Confidence 44433211 111222 23457899999999999999999887531
Q ss_pred hccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEc
Q psy14582 968 QVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVST 1047 (1689)
Q Consensus 968 ~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT 1047 (1689)
-..+++++||+|++.+|..+++.|++|.++|||||+++++|+|+|++++| |.
T Consensus 837 ----------p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~V-----------------Ii- 888 (1151)
T 2eyq_A 837 ----------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI-----------------II- 888 (1151)
T ss_dssp ----------TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEE-----------------EE-
T ss_pred ----------CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEE-----------------EE-
Confidence 12468889999999999999999999999999999999999999999888 31
Q ss_pred ccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCC
Q psy14582 1048 ATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS 1109 (1689)
Q Consensus 1048 ~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~ 1109 (1689)
+++. .+++.+|.||+||+||.| ..|.|++++...
T Consensus 889 ---------------------~~~~-----~~~l~~l~Qr~GRvgR~g--~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 889 ---------------------ERAD-----HFGLAQLHQLRGRVGRSH--HQAYAWLLTPHP 922 (1151)
T ss_dssp ---------------------TTTT-----SSCHHHHHHHHTTCCBTT--BCEEEEEEECCG
T ss_pred ---------------------eCCC-----CCCHHHHHHHHhccCcCC--CceEEEEEECCc
Confidence 2211 245789999999999998 789999998764
No 39
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.94 E-value=6.6e-28 Score=328.71 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=98.8
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHH----HHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccc
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRN----IEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVA 884 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~----~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~Rpvp 884 (1689)
++++|+||+|.+.+ .|..++.++.++-.. ........+++++|||+++..+++.++...+.. +........+.+
T Consensus 176 l~~lViDEah~~l~-~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~-i~v~~~~~~~~~ 253 (1054)
T 1gku_B 176 FDFIFVDDVDAILK-ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN-FDIGSSRITVRN 253 (1054)
T ss_dssp CSEEEESCHHHHHT-STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC-CCCSCCEECCCC
T ss_pred CCEEEEeChhhhhh-ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE-EEccCcccCcCC
Confidence 88999999999887 677777776553100 011245678999999998544333332211100 000011112223
Q ss_pred eEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHH
Q psy14582 885 LEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRT 964 (1689)
Q Consensus 885 L~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~ 964 (1689)
+.+.+.... + .. . +. .++... ++++||||+|++.|..++..|...
T Consensus 254 i~~~~~~~~--k-~~---~----L~-~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~----------------------- 298 (1054)
T 1gku_B 254 VEDVAVNDE--S-IS---T----LS-SILEKL-GTGGIIYARTGEEAEEIYESLKNK----------------------- 298 (1054)
T ss_dssp EEEEEESCC--C-TT---T----TH-HHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-----------------------
T ss_pred ceEEEechh--H-HH---H----HH-HHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-----------------------
Confidence 555554211 1 11 1 11 122222 578999999999998888766431
Q ss_pred hhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEE----cchhccCCCCCCc-cee
Q psy14582 965 EADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVS----TATLAWGVNLPAH-TVV 1027 (1689)
Q Consensus 965 ~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVa----T~vl~rGIDIp~V-~~V 1027 (1689)
..++++||+| ..+++.|++|.++|||| |+++++|||+|+| ++|
T Consensus 299 ---------------~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~V 346 (1054)
T 1gku_B 299 ---------------FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFA 346 (1054)
T ss_dssp ---------------SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEE
T ss_pred ---------------cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEE
Confidence 3477889998 37888999999999999 9999999999996 999
No 40
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.94 E-value=1e-26 Score=314.55 Aligned_cols=121 Identities=21% Similarity=0.332 Sum_probs=60.0
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.++++||||++++.+..++..|.....-.. + ....+...+...+||+|+..+|..
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~-i------------------------k~~~l~G~~~~~~hg~m~~~eR~~ 684 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNY-I------------------------KPGVLMGRGRRDQTTGMTLPSQKG 684 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSS-C------------------------CCEEC-------------------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccc-c------------------------ceeEEecCCCcccCCCCCHHHHHH
Confidence 358999999999999999999876311000 0 001122345566799999999999
Q ss_pred HHHHHhc-CCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCc
Q psy14582 997 VEDLFAD-RHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGR 1075 (1689)
Q Consensus 997 ve~~F~~-g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~ 1075 (1689)
+++.|++ |.++|||||+++++|||+|+|++| | .||+.
T Consensus 685 il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~V-----------------I----------------------~yD~p--- 722 (936)
T 4a2w_A 685 VLDAFKTSKDNRLLIATSVADEGIDIVQCNLV-----------------V----------------------LYEYS--- 722 (936)
T ss_dssp ---------CCSEEEEECC------CCCCSEE-----------------E----------------------EESCC---
T ss_pred HHHHhhccCCeeEEEEeCchhcCCcchhCCEE-----------------E----------------------EeCCC---
Confidence 9999999 999999999999999999999998 2 35543
Q ss_pred ceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcH
Q psy14582 1076 WVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL 1111 (1689)
Q Consensus 1076 ~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~ 1111 (1689)
.++..|+||+|| ||. ..|.++++++....
T Consensus 723 ---~s~~~~iQr~GR-GR~---~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 723 ---GNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 751 (936)
T ss_dssp ---SCSHHHHCC-----------CCCEEEEESCHHH
T ss_pred ---CCHHHHHHhcCC-CCC---CCCEEEEEEeCCCH
Confidence 358899999999 997 57899999877544
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.94 E-value=5.5e-28 Score=311.81 Aligned_cols=196 Identities=13% Similarity=0.103 Sum_probs=123.8
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEE
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQ 888 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~ 888 (1689)
++++|+||+|.+.......+..+..++ ...+.|+++||||+++. +..+...++. .+.....
T Consensus 278 ~~~iViDEah~~~~~~~~~~~~i~~~l------~~~~~q~il~SAT~~~~--~~~~~~~~~~--~~~v~~~--------- 338 (618)
T 2whx_A 278 YNLIVMDEAHFTDPCSVAARGYISTRV------EMGEAAAIFMTATPPGS--TDPFPQSNSP--IEDIERE--------- 338 (618)
T ss_dssp CSEEEEESTTCCSHHHHHHHHHHHHHH------HHTSCEEEEECSSCTTC--CCSSCCCSSC--EEEEECC---------
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHh------cccCccEEEEECCCchh--hhhhhccCCc--eeeeccc---------
Confidence 889999999998324444555544332 12578999999999842 1112211110 1111110
Q ss_pred EEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhh
Q psy14582 889 YIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQ 968 (1689)
Q Consensus 889 ~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~ 968 (1689)
++.... .. ++..+.+ ..+++||||+|++.|+.++..|...+
T Consensus 339 ---~~~~~~----~~----ll~~l~~--~~~~~LVF~~s~~~a~~l~~~L~~~g-------------------------- 379 (618)
T 2whx_A 339 ---IPERSW----NT----GFDWITD--YQGKTVWFVPSIKAGNDIANCLRKSG-------------------------- 379 (618)
T ss_dssp ---CCSSCC----SS----SCHHHHH--CCSCEEEECSSHHHHHHHHHHHHHTT--------------------------
T ss_pred ---CCHHHH----HH----HHHHHHh--CCCCEEEEECChhHHHHHHHHHHHcC--------------------------
Confidence 011000 01 1112222 25799999999999999999987632
Q ss_pred ccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcc
Q psy14582 969 VKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTA 1048 (1689)
Q Consensus 969 ~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~ 1048 (1689)
..+..+|+. +|..+++.|++|.++|||||+++++|+|+| +++| |-+.
T Consensus 380 -----------~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~V-----------------Id~g 426 (618)
T 2whx_A 380 -----------KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRV-----------------IDPR 426 (618)
T ss_dssp -----------CCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEE-----------------EECC
T ss_pred -----------CcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEE-----------------EECc
Confidence 124556773 788899999999999999999999999997 8888 4332
Q ss_pred ccccc--C-CCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEec
Q psy14582 1049 TLAWG--V-NLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITN 1107 (1689)
Q Consensus 1049 TLa~G--v-NLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~ 1107 (1689)
.. +. + +-....++| .|| .+.+..+|+||+|||||.| ...|.++++.+
T Consensus 427 ~~-~~P~~~~~~~~~~~i----~~d------~P~s~~~yiQR~GRaGR~g-~~~G~ai~l~~ 476 (618)
T 2whx_A 427 RC-LKPVILTDGPERVIL----AGP------IPVTPASAAQRRGRIGRNP-AQEDDQYVFSG 476 (618)
T ss_dssp EE-EEEEEECSSSCEEEE----EEE------EECCHHHHHHHHTTSSCCT-TCCCEEEEECS
T ss_pred ce-ecceecccCCCceEE----ccc------ccCCHHHHHHhccccCCCC-CCCCeEEEEcc
Confidence 10 00 0 000111222 222 3578999999999999997 24799999986
No 42
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=1e-25 Score=282.51 Aligned_cols=111 Identities=23% Similarity=0.395 Sum_probs=88.5
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEecc--------
Q psy14582 916 AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHA-------- 987 (1689)
Q Consensus 916 ~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHa-------- 987 (1689)
..++++||||+++..+..++..|...+. .+..+||
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~-------------------------------------~~~~~~g~~~~~~~~ 401 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKDGI-------------------------------------KAKRFVGQASKENDR 401 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTC-------------------------------------CEEEECCSSCC----
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHcCC-------------------------------------CcEEEeccccccccc
Confidence 3578999999999999999998876421 2344466
Q ss_pred CCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEecee
Q psy14582 988 GMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQ 1067 (1689)
Q Consensus 988 gl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~ 1067 (1689)
+|+..+|..+++.|++|.++|||||+++++|+|+|++++| |
T Consensus 402 ~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~V-----------------i---------------------- 442 (494)
T 1wp9_A 402 GLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLV-----------------V---------------------- 442 (494)
T ss_dssp ---CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEE-----------------E----------------------
T ss_pred cCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEE-----------------E----------------------
Confidence 9999999999999999999999999999999999998888 3
Q ss_pred eecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcH
Q psy14582 1068 IYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL 1111 (1689)
Q Consensus 1068 ~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~ 1111 (1689)
.||+. .++..|.||+|||||.| . |.++++......
T Consensus 443 ~~d~~------~~~~~~~Qr~GR~~R~g--~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 443 FYEPV------PSAIRSIQRRGRTGRHM--P-GRVIILMAKGTR 477 (494)
T ss_dssp ESSCC------HHHHHHHHHHTTSCSCC--C-SEEEEEEETTSH
T ss_pred EeCCC------CCHHHHHHHHhhccCCC--C-ceEEEEEecCCH
Confidence 23332 35889999999999998 3 999998887654
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.94 E-value=4.5e-27 Score=294.28 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=57.3
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
|+..++|+|. ++|.++..+.++|++||||||||++|++|++..+.. .+.+++|++|||+||.|++..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~----------~~~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL----------RRLRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh----------cCCcEEEECCCHHHHHHHHHHh
Confidence 6889999985 799888444444999999999999999999987764 2358999999999999998655
No 44
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.93 E-value=7.5e-27 Score=291.11 Aligned_cols=119 Identities=17% Similarity=0.147 Sum_probs=80.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHH
Q psy14582 918 RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLV 997 (1689)
Q Consensus 918 ~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~v 997 (1689)
++++||||++++.+..++..|... ...++.+|| .+|..+
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-------------------------------------~~~v~~lhg----~~R~~~ 215 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-------------------------------------GKSVVVLNR----KTFERE 215 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-------------------------------------TCCEEECCS----SSCC--
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-------------------------------------CCCEEEecc----hhHHHH
Confidence 679999999999999999988753 123667788 468899
Q ss_pred HHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccc-cCCCCCceEEEeceeeecCCCCcc
Q psy14582 998 EDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAW-GVNLPAHTVIIKGTQIYNPEKGRW 1076 (1689)
Q Consensus 998 e~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~-GvNLPa~~VII~gt~~yd~~~~~~ 1076 (1689)
++.|++|.++|||||+++++|+|+| +++| |.+.+--. =++-+...++|. |+
T Consensus 216 ~~~F~~g~~~vLVaT~v~e~GiDip-v~~V-----------------I~~g~~~~pv~~~~~~~~vi~----~~------ 267 (440)
T 1yks_A 216 YPTIKQKKPDFILATDIAEMGANLC-VERV-----------------LDCRTAFKPVLVDEGRKVAIK----GP------ 267 (440)
T ss_dssp ------CCCSEEEESSSTTCCTTCC-CSEE-----------------EECCEEEEEEEETTTTEEEEE----EE------
T ss_pred HhhhcCCCceEEEECChhheeeccC-ceEE-----------------EeCCccceeeecccccceeec----cc------
Confidence 9999999999999999999999999 9988 53221000 000111122221 22
Q ss_pred eecCHHHHHHHhcccCCCCCCCccEEEEEe
Q psy14582 1077 VELGALDVLQMLGRAGRPQYDTKGEGVLIT 1106 (1689)
Q Consensus 1077 ~~~s~~d~lQm~GRAGR~g~d~~G~~iil~ 1106 (1689)
.+.+..+|+||+|||||.| ...|.|++++
T Consensus 268 ~p~~~~~~~Qr~GR~GR~g-~~~g~~~~l~ 296 (440)
T 1yks_A 268 LRISASSAAQRRGRIGRNP-NRDGDSYYYS 296 (440)
T ss_dssp EECCHHHHHHHHTTSSCCT-TCCCEEEEEC
T ss_pred cccCHHHHHHhccccCCCC-CCCceEEEEe
Confidence 2568999999999999973 2689999995
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.93 E-value=8.5e-27 Score=302.48 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=88.5
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.++++||||++++.++.++..|... ...++.+||. +|..
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~-------------------------------------g~~v~~lHg~----eR~~ 447 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA-------------------------------------GKRVIQLNRK----SYDT 447 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT-------------------------------------TCCEEEECSS----SHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC-------------------------------------CCeEEEeChH----HHHH
Confidence 4689999999999999999888642 1236677883 8999
Q ss_pred HHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCC--
Q psy14582 997 VEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG-- 1074 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~-- 1074 (1689)
+++.|++|.++|||||+++++|||+| +++| |-.. +.-..+|| ||+..+
T Consensus 448 v~~~F~~g~~~VLVaTdv~e~GIDip-v~~V-----------------I~~g-------~~~~p~vi-----~da~~r~~ 497 (673)
T 2wv9_A 448 EYPKCKNGDWDFVITTDISEMGANFG-ASRV-----------------IDCR-------KSVKPTIL-----DEGEGRVI 497 (673)
T ss_dssp HGGGGGTCCCSEEEECGGGGTTCCCC-CSEE-----------------EECC-------EECCEEEE-----CSTTCEEE
T ss_pred HHHHHHCCCceEEEECchhhcceeeC-CcEE-----------------EECC-------Ccccceee-----ecccccce
Confidence 99999999999999999999999999 8888 4221 11111222 332211
Q ss_pred --cceecCHHHHHHHhcccCCCCCCCccEEEEEe
Q psy14582 1075 --RWVELGALDVLQMLGRAGRPQYDTKGEGVLIT 1106 (1689)
Q Consensus 1075 --~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~ 1106 (1689)
.-.+.+..+|+||+|||||.+ ...|.|+++.
T Consensus 498 ll~d~P~s~~~y~Qr~GRaGR~~-g~~G~ai~l~ 530 (673)
T 2wv9_A 498 LSVPSAITSASAAQRRGRVGRNP-SQIGDEYHYG 530 (673)
T ss_dssp ECCSEECCHHHHHHHHTTSSCCS-SCCCEEEEEC
T ss_pred ecccCCCCHHHHHHHhhccCCCC-CCCCEEEEEE
Confidence 013578999999999999983 2789999995
No 46
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.93 E-value=3.8e-24 Score=275.05 Aligned_cols=167 Identities=15% Similarity=0.222 Sum_probs=116.7
Q ss_pred ceEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccceE-E-EEEeechhhHHHHHHHhhHHHHHHHHH-HhCCCeE
Q psy14582 846 VRLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVALE-Q-QYIGVTEKKALKRFQVMNDIVYEKVME-HAGRNQL 921 (1689)
Q Consensus 846 ~riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~RpvpL~-~-~~~~~~~~~~~~~~~~m~~~~~~~i~~-~~~~~~v 921 (1689)
.++.|+|+|... ..++.+..+.. ++.. +..+|+.-. + .++..+... ++..+.. .+.+ +..+.|+
T Consensus 368 ~kl~GmTGTa~te~~e~~~iY~l~----vv~I-Ptn~p~~r~d~~d~v~~~~~~---K~~al~~----~i~~~~~~~~pv 435 (844)
T 1tf5_A 368 EKLAGMTGTAKTEEEEFRNIYNMQ----VVTI-PTNRPVVRDDRPDLIYRTMEG---KFKAVAE----DVAQRYMTGQPV 435 (844)
T ss_dssp SEEEEEESCCGGGHHHHHHHHCCC----EEEC-CCSSCCCCEECCCEEESSHHH---HHHHHHH----HHHHHHHHTCCE
T ss_pred hhhccCCcccchhHHHHHHHhCCc----eEEe-cCCCCcccccCCcEEEeCHHH---HHHHHHH----HHHHHHhcCCcE
Confidence 368999999973 56666666543 3333 555664321 1 122233322 2222222 2222 2346789
Q ss_pred EEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHH
Q psy14582 922 LVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLF 1001 (1689)
Q Consensus 922 LVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F 1001 (1689)
||||+|+..++.++..|...+... ...||++.+.+|..+.+.|
T Consensus 436 LVft~s~~~se~Ls~~L~~~gi~~-------------------------------------~vLhg~~~~rEr~ii~~ag 478 (844)
T 1tf5_A 436 LVGTVAVETSELISKLLKNKGIPH-------------------------------------QVLNAKNHEREAQIIEEAG 478 (844)
T ss_dssp EEEESCHHHHHHHHHHHHTTTCCC-------------------------------------EEECSSCHHHHHHHHTTTT
T ss_pred EEEECCHHHHHHHHHHHHHCCCCE-------------------------------------EEeeCCccHHHHHHHHHcC
Confidence 999999999999999987644332 3449999999998887777
Q ss_pred hcCCeEEEEEcchhccCCCCC--------CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCC
Q psy14582 1002 ADRHIQVLVSTATLAWGVNLP--------AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEK 1073 (1689)
Q Consensus 1002 ~~g~i~VLVaT~vl~rGIDIp--------~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~ 1073 (1689)
+.| .|+||||+++||+||+ ++.+| .|.++|.
T Consensus 479 ~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~V------------------------In~d~p~--------------- 517 (844)
T 1tf5_A 479 QKG--AVTIATNMAGRGTDIKLGEGVKELGGLAV------------------------VGTERHE--------------- 517 (844)
T ss_dssp STT--CEEEEETTSSTTCCCCCCTTSGGGTSEEE------------------------EESSCCS---------------
T ss_pred CCC--eEEEeCCccccCcCccccchhhhcCCcEE------------------------EEecCCC---------------
Confidence 766 6999999999999999 77787 4555554
Q ss_pred CcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1074 GRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1074 ~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
+...|.||+|||||.| ..|.++.+++..+
T Consensus 518 ------s~r~y~hr~GRTGRqG--~~G~s~~~vs~eD 546 (844)
T 1tf5_A 518 ------SRRIDNQLRGRSGRQG--DPGITQFYLSMED 546 (844)
T ss_dssp ------SHHHHHHHHTTSSGGG--CCEEEEEEEETTS
T ss_pred ------CHHHHHhhcCccccCC--CCCeEEEEecHHH
Confidence 4889999999999999 8999999887644
No 47
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.92 E-value=4.2e-25 Score=281.11 Aligned_cols=69 Identities=22% Similarity=0.248 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 479 FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 479 ~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
..+|+|+|.++++.++ .++++|+|||||||||++|++|++..+... +.+++||+||++|+.|++..|.+
T Consensus 111 ~~~l~~~Q~~ai~~~~-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------~~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp EECCCHHHHHHHHHHH-HHSEEEEECCSTTTHHHHHHHHHHHHHHHC----------SSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHHhCC----------CCeEEEEECcHHHHHHHHHHHHH
Confidence 4589999999999988 578999999999999999999998877531 23899999999999999977743
No 48
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.92 E-value=2e-25 Score=279.80 Aligned_cols=120 Identities=16% Similarity=0.113 Sum_probs=84.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHH
Q psy14582 918 RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLV 997 (1689)
Q Consensus 918 ~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~v 997 (1689)
++++||||+|++.|+.++..|...+. .+...|+. +|..+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~-------------------------------------~v~~lh~~----~R~~~ 228 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGK-------------------------------------KVIQLNRK----SYDTE 228 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTC-------------------------------------CEEEESTT----CCCCC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCC-------------------------------------cEEecCHH----HHHHH
Confidence 57999999999999999999876321 23344763 78889
Q ss_pred HHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCc--
Q psy14582 998 EDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGR-- 1075 (1689)
Q Consensus 998 e~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~-- 1075 (1689)
++.|++|.++|||||+++++|+|+|+ ++| |.+.+. +..+..|++..+.
T Consensus 229 ~~~f~~g~~~iLVaT~v~~~GiDip~-~~V-----------------I~~G~~------------~~~~~~~~~~~~~~~ 278 (459)
T 2z83_A 229 YPKCKNGDWDFVITTDISEMGANFGA-SRV-----------------IDCRKS------------VKPTILEEGEGRVIL 278 (459)
T ss_dssp GGGSSSCCCSEEEESSCC---CCCSC-SEE-----------------EECCEE------------CCEEEECSSSCEEEE
T ss_pred HhhccCCCceEEEECChHHhCeecCC-CEE-----------------EECCcc------------ccccccccccccccc
Confidence 99999999999999999999999998 777 432210 0001112222211
Q ss_pred --ceecCHHHHHHHhcccCCCCCCCccEEEEEecCC
Q psy14582 1076 --WVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS 1109 (1689)
Q Consensus 1076 --~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~ 1109 (1689)
-.+.|..+|+||+|||||.| ...|.+++++...
T Consensus 279 ~~d~p~s~~~~~QR~GRaGR~g-~~~G~~~~~~~~~ 313 (459)
T 2z83_A 279 GNPSPITSASAAQRRGRVGRNP-NQVGDEYHYGGAT 313 (459)
T ss_dssp CSCEECCHHHHHHHHTTSSCCT-TCCCEEEEECSCC
T ss_pred ccCCCCCHHHHHHhccccCCCC-CCCCeEEEEEccc
Confidence 14678999999999999998 2389999998764
No 49
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.92 E-value=1e-23 Score=270.00 Aligned_cols=64 Identities=16% Similarity=-0.023 Sum_probs=54.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
|+ .|+|+|..++|.++ .|+ |++|+||+|||++|.+|++..... +..+++|+||++||.|+...+
T Consensus 109 G~-rP~~VQ~~~ip~Ll-~G~--Iaem~TGeGKTLa~~LP~~l~aL~-----------g~~v~VvTpTreLA~Qdae~m 172 (922)
T 1nkt_A 109 DQ-RPFDVQVMGAAALH-LGN--VAEMKTGEGKTLTCVLPAYLNALA-----------GNGVHIVTVNDYLAKRDSEWM 172 (922)
T ss_dssp SC-CCCHHHHHHHHHHH-TTE--EEECCTTSCHHHHTHHHHHHHHTT-----------TSCEEEEESSHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHhHh-cCC--EEEecCCCccHHHHHHHHHHHHHh-----------CCCeEEEeCCHHHHHHHHHHH
Confidence 88 99999999999887 666 999999999999999999644331 236999999999999988544
No 50
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.91 E-value=1.3e-24 Score=273.85 Aligned_cols=109 Identities=18% Similarity=0.278 Sum_probs=85.7
Q ss_pred HHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHH
Q psy14582 914 EHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVD 993 (1689)
Q Consensus 914 ~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~d 993 (1689)
....++++||||++++.+..++..|. +.++|++++..+
T Consensus 345 ~~~~~~k~lvF~~~~~~~~~l~~~l~------------------------------------------~~~~~g~~~~~~ 382 (472)
T 2fwr_A 345 ERHRKDKIIIFTRHNELVYRISKVFL------------------------------------------IPAITHRTSREE 382 (472)
T ss_dssp HHTSSSCBCCBCSCHHHHHHHHHHTT------------------------------------------CCBCCSSSCSHH
T ss_pred HhCCCCcEEEEECCHHHHHHHHHHhC------------------------------------------cceeeCCCCHHH
Confidence 33557899999999998887776541 334599999999
Q ss_pred HHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCC
Q psy14582 994 RTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEK 1073 (1689)
Q Consensus 994 R~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~ 1073 (1689)
|..+++.|++|.++|||||+++++|+|+|++++| | .||+.
T Consensus 383 R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~V-----------------i----------------------~~~~~- 422 (472)
T 2fwr_A 383 REEILEGFRTGRFRAIVSSQVLDEGIDVPDANVG-----------------V----------------------IMSGS- 422 (472)
T ss_dssp HHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEE-----------------E----------------------EECCS-
T ss_pred HHHHHHHHhCCCCCEEEEcCchhcCcccccCcEE-----------------E----------------------EECCC-
Confidence 9999999999999999999999999999999988 3 23332
Q ss_pred CcceecCHHHHHHHhcccCCCCCC-CccEEEEEecCC
Q psy14582 1074 GRWVELGALDVLQMLGRAGRPQYD-TKGEGVLITNHS 1109 (1689)
Q Consensus 1074 ~~~~~~s~~d~lQm~GRAGR~g~d-~~G~~iil~~~~ 1109 (1689)
.++..|.||+|||||.|.. ....++.++..+
T Consensus 423 -----~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 423 -----GSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp -----SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred -----CCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 3578999999999999843 334444455543
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.91 E-value=1.6e-24 Score=269.43 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=84.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHH
Q psy14582 918 RNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLV 997 (1689)
Q Consensus 918 ~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~v 997 (1689)
++++||||++++.++.++..|... ...++.+||+ +|..+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~v~~lhg~----~r~~~ 209 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-------------------------------------GKKVLYLNRK----TFESE 209 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEESTT----THHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-------------------------------------CCeEEEeCCc----cHHHH
Confidence 578999999999999999988752 1246778987 57889
Q ss_pred HHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEccc-ccccCCCCCceEEEeceeeecCCCCcc
Q psy14582 998 EDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTAT-LAWGVNLPAHTVIIKGTQIYNPEKGRW 1076 (1689)
Q Consensus 998 e~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~T-La~GvNLPa~~VII~gt~~yd~~~~~~ 1076 (1689)
++.|++|.++|||||+++++|+|+| +.+| |.+.+ ..--+| ..+.+|. |+
T Consensus 210 ~~~f~~g~~~vLVaT~v~e~GiDip-~~~V-----------------I~~g~~~~~v~d--~~~~vi~----~~------ 259 (431)
T 2v6i_A 210 YPKCKSEKWDFVITTDISEMGANFK-ADRV-----------------IDPRKTIKPILL--DGRVSMQ----GP------ 259 (431)
T ss_dssp TTHHHHSCCSEEEECGGGGTSCCCC-CSEE-----------------EECCEEEEEEEE--TTEEEEE----EE------
T ss_pred HHhhcCCCCeEEEECchHHcCcccC-CcEE-----------------EecCccccceec--ccceeec----cc------
Confidence 9999999999999999999999998 6666 32211 000011 1122222 11
Q ss_pred eecCHHHHHHHhcccCCCCCCCccEEEEEec
Q psy14582 1077 VELGALDVLQMLGRAGRPQYDTKGEGVLITN 1107 (1689)
Q Consensus 1077 ~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~ 1107 (1689)
.+.+..+|+||+|||||.|. ..|.++++..
T Consensus 260 ~p~~~~~~~Qr~GR~GR~g~-~~~~~~~~~~ 289 (431)
T 2v6i_A 260 IAITPASAAQRRGRIGRNPE-KLGDIYAYSG 289 (431)
T ss_dssp EECCHHHHHHHHTTSSCCTT-CCCCEEEECS
T ss_pred ccCCHHHHHHhhhccCCCCC-CCCeEEEEcC
Confidence 35689999999999999872 3566666653
No 52
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.91 E-value=2.7e-23 Score=266.28 Aligned_cols=167 Identities=16% Similarity=0.200 Sum_probs=118.6
Q ss_pred ceEEEEecCCC-CHHHHHHHhhcCCCccEEEecCCCcccceEEE--EEeechhhHHHHHHHhhHHHHHHHHH-HhCCCeE
Q psy14582 846 VRLVGLSATLP-NYKDVATLLRIKPETGLFYFDNSFRPVALEQQ--YIGVTEKKALKRFQVMNDIVYEKVME-HAGRNQL 921 (1689)
Q Consensus 846 ~riV~lSATl~-n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~--~~~~~~~~~~~~~~~m~~~~~~~i~~-~~~~~~v 921 (1689)
.++.|||+|.. ...++.+..+.. + ..-+..+|+.-..+ ++..+...+ +.++ ...+.+ +..+.|+
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~----v-v~IPtn~p~~R~d~~d~v~~~~~~K---~~al----~~~i~~~~~~gqpv 444 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLD----T-VVVPTNRPMIRKDLPDLVYMTEAEK---IQAI----IEDIKERTAKGQPV 444 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCE----E-EECCCSSCCCCEECCCEEESSHHHH---HHHH----HHHHHHHHTTTCCE
T ss_pred hhhhcCCCCchhHHHHHHHHhCCc----E-EEcCCCCCceeecCCcEEEeCHHHH---HHHH----HHHHHHHhcCCCCE
Confidence 37899999998 466677666542 3 33456777543221 233333222 2222 222323 2346799
Q ss_pred EEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHH
Q psy14582 922 LVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLF 1001 (1689)
Q Consensus 922 LVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F 1001 (1689)
||||+|+..++.++..|...+.... ..||++...+|..+.+.|
T Consensus 445 LVft~sie~se~Ls~~L~~~gi~~~-------------------------------------vLnak~~~rEa~iia~ag 487 (853)
T 2fsf_A 445 LVGTISIEKSELVSNELTKAGIKHN-------------------------------------VLNAKFHANEAAIVAQAG 487 (853)
T ss_dssp EEEESSHHHHHHHHHHHHHTTCCCE-------------------------------------ECCTTCHHHHHHHHHTTT
T ss_pred EEEECcHHHHHHHHHHHHHCCCCEE-------------------------------------EecCChhHHHHHHHHhcC
Confidence 9999999999999999987554333 349999999999999999
Q ss_pred hcCCeEEEEEcchhccCCCCCCc-------------------------------------ceeehhhHHHHhhcccceEE
Q psy14582 1002 ADRHIQVLVSTATLAWGVNLPAH-------------------------------------TVVDRTLVEDLFADRHIQVL 1044 (1689)
Q Consensus 1002 ~~g~i~VLVaT~vl~rGIDIp~V-------------------------------------~~V~R~~~~~~f~~g~i~vL 1044 (1689)
+.| .|+||||+++||+||+.. .+|
T Consensus 488 r~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~V----------------- 548 (853)
T 2fsf_A 488 YPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHI----------------- 548 (853)
T ss_dssp STT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEE-----------------
T ss_pred CCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEE-----------------
Confidence 998 699999999999999974 233
Q ss_pred EEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1045 VSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1045 VaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
.|.++| -|...|.|++|||||.| .+|.++.+++..+
T Consensus 549 -------I~te~p---------------------es~riy~qr~GRTGRqG--d~G~s~~fls~eD 584 (853)
T 2fsf_A 549 -------IGTERH---------------------ESRRIDNQLRGRSGRQG--DAGSSRFYLSMED 584 (853)
T ss_dssp -------EESSCC---------------------SSHHHHHHHHTTSSGGG--CCEEEEEEEETTS
T ss_pred -------EEccCC---------------------CCHHHHHhhccccccCC--CCeeEEEEecccH
Confidence 233333 35889999999999999 8999998887654
No 53
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.91 E-value=7.5e-25 Score=280.03 Aligned_cols=118 Identities=20% Similarity=0.177 Sum_probs=84.3
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.++++||||+|++.++.+++.|... ...+..+||+|++.+
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~-------------------------------------g~~v~~lHG~l~q~e--- 434 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL-------------------------------------GINAVAYYRGLDVSV--- 434 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT-------------------------------------TCCEEEECTTSCGGG---
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC-------------------------------------CCcEEEecCCCCHHH---
Confidence 4689999999999999999988752 124667899999875
Q ss_pred HHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCc-
Q psy14582 997 VEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGR- 1075 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~- 1075 (1689)
|+++..+|||||++++||||+| |++| |-... ....||- --|||..+-
T Consensus 435 ----r~~~~~~VLVATdVaerGIDId-V~~V-----------------I~~Gl-------~~~~ViN---yDydP~~gl~ 482 (666)
T 3o8b_A 435 ----IPTIGDVVVVATDALMTGYTGD-FDSV-----------------IDCNT-------CVTQTVD---FSLDPTFTIE 482 (666)
T ss_dssp ----SCSSSCEEEEECTTHHHHCCCC-BSEE-----------------EECCE-------EEEEEEE---CCCSSSCEEE
T ss_pred ----HHhCCCcEEEECChHHccCCCC-CcEE-----------------EecCc-------ccccccc---cccccccccc
Confidence 4566679999999999999987 8888 32110 0000000 003343221
Q ss_pred --ceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1076 --WVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1076 --~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
..+.+..+|+||+||||| | ..|. +.+++..+
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g--~~G~-i~lvt~~e 515 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-G--RRGI-YRFVTPGE 515 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-S--SCEE-EEESCCCC
T ss_pred cccCcCCHHHHHHHhccCCC-C--CCCE-EEEEecch
Confidence 246789999999999999 6 7899 88877654
No 54
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.91 E-value=5.2e-23 Score=266.56 Aligned_cols=118 Identities=18% Similarity=0.127 Sum_probs=86.2
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHH
Q psy14582 916 AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRT 995 (1689)
Q Consensus 916 ~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~ 995 (1689)
...+++||||++++.|..++..|........ ......+..+||.++ .+|.
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~-----------------------------~~~~~~~~~i~g~~~-~~r~ 486 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLS-----------------------------RKHPDYVARVTSEEG-KIGK 486 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHH-----------------------------TTCTTSEEECSSTTH-HHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhh-----------------------------ccCCCeEEEEeCCCh-HHHH
Confidence 3457999999999999999999987533210 001223566788875 4799
Q ss_pred HHHHHHhcCCeE---EEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCC
Q psy14582 996 LVEDLFADRHIQ---VLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 1072 (1689)
Q Consensus 996 ~ve~~F~~g~i~---VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~ 1072 (1689)
.+++.|++|..+ |||||+++++|+|+|++++| | .|++.
T Consensus 487 ~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~V-----------------i----------------------~~~~~ 527 (590)
T 3h1t_A 487 GHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNV-----------------V----------------------LARVV 527 (590)
T ss_dssp HHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEE-----------------E----------------------EESCC
T ss_pred HHHHHHhCCCCCCCEEEEECChhhcCccchheeEE-----------------E----------------------EEecC
Confidence 999999998866 88889999999999998888 3 23432
Q ss_pred CCcceecCHHHHHHHhcccCCCCCC-CccEEEEEecC
Q psy14582 1073 KGRWVELGALDVLQMLGRAGRPQYD-TKGEGVLITNH 1108 (1689)
Q Consensus 1073 ~~~~~~~s~~d~lQm~GRAGR~g~d-~~G~~iil~~~ 1108 (1689)
.|+..|+||+|||||.+.+ ....++|+-.-
T Consensus 528 ------~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 528 ------NSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp ------CCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred ------CChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 4689999999999998743 23444454433
No 55
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.84 E-value=8e-19 Score=220.36 Aligned_cols=189 Identities=16% Similarity=0.243 Sum_probs=126.8
Q ss_pred ceEEEEecCCCC-HHHHHHHhhcCCCccEEEecCCCcccc-eEEE-EEeechhhHHHHHHHhhHHHHHHHHH-HhCCCeE
Q psy14582 846 VRLVGLSATLPN-YKDVATLLRIKPETGLFYFDNSFRPVA-LEQQ-YIGVTEKKALKRFQVMNDIVYEKVME-HAGRNQL 921 (1689)
Q Consensus 846 ~riV~lSATl~n-~~dva~~L~~~~~~~~~~f~~~~Rpvp-L~~~-~~~~~~~~~~~~~~~m~~~~~~~i~~-~~~~~~v 921 (1689)
.++.|||+|+.. .+++.+..+.. ++. -+..+|.. ..+. .+..+... ++..+. ..+.+ +..+.|+
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY~l~----vv~-IPtnkp~~R~d~~d~vy~t~~e---K~~al~----~~I~~~~~~gqpV 477 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVYGME----VVV-IPTHKPMIRKDHDDLVFRTQKE---KYEKIV----EEIEKRYKKGQPV 477 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHSCCC----EEE-CCCSSCCCCEECCCEEESSHHH---HHHHHH----HHHHHHHHHTCCE
T ss_pred hHHeEECCCCchHHHHHHHHhCCe----EEE-ECCCCCcceeecCcEEEecHHH---HHHHHH----HHHHHHhhCCCCE
Confidence 469999999984 55566655532 333 35556643 3221 22223222 222222 22322 2346899
Q ss_pred EEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHH
Q psy14582 922 LVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLF 1001 (1689)
Q Consensus 922 LVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F 1001 (1689)
||||+|+..++.++..|...+.. ...+||+....+|..+...|
T Consensus 478 LVFt~S~e~sE~Ls~~L~~~Gi~-------------------------------------~~vLhgkq~~rE~~ii~~ag 520 (822)
T 3jux_A 478 LVGTTSIEKSELLSSMLKKKGIP-------------------------------------HQVLNAKYHEKEAEIVAKAG 520 (822)
T ss_dssp EEEESSHHHHHHHHHHHHTTTCC-------------------------------------CEEECSCHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHCCCC-------------------------------------EEEeeCCchHHHHHHHHhCC
Confidence 99999999999999998764332 23459998888888888888
Q ss_pred hcCCeEEEEEcchhccCCCCC--------CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCC
Q psy14582 1002 ADRHIQVLVSTATLAWGVNLP--------AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEK 1073 (1689)
Q Consensus 1002 ~~g~i~VLVaT~vl~rGIDIp--------~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~ 1073 (1689)
+.| .|+|||++++||+||+ ++.+| .|.++|.
T Consensus 521 ~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhV------------------------Inte~Pe--------------- 559 (822)
T 3jux_A 521 QKG--MVTIATNMAGRGTDIKLGPGVAELGGLCI------------------------IGTERHE--------------- 559 (822)
T ss_dssp STT--CEEEEETTTTTTCCCCCCTTTTTTTSCEE------------------------EESSCCS---------------
T ss_pred CCC--eEEEEcchhhCCcCccCCcchhhcCCCEE------------------------EecCCCC---------------
Confidence 777 5999999999999997 55577 3444453
Q ss_pred CcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcH-------HHHHHHhh-----CcCCccccccccc
Q psy14582 1074 GRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL-------QYYLSLLN-----HQLPVESQMISKL 1132 (1689)
Q Consensus 1074 ~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~-------~~y~~ll~-----~~~pieS~l~~~l 1132 (1689)
+...|.||+|||||.| .+|.++.+++..+. +...+++. +..||++.+.+..
T Consensus 560 ------s~r~y~qriGRTGRqG--~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~~~~i~~~~v~~~ 622 (822)
T 3jux_A 560 ------SRRIDNQLRGRAGRQG--DPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEEGQPIQHPMLSKL 622 (822)
T ss_dssp ------SHHHHHHHHTTSSCSS--CCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCSSSCBCCHHHHHH
T ss_pred ------CHHHHHHhhCccccCC--CCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCCCceeccHHHHHH
Confidence 4889999999999999 89999999887652 22223332 3467877766554
No 56
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.82 E-value=3e-19 Score=241.97 Aligned_cols=109 Identities=18% Similarity=0.233 Sum_probs=88.6
Q ss_pred HHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHH
Q psy14582 914 EHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVD 993 (1689)
Q Consensus 914 ~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~d 993 (1689)
....++++||||+++..+..++..|... ....++.+||+|++.+
T Consensus 499 ~~~~~~k~iVF~~~~~~~~~l~~~L~~~------------------------------------~g~~~~~lhG~~~~~~ 542 (968)
T 3dmq_A 499 TSHRSQKVLVICAKAATALQLEQVLRER------------------------------------EGIRAAVFHEGMSIIE 542 (968)
T ss_dssp HHTSSSCCCEECSSTHHHHHHHHHHHTT------------------------------------TCCCEEEECTTSCTTH
T ss_pred HhCCCCCEEEEeCcHHHHHHHHHHHHHH------------------------------------cCCcEEEEeCCCCHHH
Confidence 3356789999999999999988887631 1235678899999999
Q ss_pred HHHHHHHHhcCC--eEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecC
Q psy14582 994 RTLVEDLFADRH--IQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 1071 (1689)
Q Consensus 994 R~~ve~~F~~g~--i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~ 1071 (1689)
|..+++.|++|. ++|||||+++++|+|+|++++| | .||+
T Consensus 543 R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~V-----------------I----------------------~~d~ 583 (968)
T 3dmq_A 543 RDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHM-----------------V----------------------MFDL 583 (968)
T ss_dssp HHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEE-----------------E----------------------CSSC
T ss_pred HHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEE-----------------E----------------------EecC
Confidence 999999999998 9999999999999999999888 2 2443
Q ss_pred CCCcceecCHHHHHHHhcccCCCCCCCccEEEEE
Q psy14582 1072 EKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLI 1105 (1689)
Q Consensus 1072 ~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil 1105 (1689)
. .++..|.||+||+||.| ..|.++++
T Consensus 584 p------~~~~~~~Q~~GR~~R~G--q~~~v~v~ 609 (968)
T 3dmq_A 584 P------FNPDLLEQRIGRLDRIG--QAHDIQIH 609 (968)
T ss_dssp C------SSHHHHHHHHHTTSCSS--SCSCCEEE
T ss_pred C------CCHHHHHHHhhccccCC--CCceEEEE
Confidence 2 45899999999999999 44544443
No 57
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.81 E-value=7.9e-20 Score=209.57 Aligned_cols=97 Identities=27% Similarity=0.251 Sum_probs=78.8
Q ss_pred CCCCCCCCCCccCCCCccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCC
Q psy14582 452 KPKPMGPDETLVPIDKLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINAD 529 (1689)
Q Consensus 452 ~~~p~~~~~~l~~~~~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~ 529 (1689)
.|.|..++..+ .|++.+.+.+. ||.+|+|+|.+++|.++ +|+|++++||||||||++|++|++..+......
T Consensus 24 ~p~~~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~- 97 (242)
T 3fe2_A 24 CPKPVLNFYEA----NFPANVMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL- 97 (242)
T ss_dssp CCCCCSSTTTT----TCCHHHHHHHHTTTCCSCCHHHHHHHHHHH-HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC-
T ss_pred CCCccCCHhhc----CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc-
Confidence 34455555544 68888888886 99999999999999988 799999999999999999999999998754211
Q ss_pred CCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 530 GTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 530 g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
....+.++||++|||+|+.|+.+.+
T Consensus 98 --~~~~~~~~lil~Pt~~L~~Q~~~~~ 122 (242)
T 3fe2_A 98 --ERGDGPICLVLAPTRELAQQVQQVA 122 (242)
T ss_dssp --CTTCCCSEEEECSSHHHHHHHHHHH
T ss_pred --ccCCCCEEEEEeCcHHHHHHHHHHH
Confidence 1224678999999999999998554
No 58
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=206.30 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=70.1
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.+++.+.+++. ||.+|+|+|.++++.++ +|+|++++||||||||++|++|++..+...... .....+.++||++|
T Consensus 26 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~--~~~~~~~~~lil~P 102 (228)
T 3iuy_A 26 QQYPDLLKSIIRVGILKPTPIQSQAWPIIL-QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS--REQRNGPGMLVLTP 102 (228)
T ss_dssp TTCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHC-----------CCCSEEEECS
T ss_pred ccCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhccch--hhccCCCcEEEEeC
Confidence 56777777775 99999999999999988 799999999999999999999999988643211 11225678999999
Q ss_pred chhhhHhhhhcc
Q psy14582 545 MRSLVQEMVGNF 556 (1689)
Q Consensus 545 treLa~Qi~~~f 556 (1689)
||+||.|+.+.+
T Consensus 103 t~~L~~q~~~~~ 114 (228)
T 3iuy_A 103 TRELALHVEAEC 114 (228)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999998655
No 59
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.6e-20 Score=213.55 Aligned_cols=86 Identities=23% Similarity=0.323 Sum_probs=73.3
Q ss_pred ccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccc
Q psy14582 468 LPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545 (1689)
Q Consensus 468 Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPt 545 (1689)
|++.+.+++. ||++|+|+|.++++.++ .|+|+|++||||||||++|++|+++.+...... ...+.++||++||
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~----~~~~~~~lil~Pt 135 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLL-EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM----PRNGTGVLILSPT 135 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHH-HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC----GGGCCCEEEECSS
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCCchHHHHHHHHHHHHhcccc----ccCCceEEEEeCC
Confidence 6788887776 99999999999999988 689999999999999999999999998764211 1245689999999
Q ss_pred hhhhHhhhhcccc
Q psy14582 546 RSLVQEMVGNFGK 558 (1689)
Q Consensus 546 reLa~Qi~~~f~k 558 (1689)
|+||.|++..+.+
T Consensus 136 ~~La~q~~~~~~~ 148 (262)
T 3ly5_A 136 RELAMQTFGVLKE 148 (262)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999866643
No 60
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.79 E-value=2.8e-18 Score=230.79 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHhc-------------CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccch
Q psy14582 480 KTLNRIQSRLCKSALES-------------DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR 546 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~-------------g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtr 546 (1689)
..|+|+|..|++.++.. +++.+++++||||||+++ +++++.+... ....++|||+|++
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~--------~~~~rvLvlvpr~ 340 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL--------DFIDKVFFVVDRK 340 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--------TTCCEEEEEECGG
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--------CCCceEEEEeCcH
Confidence 46999999999988741 478999999999999998 6666655421 1235899999999
Q ss_pred hhhHhhhhcccc
Q psy14582 547 SLVQEMVGNFGK 558 (1689)
Q Consensus 547 eLa~Qi~~~f~k 558 (1689)
+|+.|+...|.+
T Consensus 341 eL~~Q~~~~f~~ 352 (1038)
T 2w00_A 341 DLDYQTMKEYQR 352 (1038)
T ss_dssp GCCHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999866643
No 61
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.79 E-value=3.7e-19 Score=205.23 Aligned_cols=90 Identities=20% Similarity=0.295 Sum_probs=71.8
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCC-CCCCCCeEEEEEc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADG-TINADEFKIIYVA 543 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g-~~~~~~~kvl~la 543 (1689)
.|++.+.+++. ||.+|+|+|.++++.++ .|+|++++||||||||++|++|++..+.......+ .....+.++||++
T Consensus 29 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~ 107 (253)
T 1wrb_A 29 KLDPTIRNNILLASYQRPTPIQKNAIPAIL-EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILA 107 (253)
T ss_dssp SCCCSTTTTTTTTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEEC
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEE
Confidence 46777777775 99999999999999988 78999999999999999999999998875321100 0112346899999
Q ss_pred cchhhhHhhhhccc
Q psy14582 544 PMRSLVQEMVGNFG 557 (1689)
Q Consensus 544 PtreLa~Qi~~~f~ 557 (1689)
|||+|+.|++..+.
T Consensus 108 Pt~~L~~q~~~~~~ 121 (253)
T 1wrb_A 108 PTRELAIQILSESQ 121 (253)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999986553
No 62
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.79 E-value=4.4e-19 Score=210.00 Aligned_cols=82 Identities=20% Similarity=0.264 Sum_probs=70.7
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhc-CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALES-DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVA 543 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~-g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~la 543 (1689)
.|++.+..++. ||.+|||+|.+++|.++.. ++|+|++||||||||++|++|+++.+... ..++++||++
T Consensus 98 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~--------~~~~~~lil~ 169 (300)
T 3fmo_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--------NKYPQCLCLS 169 (300)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT--------SCSCCEEEEC
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc--------CCCceEEEEc
Confidence 57888888886 9999999999999999832 39999999999999999999999987542 2456899999
Q ss_pred cchhhhHhhhhcc
Q psy14582 544 PMRSLVQEMVGNF 556 (1689)
Q Consensus 544 PtreLa~Qi~~~f 556 (1689)
|||+||.|++..+
T Consensus 170 PtreLa~Q~~~~~ 182 (300)
T 3fmo_B 170 PTYELALQTGKVI 182 (300)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 9999999998555
No 63
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.78 E-value=7.7e-18 Score=219.46 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=95.3
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.+.++||||+|++.++.++..|.+.+ ..+.++||+|++.+|..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~g-------------------------------------i~~~~lh~~~~~~~R~~ 480 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHG-------------------------------------IRARYLHHELDAFKRQA 480 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-------------------------------------CCEEEECTTCCHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcC-------------------------------------CCceeecCCCCHHHHHH
Confidence 46799999999999999999887632 23566799999999999
Q ss_pred HHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcc
Q psy14582 997 VEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRW 1076 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~ 1076 (1689)
+++.|+.|.++|||||+++++|+|+|+|++| |-+. .....
T Consensus 481 ~~~~f~~g~~~VLvaT~~l~~GlDip~v~lV-----------------I~~d----------------------~d~~G- 520 (664)
T 1c4o_A 481 LIRDLRLGHYDCLVGINLLREGLDIPEVSLV-----------------AILD----------------------ADKEG- 520 (664)
T ss_dssp HHHHHHTTSCSEEEESCCCCTTCCCTTEEEE-----------------EETT----------------------TTSCS-
T ss_pred HHHHhhcCCceEEEccChhhcCccCCCCCEE-----------------EEeC----------------------CcccC-
Confidence 9999999999999999999999999999988 4332 21111
Q ss_pred eecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHH
Q psy14582 1077 VELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQ 1112 (1689)
Q Consensus 1077 ~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~ 1112 (1689)
.+.+..+|+||+|||||.+ .|.++++++..+..
T Consensus 521 ~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~~ 553 (664)
T 1c4o_A 521 FLRSERSLIQTIGRAARNA---RGEVWLYADRVSEA 553 (664)
T ss_dssp GGGSHHHHHHHHGGGTTST---TCEEEEECSSCCHH
T ss_pred CCCCHHHHHHHHCccCcCC---CCEEEEEEcCCCHH
Confidence 1346889999999999985 79999999876543
No 64
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.77 E-value=2.1e-17 Score=209.59 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=82.8
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.+.++||||+++..+..++..|... ...++.++||+++..+|..
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~------------------------------------~~~~~~~~~g~~~~~~R~~ 383 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKE------------------------------------LNTEVPFLYGELSKKERDD 383 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHH------------------------------------HTCCCCEEETTSCHHHHHH
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHh------------------------------------hCCCeEEEECCCCHHHHHH
Confidence 4679999999999888887777542 1234667799999999999
Q ss_pred HHHHHhcC-CeE-EEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCC
Q psy14582 997 VEDLFADR-HIQ-VLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 1074 (1689)
Q Consensus 997 ve~~F~~g-~i~-VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~ 1074 (1689)
+++.|++| ..+ +||||+++++|+|++++++| | .||+.
T Consensus 384 ~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v-----------------i----------------------~~d~~-- 422 (500)
T 1z63_A 384 IISKFQNNPSVKFIVLSVKAGGFGINLTSANRV-----------------I----------------------HFDRW-- 422 (500)
T ss_dssp HHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE-----------------E----------------------ESSCC--
T ss_pred HHHHhcCCCCCCEEEEecccccCCCchhhCCEE-----------------E----------------------EeCCC--
Confidence 99999998 565 78788888888888877777 2 24432
Q ss_pred cceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1075 RWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1075 ~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
.++..+.|++||++|.|-.....++.++....
T Consensus 423 ----~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 423 ----WNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp ----SCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred ----CCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 35778999999999999655555565665544
No 65
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.77 E-value=1.7e-19 Score=206.94 Aligned_cols=98 Identities=23% Similarity=0.345 Sum_probs=78.3
Q ss_pred CCCCCCCCCccCCCCccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCC
Q psy14582 453 PKPMGPDETLVPIDKLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADG 530 (1689)
Q Consensus 453 ~~p~~~~~~l~~~~~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g 530 (1689)
|.|..++..+.....|++.+.+++. ||..|+|+|.++++.++ +|+|++++||||||||++|++|++..+...
T Consensus 21 p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----- 94 (245)
T 3dkp_A 21 PDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVML-HGRELLASAPTGSGKTLAFSIPILMQLKQP----- 94 (245)
T ss_dssp CCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHCSC-----
T ss_pred CCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHhhc-----
Confidence 3344444443222367888888886 99999999999999888 799999999999999999999999988642
Q ss_pred CCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 531 TINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 531 ~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
...+.++||++|||+|+.|++..+.+
T Consensus 95 --~~~~~~~lil~Pt~~L~~q~~~~~~~ 120 (245)
T 3dkp_A 95 --ANKGFRALIISPTRELASQIHRELIK 120 (245)
T ss_dssp --CSSSCCEEEECSSHHHHHHHHHHHHH
T ss_pred --ccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 12456899999999999999866543
No 66
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.77 E-value=3.3e-19 Score=205.48 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=71.8
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+|++.+.+++. ||..|+|+|.++++.++ .|+|++++||||||||++|++|++..+.... .+.++||++|
T Consensus 49 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~--------~~~~~lil~P 119 (249)
T 3ber_A 49 GVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGRDIIGLAETGSGKTGAFALPILNALLETP--------QRLFALVLTP 119 (249)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHSC--------CSSCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCCchhHhHHHHHHHHhcCC--------CCceEEEEeC
Confidence 57888888886 99999999999999888 7899999999999999999999999887531 3468999999
Q ss_pred chhhhHhhhhcc
Q psy14582 545 MRSLVQEMVGNF 556 (1689)
Q Consensus 545 treLa~Qi~~~f 556 (1689)
||+|+.|+...+
T Consensus 120 tr~L~~q~~~~~ 131 (249)
T 3ber_A 120 TRELAFQISEQF 131 (249)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999998655
No 67
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.76 E-value=1.1e-18 Score=194.41 Aligned_cols=81 Identities=22% Similarity=0.310 Sum_probs=70.9
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|++.+.+.+. ||.+|+|+|.++++.++ +|+|++++||||||||++|++|++..+... ..+.++||++|
T Consensus 9 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--------~~~~~~lil~P 79 (206)
T 1vec_A 9 CLKRELLMGIFEMGWEKPSPIQEESIPIAL-SGRDILARAKNGTGKSGAYLIPLLERLDLK--------KDNIQAMVIVP 79 (206)
T ss_dssp CCCHHHHHHHHTTTCCSCCHHHHHHHHHHH-TTCCEEEECCSSSTTHHHHHHHHHHHCCTT--------SCSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHc-cCCCEEEECCCCCchHHHHHHHHHHHhccc--------CCCeeEEEEeC
Confidence 57888888886 99999999999999888 789999999999999999999999877532 24568999999
Q ss_pred chhhhHhhhhcc
Q psy14582 545 MRSLVQEMVGNF 556 (1689)
Q Consensus 545 treLa~Qi~~~f 556 (1689)
|++|+.|+...+
T Consensus 80 t~~L~~q~~~~~ 91 (206)
T 1vec_A 80 TRELALQVSQIC 91 (206)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 999999998655
No 68
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.76 E-value=2.5e-18 Score=195.46 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=71.5
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|++.+.+++. ||.+|+|+|.++++.++ +|+|++++||||||||++|++|++..+... ..+.++||++|
T Consensus 30 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--------~~~~~~lil~P 100 (230)
T 2oxc_A 30 LLSRPVLEGLRAAGFERPSPVQLKAIPLGR-CGLDLIVQAKSGTGKTCVFSTIALDSLVLE--------NLSTQILILAP 100 (230)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCTT--------SCSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHhc--------CCCceEEEEeC
Confidence 57888888886 99999999999999888 799999999999999999999999887532 13468999999
Q ss_pred chhhhHhhhhccc
Q psy14582 545 MRSLVQEMVGNFG 557 (1689)
Q Consensus 545 treLa~Qi~~~f~ 557 (1689)
||+|+.|++..+.
T Consensus 101 t~~L~~q~~~~~~ 113 (230)
T 2oxc_A 101 TREIAVQIHSVIT 113 (230)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999986553
No 69
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.76 E-value=8.7e-19 Score=200.32 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=71.5
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|++.+.+++. ||..|+|+|.++++.++ .|+|++++||||||||++|++|+++.+... ..+.++||++|
T Consensus 36 ~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~~~li~apTGsGKT~~~~l~~l~~l~~~--------~~~~~~lil~P 106 (237)
T 3bor_A 36 NLKESLLRGIYAYGFEKPSAIQQRAIIPCI-KGYDVIAQAQSGTGKTATFAISILQQLEIE--------FKETQALVLAP 106 (237)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEECCCSSHHHHHHHHHHHHHHCCTT--------SCSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHhc--------CCCceEEEEEC
Confidence 57888888876 99999999999999988 789999999999999999999999887532 13468999999
Q ss_pred chhhhHhhhhccc
Q psy14582 545 MRSLVQEMVGNFG 557 (1689)
Q Consensus 545 treLa~Qi~~~f~ 557 (1689)
||+|+.|+++.+.
T Consensus 107 t~~L~~q~~~~~~ 119 (237)
T 3bor_A 107 TRELAQQIQKVIL 119 (237)
T ss_dssp SHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999999986553
No 70
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.75 E-value=2.9e-18 Score=193.71 Aligned_cols=91 Identities=21% Similarity=0.257 Sum_probs=75.4
Q ss_pred CCCCCCCCccCCCCccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCC
Q psy14582 454 KPMGPDETLVPIDKLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGT 531 (1689)
Q Consensus 454 ~p~~~~~~l~~~~~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~ 531 (1689)
.+...+..+ .|++.+.+.+. ||.+|+|+|.++++.++ +|+|++++||||||||++|++|+++.+...
T Consensus 11 ~~~~~f~~l----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~------ 79 (224)
T 1qde_A 11 KVVYKFDDM----ELDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDTS------ 79 (224)
T ss_dssp CCCCCGGGG----TCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCTT------
T ss_pred cccCChhhc----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHHhcc------
Confidence 334444444 57888888886 99999999999999888 789999999999999999999999887532
Q ss_pred CCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 532 INADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 532 ~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
..+.++||++||++|+.|++..+.
T Consensus 80 --~~~~~~lil~Pt~~L~~q~~~~~~ 103 (224)
T 1qde_A 80 --VKAPQALMLAPTRELALQIQKVVM 103 (224)
T ss_dssp --CCSCCEEEECSSHHHHHHHHHHHH
T ss_pred --CCCceEEEEECCHHHHHHHHHHHH
Confidence 134689999999999999986553
No 71
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.75 E-value=5.7e-19 Score=199.13 Aligned_cols=82 Identities=26% Similarity=0.386 Sum_probs=71.8
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+|++.+.+++. ||.+|+|+|.++++.++ +|+|++++||||||||++|++|++..+... ..+.+++|++|
T Consensus 10 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~--------~~~~~~lil~P 80 (219)
T 1q0u_A 10 PFQPFIIEAIKTLRFYKPTEIQERIIPGAL-RGESMVGQSQTGTGKTHAYLLPIMEKIKPE--------RAEVQAVITAP 80 (219)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCSSHHHHHHHHHHHHHHCCTT--------SCSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhC--------cCCceEEEEcC
Confidence 57888888886 99999999999999888 789999999999999999999999887532 13568999999
Q ss_pred chhhhHhhhhccc
Q psy14582 545 MRSLVQEMVGNFG 557 (1689)
Q Consensus 545 treLa~Qi~~~f~ 557 (1689)
||+|+.|++..+.
T Consensus 81 t~~L~~q~~~~~~ 93 (219)
T 1q0u_A 81 TRELATQIYHETL 93 (219)
T ss_dssp SHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999999986553
No 72
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.75 E-value=3.8e-18 Score=190.17 Aligned_cols=85 Identities=21% Similarity=0.263 Sum_probs=72.5
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+|++.+.+.+. ||..|+|+|.++++.++ +|+|++++||||||||++|++|++..+..... ...+.+++|++|
T Consensus 7 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-----~~~~~~~lil~P 80 (207)
T 2gxq_A 7 PLKPEILEALHGRGLTTPTPIQAAALPLAL-EGKDLIGQARTGTGKTLAFALPIAERLAPSQE-----RGRKPRALVLTP 80 (207)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-----TTCCCSEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHc-CCCCEEEECCCCChHHHHHHHHHHHHHhhccc-----cCCCCcEEEEEC
Confidence 57888888886 99999999999999888 78999999999999999999999998764211 124568999999
Q ss_pred chhhhHhhhhccc
Q psy14582 545 MRSLVQEMVGNFG 557 (1689)
Q Consensus 545 treLa~Qi~~~f~ 557 (1689)
|++|+.|+.+.+.
T Consensus 81 ~~~L~~q~~~~~~ 93 (207)
T 2gxq_A 81 TRELALQVASELT 93 (207)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999986553
No 73
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=99.75 E-value=3.2e-18 Score=204.73 Aligned_cols=124 Identities=19% Similarity=0.418 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhcCC-CchhhccCChhhhhhhhcCCh-hhHHHHHHHHhCCcce
Q psy14582 1343 ADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNF-PWERLYDLGPNEIGELIRVPK-LGKTIHKYVHQFPKLE 1420 (1689)
Q Consensus 1343 a~~~l~L~k~i~~~~W~~~~pLrQ~~~i~~~~i~~~~~~~~-~~~~l~dl~~~el~~ll~~~~-~g~~i~~~~~~~P~l~ 1420 (1689)
+..+|+|||||+||+|++++||+|||||+++++++|+++|+ +++++.+++++++++++++++ .|+.+++++++||+++
T Consensus 138 ~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~ 217 (328)
T 3im1_A 138 ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVE 217 (328)
T ss_dssp HHHHHHHHHHHHHTSCTTSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHHHhhcCCCCCceeCCCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEE
Confidence 35789999999999999999999999999999999999998 899999999999999998764 7999999999999999
Q ss_pred EEEEeec---c-ccceEEEEEeecCCCccCc-------ccccccceEEEEEeccchh
Q psy14582 1421 LATHIQP---I-TRSTLRVELTISPDFQWDE-------KLHGGSEGFWILVEDVDSE 1466 (1689)
Q Consensus 1421 l~~~~~p---i-~~~~~~~~~~i~~~~~~~~-------~~~~~~e~~wi~v~d~~~~ 1466 (1689)
++++++| | +++.++|.|+++|+|.|+. ..|++.|+|||||||++++
T Consensus 218 v~~~v~~~~~i~~~~~~~l~v~l~~~~~~~~~~~~ap~fp~~k~e~ww~~v~d~~~~ 274 (328)
T 3im1_A 218 LTYSLNNSDSLISGVKQKITIQLTRDVEPENLQVTSEKYPFDKLESWWLVLGEVSKK 274 (328)
T ss_dssp EEEEETTGGGCCTTSEEEEEEEEEESSCCSCCBCCCSSCCBCCBCCEEEEEEEGGGT
T ss_pred EEEEecCCCcccCCCeEEEEEEEEECCCCCCCcEECCCCCCCccCCEEEEEEECCCC
Confidence 9999986 7 4789999999999999975 3588999999999998765
No 74
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=196.80 Aligned_cols=86 Identities=21% Similarity=0.332 Sum_probs=73.1
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|++.+.+.+. ||..|+|+|.++++.++ +|+|++++||||||||++|++|++..+...... ...+.+++|++|
T Consensus 31 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~----~~~~~~~lil~P 105 (236)
T 2pl3_A 31 PLSKKTLKGLQEAQYRLVTEIQKQTIGLAL-QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT----STDGLGVLIISP 105 (236)
T ss_dssp CCCHHHHHHHHHTTCCBCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC----GGGCCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc----ccCCceEEEEeC
Confidence 57888888886 99999999999999888 799999999999999999999999988753211 124568999999
Q ss_pred chhhhHhhhhccc
Q psy14582 545 MRSLVQEMVGNFG 557 (1689)
Q Consensus 545 treLa~Qi~~~f~ 557 (1689)
||+|+.|++..+.
T Consensus 106 t~~L~~q~~~~~~ 118 (236)
T 2pl3_A 106 TRELAYQTFEVLR 118 (236)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999986553
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.74 E-value=9.2e-17 Score=209.26 Aligned_cols=116 Identities=16% Similarity=0.245 Sum_probs=94.9
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.+.++||||+|++.++.++..|.+.+. .+.++||+|++.+|..
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~lh~~~~~~~R~~ 486 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGI-------------------------------------KVNYLHSEIKTLERIE 486 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTTCCHHHHHH
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCC-------------------------------------CeEEEeCCCCHHHHHH
Confidence 467999999999999999999876321 3456799999999999
Q ss_pred HHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcc
Q psy14582 997 VEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRW 1076 (1689)
Q Consensus 997 ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~ 1076 (1689)
+++.|+.|.++|||||+++++|+|+|+|++| |-+.. ..|.
T Consensus 487 ~l~~f~~g~~~VLVaT~~l~~GlDip~v~lV-----------------i~~d~-----------------d~~G------ 526 (661)
T 2d7d_A 487 IIRDLRLGKYDVLVGINLLREGLDIPEVSLV-----------------AILDA-----------------DKEG------ 526 (661)
T ss_dssp HHHHHHHTSCSEEEESCCCSTTCCCTTEEEE-----------------EETTT-----------------TCCT------
T ss_pred HHHHHhcCCeEEEEecchhhCCcccCCCCEE-----------------EEeCc-----------------cccc------
Confidence 9999999999999999999999999999998 43322 1111
Q ss_pred eecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHH
Q psy14582 1077 VELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQ 1112 (1689)
Q Consensus 1077 ~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~ 1112 (1689)
.+.+..+|+||+|||||. ..|.++++++..+..
T Consensus 527 ~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~~ 559 (661)
T 2d7d_A 527 FLRSERSLIQTIGRAARN---AEGRVIMYADKITKS 559 (661)
T ss_dssp TTTSHHHHHHHHHTTTTS---TTCEEEEECSSCCHH
T ss_pred CCCCHHHHHHHhCcccCC---CCCEEEEEEeCCCHH
Confidence 023688999999999997 489999999876543
No 76
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.72 E-value=2.2e-17 Score=186.05 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=70.4
Q ss_pred CccHHHHHhcc--CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 467 KLPRYVQHAFE--DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 467 ~Lp~~~~~~f~--g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|++.+.+++. ||+.|+|+|.++++.++ +|+|++++||||||||++|++|++..+... ..+.+++|++|
T Consensus 20 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--------~~~~~~lil~P 90 (220)
T 1t6n_A 20 LLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEPV--------TGQVSVLVMCH 90 (220)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCCC--------TTCCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCchhhhhhHHHHHhhhcc--------CCCEEEEEEeC
Confidence 57888888886 99999999999999888 789999999999999999999999876532 13458999999
Q ss_pred chhhhHhhhhcc
Q psy14582 545 MRSLVQEMVGNF 556 (1689)
Q Consensus 545 treLa~Qi~~~f 556 (1689)
|++|+.|+.+.+
T Consensus 91 t~~L~~q~~~~~ 102 (220)
T 1t6n_A 91 TRELAFQISKEY 102 (220)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999998655
No 77
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=99.72 E-value=1.6e-17 Score=199.55 Aligned_cols=123 Identities=20% Similarity=0.413 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhcCC-CchhhccCChhhhhhhhcCCh-hhHHHHHHHHhCCcceEE
Q psy14582 1345 KALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNF-PWERLYDLGPNEIGELIRVPK-LGKTIHKYVHQFPKLELA 1422 (1689)
Q Consensus 1345 ~~l~L~k~i~~~~W~~~~pLrQ~~~i~~~~i~~~~~~~~-~~~~l~dl~~~el~~ll~~~~-~g~~i~~~~~~~P~l~l~ 1422 (1689)
.+|+|||||+||+|++++||+|||||+++++++|+++++ +++++.++++++++.++++++ .++.+++++++||+++|+
T Consensus 144 ~~l~L~q~i~q~~w~~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~ 223 (339)
T 2q0z_X 144 AAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELS 223 (339)
T ss_dssp HHHHHHHHHHHTCCTTSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEE
T ss_pred HHHHHHHHHHHhcCCCCCceecCCCCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEEE
Confidence 578999999999999999999999999999999999998 999999999999999999775 579999999999999999
Q ss_pred EEeec---cc-cceEEEEEeecCCCccCcccc------cccceEEEEEeccchhh
Q psy14582 1423 THIQP---IT-RSTLRVELTISPDFQWDEKLH------GGSEGFWILVEDVDSEA 1467 (1689)
Q Consensus 1423 ~~~~p---i~-~~~~~~~~~i~~~~~~~~~~~------~~~e~~wi~v~d~~~~~ 1467 (1689)
++++| |+ ++.++|.|+++++++|+.++| ++.|+|||||||++++-
T Consensus 224 ~~v~~~~~i~~~~~~~l~v~l~~~~~~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ 278 (339)
T 2q0z_X 224 YEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNS 278 (339)
T ss_dssp EEETTGGGCBTTSEEEEEEEEEECSSCCSSCCCTTCSSCCCCCEEEEEEETTTTE
T ss_pred EEEccCccccCCCcEEEEEEEEECCCCCCceeCCCCCCCCCCcEEEEEEECCCCE
Confidence 99996 75 788999999999999998877 47899999999998874
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.71 E-value=1.8e-16 Score=170.54 Aligned_cols=146 Identities=21% Similarity=0.374 Sum_probs=116.5
Q ss_pred cccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHH
Q psy14582 881 RPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASME 960 (1689)
Q Consensus 881 RpvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e 960 (1689)
.+..+++.++.++...+...+ . .++....++++||||++++.+..++..|...
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L---~-----~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~------------------- 58 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLL---K-----DVLMTENPDSCIIFCRTKEHVNQLTDELDDL------------------- 58 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHH---H-----HHHHHHCCSSEEEECSSHHHHHHHHHHHHHT-------------------
T ss_pred CcccceEEEEECChHHHHHHH---H-----HHHHhcCCCcEEEEECCHHHHHHHHHHHHHc-------------------
Confidence 344688888887765543322 1 2233345679999999999999999988752
Q ss_pred HHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhccc
Q psy14582 961 VLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRH 1040 (1689)
Q Consensus 961 ~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~ 1040 (1689)
...+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|
T Consensus 59 ------------------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~V------------- 107 (163)
T 2hjv_A 59 ------------------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLV------------- 107 (163)
T ss_dssp ------------------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEE-------------
T ss_pred ------------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEE-------------
Confidence 2356778999999999999999999999999999999999999999998
Q ss_pred ceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHh
Q psy14582 1041 IQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLL 1118 (1689)
Q Consensus 1041 i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll 1118 (1689)
| .+++| .++.+|+||+|||||.| ..|.+++++...+..++.++.
T Consensus 108 ----i-------~~~~p---------------------~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~i~ 151 (163)
T 2hjv_A 108 ----I-------NYDLP---------------------LEKESYVHRTGRTGRAG--NKGKAISFVTAFEKRFLADIE 151 (163)
T ss_dssp ----E-------ESSCC---------------------SSHHHHHHHTTTSSCTT--CCEEEEEEECGGGHHHHHHHH
T ss_pred ----E-------EeCCC---------------------CCHHHHHHhccccCcCC--CCceEEEEecHHHHHHHHHHH
Confidence 3 22333 45899999999999998 789999999988877776643
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=173.22 Aligned_cols=151 Identities=20% Similarity=0.272 Sum_probs=112.8
Q ss_pred ccceEEEEEeechhh-HHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHH
Q psy14582 882 PVALEQQYIGVTEKK-ALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASME 960 (1689)
Q Consensus 882 pvpL~~~~~~~~~~~-~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e 960 (1689)
+..+.|.++.++... +.. .+ ..++.....+++||||++++.+..++..|...
T Consensus 5 ~~~i~q~~~~~~~~~~K~~---~L-----~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~------------------- 57 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQ---AL-----CNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD------------------- 57 (175)
T ss_dssp BCCEEEEEEECSSHHHHHH---HH-----HHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT-------------------
T ss_pred cCCceEEEEEcCChHhHHH---HH-----HHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc-------------------
Confidence 446788888877543 222 11 12334445689999999999999999888642
Q ss_pred HHHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhccc
Q psy14582 961 VLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRH 1040 (1689)
Q Consensus 961 ~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~ 1040 (1689)
..++.++||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|
T Consensus 58 ------------------~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~V------------- 106 (175)
T 2rb4_A 58 ------------------GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIV------------- 106 (175)
T ss_dssp ------------------TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEE-------------
T ss_pred ------------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEE-------------
Confidence 2357888999999999999999999999999999999999999999888
Q ss_pred ceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHh
Q psy14582 1041 IQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLL 1118 (1689)
Q Consensus 1041 i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll 1118 (1689)
| .+++|.. ...+.++.+|+||+|||||.| ..|.+++++...+...+.++.
T Consensus 107 ----i-------~~d~p~~---------------~~~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~i~ 156 (175)
T 2rb4_A 107 ----V-------NFDLPVK---------------QGEEPDYETYLHRIGRTGRFG--KKGLAFNMIEVDELPSLMKIQ 156 (175)
T ss_dssp ----E-------ESSCCC-----------------CCSCCHHHHHHHHCBC------CCEEEEEEECGGGHHHHHHHH
T ss_pred ----E-------EeCCCCC---------------ccccCCHHHHHHHhcccccCC--CCceEEEEEccchHHHHHHHH
Confidence 3 3444421 112357999999999999998 789999999998877666543
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.69 E-value=1.3e-16 Score=173.21 Aligned_cols=144 Identities=20% Similarity=0.328 Sum_probs=113.1
Q ss_pred ceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHH
Q psy14582 884 ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLR 963 (1689)
Q Consensus 884 pL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~ 963 (1689)
.+.|.++.++...+...+ . .+++....+++||||+++..+..++..|...
T Consensus 5 ~i~q~~~~~~~~~K~~~L-------~-~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------------------- 54 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKNRKL-------F-DLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------------------- 54 (172)
T ss_dssp CCEEEEEECCGGGHHHHH-------H-HHHHHSCCSSEEEECSSHHHHHHHHHHHHHT----------------------
T ss_pred CeEEEEEECChHHHHHHH-------H-HHHHhCCCCcEEEEECCHHHHHHHHHHHHhc----------------------
Confidence 567888877765543321 1 2334456689999999999999999988752
Q ss_pred HhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceE
Q psy14582 964 TEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQV 1043 (1689)
Q Consensus 964 ~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~v 1043 (1689)
..++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|
T Consensus 55 ---------------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~V---------------- 103 (172)
T 1t5i_A 55 ---------------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA---------------- 103 (172)
T ss_dssp ---------------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEE----------------
T ss_pred ---------------CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEE----------------
Confidence 2356788999999999999999999999999999999999999999998
Q ss_pred EEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhh
Q psy14582 1044 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLN 1119 (1689)
Q Consensus 1044 LVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 1119 (1689)
| .+++| .++.+|+||+|||||.| ..|.++++++..+...+.+.+.
T Consensus 104 -i-------~~d~p---------------------~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~~l~ 148 (172)
T 1t5i_A 104 -F-------NYDMP---------------------EDSDTYLHRVARAGRFG--TKGLAITFVSDENDAKILNDVQ 148 (172)
T ss_dssp -E-------ESSCC---------------------SSHHHHHHHHHHHTGGG--CCCEEEEEECSHHHHHHHHHHH
T ss_pred -E-------EECCC---------------------CCHHHHHHHhcccccCC--CCcEEEEEEcChhHHHHHHHHH
Confidence 3 23333 35899999999999998 7899999998765444444443
No 81
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.69 E-value=2.4e-16 Score=177.09 Aligned_cols=144 Identities=24% Similarity=0.343 Sum_probs=110.5
Q ss_pred ccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHH
Q psy14582 882 PVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEV 961 (1689)
Q Consensus 882 pvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~ 961 (1689)
|+.+.+..+..+...+... +. .++....++++||||++++.+..++..|...
T Consensus 3 ~i~~~~~~~~~~~~~k~~~---l~-----~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------------------- 54 (212)
T 3eaq_A 3 PVTYEEEAVPAPVRGRLEV---LS-----DLLYVASPDRAMVFTRTKAETEEIAQGLLRL-------------------- 54 (212)
T ss_dssp -CCBCCEEEECCTTSHHHH---HH-----HHHHHHCCSCEEEECSSHHHHHHHHHHHHHH--------------------
T ss_pred CcceeeeEEeCCHHHHHHH---HH-----HHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc--------------------
Confidence 4444555555554443322 11 2334455789999999999999999988753
Q ss_pred HHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccc
Q psy14582 962 LRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHI 1041 (1689)
Q Consensus 962 l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i 1041 (1689)
..++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|
T Consensus 55 -----------------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~V-------------- 103 (212)
T 3eaq_A 55 -----------------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLV-------------- 103 (212)
T ss_dssp -----------------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEE--------------
T ss_pred -----------------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEE--------------
Confidence 2356778999999999999999999999999999999999999999999
Q ss_pred eEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHH
Q psy14582 1042 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSL 1117 (1689)
Q Consensus 1042 ~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 1117 (1689)
| .+++| .++.+|+||+|||||.| ..|.++++++..+...+..+
T Consensus 104 ---i-------~~~~p---------------------~~~~~~~qr~GR~gR~g--~~g~~~~l~~~~~~~~~~~i 146 (212)
T 3eaq_A 104 ---V-------HYRLP---------------------DRAEAYQHRSGRTGRAG--RGGRVVLLYGPRERRDVEAL 146 (212)
T ss_dssp ---E-------ESSCC---------------------SSHHHHHHHHTTBCCCC----BEEEEEECGGGHHHHHHH
T ss_pred ---E-------ECCCC---------------------cCHHHHHHHhcccCCCC--CCCeEEEEEchhHHHHHHHH
Confidence 3 33333 35899999999999998 78999999998877666553
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.68 E-value=2.7e-16 Score=169.37 Aligned_cols=142 Identities=18% Similarity=0.378 Sum_probs=107.2
Q ss_pred ceEEEEEeechhh-HHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHH
Q psy14582 884 ALEQQYIGVTEKK-ALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVL 962 (1689)
Q Consensus 884 pL~~~~~~~~~~~-~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l 962 (1689)
.++|.++.++... +... + ..+++....+++||||++++.+..++..|...
T Consensus 3 ~i~~~~~~~~~~~~K~~~---l-----~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--------------------- 53 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYEC---L-----TDLYDSISVTQAVIFCNTRRKVEELTTKLRND--------------------- 53 (165)
T ss_dssp -CEEEEEEEESGGGHHHH---H-----HHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT---------------------
T ss_pred CcEEEEEECCcchhHHHH---H-----HHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------------------
Confidence 3567777766544 3221 1 12334446789999999999999999988652
Q ss_pred HHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccce
Q psy14582 963 RTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQ 1042 (1689)
Q Consensus 963 ~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~ 1042 (1689)
..++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|
T Consensus 54 ----------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~V--------------- 102 (165)
T 1fuk_A 54 ----------------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV--------------- 102 (165)
T ss_dssp ----------------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEE---------------
T ss_pred ----------------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEE---------------
Confidence 2357788999999999999999999999999999999999999999998
Q ss_pred EEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHH
Q psy14582 1043 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSL 1117 (1689)
Q Consensus 1043 vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 1117 (1689)
| .+++| .++.+|+||+|||||.| ..|.++++++..+...+..+
T Consensus 103 --i-------~~~~p---------------------~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~~ 145 (165)
T 1fuk_A 103 --I-------NYDLP---------------------ANKENYIHRIGRGGRFG--RKGVAINFVTNEDVGAMREL 145 (165)
T ss_dssp --E-------ESSCC---------------------SSGGGGGGSSCSCC-------CEEEEEEETTTHHHHHHH
T ss_pred --E-------EeCCC---------------------CCHHHHHHHhcccccCC--CCceEEEEEcchHHHHHHHH
Confidence 3 22333 35789999999999998 78999999998887766654
No 83
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.68 E-value=4.1e-15 Score=193.92 Aligned_cols=112 Identities=12% Similarity=0.150 Sum_probs=86.8
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.+.++|||++++..+..++..|...+ ..+..+||+++..+|..
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g-------------------------------------~~~~~l~G~~~~~~R~~ 457 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRR-------------------------------------YLYVRLDGTMSIKKRAK 457 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHT-------------------------------------CCEEEECSSCCHHHHHH
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCC-------------------------------------CCEEEEeCCCCHHHHHH
Confidence 46799999999998888877775422 23456699999999999
Q ss_pred HHHHHhcCCe---EEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCC
Q psy14582 997 VEDLFADRHI---QVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEK 1073 (1689)
Q Consensus 997 ve~~F~~g~i---~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~ 1073 (1689)
+.+.|++|.. .+|++|.++++|+|++++++| .+||+.
T Consensus 458 ~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~V---------------------------------------i~~d~~- 497 (644)
T 1z3i_X 458 IVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRL---------------------------------------VMFDPD- 497 (644)
T ss_dssp HHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEE---------------------------------------EECSCC-
T ss_pred HHHHhcCCCCCcEEEEEecccccCCcccccCCEE---------------------------------------EEECCC-
Confidence 9999999865 488888888888888887777 235543
Q ss_pred CcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1074 GRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1074 ~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
.++..+.|++||++|.|-.....++-+.....
T Consensus 498 -----wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 498 -----WNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp -----SSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred -----CCccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 46999999999999999655556665555543
No 84
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=7.7e-15 Score=196.01 Aligned_cols=112 Identities=18% Similarity=0.194 Sum_probs=87.0
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.++++|||+..+..+..++..|...+ ..+..+||+++..+|..
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~g-------------------------------------~~~~~i~G~~~~~eR~~ 613 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIKG-------------------------------------INFQRLDGTVPSAQRRI 613 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHT-------------------------------------CCCEEESTTSCHHHHHH
T ss_pred CCCeEEEEechHHHHHHHHHHHHhCC-------------------------------------CCEEEEeCCCCHHHHHH
Confidence 36799999999998888888776432 23556699999999999
Q ss_pred HHHHHhcCCe---EEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCC
Q psy14582 997 VEDLFADRHI---QVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEK 1073 (1689)
Q Consensus 997 ve~~F~~g~i---~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~ 1073 (1689)
+++.|++|.. .+|++|.+++.|||++.+++| | +||+.
T Consensus 614 ~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~V-----------------I----------------------~~D~~- 653 (800)
T 3mwy_W 614 SIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTV-----------------V----------------------IFDSD- 653 (800)
T ss_dssp HHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEE-----------------E----------------------ESSCC-
T ss_pred HHHHhhCCCCCceEEEEecccccCCCCccccceE-----------------E----------------------EecCC-
Confidence 9999998654 488888888888888877776 2 35543
Q ss_pred CcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCc
Q psy14582 1074 GRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110 (1689)
Q Consensus 1074 ~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~ 1110 (1689)
.++..+.|++|||+|.|-.+...++.++....
T Consensus 654 -----wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 654 -----WNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp -----SCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred -----CChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 46889999999999999766667776666654
No 85
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.65 E-value=6.7e-16 Score=169.64 Aligned_cols=145 Identities=20% Similarity=0.266 Sum_probs=99.8
Q ss_pred ccceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHH
Q psy14582 882 PVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEV 961 (1689)
Q Consensus 882 pvpL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~ 961 (1689)
+..+.+.+..++...+... +.+.+.....++++||||++++.+..++..|...
T Consensus 17 ~~~i~q~~~~v~~~~K~~~-------L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-------------------- 69 (185)
T 2jgn_A 17 SENITQKVVWVEESDKRSF-------LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-------------------- 69 (185)
T ss_dssp CTTEEEEEEECCGGGHHHH-------HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT--------------------
T ss_pred CCCceEEEEEeCcHHHHHH-------HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc--------------------
Confidence 3468888888876544332 2222223335689999999999999999988652
Q ss_pred HHHhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccc
Q psy14582 962 LRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHI 1041 (1689)
Q Consensus 962 l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i 1041 (1689)
..++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|
T Consensus 70 -----------------g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~V-------------- 118 (185)
T 2jgn_A 70 -----------------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHV-------------- 118 (185)
T ss_dssp -----------------TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEE--------------
T ss_pred -----------------CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEE--------------
Confidence 2356778999999999999999999999999999999999999999988
Q ss_pred eEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHH
Q psy14582 1042 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSL 1117 (1689)
Q Consensus 1042 ~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 1117 (1689)
| .+++| .++.+|+||+|||||.| ..|.++++++..+...+..+
T Consensus 119 ---I-------~~d~p---------------------~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~l 161 (185)
T 2jgn_A 119 ---I-------NFDLP---------------------SDIEEYVHRIGRTGRVG--NLGLATSFFNERNINITKDL 161 (185)
T ss_dssp ---E-------ESSCC---------------------SSHHHHHHHHTTBCCTT--SCEEEEEEECGGGGGGHHHH
T ss_pred ---E-------EeCCC---------------------CCHHHHHHHccccCCCC--CCcEEEEEEchhhHHHHHHH
Confidence 3 23333 35899999999999998 78999999988776555543
No 86
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.64 E-value=2.4e-14 Score=183.10 Aligned_cols=64 Identities=17% Similarity=0.003 Sum_probs=54.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
|+ .|+++|..++|.++ .|+ |++|+||||||++|.+|++.... .+..+++|+||++||.|.+..+
T Consensus 77 G~-~Pt~VQ~~~ip~Ll-qG~--IaeakTGeGKTLvf~Lp~~L~aL-----------~G~qv~VvTPTreLA~Qdae~m 140 (997)
T 2ipc_A 77 GM-RHFDVQLIGGAVLH-EGK--IAEMKTGEGKTLVATLAVALNAL-----------TGKGVHVVTVNDYLARRDAEWM 140 (997)
T ss_dssp CC-CCCHHHHHHHHHHH-TTS--EEECCSTHHHHHHHHHHHHHHHT-----------TCSCCEEEESSHHHHHHHHHHH
T ss_pred CC-CCcHHHHhhccccc-CCc--eeeccCCCchHHHHHHHHHHHHH-----------hCCCEEEEeCCHHHHHHHHHHH
Confidence 88 99999999999888 676 99999999999999999964333 1236999999999999998544
No 87
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.63 E-value=1.3e-15 Score=179.43 Aligned_cols=141 Identities=23% Similarity=0.326 Sum_probs=107.4
Q ss_pred ceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHH
Q psy14582 884 ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLR 963 (1689)
Q Consensus 884 pL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~ 963 (1689)
.+++.++.++...+... +. .++....++++||||++++.+..++..|...
T Consensus 2 ~v~~~~i~~~~~~K~~~---L~-----~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~---------------------- 51 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEV---LS-----DLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------------------- 51 (300)
T ss_dssp CSEEEEEECCSSSHHHH---HH-----HHHHHHCCSSEEEECSSHHHHHHHHHHHHTT----------------------
T ss_pred ceEEEEEECCHHHHHHH---HH-----HHHHhcCCCCEEEEECCHHHHHHHHHHHHhC----------------------
Confidence 34566666665544332 11 2333445789999999999999999887642
Q ss_pred HhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceE
Q psy14582 964 TEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQV 1043 (1689)
Q Consensus 964 ~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~v 1043 (1689)
..++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|
T Consensus 52 ---------------g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~V---------------- 100 (300)
T 3i32_A 52 ---------------GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLV---------------- 100 (300)
T ss_dssp ---------------TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEE----------------
T ss_pred ---------------CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEE----------------
Confidence 2456788999999999999999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHH
Q psy14582 1044 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLS 1116 (1689)
Q Consensus 1044 LVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 1116 (1689)
| ++++|. +..+|+||+|||||.| ..|.|+++++..+..++..
T Consensus 101 -I-------~~d~p~---------------------s~~~y~Qr~GRagR~g--~~G~~i~l~~~~e~~~~~~ 142 (300)
T 3i32_A 101 -V-------HYRMPD---------------------RAEAYQHRSGRTGRAG--RGGRVVLLYGPRERRDVEA 142 (300)
T ss_dssp -E-------ESSCCS---------------------STTHHHHHHTCCC-------CEEEEEECSSTHHHHHH
T ss_pred -E-------EcCCCC---------------------CHHHHHHHccCcCcCC--CCceEEEEeChHHHHHHHH
Confidence 3 344442 4779999999999998 7799999999888766554
No 88
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.60 E-value=5e-15 Score=163.50 Aligned_cols=133 Identities=19% Similarity=0.277 Sum_probs=102.5
Q ss_pred ceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHH
Q psy14582 884 ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLR 963 (1689)
Q Consensus 884 pL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~ 963 (1689)
.+.+.+..++...+... +.+ ++.. .++++||||+++..+..++..|...+
T Consensus 29 ~i~q~~~~~~~~~K~~~-------L~~-~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~g--------------------- 78 (191)
T 2p6n_A 29 DVIQEVEYVKEEAKMVY-------LLE-CLQK-TPPPVLIFAEKKADVDAIHEYLLLKG--------------------- 78 (191)
T ss_dssp CSEEEEEECCGGGHHHH-------HHH-HHTT-SCSCEEEECSCHHHHHHHHHHHHHHT---------------------
T ss_pred CceEEEEEcChHHHHHH-------HHH-HHHh-CCCCEEEEECCHHHHHHHHHHHHHcC---------------------
Confidence 56777777765543321 112 2222 24689999999999999999887532
Q ss_pred HhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceE
Q psy14582 964 TEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQV 1043 (1689)
Q Consensus 964 ~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~v 1043 (1689)
..+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|
T Consensus 79 ----------------~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~V---------------- 126 (191)
T 2p6n_A 79 ----------------VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHV---------------- 126 (191)
T ss_dssp ----------------CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEE----------------
T ss_pred ----------------CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEE----------------
Confidence 245677999999999999999999999999999999999999999998
Q ss_pred EEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCC
Q psy14582 1044 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS 1109 (1689)
Q Consensus 1044 LVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~ 1109 (1689)
| .+++| .++.+|+||+|||||.| ..|.++++++..
T Consensus 127 -I-------~~d~p---------------------~~~~~~~qr~GR~gR~g--~~g~~i~l~~~~ 161 (191)
T 2p6n_A 127 -I-------NYDMP---------------------EEIENYVHRIGRTGCSG--NTGIATTFINKA 161 (191)
T ss_dssp -E-------ESSCC---------------------SSHHHHHHHHTTSCC-----CCEEEEEECTT
T ss_pred -E-------EeCCC---------------------CCHHHHHHHhCccccCC--CCcEEEEEEcCc
Confidence 3 23333 35899999999999998 789999999875
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.28 E-value=9.2e-16 Score=166.11 Aligned_cols=117 Identities=20% Similarity=0.306 Sum_probs=97.1
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHH
Q psy14582 916 AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRT 995 (1689)
Q Consensus 916 ~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~ 995 (1689)
..++++||||++++.+..++..|... ..++..+||+|++.+|.
T Consensus 28 ~~~~~~iVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~g~~~~~~r~ 70 (170)
T 2yjt_D 28 PEATRSIVFVRKRERVHELANWLREA-------------------------------------GINNCYLEGEMVQGKRN 70 (170)
Confidence 34578999999999999999888652 23456779999999999
Q ss_pred HHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCc
Q psy14582 996 LVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGR 1075 (1689)
Q Consensus 996 ~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~ 1075 (1689)
.+++.|++|.++|||||+++++|+|+|++++| | .+++|
T Consensus 71 ~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~V-----------------i-------~~~~p------------------ 108 (170)
T 2yjt_D 71 EAIKRLTEGRVNVLVATDVAARGIDIPDVSHV-----------------F-------NFDMP------------------ 108 (170)
Confidence 99999999999999999999999999999988 3 22333
Q ss_pred ceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHH
Q psy14582 1076 WVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLS 1116 (1689)
Q Consensus 1076 ~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 1116 (1689)
.++.+|+||+|||||.| ..|.+++++...+...+..
T Consensus 109 ---~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~ 144 (170)
T 2yjt_D 109 ---RSGDTYLHRIGRTARAG--RKGTAISLVEAHDHLLLGK 144 (170)
Confidence 35789999999999988 7899999998776555443
No 90
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.49 E-value=2.1e-14 Score=183.40 Aligned_cols=66 Identities=24% Similarity=0.245 Sum_probs=53.0
Q ss_pred CCCCCCHHHHHHHHH---HHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhh
Q psy14582 478 DFKTLNRIQSRLCKS---ALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 554 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~---al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~ 554 (1689)
|| +|+|+|.+++.. ++..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+..
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------~~~~~~~~~t~~l~~q~~~ 69 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------KKKVLIFTRTHSQLDSIYK 69 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------TCEEEEEESCHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHHH
Confidence 67 799999998654 34578999999999999999999998652 2489999999999999997
Q ss_pred cccc
Q psy14582 555 NFGK 558 (1689)
Q Consensus 555 ~f~k 558 (1689)
++.+
T Consensus 70 ~~~~ 73 (540)
T 2vl7_A 70 NAKL 73 (540)
T ss_dssp HHGG
T ss_pred HHHh
Confidence 7654
No 91
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.46 E-value=7.9e-14 Score=155.81 Aligned_cols=70 Identities=29% Similarity=0.439 Sum_probs=59.0
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
....|+|+|.++++.++ .+++++++||||+|||++|+++++..+...... ..+.+++|++|+++|+.|++
T Consensus 30 ~~~~l~~~Q~~~i~~~~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-----~~~~~~lil~p~~~L~~q~~ 99 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPAL-EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLF 99 (216)
T ss_dssp CCCCCCHHHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-----TCCCCEEEEESSHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHh-cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-----cCCCcEEEEECHHHHHHHHH
Confidence 55689999999999888 689999999999999999999999887654211 13458999999999999944
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.42 E-value=3.3e-12 Score=163.65 Aligned_cols=64 Identities=28% Similarity=0.367 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHH---HHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 481 TLNRIQSRLCKS---ALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 481 ~~tpiQ~~aip~---al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
+++|.|.+++.. ++..|+++++.||||+|||++|++|++. . +.+++|++||++|+.|+..++.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~--~------------~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE--V------------KPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH--H------------CSEEEEEESSGGGHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh--C------------CCeEEEEcCCHHHHHHHHHHHH
Confidence 689999997764 3457999999999999999999999987 1 2489999999999999987664
Q ss_pred c
Q psy14582 558 K 558 (1689)
Q Consensus 558 k 558 (1689)
+
T Consensus 69 ~ 69 (551)
T 3crv_A 69 K 69 (551)
T ss_dssp T
T ss_pred H
Confidence 4
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.42 E-value=2.5e-12 Score=166.26 Aligned_cols=69 Identities=23% Similarity=0.324 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHH---HHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 480 KTLNRIQSRLCKS---ALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 480 ~~~tpiQ~~aip~---al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
.+|+|.|.+.+.. ++.+|++++++||||+|||++|++|++..+... +.+++|++||++|+.|+.+++
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----------~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----------KLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----------TCEEEEEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----------CCeEEEECCCHHHHHHHHHHH
Confidence 3689999998764 355799999999999999999999999987642 358999999999999998776
Q ss_pred cc
Q psy14582 557 GK 558 (1689)
Q Consensus 557 ~k 558 (1689)
.+
T Consensus 72 ~~ 73 (620)
T 4a15_A 72 RS 73 (620)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 94
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.2e-12 Score=149.19 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
..++++|.++++.+. .|++++++||||||||.++.++++..+..... ..+.++++++|+|+|+.|+.+.+.
T Consensus 60 ~p~~~~q~~~i~~i~-~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~------~~~~~~l~~~p~~~la~q~~~~~~ 130 (235)
T 3llm_A 60 LPVKKFESEILEAIS-QNSVVIIRGATGCGKTTQVPQFILDDFIQNDR------AAECNIVVTQPRRISAVSVAERVA 130 (235)
T ss_dssp SGGGGGHHHHHHHHH-HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC------GGGCEEEEEESSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh-cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC------CCceEEEEeccchHHHHHHHHHHH
Confidence 457899999999877 79999999999999999999999887764311 134689999999999999976553
No 95
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.38 E-value=4.7e-13 Score=156.84 Aligned_cols=68 Identities=22% Similarity=0.264 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
-+|+|+|.++++.++ .+++.|++||||||||++|++++...+.. .+.+++|++||++|+.|+.+++.+
T Consensus 112 ~~l~~~Q~~ai~~~l-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------~~~~~lil~Pt~~L~~q~~~~l~~ 179 (282)
T 1rif_A 112 IEPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN----------YEGKILIIVPTTALTTQMADDFVD 179 (282)
T ss_dssp CCCCHHHHHHHHHHH-HHSEEEECCCTTSCHHHHHHHHHHHHHHH----------CSSEEEEECSSHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHH-hcCCeEEEcCCCCCcHHHHHHHHHHHHHc----------CCCeEEEEECCHHHHHHHHHHHHH
Confidence 379999999999888 45788999999999999999998876653 123899999999999999876643
No 96
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.37 E-value=3.6e-13 Score=153.80 Aligned_cols=124 Identities=19% Similarity=0.300 Sum_probs=81.2
Q ss_pred cccccccCCCccccccccCCC-------CchhhccCCCceEecCCCCCCCCCCCCCccCCCCccHHHHHhccCCCCCCHH
Q psy14582 413 EDLQFSSGSHFMSNKRCELPD-------GSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNRI 485 (1689)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~lp~-------g~~~~~~~~yeev~vp~~~~~p~~~~~~l~~~~~Lp~~~~~~f~g~~~~tpi 485 (1689)
..+.|.+|.+++. .++.+|. +..+...+.|.++.- ..................+| .+.....|+++
T Consensus 25 ~~~~~~~g~~~~~-~~~~l~~~~w~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~~~~p-----~~~~~~~l~~~ 97 (237)
T 2fz4_A 25 AEIYYERGTIVVK-GDAHVPHAKFDSRSGTYRALAFRYRDIIE-YFESNGIEFVDNAADPIPTP-----YFDAEISLRDY 97 (237)
T ss_dssp EEEEEETTEEEEE-SCSCCTTCEEETTTTEEEEEGGGHHHHHH-HHHHTTCCEEEESCCCCCCC-----CCCCCCCCCHH
T ss_pred eEEEEecceEEEe-ccccCCCceeccccchhhcchhhHHHHHH-HHHHcCCCccccccccCCCc-----cccCCCCcCHH
Confidence 4678999999884 5668887 454444444443321 11111110000111111222 22334589999
Q ss_pred HHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 486 QSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 486 Q~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
|.++++.++ .++++|++||||+|||.+++.++... +.+++|++||++|+.|+...+.+
T Consensus 98 Q~~ai~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~--------------~~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 98 QEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp HHHHHHHHT-TTSEEEEEESSSTTHHHHHHHHHHHS--------------CSCEEEEESSHHHHHHHHHHHGG
T ss_pred HHHHHHHHH-hCCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEeCCHHHHHHHHHHHHh
Confidence 999999877 67789999999999999999887652 23799999999999998866643
No 97
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.82 E-value=1.1e-08 Score=118.95 Aligned_cols=112 Identities=12% Similarity=0.107 Sum_probs=74.4
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTL 996 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ 996 (1689)
.+.++||||+++..+..++..|... ....+..+||+++..+|..
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~------------------------------------~g~~~~~l~G~~~~~~R~~ 154 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKE------------------------------------LNTEVPFLYGELSKKERDD 154 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH------------------------------------HCSCCCEECTTSCHHHHHH
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHh------------------------------------cCCcEEEEECCCCHHHHHH
Confidence 4689999999999988888877642 0123456699999999999
Q ss_pred HHHHHhcC-CeE-EEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCC
Q psy14582 997 VEDLFADR-HIQ-VLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG 1074 (1689)
Q Consensus 997 ve~~F~~g-~i~-VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~ 1074 (1689)
+.+.|++| .++ +|++|+++++|+|++++++| | .||+.
T Consensus 155 ~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~V-----------------I----------------------~~d~~-- 193 (271)
T 1z5z_A 155 IISKFQNNPSVKFIVLSVKAGGFGINLTSANRV-----------------I----------------------HFDRW-- 193 (271)
T ss_dssp HHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEE-----------------E----------------------ECSCC--
T ss_pred HHHHhcCCCCCCEEEEehhhhcCCcCcccCCEE-----------------E----------------------EECCC--
Confidence 99999999 777 78899999999999988887 2 34442
Q ss_pred cceecCHHHHHHHhcccCCCCCCCccEEEEEecCC
Q psy14582 1075 RWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS 1109 (1689)
Q Consensus 1075 ~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~ 1109 (1689)
.++..+.|++||++|.|-.....++.+....
T Consensus 194 ----wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 194 ----WNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp ----SCTTTC--------------CCEEEEEEETT
T ss_pred ----CChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 3477899999999999954444455555544
No 98
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.82 E-value=2.9e-08 Score=123.36 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=52.7
Q ss_pred eeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1026 VVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1026 ~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
.-+|..+++.|++|.+++||||+++++|+|+|...+||. --.+.+....+.|+||.| +.|.
T Consensus 336 ~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~-------------~d~p~~~~~y~qriGR~g--R~g~ 396 (434)
T 2db3_A 336 QSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN-------------YDMPSKIDDYVHRIGRTG--RVGN 396 (434)
T ss_dssp HHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE-------------SSCCSSHHHHHHHHTTSS--CTTC
T ss_pred HHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE-------------ECCCCCHHHHHHHhcccc--cCCC
Confidence 348999999999999999999999999999998877764 134678999999999998 7764
No 99
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.64 E-value=1.9e-07 Score=119.91 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=53.9
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
++..-+|..+++.|++|.+++||||+++++|+|+|+..+||. --.+.+....+.|+||.| +.|..
T Consensus 375 ~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~-------------~~~p~s~~~y~Qr~GRag--R~g~~ 439 (563)
T 3i5x_A 375 KITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ-------------IGVPSELANYIHRIGRTA--RSGKE 439 (563)
T ss_dssp TSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE-------------ESCCSSTTHHHHHHTTSS--CTTCC
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE-------------ECCCCchhhhhhhcCccc--cCCCC
Confidence 334448999999999999999999999999999997666653 255678999999999998 77644
No 100
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.64 E-value=2.3e-07 Score=112.93 Aligned_cols=58 Identities=21% Similarity=0.189 Sum_probs=48.9
Q ss_pred eehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceec-CHHHHHHHhcccCCCCCCCcc
Q psy14582 1027 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVEL-GALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1027 V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~-s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
-+|..+++.|++|.+++||||.+++.|+|+|+-. .-+.+ .+.+....+.|+||.| +.|
T Consensus 287 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~--------------~Vi~~~~p~s~~~~~Qr~GR~~--R~g 345 (391)
T 1xti_A 287 EERLSRYQQFKDFQRRILVATNLFGRGMDIERVN--------------IAFNYDMPEDSDTYLHRVARAG--RFG 345 (391)
T ss_dssp HHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE--------------EEEESSCCSSHHHHHHHHCBCS--SSC
T ss_pred HHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC--------------EEEEeCCCCCHHHHHHhccccc--CCC
Confidence 3799999999999999999999999999999752 12344 4678999999999998 655
No 101
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.63 E-value=1.7e-07 Score=115.13 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=48.4
Q ss_pred eehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecC-HHHHHHHhcccCCCCCCCccE
Q psy14582 1027 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELG-ALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1027 V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s-~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
-+|..+++.|++|.+++||||+++++|+|+|... .-+.++ +.+..+.+.|+||.| +.|.
T Consensus 313 ~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~--------------~Vi~~~~p~s~~~~~Qr~GR~g--R~g~ 372 (417)
T 2i4i_A 313 RDREEALHQFRSGKSPILVATAVAARGLDISNVK--------------HVINFDLPSDIEEYVHRIGRTG--RVGN 372 (417)
T ss_dssp HHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEE--------------EEEESSCCSSHHHHHHHHTTBC--C--C
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccCC--------------EEEEEcCCCCHHHHHHhcCccc--cCCC
Confidence 3789999999999999999999999999999762 134554 577899999999998 6653
No 102
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.58 E-value=1.8e-08 Score=133.06 Aligned_cols=97 Identities=12% Similarity=0.088 Sum_probs=86.9
Q ss_pred hhHHHHhhhhhhhccCCCchhHHHHHHHHHHhhhhccCCCcccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhh
Q psy14582 1466 EAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLL 1545 (1689)
Q Consensus 1466 ~~~rll~a~vdi~s~~gwL~~~l~~m~l~QmivQa~w~~~s~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll 1545 (1689)
++.+|++||++|++..||. .+++|+|||.||+|.+.+||+|||||+...+++|.+++++|++||++++ ++..+++
T Consensus 596 ~a~~l~~a~~~i~~~~g~~----~l~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ll 670 (702)
T 2p6r_A 596 TAEWLSNAMNRIAEEVGNT----SVSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAEDIVRHR-EKVASLI 670 (702)
T ss_dssp HHHHHHHHHHHHHHHTTCC----SSTTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHTTTCCSHHHHHHTH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHH----HHHHHHHHHHcCCCcchHhhhcCCCCCHHHHHHHHHcCCCCHHHHHhhh-HHHHHHh
Confidence 4899999999999999998 8899999999999999999999999999999999999999999999999 8888888
Q ss_pred cCCHHHHHHHHHHHhcCCcEEEEEE
Q psy14582 1546 QLSESQLADVARFCNRYPNIELSYE 1570 (1689)
Q Consensus 1546 ~l~~~q~~~v~~~~~~~P~iei~~~ 1570 (1689)
+ +.+-+.+.+.+. +|.+++++.
T Consensus 671 ~--~~~~~~i~~~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 671 G--RGIAERVVEGIS-VKSLNPESA 692 (702)
T ss_dssp C--HHHHHHHHHHHH-HHC------
T ss_pred C--hhHHHHHHHhcC-CCccCcchh
Confidence 7 889999999999 999998754
No 103
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.57 E-value=9.8e-07 Score=107.87 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=50.8
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecC-HHHHHHHhcccCCCCCCCccE
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELG-ALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s-~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
...-+|..+++.|++|.+++||||.++++|+|+|+.. ..+.++ +.+....+.|+||.| +.|.
T Consensus 292 ~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~--------------~Vi~~~~p~s~~~~~Qr~GR~g--R~g~ 354 (400)
T 1s2m_A 292 MKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVN--------------VVINFDFPKTAETYLHRIGRSG--RFGH 354 (400)
T ss_dssp SCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEE--------------EEEESSCCSSHHHHHHHHCBSS--CTTC
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCC--------------EEEEeCCCCCHHHHHHhcchhc--CCCC
Confidence 3444789999999999999999999999999999762 134454 677889999999998 6663
No 104
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.56 E-value=1.4e-07 Score=116.27 Aligned_cols=80 Identities=21% Similarity=0.366 Sum_probs=59.4
Q ss_pred Ccee-EeccCCCHHHHHHHHHHHhcCCeEEEEE----cchhccCCCCCC-cceeehhhHHHHhhcccceEEEEccccccc
Q psy14582 980 YGFA-IHHAGMTRVDRTLVEDLFADRHIQVLVS----TATLAWGVNLPA-HTVVDRTLVEDLFADRHIQVLVSTATLAWG 1053 (1689)
Q Consensus 980 ~Gi~-~hHagl~~~dR~~ve~~F~~g~i~VLVa----T~vl~rGIDIp~-V~~V~R~~~~~~f~~g~i~vLVaT~TLa~G 1053 (1689)
..++ .+||. +|. ++.|++|.++|||| |+++++|+|+|+ |++| |
T Consensus 277 ~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~V-----------------I-------- 325 (414)
T 3oiy_A 277 FNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYV-----------------I-------- 325 (414)
T ss_dssp CCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEE-----------------E--------
T ss_pred CceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEE-----------------E--------
Confidence 3455 66763 444 88888888888888 888888888888 7877 2
Q ss_pred CCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCC--CccEEEEEecC
Q psy14582 1054 VNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYD--TKGEGVLITNH 1108 (1689)
Q Consensus 1054 vNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d--~~G~~iil~~~ 1108 (1689)
.||...+ .++.+|+||+|||||.|.+ ..|.+++++.+
T Consensus 326 --------------~~~~p~~----~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~ 364 (414)
T 3oiy_A 326 --------------FWGTPSG----PDVYTYIQASGRSSRILNGVLVKGVSVIFEED 364 (414)
T ss_dssp --------------EESCCTT----TCHHHHHHHHGGGCCEETTEECCEEEEEECCC
T ss_pred --------------EECCCCC----CCHHHHHHHhCccccCCCCCCcceEEEEEEcc
Confidence 2333210 4689999999999999866 68999999943
No 105
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.54 E-value=8.7e-08 Score=126.82 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=88.5
Q ss_pred hhhHHHHhhhhhhhccCCCchhHHHHHH-HHHHhhhhccCCCcccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHH
Q psy14582 1465 SEAIRLIQACVDVLSSNGWLSPAVAAME-VAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLR 1543 (1689)
Q Consensus 1465 ~~~~rll~a~vdi~s~~gwL~~~l~~m~-l~QmivQa~w~~~s~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ 1543 (1689)
.+|.+|++||++|+...||.. +..+|. |+|||.||+|...+||+|||||+...+++|.+.+++|+.||++++++++..
T Consensus 605 ~~a~~l~~a~~~i~~~~g~~~-~~~~l~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~ 683 (720)
T 2zj8_A 605 ETAEWLVYSLKEIAKVLGAYE-IVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLK 683 (720)
T ss_dssp HHHHHHHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHHHcCCCccchhhhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHH
Confidence 349999999999999999975 456665 999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCHHHHHHHHHHHhcCCc
Q psy14582 1544 LLQLSESQLADVARFCNRYPN 1564 (1689)
Q Consensus 1544 ll~l~~~q~~~v~~~~~~~P~ 1564 (1689)
+-.+.+++++++..++.++|.
T Consensus 684 ~~~~~~~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 684 IEGIGVKTVEAIFKFLGKNVK 704 (720)
T ss_dssp STTCCHHHHHHHHHHHC----
T ss_pred hHhHHHHHHHHHHHhcccccc
Confidence 866999999999999999997
No 106
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.53 E-value=6.1e-07 Score=110.17 Aligned_cols=63 Identities=24% Similarity=0.276 Sum_probs=53.2
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
...-+|..+++.|++|.+++||||+.+++|+|+|...+||. --.+.+....+.|+||.| +.|.
T Consensus 310 ~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~-------------~~~p~s~~~~~Qr~GR~g--R~g~ 372 (410)
T 2j0s_A 310 MPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN-------------YDLPNNRELYIHRIGRSG--RYGR 372 (410)
T ss_dssp SCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE-------------SSCCSSHHHHHHHHTTSS--GGGC
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE-------------ECCCCCHHHHHHhccccc--CCCC
Confidence 33448899999999999999999999999999999888874 144677899999999998 6553
No 107
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.51 E-value=1.9e-06 Score=105.56 Aligned_cols=67 Identities=27% Similarity=0.376 Sum_probs=54.2
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCH---HHHHHHhcccCCCCCCCc
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGA---LDVLQMLGRAGRPQYDTK 1099 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~---~d~lQm~GRAGR~g~d~~ 1099 (1689)
+...-+|..+++.|++|.+++||||+++++|+|+|+..+||. ||. +.+. .++.+.+.|+||.| +.
T Consensus 299 ~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~------p~~~~~~~s~~~~~Qr~GR~g--R~ 366 (412)
T 3fht_A 299 EMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN----FDL------PVDKDGNPDNETYLHRIGRTG--RF 366 (412)
T ss_dssp TSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE----SSC------CBCSSSSBCHHHHHHHHTTSS--CT
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE----ECC------CCCCCCCcchheeecccCccc--CC
Confidence 333448999999999999999999999999999999888874 432 2222 57899999999998 66
Q ss_pred cE
Q psy14582 1100 GE 1101 (1689)
Q Consensus 1100 G~ 1101 (1689)
|.
T Consensus 367 g~ 368 (412)
T 3fht_A 367 GK 368 (412)
T ss_dssp TC
T ss_pred CC
Confidence 63
No 108
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.50 E-value=1.9e-06 Score=110.97 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=53.0
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
...-+|..+++.|+.|.+++||||+++++|+|+|...+||. --.+.+....+.|+||.| +.|.
T Consensus 325 ~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~-------------~~~p~s~~~y~Qr~GRag--R~g~ 387 (579)
T 3sqw_A 325 ITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ-------------IGVPSELANYIHRIGRTA--RSGK 387 (579)
T ss_dssp SCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE-------------ESCCSSTTHHHHHHTTSS--CTTC
T ss_pred CCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE-------------cCCCCCHHHhhhhccccc--cCCC
Confidence 33448999999999999999999999999999997666653 255678999999999998 7664
No 109
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.50 E-value=3.2e-08 Score=127.83 Aligned_cols=71 Identities=15% Similarity=-0.005 Sum_probs=56.1
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeee----cCCCCcc-eec-CHHHHHHHhcccCCCCCCCcc
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIY----NPEKGRW-VEL-GALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~y----d~~~~~~-~~~-s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
+|..+++.|++|.+++||||+++++|+|+|...||..|..+. +...+++ +.+ .+.+..+.+.|+||.| +.|
T Consensus 389 ~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaG--R~g 465 (618)
T 2whx_A 389 TFDTEYPKTKLTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIG--RNP 465 (618)
T ss_dssp THHHHTTHHHHSCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSS--CCT
T ss_pred HHHHHHHhhcCCCcEEEEECcHHHcCcccCceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccC--CCC
Confidence 788899999999999999999999999999999998887433 2222222 222 3588889999999998 554
No 110
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.50 E-value=5.5e-07 Score=110.47 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=41.3
Q ss_pred eeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecC-HHHHHHHhcccCCCCCCCcc
Q psy14582 1026 VVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELG-ALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1026 ~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s-~~d~lQm~GRAGR~g~d~~G 1100 (1689)
.-+|..+++.|++|.+++||||.+++.|+|+|... .-+.+. +.+..+.+.|+||.| +.|
T Consensus 316 ~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~--------------~Vi~~~~p~s~~~~~Qr~GR~g--R~g 375 (414)
T 3eiq_A 316 QKERDVIMREFRSGSSRVLITTDLLARGIDVQQVS--------------LVINYDLPTNRENYIHRIGRGG--RFG 375 (414)
T ss_dssp HHHHHHHHHHHSCC---CEEECSSCC--CCGGGCS--------------CEEESSCCSSTHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHcCCCcEEEECCccccCCCccCCC--------------EEEEeCCCCCHHHhhhhcCccc--CCC
Confidence 33889999999999999999999999999999661 233443 567889999999998 655
No 111
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.50 E-value=1.8e-07 Score=116.09 Aligned_cols=70 Identities=16% Similarity=0.044 Sum_probs=55.5
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceee---ecCCCCcce-ecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQI---YNPEKGRWV-ELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~---yd~~~~~~~-~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
.|..+++.|++|.+++||||+++++|+|+|...||..|+.+ || ..+..+ .-.+.+..|...|+||.| +.|
T Consensus 205 ~r~~~~~~f~~g~~~vLVaT~v~e~GiDip~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~G--R~g 278 (431)
T 2v6i_A 205 TFESEYPKCKSEKWDFVITTDISEMGANFKADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIG--RNP 278 (431)
T ss_dssp THHHHTTHHHHSCCSEEEECGGGGTSCCCCCSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSS--CCT
T ss_pred cHHHHHHhhcCCCCeEEEECchHHcCcccCCcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccC--CCC
Confidence 68899999999999999999999999999998898887654 33 111111 224568899999999998 555
No 112
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.48 E-value=5.2e-07 Score=117.36 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=50.2
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCccee--------c-CHHHHHHHhcccCCCC
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVE--------L-GALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~--------~-s~~d~lQm~GRAGR~g 1095 (1689)
+|..+++.|++|.+++||||.++++|+|+|...||..|+. |++.. ..+ + .+.+.-+.+.|+||.|
T Consensus 444 eR~~v~~~F~~g~~~VLVaTdv~e~GIDipv~~VI~~g~~-~~p~v--i~da~~r~~ll~d~P~s~~~y~Qr~GRaG 517 (673)
T 2wv9_A 444 SYDTEYPKCKNGDWDFVITTDISEMGANFGASRVIDCRKS-VKPTI--LDEGEGRVILSVPSAITSASAAQRRGRVG 517 (673)
T ss_dssp SHHHHGGGGGTCCCSEEEECGGGGTTCCCCCSEEEECCEE-CCEEE--ECSTTCEEEECCSEECCHHHHHHHHTTSS
T ss_pred HHHHHHHHHHCCCceEEEECchhhcceeeCCcEEEECCCc-cccee--eecccccceecccCCCCHHHHHHHhhccC
Confidence 7899999999999999999999999999998888876653 22110 000 0 2456689999999998
No 113
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.46 E-value=2.3e-06 Score=103.85 Aligned_cols=68 Identities=25% Similarity=0.432 Sum_probs=51.9
Q ss_pred ceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1025 TVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1025 ~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
..-+|..+++.|++|.+++||||+++++|+|+|.-.+||. || -.+...+..+....+-|+||.| +.|.
T Consensus 278 ~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~---~p~~~~~~~s~~~~~Qr~GR~g--R~g~ 345 (395)
T 3pey_A 278 QTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN----YD---LPTLANGQADPATYIHRIGRTG--RFGR 345 (395)
T ss_dssp CHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE----SS---CCBCTTSSBCHHHHHHHHTTSS--CTTC
T ss_pred CHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE----cC---CCCCCcCCCCHHHhhHhccccc--cCCC
Confidence 3348899999999999999999999999999998877774 22 0000111128899999999998 6653
No 114
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.46 E-value=1.1e-06 Score=112.98 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=53.8
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
+..--+|..+++.|+.|.+++||||.++++|+|+|...+||. --.+.+.....-|+||+| +.|
T Consensus 300 ~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~-------------~~~p~s~~~y~Qr~GRaG--R~G 362 (591)
T 2v1x_A 300 NLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH-------------HSMSKSMENYYQESGRAG--RDD 362 (591)
T ss_dssp TSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE-------------SSCCSSHHHHHHHHTTSC--TTS
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE-------------eCCCCCHHHHHHHhccCC--cCC
Confidence 344448999999999999999999999999999998888874 145678999999999998 665
No 115
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.44 E-value=4.3e-07 Score=115.45 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=53.0
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
.+--+|..+++.|++|.+++||||+++++|+|+|...+||. --.+.+.....-|+||.| +.|
T Consensus 270 l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~-------------~~~p~s~~~y~Qr~GRaG--R~g 331 (523)
T 1oyw_A 270 LENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH-------------FDIPRNIESYYQETGRAG--RDG 331 (523)
T ss_dssp SCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE-------------SSCCSSHHHHHHHHTTSC--TTS
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE-------------ECCCCCHHHHHHHhcccc--CCC
Confidence 33347999999999999999999999999999998777763 145788999999999998 666
No 116
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.43 E-value=1.3e-07 Score=118.86 Aligned_cols=66 Identities=27% Similarity=0.375 Sum_probs=0.0
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCH---HHHHHHhcccCCCCCCCc
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGA---LDVLQMLGRAGRPQYDTK 1099 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~---~d~lQm~GRAGR~g~d~~ 1099 (1689)
+...-+|..+++.|++|.+++||||.++++|+|+|+.++||. ||. +.+. .++.+.+.|+||.| +.
T Consensus 366 ~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~----~d~------p~~~~~~~s~~~~~Qr~GRag--R~ 433 (479)
T 3fmp_B 366 EMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN----FDL------PVDKDGNPDNETYLHRIGRTG--RF 433 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE----ecC------CCCCccCCCHHHHHHHhcccc--cC
Confidence 334448899999999999999999999999999999988874 442 1111 47889999999998 65
Q ss_pred c
Q psy14582 1100 G 1100 (1689)
Q Consensus 1100 G 1100 (1689)
|
T Consensus 434 g 434 (479)
T 3fmp_B 434 G 434 (479)
T ss_dssp -
T ss_pred C
Confidence 5
No 117
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.40 E-value=2.1e-06 Score=101.91 Aligned_cols=60 Identities=20% Similarity=0.354 Sum_probs=49.7
Q ss_pred ceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceec-CHHHHHHHhcccCCCCCCCcc
Q psy14582 1025 TVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVEL-GALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1025 ~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~-s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
..-+|..+++.|++|.+++||||++++.|+|+|+.. .-+.+ .+.+....+-|+||.| +.|
T Consensus 251 ~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~--------------~Vi~~~~~~s~~~~~Q~~GR~g--R~g 311 (337)
T 2z0m_A 251 PQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVE--------------KVINFDAPQDLRTYIHRIGRTG--RMG 311 (337)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBS--------------EEEESSCCSSHHHHHHHHTTBC--GGG
T ss_pred CHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCC--------------EEEEecCCCCHHHhhHhcCccc--cCC
Confidence 334789999999999999999999999999999661 23344 5678899999999998 665
No 118
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.36 E-value=9.1e-07 Score=107.64 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=0.0
Q ss_pred eeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceec-CHHHHHHHhcccCCCCCCCcc
Q psy14582 1026 VVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVEL-GALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1026 ~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~-s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
.-+|..+++.|++|.+++||||+++++|+|+|+.. ..+.+ .+.+....+.|+||.| +.|
T Consensus 295 ~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~--------------~Vi~~~~p~s~~~~~Qr~GR~~--R~g 354 (394)
T 1fuu_A 295 QQERDTIMKEFRSGSSRILISTDLLARGIDVQQVS--------------LVINYDLPANKENYIHRIGRGG--RFG 354 (394)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCC--------------EEEEeCCCCCHHHHHHHcCccc--CCC
Confidence 34788999999999999999999999999999762 12333 3467778999999988 655
No 119
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.35 E-value=7.5e-07 Score=111.23 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=39.8
Q ss_pred eeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhcc
Q psy14582 756 VSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 812 (1689)
Q Consensus 756 v~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~li 812 (1689)
+++.+|||+|||.+++++++..... .+.+++|++|+|+|+.|+.+.+
T Consensus 22 ~lv~a~TGsGKT~~~~~~~l~~~~~----------~~~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 22 TIMDLHPGAGKTKRILPSIVREALL----------RRLRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp EEECCCTTSSCCTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHT
T ss_pred EEEECCCCCCHhhHHHHHHHHHHHh----------cCCcEEEECCCHHHHHHHHHHh
Confidence 4778999999999999999877644 2578999999999999986654
No 120
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.33 E-value=7.8e-06 Score=98.14 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=49.4
Q ss_pred ceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceec-CHHHHHHHhcccCCCCCCCcc
Q psy14582 1025 TVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVEL-GALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1025 ~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~-s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
..-+|..+++.|++|.+++||||++++.|+|+|... .-+.+ .+.+..+..-|+||.| +.|
T Consensus 273 ~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~--------------~Vi~~~~~~s~~~~~Q~~GR~~--R~g 333 (367)
T 1hv8_A 273 SQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN--------------CVINYHLPQNPESYMHRIGRTG--RAG 333 (367)
T ss_dssp CHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS--------------EEEESSCCSCHHHHHHHSTTTC--CSS
T ss_pred CHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC--------------EEEEecCCCCHHHhhhcccccc--cCC
Confidence 334789999999999999999999999999999761 22344 4677899999999998 655
No 121
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.26 E-value=4.9e-06 Score=105.43 Aligned_cols=60 Identities=25% Similarity=0.392 Sum_probs=41.7
Q ss_pred eehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecC-----HHHHHHHhcccCCCCCCCcc
Q psy14582 1027 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELG-----ALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1027 V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s-----~~d~lQm~GRAGR~g~d~~G 1100 (1689)
-+|..+++.|++|.+++||||+++++|+|+|...+||. .+.+ ..+....+.|+||.| +.|
T Consensus 394 ~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~------------~~~p~~~~~~~s~~~~~Qr~GRag--R~g 458 (508)
T 3fho_A 394 AQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN------------YDMPLDQAGRPDPQTYLHRIGRTG--RFG 458 (508)
T ss_dssp CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----------------CC-----CTHHHHHTTSCCC-----
T ss_pred HHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEE------------ECCCCcccCCCCHHHHHHHhhhcC--CCC
Confidence 37899999999999999999999999999998887774 1111 156889999999998 655
No 122
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.16 E-value=2e-06 Score=113.44 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=62.2
Q ss_pred CceeEeccC--------CCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEccccc
Q psy14582 980 YGFAIHHAG--------MTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLA 1051 (1689)
Q Consensus 980 ~Gi~~hHag--------l~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa 1051 (1689)
..+.++||+ |++.+|..+++.|++|.++|||||+++++|||+|+|++| |
T Consensus 431 ~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~V-----------------I------ 487 (699)
T 4gl2_A 431 VKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIV-----------------I------ 487 (699)
T ss_dssp --CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCC-----------------E------
T ss_pred cceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEE-----------------E------
Confidence 446788999 999999999999999999999999999999999999998 3
Q ss_pred ccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCC
Q psy14582 1052 WGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHS 1109 (1689)
Q Consensus 1052 ~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~ 1109 (1689)
.||+. .++.+|+||+|||||.| +.+++++...
T Consensus 488 ----------------~~d~p------~s~~~~~Qr~GRArr~g----~~~~l~~~~~ 519 (699)
T 4gl2_A 488 ----------------RYGLV------TNEIAMVQARGRARADE----STYVLVAHSG 519 (699)
T ss_dssp ----------------EESCC------CCHHHHHHHHTTSCSSS----CEEEEEEESS
T ss_pred ----------------EeCCC------CCHHHHHHHcCCCCCCC----ceEEEEEeCC
Confidence 34442 35899999999988765 4555555443
No 123
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.12 E-value=8e-06 Score=107.70 Aligned_cols=62 Identities=23% Similarity=0.264 Sum_probs=47.9
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHH--HHHHHhcccCCCCCCCcc
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGAL--DVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~--d~lQm~GRAGR~g~d~~G 1100 (1689)
+..--+|..+++.|++|.+++||||+++++|+|+|..+ ..+-+.+. ...|..-|+||.| +.|
T Consensus 622 ~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~--------------~VIi~d~~r~~l~~l~Qr~GRaG--R~g 685 (780)
T 1gm5_A 622 RLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRAN--------------VMVIENPERFGLAQLHQLRGRVG--RGG 685 (780)
T ss_dssp SSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCC--------------EEEBCSCSSSCTTHHHHHHHTSC--CSS
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCC--------------EEEEeCCCCCCHHHHHHHhcccC--cCC
Confidence 33344899999999999999999999999999999761 22333333 4677778999998 554
No 124
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.10 E-value=3.7e-05 Score=95.53 Aligned_cols=59 Identities=24% Similarity=0.305 Sum_probs=47.5
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecC-HHHHHHHhcccCCCC
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELG-ALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s-~~d~lQm~GRAGR~g 1095 (1689)
+...-+|..+++.|++|.+++||||.+++.|+|+|+- ..-+-++ +.+.....-|+||.|
T Consensus 402 ~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~--------------~~Vi~~d~~~~~~~~~Qr~GR~~ 461 (494)
T 1wp9_A 402 GLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEV--------------DLVVFYEPVPSAIRSIQRRGRTG 461 (494)
T ss_dssp ---CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTC--------------CEEEESSCCHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhC--------------CEEEEeCCCCCHHHHHHHHhhcc
Confidence 3444578999999999999999999999999999975 1233454 688889999999986
No 125
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=97.97 E-value=2.3e-05 Score=101.91 Aligned_cols=40 Identities=18% Similarity=0.073 Sum_probs=33.0
Q ss_pred eEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHH
Q psy14582 757 SFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 807 (1689)
Q Consensus 757 ~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q 807 (1689)
+..++||+|||+++.+|++..... +..+++++|+++||.|
T Consensus 100 Iaea~TGeGKTlaf~LP~~l~aL~-----------g~~vlVltptreLA~q 139 (844)
T 1tf5_A 100 IAEMKTGEGKTLTSTLPVYLNALT-----------GKGVHVVTVNEYLASR 139 (844)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTT-----------SSCEEEEESSHHHHHH
T ss_pred EEEccCCcHHHHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHH
Confidence 567999999999999999843321 4579999999999998
No 126
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.95 E-value=1.5e-05 Score=109.16 Aligned_cols=47 Identities=23% Similarity=0.271 Sum_probs=39.2
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhh
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 810 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~ 810 (1689)
...+++.+|||+|||..++++++..+. .+.++||++|+++|+.|+.+
T Consensus 93 g~dvlv~ApTGSGKTl~~l~~il~~~~-----------~~~~~Lil~PtreLa~Q~~~ 139 (1104)
T 4ddu_A 93 GKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVTLVKQTLE 139 (1104)
T ss_dssp TCCEEECCSTTCCHHHHHHHHHHHHHT-----------TTCCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHh-----------cCCeEEEEechHHHHHHHHH
Confidence 457889999999999988888777652 36789999999999999643
No 127
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.93 E-value=1.4e-05 Score=109.54 Aligned_cols=57 Identities=18% Similarity=0.043 Sum_probs=42.9
Q ss_pred ecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhh
Q psy14582 743 VSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 810 (1689)
Q Consensus 743 ~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~ 810 (1689)
|...|-..-....+++.+|||+|||. +.++++..+.. .+.++||++|+++|+.|+.+
T Consensus 61 Q~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~----------~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 61 QKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL----------KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT----------TSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh----------cCCeEEEEeccHHHHHHHHH
Confidence 33334333345678999999999998 88888776643 35789999999999999643
No 128
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.92 E-value=2.5e-06 Score=106.16 Aligned_cols=70 Identities=13% Similarity=0.057 Sum_probs=47.6
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceee----ecCCCCcceec-CHHHHHHHhcccCCCCCCCc
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQI----YNPEKGRWVEL-GALDVLQMLGRAGRPQYDTK 1099 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~----yd~~~~~~~~~-s~~d~lQm~GRAGR~g~d~~ 1099 (1689)
+|..+++.|++|.+++||||+++++|+|+|+..||..|+.+ +++..+....+ .+.+..+.+.|+||.| +.
T Consensus 211 ~R~~~~~~F~~g~~~vLVaT~v~e~GiDipv~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~G--R~ 285 (440)
T 1yks_A 211 TFEREYPTIKQKKPDFILATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIG--RN 285 (440)
T ss_dssp SCC--------CCCSEEEESSSTTCCTTCCCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSS--CC
T ss_pred hHHHHHhhhcCCCceEEEECChhheeeccCceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccC--CC
Confidence 68899999999999999999999999999988888777643 23322222333 3678889999999998 54
No 129
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=97.91 E-value=3e-05 Score=98.21 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=65.3
Q ss_pred ceeEeccCCCHHHHHHHHHHHhcCCeEEEEEc-chhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCc
Q psy14582 981 GFAIHHAGMTRVDRTLVEDLFADRHIQVLVST-ATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAH 1059 (1689)
Q Consensus 981 Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT-~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~ 1059 (1689)
.+.++||+|+..+|..+++.|++|.++||||| +++++|+|+|++++| |
T Consensus 373 ~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~v-----------------i-------------- 421 (510)
T 2oca_A 373 KVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHV-----------------V-------------- 421 (510)
T ss_dssp SEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEE-----------------E--------------
T ss_pred CeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEE-----------------E--------------
Confidence 78999999999999999999999999999999 999999999998888 3
Q ss_pred eEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc-EEEEEe
Q psy14582 1060 TVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG-EGVLIT 1106 (1689)
Q Consensus 1060 ~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G-~~iil~ 1106 (1689)
.|++. .++.+|.||+|||||.| ..| .++++.
T Consensus 422 --------~~~~~------~s~~~~~Q~~GR~gR~g--~~~~~v~i~~ 453 (510)
T 2oca_A 422 --------LAHGV------KSKIIVLQTIGRVLRKH--GSKTIATVWD 453 (510)
T ss_dssp --------ESSCC------CSCCHHHHHHHHHHTTT--CCCCCCEEEE
T ss_pred --------EeCCC------CCHHHHHHHHhcccccC--CCCceEEEEE
Confidence 23332 34679999999999998 344 344443
No 130
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=97.78 E-value=2.8e-05 Score=100.81 Aligned_cols=40 Identities=23% Similarity=0.077 Sum_probs=33.1
Q ss_pred eEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHH
Q psy14582 757 SFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 807 (1689)
Q Consensus 757 ~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q 807 (1689)
+..++||+|||+++.+|++..... +.++++++|||+||.|
T Consensus 91 Iaem~TGsGKTlaf~LP~l~~~l~-----------g~~vlVltPTreLA~Q 130 (853)
T 2fsf_A 91 IAEMRTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQR 130 (853)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTT-----------SSCCEEEESSHHHHHH
T ss_pred eeeecCCchHHHHHHHHHHHHHHc-----------CCcEEEEcCCHHHHHH
Confidence 566899999999999999864322 4578999999999988
No 131
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.74 E-value=2.5e-05 Score=103.24 Aligned_cols=97 Identities=10% Similarity=0.016 Sum_probs=87.6
Q ss_pred hhHHHHhhhhhhhccCCCchhHHHHHHHHHHhhhhccCCCcccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhh
Q psy14582 1466 EAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLL 1545 (1689)
Q Consensus 1466 ~~~rll~a~vdi~s~~gwL~~~l~~m~l~QmivQa~w~~~s~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll 1545 (1689)
+|.+|++|+.+|+...||...+..+++|+++|.||+|...+||+||||++...++++.+++++++.+|+ .+++++.+++
T Consensus 617 ~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~l 695 (715)
T 2va8_A 617 TMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVKNLL 695 (715)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCChhhcchhhCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHHHHh
Confidence 389999999999999999999999999999999999999999999999999999999999999999999 9999999998
Q ss_pred cCCHHHHHHHHH-HHhcCCcE
Q psy14582 1546 QLSESQLADVAR-FCNRYPNI 1565 (1689)
Q Consensus 1546 ~l~~~q~~~v~~-~~~~~P~i 1565 (1689)
+ +.+-+.|.+ +...+|.+
T Consensus 696 ~--~~~~~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 696 G--QKLGEKVVQEAARLLNRF 714 (715)
T ss_dssp C--HHHHHHHHHHHHHHHC--
T ss_pred C--hhHHHHHHHHHHHhhccC
Confidence 6 777777777 55556654
No 132
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=97.73 E-value=0.00044 Score=95.41 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=47.2
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceec--CHHHHHHHhcccCCCCCCCccE
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVEL--GALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~--s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
+|..+++.|++|.+++||||..++.|+|+|..+ ..+-. +..+.-|..-|+||.| +.|.
T Consensus 852 eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~--------------~VIi~~~~~~~l~~l~Qr~GRvg--R~g~ 911 (1151)
T 2eyq_A 852 ELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN--------------TIIIERADHFGLAQLHQLRGRVG--RSHH 911 (1151)
T ss_dssp HHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEE--------------EEEETTTTSSCHHHHHHHHTTCC--BTTB
T ss_pred HHHHHHHHHHcCCCcEEEECCcceeeecccCCc--------------EEEEeCCCCCCHHHHHHHHhccC--cCCC
Confidence 789999999999999999999999999999652 11212 2357889999999998 6664
No 133
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.69 E-value=0.00027 Score=90.02 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=41.1
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
..+++.+|||+|||+++++++++.+.... ...+.++||++|+++|+.|..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~ 72 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMP------AGRKAKVVFLATKVPVYEQQK 72 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCC------SSCCCCEEEECSSHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCc------ccCCCeEEEEeCCHHHHHHHH
Confidence 46889999999999999999988876532 122678999999999999963
No 134
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=97.60 E-value=0.00037 Score=93.13 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=41.0
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
..+++.+|||+|||++++++++..+.... ...+.++||++|+++|+.|..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~------~~~~~~~Lvl~Pt~~L~~Q~~ 313 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMP------AGRKAKVVFLATKVPVYEQQK 313 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCC------SSCCCCEEEECSSHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcc------ccCCCeEEEEeCCHHHHHHHH
Confidence 46889999999999999999998876531 122678999999999999963
No 135
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=97.58 E-value=0.00019 Score=89.92 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=53.0
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceec-CHHHHHHHhcccCCCCCCCcc-E
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVEL-GALDVLQMLGRAGRPQYDTKG-E 1101 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~-s~~d~lQm~GRAGR~g~d~~G-~ 1101 (1689)
...-+|..+++.|++|.+++||||..++.|+|+|+.. .-+.+ .+.+..+...|+||.|-...| .
T Consensus 378 ~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~--------------~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~ 443 (472)
T 2fwr_A 378 TSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDAN--------------VGVIMSGSGSAREYIQRLGRILRPSKGKK 443 (472)
T ss_dssp SCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBS--------------EEEEECCSSCCHHHHHHHHHSBCCCTTTC
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCc--------------EEEEECCCCCHHHHHHHHhhccCCCCCCc
Confidence 3444789999999999999999999999999999771 22233 566788999999999944444 4
Q ss_pred EEEEe
Q psy14582 1102 GVLIT 1106 (1689)
Q Consensus 1102 ~iil~ 1106 (1689)
.+++.
T Consensus 444 ~~~i~ 448 (472)
T 2fwr_A 444 EAVLY 448 (472)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 45544
No 136
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.54 E-value=0.00069 Score=86.03 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=41.2
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
..+++.+|||+|||+++++++++.+.... ...+.++||++|+++|+.|..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~ 69 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFP------CGQKGKVVFFANQIPVYEQQA 69 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCC------SSCCCCEEEECSSHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcc------cCCCCEEEEEeCCHHHHHHHH
Confidence 46889999999999999999998876532 123678999999999999953
No 137
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.40 E-value=0.00086 Score=88.83 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=35.2
Q ss_pred eehhhHHHHhh-----cccceEEEEcccccccCCCCCceEEEe
Q psy14582 1027 VDRTLVEDLFA-----DRHIQVLVSTATLAWGVNLPAHTVIIK 1064 (1689)
Q Consensus 1027 V~R~~~~~~f~-----~g~i~vLVaT~TLa~GvNLPa~~VII~ 1064 (1689)
-+|..+++.|+ +|..++||||+++++|+|+|...+||.
T Consensus 351 ~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId 393 (773)
T 2xau_A 351 HQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVD 393 (773)
T ss_dssp HHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEE
T ss_pred HHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEe
Confidence 38899999999 999999999999999999999888875
No 138
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=97.37 E-value=0.0013 Score=86.37 Aligned_cols=52 Identities=21% Similarity=0.228 Sum_probs=41.4
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhh
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 810 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~ 810 (1689)
...+++.+|||+|||+++++++++.+..... ..+.++||++|+++|+.|..+
T Consensus 28 g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~lvl~Pt~~L~~Q~~~ 79 (696)
T 2ykg_A 28 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQ------GQKGKVVFFANQIPVYEQNKS 79 (696)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHHHHSCT------TCCCCEEEECSSHHHHHHHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHhCcc------CCCCeEEEEECCHHHHHHHHH
Confidence 3568899999999999999999987754311 123689999999999999643
No 139
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.35 E-value=0.0002 Score=92.52 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHhcCCcEEEEccCCCChH--HHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhc
Q psy14582 483 NRIQSRLCKSALESDENLLLCAPTGAGKT--NVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGN 555 (1689)
Q Consensus 483 tpiQ~~aip~al~~g~nvLv~APTGSGKT--~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~ 555 (1689)
+++|..+++.++ +++.+++++|+||||| ++++++.+..+.. ..+.++++++||..+|.++.+.
T Consensus 151 ~~~Q~~Ai~~~l-~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---------~~~~~vll~APTg~AA~~L~e~ 215 (608)
T 1w36_D 151 INWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARLTES 215 (608)
T ss_dssp CCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---------SCCCCEEEEBSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---------cCCCeEEEEeCChhHHHHHHHH
Confidence 789999999999 7899999999999999 7788888775521 1345899999999999987543
No 140
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=97.14 E-value=0.0017 Score=88.11 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=40.1
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
..+++.+|||+|||+++++++++.+.+.. ...+.++||++|+++|+.|..
T Consensus 264 ~~~ll~a~TGsGKTl~~~~~i~~~l~~~~------~~~~~~vLvl~Pt~~L~~Q~~ 313 (936)
T 4a2w_A 264 KNALICAPTGSGKTFVSILICEHHFQNMP------AGRKAKVVFLATKVPVYEQQK 313 (936)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHTTTTTCC------SSCCCCEEEECSSHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHhcc------ccCCCeEEEEeCCHHHHHHHH
Confidence 36888999999999999999988765421 122578999999999999953
No 141
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.91 E-value=0.00045 Score=81.27 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=40.6
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
..+++.+|||+|||++|++|+++.+... ..++++||++|+|+|+.|+
T Consensus 132 ~~~l~~a~TGsGKT~a~~lp~l~~l~~~--------~~~~~~lil~PtreLa~Q~ 178 (300)
T 3fmo_B 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPA--------NKYPQCLCLSPTYELALQT 178 (300)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHCCTT--------SCSCCEEEECSSHHHHHHH
T ss_pred CeEEEECCCCCCccHHHHHHHHHhhhcc--------CCCceEEEEcCcHHHHHHH
Confidence 6789999999999999999999987542 2356899999999999995
No 142
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.75 E-value=0.00071 Score=76.72 Aligned_cols=49 Identities=20% Similarity=0.359 Sum_probs=41.0
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
...+++.+|||+|||++++++++..+... ...+.++||++|+++|+.|.
T Consensus 66 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-------~~~~~~~lil~Pt~~L~~q~ 114 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAFSIPILMQLKQP-------ANKGFRALIISPTRELASQI 114 (245)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHCSC-------CSSSCCEEEECSSHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHhhc-------ccCCceEEEEeCCHHHHHHH
Confidence 45689999999999999999999887532 12467899999999999995
No 143
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.74 E-value=0.00079 Score=76.35 Aligned_cols=62 Identities=26% Similarity=0.232 Sum_probs=45.7
Q ss_pred cccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 744 SDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 744 sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
...|-.......+++.+|||+|||+++++|++..+..... .....+.++||++|+++|+.|+
T Consensus 57 ~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~---~~~~~~~~~lil~Pt~~L~~Q~ 118 (242)
T 3fe2_A 57 AQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF---LERGDGPICLVLAPTRELAQQV 118 (242)
T ss_dssp HHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC---CCTTCCCSEEEECSSHHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc---cccCCCCEEEEEeCcHHHHHHH
Confidence 3333333345678999999999999999999988764321 1123467899999999999995
No 144
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.66 E-value=0.00083 Score=75.30 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=40.4
Q ss_pred cccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 752 TILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 752 ~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
....+++.+|||+|||+++++|++..+...... .....+.++||++|+++|+.|.
T Consensus 56 ~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~--~~~~~~~~~lil~Pt~~L~~q~ 110 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS--REQRNGPGMLVLTPTRELALHV 110 (228)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHC-----------CCCSEEEECSSHHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHHHHHHHHHHhccch--hhccCCCcEEEEeCCHHHHHHH
Confidence 445789999999999999999999877532111 1123467899999999999984
No 145
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.64 E-value=0.00078 Score=77.54 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=42.0
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
...+++.+|||+|||.++++|+++.+.+... ....+.++||++|+|+|+.|.
T Consensus 91 ~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~----~~~~~~~~lil~Pt~~La~q~ 142 (262)
T 3ly5_A 91 GRDLLAAAKTGSGKTLAFLIPAVELIVKLRF----MPRNGTGVLILSPTRELAMQT 142 (262)
T ss_dssp TCCCEECCCTTSCHHHHHHHHHHHHHHHTTC----CGGGCCCEEEECSSHHHHHHH
T ss_pred CCcEEEEccCCCCchHHHHHHHHHHHHhccc----cccCCceEEEEeCCHHHHHHH
Confidence 4568899999999999999999988765311 112367899999999999995
No 146
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.54 E-value=0.019 Score=73.83 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=44.8
Q ss_pred ehhhHHHHhhcccce---EEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCC
Q psy14582 1028 DRTLVEDLFADRHIQ---VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~---vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g 1095 (1689)
+|..+++.|+++..+ +||||..++.|+|+|+-. .-...-.+.+..+..-|.||.+
T Consensus 484 ~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~-------------~Vi~~~~~~s~~~~~Q~iGR~~ 541 (590)
T 3h1t_A 484 IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCK-------------NVVLARVVNSMSEFKQIVGRGT 541 (590)
T ss_dssp HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEE-------------EEEEESCCCCHHHHHHHHTTSC
T ss_pred HHHHHHHHHhCCCCCCCEEEEECChhhcCccchhee-------------EEEEEecCCChHHHHHHHhhhc
Confidence 489999999998876 888999999999999761 1223456778888899999988
No 147
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.49 E-value=0.0013 Score=73.87 Aligned_cols=48 Identities=23% Similarity=0.265 Sum_probs=40.5
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
...+++.+|||+|||++++++++..+... ..+.++||++|+++|+.|.
T Consensus 61 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--------~~~~~~lil~Pt~~L~~q~ 108 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVFSTIALDSLVLE--------NLSTQILILAPTREIAVQI 108 (230)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHCCTT--------SCSCCEEEECSSHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhc--------CCCceEEEEeCCHHHHHHH
Confidence 45689999999999999999999877432 2357899999999999995
No 148
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.45 E-value=0.0018 Score=72.00 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=40.0
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
..+++.+|||+|||.++++++++.+... ..+.++||++|+++|+.|.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~--------~~~~~~lil~Pt~~L~~q~ 88 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLLPIMEKIKPE--------RAEVQAVITAPTRELATQI 88 (219)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHHCCTT--------SCSCCEEEECSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHHHHhC--------cCCceEEEEcCcHHHHHHH
Confidence 5688999999999999999999887532 2357899999999999995
No 149
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.42 E-value=0.0024 Score=70.03 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=40.6
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
...+++.+|||+|||.+++++++..+... ..+.++||++|+++|+.|..
T Consensus 40 ~~~~lv~apTGsGKT~~~~~~~~~~~~~~--------~~~~~~lil~Pt~~L~~q~~ 88 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYLIPLLERLDLK--------KDNIQAMVIVPTRELALQVS 88 (206)
T ss_dssp TCCEEEECCSSSTTHHHHHHHHHHHCCTT--------SCSCCEEEECSCHHHHHHHH
T ss_pred CCCEEEECCCCCchHHHHHHHHHHHhccc--------CCCeeEEEEeCcHHHHHHHH
Confidence 35688999999999999999999876431 24578999999999999953
No 150
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.37 E-value=0.0029 Score=72.15 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=41.0
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
...+++.+|||+|||.++++++++.+... ..+.++||++|+++|+.|..
T Consensus 80 ~~~~lv~a~TGsGKT~~~~~~il~~l~~~--------~~~~~~lil~Ptr~L~~q~~ 128 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAFALPILNALLET--------PQRLFALVLTPTRELAFQIS 128 (249)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHS--------CCSSCEEEECSSHHHHHHHH
T ss_pred CCCEEEEcCCCCCchhHhHHHHHHHHhcC--------CCCceEEEEeCCHHHHHHHH
Confidence 35688999999999999999999887552 23568999999999999953
No 151
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=96.35 E-value=0.0018 Score=73.75 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=41.6
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCC-cCCCCcEEEEEccchhHHHHH
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGT-INADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~-i~~~~~kvVylaP~r~L~~q~ 808 (1689)
...+++.+|||+|||++++++++..+......... ....+.++||++|+++|+.|.
T Consensus 60 ~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 116 (253)
T 1wrb_A 60 HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQI 116 (253)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHH
Confidence 45688999999999999999999887543211110 122357899999999999995
No 152
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=96.33 E-value=0.0017 Score=68.94 Aligned_cols=63 Identities=24% Similarity=0.275 Sum_probs=52.4
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
...-+|..+++.|++|.+++||||+.+++|+|+|...+||. --.+.+....+.|+||.| +.|.
T Consensus 69 ~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~-------------~~~p~~~~~~~qr~GR~~--R~g~ 131 (163)
T 2hjv_A 69 MIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN-------------YDLPLEKESYVHRTGRTG--RAGN 131 (163)
T ss_dssp SCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE-------------SSCCSSHHHHHHHTTTSS--CTTC
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE-------------eCCCCCHHHHHHhccccC--cCCC
Confidence 34447899999999999999999999999999997666653 145678999999999998 7663
No 153
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.31 E-value=0.0014 Score=73.97 Aligned_cols=49 Identities=27% Similarity=0.351 Sum_probs=40.8
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
...+++.+|||+|||.++++++++.+... ..+.++||++|+++|+.|..
T Consensus 67 ~~~~li~apTGsGKT~~~~l~~l~~l~~~--------~~~~~~lil~Pt~~L~~q~~ 115 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATFAISILQQLEIE--------FKETQALVLAPTRELAQQIQ 115 (237)
T ss_dssp TCCEEECCCSSHHHHHHHHHHHHHHCCTT--------SCSCCEEEECSSHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhc--------CCCceEEEEECcHHHHHHHH
Confidence 45688999999999999999999886431 23578999999999999963
No 154
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.28 E-value=0.0032 Score=70.09 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=40.0
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
..+++.+|||+|||.++++++++.+... ..+.++||++|+++|+.|.
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~l~~~--------~~~~~~lil~Pt~~L~~q~ 98 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQRIDTS--------VKAPQALMLAPTRELALQI 98 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHCCTT--------CCSCCEEEECSSHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHHhcc--------CCCceEEEEECCHHHHHHH
Confidence 5688999999999999999999887432 2357899999999999985
No 155
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.27 E-value=0.002 Score=72.46 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=42.0
Q ss_pred cccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 752 TILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 752 ~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
....+++.+|||+|||+++++++++.+..... ....+.++||++|+++|+.|..
T Consensus 61 ~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~----~~~~~~~~lil~Pt~~L~~q~~ 114 (236)
T 2pl3_A 61 QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW----TSTDGLGVLIISPTRELAYQTF 114 (236)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC----CGGGCCCEEEECSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc----cccCCceEEEEeCCHHHHHHHH
Confidence 34568899999999999999999988754211 1123678999999999999953
No 156
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=96.26 E-value=0.0016 Score=69.29 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=50.1
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
...-+|..+++.|++|.+++||||+++++|+|+|...+||. --.+.+..+.+.|+||.| +.|
T Consensus 64 ~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~-------------~~~p~~~~~~~qr~GR~g--R~g 125 (165)
T 1fuk_A 64 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN-------------YDLPANKENYIHRIGRGG--RFG 125 (165)
T ss_dssp SCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE-------------SSCCSSGGGGGGSSCSCC-----
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEE-------------eCCCCCHHHHHHHhcccc--cCC
Confidence 33447899999999999999999999999999998777764 135667889999999998 655
No 157
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.18 E-value=0.0024 Score=70.98 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=39.9
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
...+++.+|||+|||.+++++++..+... ..+.++||++|+++|+.|.
T Consensus 51 ~~~~li~~~TGsGKT~~~~~~~~~~~~~~--------~~~~~~lil~Pt~~L~~q~ 98 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVLATLQQLEPV--------TGQVSVLVMCHTRELAFQI 98 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHCCCC--------TTCCCEEEECSCHHHHHHH
T ss_pred CCCEEEECCCCCchhhhhhHHHHHhhhcc--------CCCEEEEEEeCCHHHHHHH
Confidence 35689999999999999999999876431 2346899999999999995
No 158
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=96.16 E-value=0.0021 Score=71.43 Aligned_cols=65 Identities=23% Similarity=0.316 Sum_probs=53.2
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
+...-+|..+++.|++|.+++||||..+++|+|+|...+||. --.+.+....+.|+||.| +.|..
T Consensus 64 ~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~-------------~~~p~~~~~~~qr~GR~g--R~g~~ 128 (212)
T 3eaq_A 64 DLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVH-------------YRLPDRAEAYQHRSGRTG--RAGRG 128 (212)
T ss_dssp SSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE-------------SSCCSSHHHHHHHHTTBC--CCC--
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEE-------------CCCCcCHHHHHHHhcccC--CCCCC
Confidence 344447999999999999999999999999999998777763 134578999999999998 77643
No 159
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=96.06 E-value=0.0021 Score=69.98 Aligned_cols=62 Identities=24% Similarity=0.278 Sum_probs=43.9
Q ss_pred ceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1025 TVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1025 ~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
.--+|..+++.|++|.+++||||+.+++|+|+|...+||. --.+.+..+.+-|+||.| +.|.
T Consensus 81 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~-------------~d~p~s~~~~~Qr~GR~~--R~g~ 142 (185)
T 2jgn_A 81 SQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN-------------FDLPSDIEEYVHRIGRTG--RVGN 142 (185)
T ss_dssp -----CHHHHHHHHTSSSEEEEEC------CCCSBSEEEE-------------SSCCSSHHHHHHHHTTBC--CTTS
T ss_pred CHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE-------------eCCCCCHHHHHHHccccC--CCCC
Confidence 3347899999999999999999999999999998877764 145678999999999998 7663
No 160
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.01 E-value=0.0051 Score=67.41 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=40.5
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
..+++.+|||+|||.+++++++..+.... ....+.+++|++|+++|+.|.
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~l~~~~-----~~~~~~~~lil~P~~~L~~q~ 88 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAERLAPSQ-----ERGRKPRALVLTPTRELALQV 88 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCCCC-----CTTCCCSEEEECSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHHHhhcc-----ccCCCCcEEEEECCHHHHHHH
Confidence 46889999999999999999998875321 112467899999999999985
No 161
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=95.95 E-value=0.0013 Score=70.72 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=52.3
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
...-+|..+++.|++|.+++||||+.+++|+|+|...+||. --.+.+..+.+.|+||.| +.|
T Consensus 65 ~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~-------------~d~p~~~~~~~qr~GR~~--R~g 126 (172)
T 1t5i_A 65 MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN-------------YDMPEDSDTYLHRVARAG--RFG 126 (172)
T ss_dssp SCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE-------------SSCCSSHHHHHHHHHHHT--GGG
T ss_pred CCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE-------------ECCCCCHHHHHHHhcccc--cCC
Confidence 34457899999999999999999999999999998777764 145677889999999988 655
No 162
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.91 E-value=0.0025 Score=69.74 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=51.5
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
+...-+|..+++.|++|.+++||||..+++|+|+|...+||. --.+.+....+-|+||.| +.|.
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~-------------~d~p~~~~~~~qr~GR~g--R~g~ 150 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN-------------YDMPEEIENYVHRIGRTG--CSGN 150 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE-------------SSCCSSHHHHHHHHTTSC--C---
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE-------------eCCCCCHHHHHHHhCccc--cCCC
Confidence 334447999999999999999999999999999998776663 145678999999999998 6653
No 163
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=94.66 E-value=0.0018 Score=69.21 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=51.3
Q ss_pred ceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccE
Q psy14582 1025 TVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGE 1101 (1689)
Q Consensus 1025 ~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~ 1101 (1689)
..-+|..+++.|++|.+++||||+++++|+|+|...+||. --.+.+....+.|+||.| +.|.
T Consensus 65 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~-------------~~~p~~~~~~~qr~GR~~--R~g~ 126 (170)
T 2yjt_D 65 VQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFN-------------FDMPRSGDTYLHRIGRTA--RAGR 126 (170)
Confidence 3447889999999999999999999999999998776653 134667889999999988 6553
No 164
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.61 E-value=0.0059 Score=76.10 Aligned_cols=69 Identities=13% Similarity=0.006 Sum_probs=47.6
Q ss_pred ehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCccee-------c-CHHHHHHHhcccCCCCCCCc
Q psy14582 1028 DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVE-------L-GALDVLQMLGRAGRPQYDTK 1099 (1689)
Q Consensus 1028 ~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~-------~-s~~d~lQm~GRAGR~g~d~~ 1099 (1689)
+|..+++.|++|.+++||||+++++|+|+|+..||..|+.+-..- . +.. + .+.+..+.+.|+||.| +.
T Consensus 224 ~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~~~VI~~G~~~~~~~-~-~~~~~~~~~~~d~p~s~~~~~QR~GRaG--R~ 299 (459)
T 2z83_A 224 SYDTEYPKCKNGDWDFVITTDISEMGANFGASRVIDCRKSVKPTI-L-EEGEGRVILGNPSPITSASAAQRRGRVG--RN 299 (459)
T ss_dssp CCCCCGGGSSSCCCSEEEESSCC---CCCSCSEEEECCEECCEEE-E-CSSSCEEEECSCEECCHHHHHHHHTTSS--CC
T ss_pred HHHHHHhhccCCCceEEEECChHHhCeecCCCEEEECCccccccc-c-cccccccccccCCCCCHHHHHHhccccC--CC
Confidence 678889999999999999999999999999977776665432110 0 000 0 3455678888888887 54
Q ss_pred c
Q psy14582 1100 G 1100 (1689)
Q Consensus 1100 G 1100 (1689)
|
T Consensus 300 g 300 (459)
T 2z83_A 300 P 300 (459)
T ss_dssp T
T ss_pred C
Confidence 4
No 165
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=95.23 E-value=0.0054 Score=71.93 Aligned_cols=65 Identities=25% Similarity=0.394 Sum_probs=51.4
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEE
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~ 1102 (1689)
+...-+|..+++.|++|.+++||||..+++|+|+|...+||. || .+.+....+.|+||.| +.|..
T Consensus 61 ~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~----~d---------~p~s~~~y~Qr~GRag--R~g~~ 125 (300)
T 3i32_A 61 DMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YR---------MPDRAEAYQHRSGRTG--RAGRG 125 (300)
T ss_dssp CCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEE----SS---------CCSSTTHHHHHHTCCC-------
T ss_pred CCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEE----cC---------CCCCHHHHHHHccCcC--cCCCC
Confidence 344447999999999999999999999999999998888773 22 5678889999999998 66643
No 166
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.84 E-value=0.034 Score=72.35 Aligned_cols=68 Identities=25% Similarity=0.380 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
..||+-|.+|+..++.+..-.||.+|-|||||.+..-.|.+.+. .+.++++++||..-|.++.+.+..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~-----------~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK-----------QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh-----------CCCeEEEEcCchHHHHHHHHHHHh
Confidence 46899999999999844445699999999999886655554443 234899999999999998876643
No 167
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.59 E-value=0.017 Score=79.34 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=84.1
Q ss_pred cccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccc--cCCceeecCCchhH
Q psy14582 750 AETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG--KDEIHLLHDERGPV 827 (1689)
Q Consensus 750 ~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liI--iDEiHll~d~rG~~ 827 (1689)
......+++.+|||+|||.++.++++..+.. +.+++|++|+|+|+.|..+-+. +..+.++.+...
T Consensus 196 i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-----------g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-- 262 (1108)
T 3l9o_A 196 IDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-- 262 (1108)
T ss_dssp HTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-----------TCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB--
T ss_pred HHcCCCEEEECCCCCChHHHHHHHHHHHHhc-----------CCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc--
Confidence 3445678999999999999999999988743 5799999999999999643321 123444432211
Q ss_pred HHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHH
Q psy14582 828 LEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDI 907 (1689)
Q Consensus 828 lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~ 907 (1689)
.....+|+.+|. +-+...+..... .++ ...++.+++-+...... ...
T Consensus 263 --------------~~~~~~IlV~Tp-----e~L~~~L~~~~~--------~l~----~l~lVVIDEaH~l~d~~--rg~ 309 (1108)
T 3l9o_A 263 --------------INPDAGCLVMTT-----EILRSMLYRGSE--------VMR----EVAWVIFDEVHYMRDKE--RGV 309 (1108)
T ss_dssp --------------CCCSCSEEEEEH-----HHHHHHHHHCSS--------HHH----HEEEEEEETGGGTTSHH--HHH
T ss_pred --------------cCCCCCEEEeCh-----HHHHHHHHcCcc--------ccc----cCCEEEEhhhhhccccc--hHH
Confidence 123455555432 333334332211 001 12344555554321100 112
Q ss_pred HHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHh
Q psy14582 908 VYEKVMEHAG-RNQLLVFVHSRKETGKTARAIRDM 941 (1689)
Q Consensus 908 ~~~~i~~~~~-~~~vLVFv~srk~~~~~a~~L~~~ 941 (1689)
.+..+....+ .-++|.|..|...+..++.++...
T Consensus 310 ~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~ 344 (1108)
T 3l9o_A 310 VWEETIILLPDKVRYVFLSATIPNAMEFAEWICKI 344 (1108)
T ss_dssp HHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 2333444443 468999998876667777777653
No 168
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.58 E-value=0.0099 Score=63.74 Aligned_cols=68 Identities=25% Similarity=0.327 Sum_probs=50.6
Q ss_pred cceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCcc
Q psy14582 1024 HTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
...-+|..+++.|++|.+++||||+++++|+|+|+..+||. ||. .|.+....+..+++.|+||.| +.|
T Consensus 68 ~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~----~d~---p~~~~~~~~~~~~~qr~GR~g--R~g 135 (175)
T 2rb4_A 68 LTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVN----FDL---PVKQGEEPDYETYLHRIGRTG--RFG 135 (175)
T ss_dssp CCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEE----SSC---CC--CCSCCHHHHHHHHCBC------
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEE----eCC---CCCccccCCHHHHHHHhcccc--cCC
Confidence 34447999999999999999999999999999998888774 442 111111188999999999988 554
No 169
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.41 E-value=0.05 Score=70.42 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=53.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
....+|+.|.+|+..++ .+..+++.+|.|+|||.+..--+ ..+... .+.++++++||...|.++...+.
T Consensus 177 ~~~~ln~~Q~~av~~~l-~~~~~li~GppGTGKT~~~~~~i-~~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 177 GLPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIV-YHLARQ---------GNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp TSCCCCHHHHHHHHHHH-TCSEEEEECCTTSCHHHHHHHHH-HHHHTS---------SSCCEEEEESSHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHh-cCCCeEEECCCCCCHHHHHHHHH-HHHHHc---------CCCeEEEEeCcHHHHHHHHHHHH
Confidence 34678999999999888 56778999999999998765433 344321 23489999999999999886654
Q ss_pred c
Q psy14582 558 K 558 (1689)
Q Consensus 558 k 558 (1689)
+
T Consensus 246 ~ 246 (624)
T 2gk6_A 246 Q 246 (624)
T ss_dssp T
T ss_pred h
Confidence 3
No 170
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.38 E-value=0.056 Score=67.28 Aligned_cols=69 Identities=19% Similarity=0.308 Sum_probs=51.2
Q ss_pred CCCCCCHHHHHHHHHHHhc----CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 478 DFKTLNRIQSRLCKSALES----DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~----g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
.|..||+-|.+++..++.. ..++++.||.|||||.+.. .++..+... + ..++++++||...|.++.
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~----~-----~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALIST----G-----ETGIILAAPTHAAKKILS 91 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHT----T-----CCCEEEEESSHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhc----C-----CceEEEecCcHHHHHHHH
Confidence 6889999999999876532 3499999999999997653 444445432 1 136999999999888776
Q ss_pred hcc
Q psy14582 554 GNF 556 (1689)
Q Consensus 554 ~~f 556 (1689)
..+
T Consensus 92 ~~~ 94 (459)
T 3upu_A 92 KLS 94 (459)
T ss_dssp HHH
T ss_pred hhh
Confidence 433
No 171
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.05 E-value=0.04 Score=71.10 Aligned_cols=47 Identities=28% Similarity=0.429 Sum_probs=40.4
Q ss_pred cccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 752 TILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 752 ~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
....+++.+|||+|||+++++|++..+... +.+++|++||++|+.|.
T Consensus 21 ~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----------~~kvli~t~T~~l~~Qi 67 (620)
T 4a15_A 21 KSYGVALESPTGSGKTIMALKSALQYSSER----------KLKVLYLVRTNSQEEQV 67 (620)
T ss_dssp HSSEEEEECCTTSCHHHHHHHHHHHHHHHH----------TCEEEEEESSHHHHHHH
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhhhhc----------CCeEEEECCCHHHHHHH
Confidence 345788999999999999999999887542 46999999999999985
No 172
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=94.02 E-value=0.037 Score=75.28 Aligned_cols=144 Identities=15% Similarity=0.192 Sum_probs=81.4
Q ss_pred ccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhhccc--cCCceeecCCchhHH
Q psy14582 751 ETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG--KDEIHLLHDERGPVL 828 (1689)
Q Consensus 751 e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~liI--iDEiHll~d~rG~~l 828 (1689)
.....+++.+|||+|||.++.++++..+.. +.+++|++|+++|+.|..+-+- +..+.++.++..
T Consensus 99 ~~g~~vLV~apTGSGKTlva~lai~~~l~~-----------g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~--- 164 (1010)
T 2xgj_A 99 DRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT--- 164 (1010)
T ss_dssp HHTCEEEEECCTTSCHHHHHHHHHHHHHHT-----------TCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCE---
T ss_pred HcCCCEEEECCCCCChHHHHHHHHHHHhcc-----------CCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCc---
Confidence 344568999999999999999998887643 5799999999999999643221 113333332110
Q ss_pred HHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCcccceEEEEEeechhhHHHHHHHhhHHH
Q psy14582 829 EALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIV 908 (1689)
Q Consensus 829 E~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~RpvpL~~~~~~~~~~~~~~~~~~m~~~~ 908 (1689)
......++.+|. +-+...+.... ..++. ..++.+++-+..... -....
T Consensus 165 -------------~~~~~~IvV~Tp-----e~L~~~L~~~~--------~~l~~----l~lVViDEaH~l~d~--~rg~~ 212 (1010)
T 2xgj_A 165 -------------INPDAGCLVMTT-----EILRSMLYRGS--------EVMRE----VAWVIFDEVHYMRDK--ERGVV 212 (1010)
T ss_dssp -------------ECTTCSEEEEEH-----HHHHHHHHHTC--------TTGGG----EEEEEEETGGGGGCT--TTHHH
T ss_pred -------------cCCCCCEEEEcH-----HHHHHHHHcCc--------chhhc----CCEEEEechhhhccc--chhHH
Confidence 112345555542 33333332211 01111 234455554433110 00122
Q ss_pred HHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHH
Q psy14582 909 YEKVMEHAG-RNQLLVFVHSRKETGKTARAIRD 940 (1689)
Q Consensus 909 ~~~i~~~~~-~~~vLVFv~srk~~~~~a~~L~~ 940 (1689)
++.++...+ ..+++.+..|-..+..++.++..
T Consensus 213 ~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~ 245 (1010)
T 2xgj_A 213 WEETIILLPDKVRYVFLSATIPNAMEFAEWICK 245 (1010)
T ss_dssp HHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHh
Confidence 333333443 46889999998777778877764
No 173
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=93.99 E-value=0.028 Score=61.61 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=38.7
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 807 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q 807 (1689)
..+++.+|||+|||++++++++..+..... ...+.++||++|+++|+.|
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-----~~~~~~~lil~p~~~L~~q 97 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDHLDKKKK-----ASEPGKVIVLVNKVLLVEQ 97 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHHHHHHH-----TTCCCCEEEEESSHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHhhccc-----ccCCCcEEEEECHHHHHHH
Confidence 468889999999999999998876644211 1135689999999999988
No 174
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.83 E-value=0.059 Score=71.52 Aligned_cols=70 Identities=24% Similarity=0.341 Sum_probs=53.7
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
.+..+|+.|.+|+..++ ++.-++|.||.|||||.+..--+ ..+... .+.++++++||..-|.++.+.+.
T Consensus 357 ~~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~~i~~~i-~~l~~~---------~~~~ILv~a~tn~A~d~l~~rL~ 425 (802)
T 2xzl_A 357 NFAQLNSSQSNAVSHVL-QRPLSLIQGPPGTGKTVTSATIV-YHLSKI---------HKDRILVCAPSNVAVDHLAAKLR 425 (802)
T ss_dssp TSCCCCHHHHHHHHHHT-TCSEEEEECSTTSSHHHHHHHHH-HHHHHH---------HCCCEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHHHH-HHHHhC---------CCCeEEEEcCcHHHHHHHHHHHH
Confidence 45679999999999888 56678999999999998765444 333321 12489999999999999887654
Q ss_pred c
Q psy14582 558 K 558 (1689)
Q Consensus 558 k 558 (1689)
+
T Consensus 426 ~ 426 (802)
T 2xzl_A 426 D 426 (802)
T ss_dssp H
T ss_pred h
Confidence 3
No 175
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=93.51 E-value=0.27 Score=66.93 Aligned_cols=138 Identities=28% Similarity=0.443 Sum_probs=115.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
+| +|+|+|.++++.++ +|+|+|++||||||||++|++|+...+. .+.++||++||++|+.|++..|.
T Consensus 37 ~f-~l~~~Q~~aI~~il-~g~~vlv~apTGsGKTlv~~~~i~~~~~-----------~g~~vlvl~PtraLa~Q~~~~l~ 103 (997)
T 4a4z_A 37 PF-ELDTFQKEAVYHLE-QGDSVFVAAHTSAGKTVVAEYAIAMAHR-----------NMTKTIYTSPIKALSNQKFRDFK 103 (997)
T ss_dssp SS-CCCHHHHHHHHHHH-TTCEEEEECCTTSCSHHHHHHHHHHHHH-----------TTCEEEEEESCGGGHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHH-cCCCEEEEECCCCcHHHHHHHHHHHHHh-----------cCCeEEEEeCCHHHHHHHHHHHH
Confidence 44 48999999999887 7999999999999999999999987654 34589999999999999977654
Q ss_pred c-------------------------------------------------cchhhccC-CCchHHHHHHHHHHHHHhhcc
Q psy14582 558 K-------------------------------------------------DEIHLLHD-ERGPVLEALIARTIRNIEATQ 587 (1689)
Q Consensus 558 k-------------------------------------------------de~hll~d-e~g~~le~~~~~~~~~~~~~~ 587 (1689)
+ ||+|.+.+ ++|..++.++.. .+
T Consensus 104 ~~~~~~~v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~-------l~ 176 (997)
T 4a4z_A 104 ETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM-------LP 176 (997)
T ss_dssp TTC--CCEEEECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH-------SC
T ss_pred HHcCCCeEEEEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHh-------cc
Confidence 3 67777766 577777766653 56
Q ss_pred cCceEEEEeecCCCHHHHHHHHhhCCCCCceeecCCCccccceeEEEE
Q psy14582 588 EDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIG 635 (1689)
Q Consensus 588 ~~~q~v~~SAT~~~~~~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~ 635 (1689)
+.+|++++|||+++..++.+|+.......++++....+++++...+..
T Consensus 177 ~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~ 224 (997)
T 4a4z_A 177 QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWA 224 (997)
T ss_dssp TTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEE
T ss_pred cCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEec
Confidence 789999999999999999999986655678899999999999877654
No 176
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=93.36 E-value=0.07 Score=69.23 Aligned_cols=69 Identities=25% Similarity=0.291 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
..+|+-|.+++. ..+..++|.|+-|||||.+..--+...+.... ....+++++++|+..|.++...+.+
T Consensus 8 ~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-------~~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 8 DSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-------CSPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp TTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-------CCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-------CChhhEEEEeccHHHHHHHHHHHHH
Confidence 578999999995 34688999999999999998777766665321 1234799999999999998876643
No 177
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.32 E-value=0.1 Score=69.13 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=53.7
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
....+++.|.+|+..++ ++..+++.+|.|+|||.+..- ++..+... .+.++++++||..-|.++.+.+.
T Consensus 353 ~~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~ti~~-~i~~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 353 GLPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSAT-IVYHLARQ---------GNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp TSCCCCHHHHHHHHHHH-TSSEEEEECCTTSCHHHHHHH-HHHHHHTT---------CSSCEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHhc-cCCeEEEEcCCCCCHHHHHHH-HHHHHHHc---------CCCcEEEEcCcHHHHHHHHHHHH
Confidence 34678999999999888 567789999999999987543 33444421 23489999999999999877654
Q ss_pred c
Q psy14582 558 K 558 (1689)
Q Consensus 558 k 558 (1689)
+
T Consensus 422 ~ 422 (800)
T 2wjy_A 422 Q 422 (800)
T ss_dssp T
T ss_pred H
Confidence 3
No 178
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=93.29 E-value=0.062 Score=68.49 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=37.5
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
...+++.+|||+|||+++++|++.. +.+++|++||++|+.|..
T Consensus 22 ~~~~~~~a~TGtGKT~~~l~p~l~~--------------~~~v~i~~pt~~l~~q~~ 64 (551)
T 3crv_A 22 NFLVALNAPTGSGKTLFSLLVSLEV--------------KPKVLFVVRTHNEFYPIY 64 (551)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH--------------CSEEEEEESSGGGHHHHH
T ss_pred CCcEEEECCCCccHHHHHHHHHHhC--------------CCeEEEEcCCHHHHHHHH
Confidence 3568889999999999999999872 569999999999999853
No 179
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=93.16 E-value=0.076 Score=61.37 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=35.3
Q ss_pred ceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 755 PVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 755 pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
..++.+|||+|||.++++++...+.. ...++||++|+++|+.|.
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~----------~~~~~lil~Pt~~L~~q~ 173 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYYLEN----------YEGKILIIVPTTALTTQM 173 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHH----------CSSEEEEECSSHHHHHHH
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHHHc----------CCCeEEEEECCHHHHHHH
Confidence 35678999999999998877665533 134899999999999984
No 180
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=92.43 E-value=0.1 Score=66.39 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=37.1
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHh
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 809 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v 809 (1689)
...+++.+|||+|||+++++|.+.. +.+++|++||++|+.|.+
T Consensus 26 ~~~~~~~a~TGtGKT~~~l~~~~~~--------------~~~~~~~~~t~~l~~q~~ 68 (540)
T 2vl7_A 26 GKTLLLNAKPGLGKTVFVEVLGMQL--------------KKKVLIFTRTHSQLDSIY 68 (540)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHH--------------TCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHH
Confidence 3578899999999999999998653 468999999999999964
No 181
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.42 E-value=0.16 Score=64.84 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhc
Q psy14582 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGN 555 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~ 555 (1689)
.+++.|..++..++ +++.+++.+|.|+|||.+.. .++..+.. .+.++++++||...|.++.+.
T Consensus 189 ~L~~~Q~~Av~~~~-~~~~~~I~G~pGTGKTt~i~-~l~~~l~~----------~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLA-GHRLVVLTGGPGTGKSTTTK-AVADLAES----------LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHT-TCSEEEEECCTTSCHHHHHH-HHHHHHHH----------TTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-hCCEEEEEcCCCCCHHHHHH-HHHHHHHh----------cCCeEEEecCcHHHHHHhHhh
Confidence 57999999999888 67899999999999997643 33344432 345799999999999887643
No 182
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=91.08 E-value=0.22 Score=65.59 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
..+||-|.+++. ..+.+++|.|+-|||||.+..--+...+.... ....++++|+.|+..|.++.+.+.+
T Consensus 10 ~~Ln~~Q~~av~---~~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-------~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVR---TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-------VAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHH---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-------CCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHh---CCCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-------CCHHHeEEEeccHHHHHHHHHHHHH
Confidence 568999999985 24689999999999999998777766665321 1234799999999999998866543
No 183
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=90.80 E-value=0.19 Score=65.51 Aligned_cols=68 Identities=24% Similarity=0.135 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
.+||-|.+++. ..+.+++|.|+-|||||.+..--+...+.... ....++++|+.|+..|.++.+.+.+
T Consensus 2 ~L~~~Q~~av~---~~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-------~~~~~IL~lTfT~~Aa~em~~Rl~~ 69 (673)
T 1uaa_A 2 RLNPGQQQAVE---FVTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------YQARHIAAVTFTNKAAREMKERVGQ 69 (673)
T ss_dssp CCCHHHHHHHH---CCSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-------CCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHh---CCCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-------CCHHHeEEEeccHHHHHHHHHHHHH
Confidence 48999999985 24789999999999999988777766665421 1234799999999999998876643
No 184
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=90.72 E-value=0.14 Score=65.98 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=59.4
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH------------------------
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM------------------------ 808 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~------------------------ 808 (1689)
...+++.+|||+|||..+.+++++. +.+++|++|+|+|+.|+
T Consensus 232 ~~~vlv~ApTGSGKT~a~~l~ll~~--------------g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~~~~~ 297 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVPAAYAAQ--------------GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTITTG 297 (666)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHHT--------------TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEECCC
T ss_pred CCeEEEEeCCchhHHHHHHHHHHHC--------------CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEeccCC
Confidence 3457788999999999999887751 45899999999999983
Q ss_pred ----------------h-----hccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCC
Q psy14582 809 ----------------V-----GNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPN 857 (1689)
Q Consensus 809 ----------------v-----~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n 857 (1689)
+ +++|+||+|++.......+..++.. + .......++++|||+++
T Consensus 298 ~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~----l-~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 298 APVTYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQ----A-ETAGARLVVLATATPPG 362 (666)
T ss_dssp CSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHH----T-TTTTCSEEEEEESSCTT
T ss_pred CCEEEECcHHHHhCCCcccCcccEEEEccchhcCccHHHHHHHHHHh----h-hhcCCceEEEECCCCCc
Confidence 1 2388999998754333333333222 1 11222347888999985
No 185
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=90.01 E-value=0.37 Score=43.51 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=52.2
Q ss_pred CcccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhhcCCHHHHHHHHHHHhc
Q psy14582 1505 DSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNR 1561 (1689)
Q Consensus 1505 ~s~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll~l~~~q~~~v~~~~~~ 1561 (1689)
...|.+||+++..++.++.+.++.|+.++...+.++-..+.++++.+...+...++.
T Consensus 6 ~~~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 6 ADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp CHHHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred hhHHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 346889999999999999999999999999999999999899999999999888765
No 186
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=89.80 E-value=0.32 Score=67.86 Aligned_cols=71 Identities=23% Similarity=0.260 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
..+|+-|.+++. ..+++++|.|+-|||||.+.+-=++..+..... ..+.-+++++++|++.|.++.+.+..
T Consensus 9 ~~~t~eQ~~~i~---~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-----~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIV---STGQDILVAAAAGSGKTAVLVERMIRKITAEEN-----PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHH---CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-----CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHh---CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-----CCCccceEEEeccHHHHHHHHHHHHH
Confidence 358999999985 357899999999999999988777777764211 11334799999999999999877655
No 187
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=89.29 E-value=0.18 Score=56.82 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=33.1
Q ss_pred ceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 755 PVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 755 pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
.+++.+|||+|||..++.++... +.+++|++|+++|+.|.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~--------------~~~~liv~P~~~L~~q~ 149 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQW 149 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS--------------CSCEEEEESSHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEeCCHHHHHHH
Confidence 38888999999999988766542 45799999999999884
No 188
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.13 E-value=0.43 Score=61.38 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=33.1
Q ss_pred cceeEeecCCCchH--HHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 754 LPVSFRLPRGAGKT--NVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT--~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
..+++..|+|+||| ..++++.+..+.. ..+.++++++||..++.++
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---------~~~~~vll~APTg~AA~~L 212 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARL 212 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCS---------SCCCCEEEEBSSHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhh---------cCCCeEEEEeCChhHHHHH
Confidence 34677899999999 5566666654411 1356899999999988763
No 189
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=88.13 E-value=0.31 Score=63.91 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=60.2
Q ss_pred hCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHHHhhhhccchhhhcccCCceeEeccCCCHHHHH
Q psy14582 916 AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRT 995 (1689)
Q Consensus 916 ~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~ 995 (1689)
..+.|+||||+|+..++.++..|...+... ...||++...++.
T Consensus 458 ~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~-------------------------------------~vLnak~~~rEa~ 500 (922)
T 1nkt_A 458 AKGQPVLIGTTSVERSEYLSRQFTKRRIPH-------------------------------------NVLNAKYHEQEAT 500 (922)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHTTCCC-------------------------------------EEECSSCHHHHHH
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHCCCCE-------------------------------------EEecCChhHHHHH
Confidence 356799999999999999999998754433 3349999888898
Q ss_pred HHHHHHhcCCeEEEEEcchhccCCCCCCcc
Q psy14582 996 LVEDLFADRHIQVLVSTATLAWGVNLPAHT 1025 (1689)
Q Consensus 996 ~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~ 1025 (1689)
.+.+.|+.| .|+||||+++||+||+.+.
T Consensus 501 iia~agr~G--~VtIATnmAgRGtDI~l~~ 528 (922)
T 1nkt_A 501 IIAVAGRRG--GVTVATNMAGRGTDIVLGG 528 (922)
T ss_dssp HHHTTTSTT--CEEEEETTCSTTCCCCTTC
T ss_pred HHHhcCCCC--eEEEecchhhcCccccCCC
Confidence 999999888 6899999999999999764
No 190
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=87.73 E-value=0.52 Score=52.74 Aligned_cols=105 Identities=23% Similarity=0.182 Sum_probs=67.1
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhh----------------------
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG---------------------- 810 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~---------------------- 810 (1689)
...+.+.+|||+|||..+.++++....... .....++++++|+++|+.|..+
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~ 149 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFIQND------RAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFES 149 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHHHTT------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEE
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchhhcC------CCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhh
Confidence 345788899999999988888777654321 0124689999999999988411
Q ss_pred --------ccc---------------------cCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHH
Q psy14582 811 --------NFG---------------------KDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDV 861 (1689)
Q Consensus 811 --------liI---------------------iDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dv 861 (1689)
++| +||+|.. +...+.....+.. +....++.|++++|||+++.. +
T Consensus 150 ~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~----~~~~~~~~~~l~~-i~~~~~~~~~il~SAT~~~~~-~ 223 (235)
T 3llm_A 150 ILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHER----DINTDFLLVVLRD-VVQAYPEVRIVLMSATIDTSM-F 223 (235)
T ss_dssp ECCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSC----CHHHHHHHHHHHH-HHHHCTTSEEEEEECSSCCHH-H
T ss_pred ccCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccC----CcchHHHHHHHHH-HHhhCCCCeEEEEecCCCHHH-H
Confidence 111 2777742 2222222222222 222345788999999999755 8
Q ss_pred HHHhhcCC
Q psy14582 862 ATLLRIKP 869 (1689)
Q Consensus 862 a~~L~~~~ 869 (1689)
++|++..+
T Consensus 224 ~~~~~~~p 231 (235)
T 3llm_A 224 CEYFFNCP 231 (235)
T ss_dssp HHHTTSCC
T ss_pred HHHcCCCC
Confidence 88887653
No 191
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=86.79 E-value=0.45 Score=61.82 Aligned_cols=71 Identities=25% Similarity=0.292 Sum_probs=50.1
Q ss_pred CcceeehhhHHHHhhc--ccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecC-----HHHHHHHhcccCCCC
Q psy14582 1023 AHTVVDRTLVEDLFAD--RHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELG-----ALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~--g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s-----~~d~lQm~GRAGR~g 1095 (1689)
+..--+|..+++.|++ |.+++||||+++++|+|+| +.-...|+..+..|.+-. +.+..+...|+||+|
T Consensus 353 ~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi~-----v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAG 427 (677)
T 3rc3_A 353 SLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLS-----IRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAG 427 (677)
T ss_dssp TSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCCC-----BSEEEESCSBC-----------CBCCHHHHHHHHTTBT
T ss_pred cCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCcC-----ccEEEECCccccccccCCccccccCCHHHHHHHhcCCC
Confidence 3444478899999999 9999999999999999994 444444554332111111 456889999999999
Q ss_pred CCCcc
Q psy14582 1096 YDTKG 1100 (1689)
Q Consensus 1096 ~d~~G 1100 (1689)
+.|
T Consensus 428 --R~g 430 (677)
T 3rc3_A 428 --RFS 430 (677)
T ss_dssp --CTT
T ss_pred --CCC
Confidence 555
No 192
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=86.38 E-value=0.26 Score=67.00 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHhc-CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccc
Q psy14582 480 KTLNRIQSRLCKSALES-DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~-g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~k 558 (1689)
.+|+|+|.+++..++.. +.++|++++||+|||.+++..+...+... ...+++||+|+ +|+.|...+|.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g---------~~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG---------AAERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS---------SCCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC---------CCCeEEEEeCH-HHHHHHHHHHHH
Confidence 57999999999887743 56899999999999999988887666532 22379999999 999998866643
No 193
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=85.33 E-value=0.45 Score=62.37 Aligned_cols=41 Identities=22% Similarity=0.109 Sum_probs=33.4
Q ss_pred eEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 757 SFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 757 ~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
+..++||+|||+++.+|++..... +.++++++||++||.|.
T Consensus 96 IaeakTGeGKTLvf~Lp~~L~aL~-----------G~qv~VvTPTreLA~Qd 136 (997)
T 2ipc_A 96 IAEMKTGEGKTLVATLAVALNALT-----------GKGVHVVTVNDYLARRD 136 (997)
T ss_dssp EEECCSTHHHHHHHHHHHHHHHTT-----------CSCCEEEESSHHHHHHH
T ss_pred eeeccCCCchHHHHHHHHHHHHHh-----------CCCEEEEeCCHHHHHHH
Confidence 566889999999999999644322 45799999999999993
No 194
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=83.89 E-value=0.35 Score=62.94 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=49.8
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecC------HHHHHHHhcccCCCC
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELG------ALDVLQMLGRAGRPQ 1095 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s------~~d~lQm~GRAGR~g 1095 (1689)
+.+..+|..+++.|++|.+++||||+.++.|+|+|...+|| .+. +.+....+.|+||.|
T Consensus 472 ~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI--------------~~d~d~~G~p~s~~~~iQr~GRag 536 (664)
T 1c4o_A 472 ELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVA--------------ILDADKEGFLRSERSLIQTIGRAA 536 (664)
T ss_dssp TCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEE--------------ETTTTSCSGGGSHHHHHHHHGGGT
T ss_pred CCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEE--------------EeCCcccCCCCCHHHHHHHHCccC
Confidence 44555899999999999999999999999999999866554 233 678889999999986
No 195
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=83.11 E-value=0.38 Score=62.58 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=49.0
Q ss_pred CcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCC
Q psy14582 1023 AHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRP 1094 (1689)
Q Consensus 1023 ~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~ 1094 (1689)
+.+..+|..+++.|++|.+++||||..++.|+|+|...+||. ||.. ..--+.+..+.+.|+||.
T Consensus 478 ~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~----~d~d----~~G~p~s~~~~iQr~GRa 541 (661)
T 2d7d_A 478 EIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI----LDAD----KEGFLRSERSLIQTIGRA 541 (661)
T ss_dssp TCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEE----TTTT----CCTTTTSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEE----eCcc----cccCCCCHHHHHHHhCcc
Confidence 455558999999999999999999999999999998665542 3321 000156788999999994
No 196
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=82.48 E-value=1.2 Score=47.20 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=28.4
Q ss_pred CCCCCCHHHHHHHHHHH--------hcCCcEEEEccCCCChHHHHHH
Q psy14582 478 DFKTLNRIQSRLCKSAL--------ESDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 478 g~~~~tpiQ~~aip~al--------~~g~nvLv~APTGSGKT~a~lL 516 (1689)
+|...++-|.+++..+. ..|+.+++++|+|+|||..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 11 TYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHH
Confidence 44434567777776553 3578999999999999987654
No 197
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=81.24 E-value=1.9 Score=49.45 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHHHHHHcCCceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCC
Q psy14582 1186 CHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVR 1265 (1689)
Q Consensus 1186 ~~~~~lv~~al~~L~~~~~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR 1265 (1689)
..-.+.+..|+..|...|+|+-+ | .+|++|+.+|.++++|...+++.......|. .+++.|.|.-++ .++.+|
T Consensus 14 pP~~~~l~~A~~~L~~LgAld~~---g--~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~-~~~l~iaA~Ls~-~~~f~~ 86 (270)
T 3i4u_A 14 GSPMETLITAMEQLYTLGALDDE---G--LLTRLGRRMAEFPLEPMLCKMLIMSVHLGCS-EEMLTIVSMLSV-QNVFYR 86 (270)
T ss_dssp CCHHHHHHHHHHHHHHHTSBCTT---S--CBCHHHHHHTTSCSCHHHHHHHHHHHHTTCH-HHHHHHHHHHTS-SCCBCC
T ss_pred CcCHHHHHHHHHHHHHcCCcCCC---C--CccHHHHHHHhCCCCHHHHHHHHHhhhcCCH-HHHHHHHHHHCC-CccccC
Confidence 34456789999999999999732 3 6899999999999999999999887665553 466666665433 466666
Q ss_pred hHHHHH
Q psy14582 1266 EEEKLE 1271 (1689)
Q Consensus 1266 ~~E~~~ 1271 (1689)
..++.+
T Consensus 87 p~~~~~ 92 (270)
T 3i4u_A 87 PKDKQA 92 (270)
T ss_dssp CGGGHH
T ss_pred CchhHH
Confidence 555433
No 198
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=81.09 E-value=2.6 Score=39.22 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=44.4
Q ss_pred CCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhhcCCHHHHHHHHHHHh
Q psy14582 1511 LPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCN 1560 (1689)
Q Consensus 1511 lPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll~l~~~q~~~v~~~~~ 1560 (1689)
.|.++++.++.+++++|.|+.||+..++.+-.++++++-+.+.++.+.+.
T Consensus 9 ~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~ 58 (83)
T 2kz3_A 9 CPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLL 58 (83)
T ss_dssp STTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999887766665553
No 199
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=78.96 E-value=3.1 Score=50.18 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhc
Q psy14582 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGN 555 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~ 555 (1689)
.|+|+|...+..+. ..+-++++.+-+.|||.++...++..+... .+..+++++||+.-|..++..
T Consensus 163 ~L~p~Qk~il~~l~-~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~---------~g~~v~~vA~t~~qA~~vf~~ 227 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDR 227 (385)
T ss_dssp CCCHHHHHHHHHHH-HSSEEEEEECSSSCHHHHHHHHHHHHHHSS---------SSCEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhc-cCcEEEEEEcCcCChhHHHHHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHH
Confidence 68999999986543 346689999999999998777666544321 345899999999999887743
No 200
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=78.65 E-value=1.7 Score=38.34 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=45.0
Q ss_pred CCccccCCCCCHHHHHHHHhcCCCchhhccCChhhhhhhhcCChh-hHHHHHHHHh
Q psy14582 1361 MSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKL-GKTIHKYVHQ 1415 (1689)
Q Consensus 1361 ~~pLrQ~~~i~~~~i~~~~~~~~~~~~l~dl~~~el~~ll~~~~~-g~~i~~~~~~ 1415 (1689)
.+.|..+||+++...++|=++=-+++.+..++.+|+.+++. ++. ++.|+++++.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig-~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHT 57 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHS-CHHHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcC-chHHHHHHHHHHhc
Confidence 45788999999999998865544899999999999999966 455 8889998864
No 201
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=78.11 E-value=0.57 Score=53.84 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=37.4
Q ss_pred cceeehhhHHHHhhcc-cce-EEEEcccccccCCCCCceEEEeceeeecCCCCcceec-CHHHHHHHhcccCCCCCCCcc
Q psy14582 1024 HTVVDRTLVEDLFADR-HIQ-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVEL-GALDVLQMLGRAGRPQYDTKG 1100 (1689)
Q Consensus 1024 V~~V~R~~~~~~f~~g-~i~-vLVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~-s~~d~lQm~GRAGR~g~d~~G 1100 (1689)
...-+|..+++.|+++ .++ +|+||..++.|+|+|+- ...+-+ ++-+.....-|.||.+ +.|
T Consensus 147 ~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a--------------~~VI~~d~~wnp~~~~Q~~gR~~--R~G 210 (271)
T 1z5z_A 147 LSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA--------------NRVIHFDRWWNPAVEDQATDRVY--RIG 210 (271)
T ss_dssp SCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTC--------------SEEEECSCCSCTTTC-------------
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccC--------------CEEEEECCCCChhHHHHHHHhcc--ccC
Confidence 3344899999999999 677 78999999999999965 123344 3445667788888876 555
No 202
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=77.04 E-value=1.5 Score=44.93 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.7
Q ss_pred HhcCCcEEEEccCCCChHHHHHH
Q psy14582 494 LESDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~lL 516 (1689)
...+.++++.+|+|+|||..+-.
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHHH
Confidence 34788999999999999988753
No 203
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=76.92 E-value=1.6 Score=44.78 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=18.3
Q ss_pred HhcCCcEEEEccCCCChHHHH
Q psy14582 494 LESDENLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~ 514 (1689)
...+.++++++|+|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 347889999999999999765
No 204
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=76.61 E-value=3.7 Score=52.52 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhc
Q psy14582 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGN 555 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~ 555 (1689)
.|+|+|...+..+. ..+.+++.+|-|+|||.+...-++-.+... .+.++++++|++..|.+++..
T Consensus 163 ~l~p~Q~~i~~~l~-~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---------~~~~i~~va~t~~qA~~~~~~ 227 (592)
T 3cpe_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDR 227 (592)
T ss_dssp CCCHHHHHHHHHHH-HCSEEEEEECSSSCHHHHHHHHHHHHHHTS---------SSCEEEEEESSHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhc-cccEEEEEEcCccChHHHHHHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHH
Confidence 58999999887553 467789999999999998766555444432 245899999999999987743
No 205
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=73.61 E-value=2.2 Score=53.57 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHH
Q psy14582 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~ 514 (1689)
..+++.+..-+..++..|.++++++|||||||-..
T Consensus 243 G~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 243 GTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp TSSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 34566666666667778999999999999999653
No 206
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=72.77 E-value=3 Score=37.49 Aligned_cols=52 Identities=10% Similarity=0.213 Sum_probs=42.4
Q ss_pred ccccCCCCCHHHHHHHHhcCC-CchhhccCChhhhhhhhcCChh-hHHHHHHHH
Q psy14582 1363 PLRQFRKIPEEIIKKIEKKNF-PWERLYDLGPNEIGELIRVPKL-GKTIHKYVH 1414 (1689)
Q Consensus 1363 pLrQ~~~i~~~~i~~~~~~~~-~~~~l~dl~~~el~~ll~~~~~-g~~i~~~~~ 1414 (1689)
+|.+++|+++..+.+|.+.|+ +++++...+.+++..+..+... ..++...++
T Consensus 8 ~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr 61 (70)
T 1wcn_A 8 DLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAAR 61 (70)
T ss_dssp HHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 688999999999999999999 9999999999999998876543 344444433
No 207
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=72.22 E-value=2 Score=40.16 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=44.7
Q ss_pred CccccCCCCCHHHHHHHHhcCCCchhhccCChhhhhhhhcCChh-hHHHHHHHHh
Q psy14582 1362 SPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKL-GKTIHKYVHQ 1415 (1689)
Q Consensus 1362 ~pLrQ~~~i~~~~i~~~~~~~~~~~~l~dl~~~el~~ll~~~~~-g~~i~~~~~~ 1415 (1689)
+.|..+|||++...++|=++=-+++.+..++.+||.+++. .+. ++.|+++++.
T Consensus 18 s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig-~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHT 71 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHS-CHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhC-chHHHHHHHHHHHh
Confidence 5688999999999999866544899999999999999976 445 8889998864
No 208
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=69.85 E-value=7.2 Score=41.91 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.6
Q ss_pred CcEEEEccCCCChHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lL 516 (1689)
.++++++|+|+|||..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~ 73 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA 73 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 7899999999999987643
No 209
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=68.55 E-value=7.3 Score=44.87 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCChHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLp 517 (1689)
+.++++++|+|+|||..+-.-
T Consensus 67 ~~~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 457999999999999887543
No 210
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=67.65 E-value=1.3 Score=55.14 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHH---hcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 480 KTLNRIQSRLCKSAL---ESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al---~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
..|+|+|.++++.+. ..++++|+++|||+|||++++..+....... ...++|||+| .+|+.|...+|
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~---------~~~~~LIv~P-~~l~~qw~~e~ 105 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN---------ELTPSLVICP-LSVLKNWEEEL 105 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT---------CCSSEEEEEC-STTHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC---------CCCCEEEEcc-HHHHHHHHHHH
Confidence 469999999987653 4688999999999999999866554433211 2347999999 56888877554
No 211
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=66.75 E-value=15 Score=39.34 Aligned_cols=20 Identities=40% Similarity=0.678 Sum_probs=16.5
Q ss_pred CcEEEEccCCCChHHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLp 517 (1689)
.++++++|+|+|||..+..-
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l 58 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIAL 58 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46999999999999876443
No 212
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=66.30 E-value=4.7 Score=49.29 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=30.7
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ 550 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~ 550 (1689)
...++++.||||||||... -+++..+... +..++++=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~----------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR----------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT----------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC----------CCcEEEEeCCCchhH
Confidence 3589999999999999974 3444444432 236777777777754
No 213
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=61.86 E-value=3.2 Score=56.46 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceEEEEcccccccCCCCCceEEEeceeeecC
Q psy14582 992 VDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 1071 (1689)
Q Consensus 992 ~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~vLVaT~TLa~GvNLPa~~VII~gt~~yd~ 1071 (1689)
..|..+.+.|++|.++|||+|+++.+|+|+|.++++ ++|.
T Consensus 636 ~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tl----------------------------------------ylDk 675 (1038)
T 2w00_A 636 NYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTL----------------------------------------FVDK 675 (1038)
T ss_dssp HHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEE----------------------------------------EEES
T ss_pred HHHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEE----------------------------------------EEcc
Confidence 468899999999999999999999999999988444 2332
Q ss_pred CCCcceecCHHHHHHHhcccCCCCCC--CccEEEEEec
Q psy14582 1072 EKGRWVELGALDVLQMLGRAGRPQYD--TKGEGVLITN 1107 (1689)
Q Consensus 1072 ~~~~~~~~s~~d~lQm~GRAGR~g~d--~~G~~iil~~ 1107 (1689)
+++...|+|++||+||.+.+ ..|.+|-+..
T Consensus 676 ------pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 676 ------NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp ------CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred ------CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 24577999999999999743 2355554443
No 214
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=61.39 E-value=7.5 Score=44.61 Aligned_cols=20 Identities=45% Similarity=0.740 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
+.++++++|+|+|||..+-.
T Consensus 50 ~~~vll~G~~GtGKT~la~~ 69 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARR 69 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 67899999999999987753
No 215
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=59.82 E-value=16 Score=46.49 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=38.9
Q ss_pred ceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH--------------------------
Q psy14582 755 PVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM-------------------------- 808 (1689)
Q Consensus 755 pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~-------------------------- 808 (1689)
.+++.-|.|+|||.... .++..+.. .+.++++++||...+..+
T Consensus 206 ~~~I~G~pGTGKTt~i~-~l~~~l~~----------~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTK-AVADLAES----------LGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp EEEEECCTTSCHHHHHH-HHHHHHHH----------TTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSS
T ss_pred EEEEEcCCCCCHHHHHH-HHHHHHHh----------cCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhh
Confidence 46677899999997532 23332222 256899999998776652
Q ss_pred -----hhccccCCceeec
Q psy14582 809 -----VGNFGKDEIHLLH 821 (1689)
Q Consensus 809 -----v~liIiDEiHll~ 821 (1689)
.+++||||++++.
T Consensus 275 ~~~~~~dvlIIDEasml~ 292 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMG 292 (574)
T ss_dssp SSCCSCSEEEECCGGGCC
T ss_pred cccccCCEEEEcCccCCC
Confidence 3679999999875
No 216
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=59.30 E-value=15 Score=43.18 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHH---HhcCC---cEEEEccCCCChHHHHHHHH
Q psy14582 482 LNRIQSRLCKSA---LESDE---NLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 482 ~tpiQ~~aip~a---l~~g~---nvLv~APTGSGKT~a~lLpi 518 (1689)
+.|||..++..+ +.+|+ .+|+++|.|+|||..+..-+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHH
Confidence 357777766543 33443 48999999999998876554
No 217
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=58.90 E-value=5.6 Score=44.92 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=18.7
Q ss_pred HhcCCcEEEEccCCCChHHHHH
Q psy14582 494 LESDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~l 515 (1689)
...+.++++++|+|+|||..+-
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHH
T ss_pred hCCCCCEEEECCCCCcHHHHHH
Confidence 3467899999999999998763
No 218
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=58.46 E-value=7.4 Score=45.34 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=18.0
Q ss_pred CCcEEEEccCCCChHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLp 517 (1689)
+.++++++|||+|||..+..-
T Consensus 152 ~~~lll~G~~GtGKT~La~ai 172 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAM 172 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 689999999999999877543
No 219
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=57.33 E-value=76 Score=31.81 Aligned_cols=87 Identities=9% Similarity=0.191 Sum_probs=56.4
Q ss_pred hcCCcEEEEEEEeccccccCCCeEEEEEEEEecCCCCCccccCCCCCCCcccEEEEEEeCCCCeEEEEEeeccC--cceE
Q psy14582 1560 NRYPNIELSYEVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQ--QKAK 1637 (1689)
Q Consensus 1560 ~~~P~iei~~~v~~~~~i~~g~~~~l~v~l~R~~~~~~~v~aP~fP~~K~e~Wwvvvgd~~~~~l~~ikrv~~~--~~~~ 1637 (1689)
...|++.+ ++.....+.+|+.++++|+++=.+... |+-|. -.|++ .|+++.-..++|. ...+
T Consensus 14 ~~~pDL~V--~is~P~~v~~G~~~ti~vtV~N~G~~~----a~~~~----V~lyv------ng~~v~t~~v~La~G~s~t 77 (127)
T 3idu_A 14 FEFPDLTV--EIKGPDVVGVNKLAEYEVHVKNLGGIG----VPSTK----VRVYI------NGTLYKNWTVSLGPKEEKV 77 (127)
T ss_dssp CSSCCEEE--EEESCSEECTTCCEEEEEEEEECSSSC----EEEEE----EEEEE------TTEEEEEEEEEECTTCEEE
T ss_pred ccCCCeEE--EecCCCcccCCCEEEEEEEEEECCCCc----cCCcE----EEEEE------CCEEEeeEEeccCCCCeEE
Confidence 45677777 566778899999999999998654322 22121 12222 5667654445554 4555
Q ss_pred EEEEeeCCCCceEEEEEEEEcCCCC
Q psy14582 1638 IKLDFVAPNPGHHSYALYFMSDAYL 1662 (1689)
Q Consensus 1638 ~~l~f~~p~~G~~~~~l~~~sDsY~ 1662 (1689)
+.+.+.+..+|.|+++..+-++..+
T Consensus 78 v~f~~~~~~~G~~~v~AvVD~~n~I 102 (127)
T 3idu_A 78 LTFNWTPTQEGMYRINATVDEENTV 102 (127)
T ss_dssp EEEEECCSSCEEEEEEEEESTTCCS
T ss_pred EEEEEEcCCCcEEEEEEEEcCCCcE
Confidence 6666664468999888888777765
No 220
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=56.75 E-value=17 Score=45.25 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=17.8
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
...++|+++|+|+|||.++-.
T Consensus 237 ~~~~vLL~GppGtGKT~lAra 257 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARA 257 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHH
Confidence 457899999999999998743
No 221
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=55.63 E-value=8.7 Score=46.20 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=28.6
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhh
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL 548 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreL 548 (1689)
.+.|+++++|||||||...-.-+.+... .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~-----------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM-----------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT-----------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH-----------CCCEEEEEeCCcCH
Confidence 5789999999999999766554433322 22367777776543
No 222
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=55.62 E-value=19 Score=41.53 Aligned_cols=19 Identities=47% Similarity=0.758 Sum_probs=16.4
Q ss_pred cEEEEccCCCChHHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lLp 517 (1689)
++++++|+|+|||..+..-
T Consensus 48 ~~ll~G~~G~GKT~la~~l 66 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALAL 66 (327)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHH
Confidence 7999999999999887543
No 223
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=55.28 E-value=9.6 Score=41.21 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=27.2
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccch
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR 546 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtr 546 (1689)
|.=.++++|.|||||.+++--+.+... .+.+++++-|++
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~-----------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKI-----------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH-----------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH-----------CCCEEEEEEecc
Confidence 455689999999999877655544332 345788888874
No 224
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=55.05 E-value=9.4 Score=42.11 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=27.3
Q ss_pred hcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
..|+-+++++|+|||||..++--+...+. .+.+++|+.-
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~-----------~~~~v~~~~~ 59 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLK-----------MGEPGIYVAL 59 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHH-----------TTCCEEEEES
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHh-----------cCCeEEEEEc
Confidence 46888999999999999886554444332 1236777753
No 225
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=54.32 E-value=8.9 Score=42.56 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=28.5
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccch
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR 546 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtr 546 (1689)
.|.-+++++|+|+|||.+++-.+.+... .+.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~-----------~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY-----------ADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH-----------TTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh-----------cCCEEEEEEecc
Confidence 4666789999999999877555544333 234788887765
No 226
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=54.05 E-value=24 Score=39.26 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=16.0
Q ss_pred ccccceeEeecCCCchHHHHH
Q psy14582 751 ETILPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 751 e~~~pv~~~aPTGsGKT~~~l 771 (1689)
....++.+.-|+|+|||....
T Consensus 37 ~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 344567888999999998654
No 227
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=53.86 E-value=5.5 Score=41.65 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCChHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~l 515 (1689)
+.++++++|+|+|||..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4789999999999998764
No 228
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=53.61 E-value=23 Score=40.54 Aligned_cols=93 Identities=22% Similarity=0.189 Sum_probs=45.5
Q ss_pred cceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccch--------------hHHHH-HhhccccCCce
Q psy14582 754 LPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR--------------SLVQE-MVGNFGKDEIH 818 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r--------------~L~~q-~v~liIiDEiH 818 (1689)
.++.+.-|+|+|||..... +.+.+.... ......++++.+.. .+..+ .-++++|||+|
T Consensus 68 ~~vll~G~~GtGKT~la~~-la~~l~~~~------~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid 140 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALK-MAGLLHRLG------YVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAY 140 (309)
T ss_dssp CEEEEEECTTSSHHHHHHH-HHHHHHHTT------SSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGG
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHhcC------CcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChh
Confidence 4678889999999987642 112221110 00112344444321 11111 24689999999
Q ss_pred eecCCch--hHHHHHHHHHHHHHHhccccceEEEEec
Q psy14582 819 LLHDERG--PVLEALIARTIRNIEATQEDVRLVGLSA 853 (1689)
Q Consensus 819 ll~d~rG--~~lE~iv~r~~~~~~~~~~~~riV~lSA 853 (1689)
.+...++ ..-...+..++..+.....++++|+.+.
T Consensus 141 ~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~ 177 (309)
T 3syl_A 141 YLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGY 177 (309)
T ss_dssp GSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEEC
T ss_pred hhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 8854221 0111122233334444455666666554
No 229
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=53.38 E-value=48 Score=38.73 Aligned_cols=23 Identities=0% Similarity=-0.044 Sum_probs=16.9
Q ss_pred CCCeEEEEeCChHHHHHHHHHHH
Q psy14582 917 GRNQLLVFVHSRKETGKTARAIR 939 (1689)
Q Consensus 917 ~~~~vLVFv~srk~~~~~a~~L~ 939 (1689)
.+++++||++..+.-.-+...+.
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~ 146 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLL 146 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHT
T ss_pred CCCEEEEEECChhHHHHHHHHHh
Confidence 46799999998877665555544
No 230
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=53.00 E-value=14 Score=39.59 Aligned_cols=39 Identities=18% Similarity=0.088 Sum_probs=26.9
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccch
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR 546 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtr 546 (1689)
|.-.++++|.|||||..++--+.+... .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~-----------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL-----------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-----------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH-----------CCCeEEEEeecc
Confidence 455789999999999887544433332 234788888874
No 231
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=51.71 E-value=7.8 Score=45.02 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=18.7
Q ss_pred hcCCcEEEEccCCCChHHHHHH
Q psy14582 495 ESDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lL 516 (1689)
..+.++++++|||+|||.++-.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHH
Confidence 4678999999999999987643
No 232
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=51.33 E-value=11 Score=48.89 Aligned_cols=40 Identities=18% Similarity=0.085 Sum_probs=32.1
Q ss_pred eEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHH
Q psy14582 757 SFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 807 (1689)
Q Consensus 757 ~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q 807 (1689)
+..+.||+|||+++.+|++-.-.. +..+.+++|++.||.+
T Consensus 92 iaEM~TGEGKTLva~lp~~lnAL~-----------G~~vhVvT~ndyLA~r 131 (822)
T 3jux_A 92 VAEMKTGEGKTLAATMPIYLNALI-----------GKGVHLVTVNDYLARR 131 (822)
T ss_dssp EEECCTTSCHHHHTHHHHHHHHTT-----------SSCEEEEESSHHHHHH
T ss_pred hhhccCCCCccHHHHHHHHHHHhc-----------CCceEEEeccHHHHHh
Confidence 455789999999999997643222 5678999999999998
No 233
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=51.27 E-value=8 Score=49.96 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHH--------hcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHh
Q psy14582 480 KTLNRIQSRLCKSAL--------ESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 551 (1689)
Q Consensus 480 ~~~tpiQ~~aip~al--------~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Q 551 (1689)
..|+|+|.+++.-++ ..+.+.|++.+||+|||+.++..+...+...... .+...++|+|+|+ +|+.|
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~----~p~~~~~LiV~P~-sll~q 128 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC----KPEIDKVIVVSPS-SLVRN 128 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS----SCSCSCEEEEECH-HHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc----cCCCCcEEEEecH-HHHHH
Confidence 368999999998764 3467799999999999999988887665532111 1123469999997 88888
Q ss_pred hhhccc
Q psy14582 552 MVGNFG 557 (1689)
Q Consensus 552 i~~~f~ 557 (1689)
...+|.
T Consensus 129 W~~E~~ 134 (644)
T 1z3i_X 129 WYNEVG 134 (644)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 775553
No 234
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=51.15 E-value=6.6 Score=46.31 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCChHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLp 517 (1689)
+..+++++|||||||..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999887544
No 235
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=50.91 E-value=5.2 Score=41.78 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCChHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLp 517 (1689)
..++++++|+|+|||..+..-
T Consensus 43 ~~~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 578999999999999876533
No 236
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=50.63 E-value=6.4 Score=45.88 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=15.4
Q ss_pred cEEEEccCCCChHHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lLp 517 (1689)
-+++++|||||||..+.--
T Consensus 12 ~i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIEL 30 (316)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 4688999999999887543
No 237
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.40 E-value=37 Score=41.00 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=18.2
Q ss_pred cCCcEEEEccCCCChHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLp 517 (1689)
..+.+|+.+|.|+|||+.+-..
T Consensus 181 ~prGvLL~GPPGTGKTllAkAi 202 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAV 202 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHH
Confidence 3578999999999999887443
No 238
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=50.28 E-value=15 Score=39.95 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=32.2
Q ss_pred HHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccch
Q psy14582 490 CKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR 546 (1689)
Q Consensus 490 ip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtr 546 (1689)
+..+-....++++..++|.|||-+++-..++.+.+ |.+++|+--.+
T Consensus 21 ~~~~~~~~g~i~v~tG~GkGKTTaA~GlalRA~g~-----------G~rV~~vQF~K 66 (196)
T 1g5t_A 21 VAQAQEERGIIIVFTGNGKGKTTAAFGTAARAVGH-----------GKNVGVVQFIK 66 (196)
T ss_dssp ------CCCCEEEEESSSSCHHHHHHHHHHHHHHT-----------TCCEEEEESSC
T ss_pred hhhccccCceEEEECCCCCCHHHHHHHHHHHHHHC-----------CCeEEEEEeeC
Confidence 33333356799999999999999999999888873 45777764433
No 239
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=50.27 E-value=13 Score=45.66 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=28.2
Q ss_pred ceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHH
Q psy14582 755 PVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 807 (1689)
Q Consensus 755 pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q 807 (1689)
++.+..|.|+|||.... .++..+... ...++++++||...+.+
T Consensus 47 ~~li~G~aGTGKT~ll~-~~~~~l~~~---------~~~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 47 HVTINGPAGTGATTLTK-FIIEALIST---------GETGIILAAPTHAAKKI 89 (459)
T ss_dssp EEEEECCTTSCHHHHHH-HHHHHHHHT---------TCCCEEEEESSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH-HHHHHHHhc---------CCceEEEecCcHHHHHH
Confidence 78889999999996542 333333221 12368899998776553
No 240
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=50.19 E-value=14 Score=42.99 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=48.1
Q ss_pred ccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhhcCCHHHHHHHHHHHhc
Q psy14582 1507 YLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNR 1561 (1689)
Q Consensus 1507 ~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll~l~~~q~~~v~~~~~~ 1561 (1689)
+|..||++++..++++++.++.|+.+++..+.++..++..+++++..++...+..
T Consensus 4 ~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~ 58 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 58 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred cHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999888888888999888887776643
No 241
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=49.82 E-value=6.8 Score=42.88 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCChHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLp 517 (1689)
.+.++++++|+|+|||..+..-
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l 72 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAA 72 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4688999999999999876433
No 242
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=49.56 E-value=7.8 Score=45.66 Aligned_cols=24 Identities=33% Similarity=0.666 Sum_probs=19.4
Q ss_pred HHHHHhcCCcEEEEccCCCChHHH
Q psy14582 490 CKSALESDENLLLCAPTGAGKTNV 513 (1689)
Q Consensus 490 ip~al~~g~nvLv~APTGSGKT~a 513 (1689)
+...+..|+.+++++|||||||-.
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHH
T ss_pred hhhhccCCCEEEEECCCCCCHHHH
Confidence 334456799999999999999963
No 243
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=49.41 E-value=7.3 Score=47.65 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=31.0
Q ss_pred EEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhccc
Q psy14582 500 LLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFG 557 (1689)
Q Consensus 500 vLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~ 557 (1689)
.++.|+-|||||....-- +. . .+.++++||++++.++.+.+.
T Consensus 164 ~~I~G~aGsGKTt~I~~~----~~-~-----------~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSR----VN-F-----------EEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEECTTSCHHHHHHHH----CC-T-----------TTCEEEESCHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHH----hc-c-----------CCeEEEeCCHHHHHHHHHHhh
Confidence 489999999999865221 11 0 146999999999999876653
No 244
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=49.23 E-value=12 Score=44.75 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=20.2
Q ss_pred HHHHHhcCCcEEEEccCCCChHHHH
Q psy14582 490 CKSALESDENLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 490 ip~al~~g~nvLv~APTGSGKT~a~ 514 (1689)
+...+..|+.+++++|||||||-..
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHH
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHH
Confidence 3445668999999999999999654
No 245
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=49.16 E-value=6.9 Score=45.67 Aligned_cols=20 Identities=25% Similarity=0.502 Sum_probs=15.8
Q ss_pred CcEEEEccCCCChHHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLp 517 (1689)
.-+++++|||||||..+.--
T Consensus 4 ~~i~i~GptgsGKt~la~~L 23 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVML 23 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHH
Confidence 34688999999999877443
No 246
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=48.74 E-value=12 Score=41.40 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=21.2
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHh
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIG 523 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~ 523 (1689)
.|.-++++|++|+|||..++--+.+.+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~ 56 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE 56 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 6788999999999999776554444333
No 247
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=48.45 E-value=25 Score=36.02 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=17.9
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.|+.+++++|+|+|||..+-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 578999999999999976544
No 248
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=47.60 E-value=37 Score=38.36 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=16.0
Q ss_pred ccccceeEeecCCCchHHHHH
Q psy14582 751 ETILPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 751 e~~~pv~~~aPTGsGKT~~~l 771 (1689)
....++.+.-|+|+|||....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHH
Confidence 344567888999999997654
No 249
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=47.28 E-value=9.5 Score=47.59 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=19.9
Q ss_pred HHHhcCCcEEEEccCCCChHHHHH
Q psy14582 492 SALESDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 492 ~al~~g~nvLv~APTGSGKT~a~l 515 (1689)
.++..+.++|+++|+|+|||..+-
T Consensus 36 ~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 36 LAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHTCEEEEECCSSSSHHHHHH
T ss_pred HHHhcCCeeEeecCchHHHHHHHH
Confidence 344479999999999999998763
No 250
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=47.20 E-value=8.2 Score=45.89 Aligned_cols=21 Identities=48% Similarity=0.672 Sum_probs=18.0
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.+.++|+++|+|+|||.++-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 457899999999999998744
No 251
>2l3b_A Conserved protein found in conjugate transposon; beta, structural genomics, PSI-biology; NMR {Bacteroides thetaiotaomicron}
Probab=46.93 E-value=70 Score=31.69 Aligned_cols=97 Identities=16% Similarity=0.305 Sum_probs=58.5
Q ss_pred cccccCCCeEEEEEEEEecCCCCCccccCCCCCCCcccEEEEEEeCCCCeEEEEE-eeccCcceEEEEEeeCCCCceEEE
Q psy14582 1574 KDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIK-RLTLQQKAKIKLDFVAPNPGHHSY 1652 (1689)
Q Consensus 1574 ~~~i~~g~~~~l~v~l~R~~~~~~~v~aP~fP~~K~e~Wwvvvgd~~~~~l~~ik-rv~~~~~~~~~l~f~~p~~G~~~~ 1652 (1689)
...|..|+.|.|..+|.|++.-....|.=+|-.+-=.|= |-. .+|..+-+. +..| .+..++|=.+.-.....++
T Consensus 21 ~k~I~~GeTvEIR~~L~reG~f~~t~Y~IRYFQ~dGkG~-L~~---~dg~~l~PND~YpL-~~~~FRLYYtS~s~~~q~i 95 (130)
T 2l3b_A 21 PKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGT-LKM---SDGTVLLPNDLYPL-PGETFRLYYTSASTDQQTV 95 (130)
T ss_dssp CSSCCTTCEEEEEEEEECSSCCSSCCCEEEEECSSCCCE-EEE---TTSCEECTTSCEEC-SCSEEEEEEECCCSSCEEE
T ss_pred ccccCCCCeEEEEEEEecCceecccEEEEEEEeecCCee-EEe---CCCCEecCCccccc-CcCeEEEEEecCCCCCceE
Confidence 467999999999999999876554444433322221111 111 122222111 1112 2456788777777788999
Q ss_pred EEEEEcCCCCCCCceEEEEEEeecC
Q psy14582 1653 ALYFMSDAYLGCDQEYKFSIDVSEY 1677 (1689)
Q Consensus 1653 ~l~~~sDsY~G~D~e~~~~l~V~~~ 1677 (1689)
.+|+ .|++ |--++.+|.++.+..
T Consensus 96 dv~v-eDnf-Gq~~ql~f~Fn~~~~ 118 (130)
T 2l3b_A 96 DVYF-QDSF-GQLQQLTFSFNNDSS 118 (130)
T ss_dssp EEEE-ECTT-SCEEEEEEEESCCCS
T ss_pred EEEE-EcCC-CCEEEEEEEccCCCC
Confidence 9986 5887 766677777776653
No 252
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.71 E-value=42 Score=40.86 Aligned_cols=21 Identities=33% Similarity=0.533 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCChHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLp 517 (1689)
.+-+|+++|.|+|||..+-.-
T Consensus 206 prGiLL~GPPGtGKT~lakAi 226 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAV 226 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 467999999999999887543
No 253
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=45.54 E-value=8.9 Score=40.46 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=17.8
Q ss_pred CCcEEEEccCCCChHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLp 517 (1689)
+.++++++|+|||||.++-.-
T Consensus 5 ~~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 578999999999999887543
No 254
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=45.42 E-value=27 Score=32.42 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=35.8
Q ss_pred cccCCCCCHHHHHHHHhcCC-CchhhccCChhhhhhhhcCC
Q psy14582 1364 LRQFRKIPEEIIKKIEKKNF-PWERLYDLGPNEIGELIRVP 1403 (1689)
Q Consensus 1364 LrQ~~~i~~~~i~~~~~~~~-~~~~l~dl~~~el~~ll~~~ 1403 (1689)
++-.|+++++++++|+++|+ +..++...++.|+.++...+
T Consensus 6 ~~~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls 46 (83)
T 2kz3_A 6 VGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLS 46 (83)
T ss_dssp TTSSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCC
T ss_pred cccCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCC
Confidence 33458899999999999999 89999999999999998876
No 255
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=45.15 E-value=9.1 Score=44.69 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=19.8
Q ss_pred HHHhcCCcEEEEccCCCChHHHHH
Q psy14582 492 SALESDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 492 ~al~~g~nvLv~APTGSGKT~a~l 515 (1689)
.++..++++++++|+|+|||..+-
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 344468999999999999998764
No 256
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=43.91 E-value=16 Score=39.59 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=14.9
Q ss_pred cEEEEccCCCChHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~l 515 (1689)
.+++++|+|+|||..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999997654
No 257
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=43.69 E-value=8.6 Score=45.06 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=21.1
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHh
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIG 523 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~ 523 (1689)
.+.++++++|+|+|||.+.-..+ +.+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~-~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVM-DELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHH-HHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH-HHHH
Confidence 46789999999999998875543 5554
No 258
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=43.52 E-value=70 Score=39.10 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=27.4
Q ss_pred CcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEc--cchhhhHhhh
Q psy14582 498 ENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVA--PMRSLVQEMV 553 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~la--PtreLa~Qi~ 553 (1689)
.-+++++|+|+|||..+.--+ ..+.. .+.++++++ |.|+-+.++.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~~----------~G~kVllv~~D~~R~aa~eqL 147 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQK----------RGYKVGVVCSDTWRPGAYHQL 147 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHT----------TTCCEEEEECCCSSTHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHHH----------CCCeEEEEeCCCcchhHHHHH
Confidence 457899999999998865444 22332 234566654 4555444443
No 259
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=43.46 E-value=36 Score=42.28 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=50.0
Q ss_pred cccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEcc--------------chhHHHHH----hhc
Q psy14582 750 AETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP--------------MRSLVQEM----VGN 811 (1689)
Q Consensus 750 ~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP--------------~r~L~~q~----v~l 811 (1689)
.....++.+.-|+|+|||...-. +...+ +...+++.. .+.+..+. ..+
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAra-ia~~~-------------~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~i 300 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARA-VANET-------------GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHH-HHHHC-------------SSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEE
T ss_pred CCCCCcEEEECcCCCCHHHHHHH-HHHHh-------------CCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcE
Confidence 34455688889999999987642 11111 223333321 01111111 238
Q ss_pred cccCCceeecCCc----hhHHHHHHHHHHHHHHhccccceEEEEecC
Q psy14582 812 FGKDEIHLLHDER----GPVLEALIARTIRNIEATQEDVRLVGLSAT 854 (1689)
Q Consensus 812 iIiDEiHll~d~r----G~~lE~iv~r~~~~~~~~~~~~riV~lSAT 854 (1689)
+++||+|.+...+ +.....++..+++.+........++.+.||
T Consensus 301 LfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaT 347 (489)
T 3hu3_A 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (489)
T ss_dssp EEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEE
T ss_pred EEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEec
Confidence 9999999886533 444445555566656554455555555555
No 260
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=43.39 E-value=10 Score=40.11 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=17.4
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.|+-+++++|+|||||-..-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 577889999999999986543
No 261
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=43.29 E-value=25 Score=43.92 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=29.5
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccch
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR 546 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtr 546 (1689)
.+.++++.++||||||.+.-.-++..+..+ .....+.+.+=|..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~-------~p~~v~l~liDpK~ 209 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKA-------QPEDVRFIMIDPKM 209 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTC-------CTTTEEEEEECCSS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhC-------CCceEEEEEECCch
Confidence 578999999999999987655555545432 12345666555553
No 262
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=43.07 E-value=9.6 Score=44.08 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.0
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.++.+++++|+|+|||..+-.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHH
Confidence 467899999999999988753
No 263
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=42.93 E-value=8.3 Score=43.71 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
..++|+++|+|+|||..+-.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 46899999999999988754
No 264
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=42.84 E-value=10 Score=42.42 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
..+++++++|+|+|||..+-.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~ 58 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKA 58 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 457899999999999987643
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=42.63 E-value=11 Score=40.66 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=18.8
Q ss_pred hcCCcEEEEccCCCChHHHHHHH
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLp 517 (1689)
..++.+++++|+|||||.++-.-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHH
Confidence 36789999999999999887544
No 266
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=42.42 E-value=10 Score=43.17 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=17.8
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.++++++++|+|+|||..+-.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~ 70 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKA 70 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHH
Confidence 567899999999999987643
No 267
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=42.36 E-value=11 Score=42.79 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=18.3
Q ss_pred HhcCCcEEEEccCCCChHHHHH
Q psy14582 494 LESDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~l 515 (1689)
+..|+.+++++|||||||-..-
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHH
Confidence 4578889999999999997643
No 268
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=42.17 E-value=10 Score=43.49 Aligned_cols=20 Identities=45% Similarity=0.645 Sum_probs=17.4
Q ss_pred cCCcEEEEccCCCChHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~l 515 (1689)
.++.+++++|+|+|||..+-
T Consensus 53 ~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 36789999999999998764
No 269
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=42.15 E-value=8.4 Score=45.91 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.1
Q ss_pred HhcCCcEEEEccCCCChHHHH
Q psy14582 494 LESDENLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~ 514 (1689)
...+..+++++|||||||-..
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHH
Confidence 345678999999999999654
No 270
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=41.95 E-value=9.9 Score=44.97 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCChHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLp 517 (1689)
++++|+++|+|+|||..+-.-
T Consensus 70 ~~~vLl~GppGtGKT~la~~l 90 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGM 90 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 458999999999999877543
No 271
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=41.68 E-value=12 Score=40.81 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.|+-+++++|||||||..++-
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALE 53 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 356689999999999866543
No 272
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=41.24 E-value=10 Score=42.65 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=15.0
Q ss_pred cEEEEccCCCChHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lL 516 (1689)
.+++++|||||||..+..
T Consensus 3 li~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 468999999999987643
No 273
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=41.22 E-value=46 Score=34.30 Aligned_cols=21 Identities=24% Similarity=0.113 Sum_probs=15.9
Q ss_pred ccccceeEeecCCCchHHHHH
Q psy14582 751 ETILPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 751 e~~~pv~~~aPTGsGKT~~~l 771 (1689)
....++.+.-|.|+|||....
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHH
Confidence 344567888999999998653
No 274
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=41.04 E-value=14 Score=40.13 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCCChHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~l 515 (1689)
.|+-+++++|+|||||-..-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 56778999999999998654
No 275
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=40.94 E-value=12 Score=44.74 Aligned_cols=20 Identities=50% Similarity=0.715 Sum_probs=17.4
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
+.++++++|+|+|||..+-.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 57899999999999988754
No 276
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=40.87 E-value=42 Score=36.31 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=34.6
Q ss_pred cccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchh------HHH--HHhhccccCCceeecCC
Q psy14582 752 TILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS------LVQ--EMVGNFGKDEIHLLHDE 823 (1689)
Q Consensus 752 ~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~------L~~--q~v~liIiDEiHll~d~ 823 (1689)
...++.+.-|+|+|||..... +...+... +..++++..... ... ....++++||+|.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~-l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~~~~~ 119 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHA-ACARANEL----------ERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGH 119 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHH-HHHHHHHT----------TCCEEEEEGGGGGGSCGGGGTTGGGSSEEEEETGGGGTTC
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHHHc----------CCeEEEEEHHHHHHHHHHHHHhccCCCEEEEeccccccCC
Confidence 456788889999999986532 22222211 233444433110 000 12578999999988654
No 277
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=40.66 E-value=12 Score=40.24 Aligned_cols=17 Identities=24% Similarity=0.710 Sum_probs=14.7
Q ss_pred CcEEEEccCCCChHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~ 514 (1689)
+-++++||+|||||-..
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999754
No 278
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=40.04 E-value=22 Score=41.38 Aligned_cols=40 Identities=18% Similarity=0.093 Sum_probs=27.2
Q ss_pred hcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccc
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPt 545 (1689)
..|.-++++|++|+|||..++--+.+... .+.+++|++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~-----------~g~~vl~~slE 105 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSD-----------NDDVVNLHSLE 105 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHT-----------TTCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH-----------cCCeEEEEECC
Confidence 36778899999999999765544444332 12478887643
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=39.82 E-value=14 Score=38.91 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.+.+++++++.|||||.++-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 567899999999999987754
No 280
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=39.68 E-value=22 Score=43.20 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=21.0
Q ss_pred HHHHHHHHHHH-hcCCcEEEEccCCCChHHHH
Q psy14582 484 RIQSRLCKSAL-ESDENLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 484 piQ~~aip~al-~~g~nvLv~APTGSGKT~a~ 514 (1689)
+-+..++..++ ..|..+++++|||||||-..
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 33444554444 34667899999999999653
No 281
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=39.58 E-value=13 Score=38.86 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
+..++++++.|||||-++-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 56789999999999988744
No 282
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.26 E-value=40 Score=38.52 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=16.6
Q ss_pred cEEEEccCCCChHHHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lLpi 518 (1689)
++++++|.|+|||..+..-.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~ 63 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLA 63 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 59999999999998765443
No 283
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=39.11 E-value=52 Score=39.31 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=15.2
Q ss_pred ccceeEeecCCCchHHHHH
Q psy14582 753 ILPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~l 771 (1689)
..++.+.-|+|+|||....
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3467888999999998764
No 284
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=39.06 E-value=13 Score=43.47 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.+.++|+++|+|+|||..+-.
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~ 64 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRA 64 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHH
T ss_pred CCceEEEECCCCccHHHHHHH
Confidence 457899999999999987643
No 285
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=39.02 E-value=14 Score=43.28 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=16.5
Q ss_pred CcEEEEccCCCChHHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLp 517 (1689)
..+++++|||||||..+...
T Consensus 6 ~~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999877544
No 286
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=39.01 E-value=12 Score=41.79 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
.+.+++++|+|+|||..+-.
T Consensus 45 ~~~vll~G~~GtGKT~la~~ 64 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKA 64 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 56799999999999987643
No 287
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.95 E-value=45 Score=40.24 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=46.2
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccc----------hhHHHHH--------hhcccc
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM----------RSLVQEM--------VGNFGK 814 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~----------r~L~~q~--------v~liIi 814 (1689)
..-+.+.-|.|+|||+.+-. +...+ +...+.+... ..++++. -.+|+|
T Consensus 182 prGvLL~GPPGTGKTllAkA-iA~e~-------------~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFi 247 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARA-VAHHT-------------DCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFM 247 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHH-HHHHH-------------TCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHH-HHHhh-------------CCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEee
Confidence 33477888999999987642 22222 2223333321 1112221 346778
Q ss_pred CCceeecCCch-------hHHHHHHHHHHHHHHhccccceEEEEecC
Q psy14582 815 DEIHLLHDERG-------PVLEALIARTIRNIEATQEDVRLVGLSAT 854 (1689)
Q Consensus 815 DEiHll~d~rG-------~~lE~iv~r~~~~~~~~~~~~riV~lSAT 854 (1689)
||++.+...|+ .....++..++..+......-.++.+-||
T Consensus 248 DEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaAT 294 (405)
T 4b4t_J 248 DEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMAT 294 (405)
T ss_dssp ESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred ecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEecc
Confidence 99998865321 23344455555555544444455555555
No 288
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=38.61 E-value=23 Score=37.73 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=11.0
Q ss_pred hhccccCCceeec
Q psy14582 809 VGNFGKDEIHLLH 821 (1689)
Q Consensus 809 v~liIiDEiHll~ 821 (1689)
.+++++||+|.+.
T Consensus 77 ~dvviIDE~Q~~~ 89 (184)
T 2orw_A 77 TRGVFIDEVQFFN 89 (184)
T ss_dssp EEEEEECCGGGSC
T ss_pred CCEEEEECcccCC
Confidence 5789999999874
No 289
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=38.50 E-value=12 Score=43.52 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCChHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~l 515 (1689)
.+++|+++|+|+|||..+-
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4679999999999998774
No 290
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=38.42 E-value=38 Score=40.06 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=47.9
Q ss_pred ccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhhcCCHHHHHHHHHHHh
Q psy14582 1507 YLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCN 1560 (1689)
Q Consensus 1507 ~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll~l~~~q~~~v~~~~~ 1560 (1689)
+|.+||.+++..++++++.++.|+.+++..+..+..++.++++.+..++.+.+.
T Consensus 36 ~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~ 89 (349)
T 1pzn_A 36 SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAAR 89 (349)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh
Confidence 688899999999999999999999999999999888888898888777776664
No 291
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=38.41 E-value=13 Score=43.96 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=15.7
Q ss_pred CcEEEEccCCCChHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lL 516 (1689)
.-+++++|||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHH
Confidence 3578999999999987744
No 292
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=38.34 E-value=12 Score=45.07 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=15.3
Q ss_pred cEEEEccCCCChHHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lLp 517 (1689)
-+++++|||||||..+.--
T Consensus 4 ~i~i~GptgsGKttla~~L 22 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQL 22 (409)
T ss_dssp EEEEEECSSSSHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHH
Confidence 4689999999999876443
No 293
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=38.07 E-value=13 Score=38.26 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=15.5
Q ss_pred cEEEEccCCCChHHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lLp 517 (1689)
.+++++|.|||||..+-.-
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999876533
No 294
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=38.04 E-value=12 Score=43.17 Aligned_cols=21 Identities=48% Similarity=0.681 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
...++++++|+|+|||..+-.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~ 57 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHV 57 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHH
Confidence 347899999999999987644
No 295
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=38.04 E-value=1e+02 Score=35.41 Aligned_cols=29 Identities=31% Similarity=0.355 Sum_probs=18.4
Q ss_pred HHHHHHhcCC--c-EEEEccCCCChHHHHHHH
Q psy14582 489 LCKSALESDE--N-LLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 489 aip~al~~g~--n-vLv~APTGSGKT~a~lLp 517 (1689)
.+..++..++ + +|+.+|+|+|||..+..-
T Consensus 37 ~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~l 68 (324)
T 3u61_B 37 TFKSITSKGKIPHIILHSPSPGTGKTTVAKAL 68 (324)
T ss_dssp HHHHHHHTTCCCSEEEECSSTTSSHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHH
Confidence 3334444433 4 467777999999887543
No 296
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=37.68 E-value=19 Score=42.82 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=17.9
Q ss_pred HHHHHhcCCc--EEEEccCCCChHHHH
Q psy14582 490 CKSALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 490 ip~al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
+..++ .|.| ++..++||||||..-
T Consensus 97 v~~~l-~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQAL-DGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHh-CCCCEEEEEeCCCCCCccEEe
Confidence 33455 6777 478889999999764
No 297
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=37.56 E-value=19 Score=42.83 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=17.4
Q ss_pred HHhcCCc--EEEEccCCCChHHHH
Q psy14582 493 ALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 493 al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
++..|.| ++..++||||||..-
T Consensus 79 ~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 79 LYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHCCEEEEEEECCTTSSHHHHH
T ss_pred hccCCceeEEEeeCCCCCCCCEEE
Confidence 4545777 589999999999765
No 298
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=37.36 E-value=23 Score=38.44 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=18.4
Q ss_pred cCCcEEEEccCCCChHHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpi 518 (1689)
.|+-+++.+|+|||||..+..-+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 57889999999999997654433
No 299
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=37.06 E-value=15 Score=42.80 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
+.++++++|+|+|||..+-.
T Consensus 37 ~~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 46899999999999987654
No 300
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=36.98 E-value=15 Score=42.92 Aligned_cols=19 Identities=37% Similarity=0.767 Sum_probs=16.7
Q ss_pred CcEEEEccCCCChHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lL 516 (1689)
.++++++|+|+|||..+-.
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 6899999999999987744
No 301
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=36.80 E-value=14 Score=43.31 Aligned_cols=19 Identities=37% Similarity=0.580 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCChHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~l 515 (1689)
.+.+|+++|+|+|||..+-
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3689999999999998764
No 302
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=36.47 E-value=16 Score=39.37 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=18.1
Q ss_pred hcCCcEEEEccCCCChHHHHHH
Q psy14582 495 ESDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lL 516 (1689)
..|.-+++++|+|||||-.+-.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHH
Confidence 3678899999999999976543
No 303
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=36.40 E-value=17 Score=53.99 Aligned_cols=27 Identities=33% Similarity=0.738 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCcEEEEccCCCChHHHH
Q psy14582 488 RLCKSALESDENLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 488 ~aip~al~~g~nvLv~APTGSGKT~a~ 514 (1689)
..+..++..++++|+++|||+|||..+
T Consensus 1258 ~ll~~~l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1258 KIFYDLLNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHHHHHHTCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCCHHHHH
Confidence 455566778999999999999999876
No 304
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=36.32 E-value=20 Score=42.42 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=17.2
Q ss_pred HHHhcCCcE--EEEccCCCChHHHH
Q psy14582 492 SALESDENL--LLCAPTGAGKTNVA 514 (1689)
Q Consensus 492 ~al~~g~nv--Lv~APTGSGKT~a~ 514 (1689)
.++ .|.|. +..++||||||..-
T Consensus 89 ~~l-~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 89 KLL-EGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHH-HTCCEEEEEESSTTSSHHHHH
T ss_pred Hhh-CCCceEEEEecCCCCCCCeEE
Confidence 345 57774 78899999999874
No 305
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=36.07 E-value=17 Score=37.74 Aligned_cols=20 Identities=35% Similarity=0.723 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCCChHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~l 515 (1689)
.+..+.+++|.|||||-.+-
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 46789999999999998654
No 306
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=36.01 E-value=16 Score=38.81 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=17.8
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.+.+++++++.|||||.++-.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999987643
No 307
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=36.00 E-value=19 Score=38.75 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.|+-+.+++|+|||||-..-+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~ 23 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKK 23 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 577899999999999976543
No 308
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=35.97 E-value=15 Score=43.52 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
.+++|+++|+|+|||..+-.
T Consensus 84 ~~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 46899999999999988753
No 309
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.95 E-value=40 Score=41.08 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=17.4
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
.+.+|+.+|.|+|||+.+-.
T Consensus 215 prGvLLyGPPGTGKTllAkA 234 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARA 234 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHH
Confidence 57899999999999988644
No 310
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=35.80 E-value=14 Score=45.41 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCChHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLp 517 (1689)
++++|+++|+|+|||..+..-
T Consensus 63 ~~~iLl~GppGtGKT~la~al 83 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAI 83 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHH
Confidence 468999999999999888543
No 311
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=35.75 E-value=35 Score=41.78 Aligned_cols=20 Identities=45% Similarity=0.740 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
.+++|+++|+|+|||..+-.
T Consensus 50 ~~~iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARR 69 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 47899999999999987643
No 312
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=35.59 E-value=22 Score=41.64 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=17.7
Q ss_pred HHHHhcCCc--EEEEccCCCChHHHH
Q psy14582 491 KSALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 491 p~al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
..++ .|.| ++..++||||||..-
T Consensus 71 ~~~l-~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 71 KDVL-EGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHh-CCCeEEEEEECCCCCCCceEe
Confidence 3345 6777 578899999999875
No 313
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=35.45 E-value=34 Score=38.94 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=28.9
Q ss_pred HHHhccCCCCCCHHHHHHH-HHHHhcC---Cc-EEEEccCCCChHHHHHHH
Q psy14582 472 VQHAFEDFKTLNRIQSRLC-KSALESD---EN-LLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 472 ~~~~f~g~~~~tpiQ~~ai-p~al~~g---~n-vLv~APTGSGKT~a~lLp 517 (1689)
+.+.| .|...+|++...+ ...++.. +| +++++|.|+|||..+...
T Consensus 75 i~~~l-~~qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~al 124 (267)
T 1u0j_A 75 IYKIL-ELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAI 124 (267)
T ss_dssp HHHHH-HHTTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHH
T ss_pred HHHHH-HHcCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 44444 3444578886654 3334221 34 899999999999988743
No 314
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=35.37 E-value=39 Score=42.63 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=31.4
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccch
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR 546 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtr 546 (1689)
...++||.+.||||||.+.-.-++..+..+ .+...+.+++=|-.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~-------sP~ev~lilIDpKg 256 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKS-------TPSEARLIMIDPKM 256 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTC-------CTTTEEEEEECSSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhC-------CCcceEEEEeCCCh
Confidence 358999999999999988766666655433 12456777776664
No 315
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=35.28 E-value=20 Score=38.89 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=17.5
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.|+-+++++|+|+|||-..-.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~ 38 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNA 38 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHH
Confidence 678889999999999986543
No 316
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=34.99 E-value=32 Score=37.75 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=27.1
Q ss_pred CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchh
Q psy14582 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS 547 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtre 547 (1689)
|.=.++++|-|||||.+++=-+.+... .+.+++++-|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~-----------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF-----------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH-----------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH-----------CCCEEEEEEeccC
Confidence 333468999999999887666655443 3457888888763
No 317
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=34.83 E-value=20 Score=32.11 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=47.0
Q ss_pred cccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhhcCCHHHHHHHHHHHhcC
Q psy14582 1508 LKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRY 1562 (1689)
Q Consensus 1508 LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll~l~~~q~~~v~~~~~~~ 1562 (1689)
+++.+.++...++.+...|..|+.++...+.++--.+-++++....++..-++.+
T Consensus 8 f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~ 62 (70)
T 1u9l_A 8 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNA 62 (70)
T ss_dssp HHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999998888777789999998888777643
No 318
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=34.63 E-value=16 Score=43.39 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=18.2
Q ss_pred cCCcEEEEccCCCChHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLp 517 (1689)
..+++|+++|+|+|||..+-.-
T Consensus 116 ~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3678999999999999887543
No 319
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.61 E-value=22 Score=41.56 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=18.4
Q ss_pred HHhcC--CcEEEEccCCCChHHHHHH
Q psy14582 493 ALESD--ENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 493 al~~g--~nvLv~APTGSGKT~a~lL 516 (1689)
++..+ .++++++|+|+|||..+-.
T Consensus 52 ~l~~~~~~~~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 52 TLKSANLPHMLFYGPPGTGKTSTILA 77 (353)
T ss_dssp HTTCTTCCCEEEECSTTSSHHHHHHH
T ss_pred HHhcCCCCEEEEECCCCCCHHHHHHH
Confidence 34344 5699999999999987643
No 320
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=34.58 E-value=15 Score=43.45 Aligned_cols=22 Identities=50% Similarity=0.564 Sum_probs=18.2
Q ss_pred cCCcEEEEccCCCChHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLp 517 (1689)
.+.++++++|+|+|||..+-.-
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~ 64 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLV 64 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHH
Confidence 4678999999999999876443
No 321
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=34.48 E-value=59 Score=37.53 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=35.5
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchh---HHHH--------------HhhccccC
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS---LVQE--------------MVGNFGKD 815 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~---L~~q--------------~v~liIiD 815 (1689)
..|+.+.-|+|+|||..... +...+.. .+.+++|+..... +... ...++++|
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~~----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iD 105 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAKK----------RGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLD 105 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHHH----------TTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHH----------CCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEc
Confidence 35688889999999976532 2222211 1345666654221 1111 14689999
Q ss_pred CceeecCC
Q psy14582 816 EIHLLHDE 823 (1689)
Q Consensus 816 EiHll~d~ 823 (1689)
|+|.+...
T Consensus 106 Ei~~l~~~ 113 (324)
T 1l8q_A 106 DVQFLSGK 113 (324)
T ss_dssp CGGGGTTC
T ss_pred CcccccCC
Confidence 99998753
No 322
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=34.29 E-value=17 Score=38.85 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=17.9
Q ss_pred hcCCcEEEEccCCCChHHHHHH
Q psy14582 495 ESDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lL 516 (1689)
..|.-+.+++|+|||||-.+-+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3578889999999999976543
No 323
>2l7q_A Conserved protein found in conjugate transposon; NESG, structural genomics, PSI-biology; NMR {Bacteroides vulgatus}
Probab=34.25 E-value=1.6e+02 Score=29.06 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=21.1
Q ss_pred cccccCCCeEEEEEEEEecCCCCCccc
Q psy14582 1574 KDRISSGSSVNVVVNLDREDEVTGPVI 1600 (1689)
Q Consensus 1574 ~~~i~~g~~~~l~v~l~R~~~~~~~v~ 1600 (1689)
...|..|+.|.|..+|.|++.-....|
T Consensus 20 ~k~I~~GeTvEIR~~L~reG~f~~t~Y 46 (124)
T 2l7q_A 20 ADEIAGDETVEIRLEIKPSGNFIGTVY 46 (124)
T ss_dssp CSCCCSSEEEEEEEEEEECCCCSCCCC
T ss_pred ccccCCCCeEEEEEEEecCceecccEE
Confidence 467999999999999999865433333
No 324
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=34.23 E-value=17 Score=43.53 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=18.1
Q ss_pred HhcCCcEEEEccCCCChHHHHH
Q psy14582 494 LESDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~l 515 (1689)
+..|+.+++++|||||||-..-
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHH
Confidence 4468889999999999997643
No 325
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=34.19 E-value=26 Score=40.93 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=30.3
Q ss_pred hcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchh
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS 547 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtre 547 (1689)
..|.-+++++|+|||||..++--+........ . | ..+.+++|+.-...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~-~-g---g~~~~vlyi~~e~~ 152 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE-K-G---GLSGKAVYIDTEGT 152 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG-G-T---CCSCEEEEEESSSC
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccc-c-C---CCCCeEEEEECCCC
Confidence 36788999999999999877655544222110 0 0 01458899876543
No 326
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=34.08 E-value=15 Score=42.28 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=16.2
Q ss_pred CcEEEEccCCCChHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lL 516 (1689)
..+|+++|+|+|||..+-.
T Consensus 37 ~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp SEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5789999999999987654
No 327
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=33.97 E-value=68 Score=32.95 Aligned_cols=21 Identities=24% Similarity=0.101 Sum_probs=15.7
Q ss_pred ccccceeEeecCCCchHHHHH
Q psy14582 751 ETILPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 751 e~~~pv~~~aPTGsGKT~~~l 771 (1689)
....++.+.-|+|+|||....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHH
Confidence 334567888899999997654
No 328
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=33.94 E-value=24 Score=42.00 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=17.2
Q ss_pred HHHhcCCc--EEEEccCCCChHHHH
Q psy14582 492 SALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 492 ~al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
.++ .|.| ++..++||||||..-
T Consensus 79 ~~l-~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 79 DVL-AGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHh-CCCceEEEeecCCCCCCceEE
Confidence 345 6777 478899999999874
No 329
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.93 E-value=45 Score=40.67 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCChHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLp 517 (1689)
.+.+|+++|.|+|||..+-..
T Consensus 215 prGvLL~GPPGtGKTllAkAi 235 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAV 235 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 578999999999999987543
No 330
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=33.85 E-value=24 Score=42.16 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=16.9
Q ss_pred HHHhcCCcE--EEEccCCCChHHHH
Q psy14582 492 SALESDENL--LLCAPTGAGKTNVA 514 (1689)
Q Consensus 492 ~al~~g~nv--Lv~APTGSGKT~a~ 514 (1689)
.++ .|.|. +..++||||||..-
T Consensus 96 ~~l-~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 96 SVL-QGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHh-CCCeeeEEeecCCCCCCCEeE
Confidence 345 67774 77889999999764
No 331
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=33.84 E-value=25 Score=41.35 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=19.2
Q ss_pred HHHHHHhcCCc--EEEEccCCCChHHHH
Q psy14582 489 LCKSALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 489 aip~al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
++..++ .|.| ++..++||||||..-
T Consensus 72 lv~~~l-~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCI-DGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHh-CCCEEEEEeECCCCCCCcEEE
Confidence 455566 6887 478899999999775
No 332
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=33.82 E-value=65 Score=29.12 Aligned_cols=55 Identities=15% Similarity=0.292 Sum_probs=42.8
Q ss_pred ccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhhcCCHHHHHHHHHHHhcC
Q psy14582 1507 YLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRY 1562 (1689)
Q Consensus 1507 ~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll~l~~~q~~~v~~~~~~~ 1562 (1689)
|+-+| .++.....-+++.+|.|+.||+..+.++-.++=++..+-+++|...+..+
T Consensus 10 ~Ie~L-~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~~ 64 (73)
T 1z3e_B 10 TIEEL-DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEEL 64 (73)
T ss_dssp BGGGS-CCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred cHHHh-CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 34444 45555555567889999999999999887777779999999998888765
No 333
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=33.57 E-value=32 Score=42.18 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=28.5
Q ss_pred hcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccc
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPt 545 (1689)
..|.-++++|++|+|||..++--+.+.... +.+++|++.-
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~-----------g~~vl~fSlE 234 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN-----------DDVVNLHSLE 234 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT-----------TCEEEEECSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc-----------CCEEEEEECC
Confidence 367788999999999998776555554431 3478887643
No 334
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=33.50 E-value=16 Score=42.03 Aligned_cols=19 Identities=42% Similarity=0.665 Sum_probs=16.4
Q ss_pred CcEEEEccCCCChHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lL 516 (1689)
.++++++|+|+|||..+-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 4799999999999987753
No 335
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=33.49 E-value=25 Score=41.63 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=17.1
Q ss_pred HHHhcCCc--EEEEccCCCChHHHH
Q psy14582 492 SALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 492 ~al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
.++ .|.| ++..++||||||..-
T Consensus 84 ~~l-~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 84 AVL-EGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHh-CCCceeEEeecCCCCCCCEEe
Confidence 345 6777 478899999999874
No 336
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=33.44 E-value=10 Score=42.63 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCChHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLp 517 (1689)
.+.+++++|+|+|||..+-.-
T Consensus 44 ~~~vll~G~~GtGKT~la~~l 64 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAV 64 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHH
Confidence 567999999999999887543
No 337
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=33.42 E-value=16 Score=43.74 Aligned_cols=20 Identities=45% Similarity=0.620 Sum_probs=17.4
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
.+++|+++|+|+|||..+-.
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57999999999999987743
No 338
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=33.36 E-value=67 Score=37.18 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.0
Q ss_pred ceeEeecCCCchHHHHH
Q psy14582 755 PVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 755 pv~~~aPTGsGKT~~~l 771 (1689)
.+.+.-|+|+|||....
T Consensus 53 ~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAK 69 (322)
T ss_dssp EEEEECSSSSCHHHHHH
T ss_pred eEEEECCCCCcHHHHHH
Confidence 47788899999998764
No 339
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=33.31 E-value=32 Score=40.88 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=29.9
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhh
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL 548 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreL 548 (1689)
.|+-+++++|.|+|||..++--+..... .+.+++|+.....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~-----------~g~~vlyid~E~s~ 103 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR-----------EGKTCAFIDAEHAL 103 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH-----------TTCCEEEEESSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-----------CCCeEEEEeCCCCc
Confidence 6788999999999999888665544332 12368888765443
No 340
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=33.20 E-value=26 Score=41.49 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=17.4
Q ss_pred HHHHhcCCcE--EEEccCCCChHHHH
Q psy14582 491 KSALESDENL--LLCAPTGAGKTNVA 514 (1689)
Q Consensus 491 p~al~~g~nv--Lv~APTGSGKT~a~ 514 (1689)
..++ .|.|. +..++||||||..-
T Consensus 77 ~~~l-~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFF-EGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHH-hhcCeeEEEecccCCCceEee
Confidence 3345 67774 78889999999874
No 341
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=33.19 E-value=25 Score=41.88 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=17.8
Q ss_pred HHHHHhcCCc--EEEEccCCCChHHHH
Q psy14582 490 CKSALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 490 ip~al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
+..++ .|.| ++..++||||||..-
T Consensus 82 v~~~l-~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAF-EGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHh-cCCeeEEEEeCCCCCCCceEe
Confidence 33455 6777 478889999999764
No 342
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=32.87 E-value=26 Score=41.58 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=18.0
Q ss_pred HHHHHhcCCc--EEEEccCCCChHHHH
Q psy14582 490 CKSALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 490 ip~al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
+..++ .|.| ++..++||||||..-
T Consensus 70 v~~~l-~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAI-QGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHH-cCCccceeeecCCCCCCCeEE
Confidence 33445 6777 478899999999875
No 343
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=32.78 E-value=26 Score=41.67 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=18.7
Q ss_pred HHHHHHhcCCcE--EEEccCCCChHHHH
Q psy14582 489 LCKSALESDENL--LLCAPTGAGKTNVA 514 (1689)
Q Consensus 489 aip~al~~g~nv--Lv~APTGSGKT~a~ 514 (1689)
++..++ .|.|. +..++||||||..-
T Consensus 84 lv~~~l-~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAF-DGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHH-TTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHh-CCceeEEEeeCCCCCCCceEE
Confidence 334455 68875 78889999999885
No 344
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=32.74 E-value=26 Score=41.70 Aligned_cols=24 Identities=38% Similarity=0.374 Sum_probs=17.9
Q ss_pred HHHHHhcCCcE--EEEccCCCChHHHH
Q psy14582 490 CKSALESDENL--LLCAPTGAGKTNVA 514 (1689)
Q Consensus 490 ip~al~~g~nv--Lv~APTGSGKT~a~ 514 (1689)
+..++ .|.|. +..++||||||..-
T Consensus 96 v~~~l-~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQAL-DGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHh-CCCceEEEEECCCCCCCceEe
Confidence 33445 68875 77889999999774
No 345
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=32.65 E-value=47 Score=35.48 Aligned_cols=107 Identities=11% Similarity=0.130 Sum_probs=53.1
Q ss_pred EEEEecc-----ccccCCCeEEEEEEEEecCCCCCccccCCCCCCCcccEEEEEEeCCCCeEEEE-Ee-eccCcceEEEE
Q psy14582 1568 SYEVLNK-----DRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSI-KR-LTLQQKAKIKL 1640 (1689)
Q Consensus 1568 ~~~v~~~-----~~i~~g~~~~l~v~l~R~~~~~~~v~aP~fP~~K~e~Wwvvvgd~~~~~l~~i-kr-v~~~~~~~~~l 1640 (1689)
.+.+.++ +.+..|+.++|.|+++-..+...++.+ |--....|-.|+-.+..... ..+ .. +.-+....+.+
T Consensus 52 ~v~l~d~~G~~~~~~~~Ge~v~l~i~~~~~~~i~~~v~G--~~Ik~~~G~~I~g~nT~~~~-~~~~~~~~~~G~~~~v~f 128 (188)
T 2r5o_A 52 DYHIQSAGVDFPPSLTGNQQTDFLMKVVFEYDFDCVVPG--ILIKTLDGLFLYGTNSFLAS-EGRENISVSRGDVRVFKF 128 (188)
T ss_dssp EEEEEETTEESCSSEETTCEEEEEEEEEESSCEEEEEEE--EEEEETTCCEEEEEEHHHHT-TTCCCEEECTTCEEEEEE
T ss_pred EEEEEECCCCEeeEEeCCCEEEEEEEEEECCcCCccEEE--EEEECCCCCEEEecCccccc-ccccccccCCCCEEEEEE
Confidence 4555543 358999999999999764321112211 11122223333322210000 001 11 11122235667
Q ss_pred EeeCC-CCceEEEEEEEEcCC-CCC---CCceE-EEEEEeecC
Q psy14582 1641 DFVAP-NPGHHSYALYFMSDA-YLG---CDQEY-KFSIDVSEY 1677 (1689)
Q Consensus 1641 ~f~~p-~~G~~~~~l~~~sDs-Y~G---~D~e~-~~~l~V~~~ 1677 (1689)
.|..| .||.|.+++.+.+.. +-+ .|..+ .+.++|.+.
T Consensus 129 ~f~l~L~~G~Y~lsv~i~~~~~~~~~~~~d~~~da~~F~V~~~ 171 (188)
T 2r5o_A 129 SLPVDLNSGDYLLSFGISAGNPQTDMTPLDRRYDSIILHVTKS 171 (188)
T ss_dssp EEECCBCSEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEECS
T ss_pred EEecccCCCeEEEEEEEecCCcCCCcEEEEEEccEEEEEEecC
Confidence 77777 689999999998765 211 23333 335777543
No 346
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.54 E-value=56 Score=40.08 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=18.2
Q ss_pred cCCcEEEEccCCCChHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLp 517 (1689)
..+.+|+++|.|+|||+.+-..
T Consensus 242 pprGILLyGPPGTGKTlLAkAi 263 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAV 263 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHH
Confidence 4678999999999999876433
No 347
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=32.51 E-value=24 Score=42.77 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=19.5
Q ss_pred HHHHHHhcCCcE--EEEccCCCChHHHH
Q psy14582 489 LCKSALESDENL--LLCAPTGAGKTNVA 514 (1689)
Q Consensus 489 aip~al~~g~nv--Lv~APTGSGKT~a~ 514 (1689)
++..++ .|.|. +..++||||||..-
T Consensus 130 lv~~~l-~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSAL-DGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHH-CCCceEEEEecCCCCCCeeEe
Confidence 555566 68874 78889999999875
No 348
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=32.50 E-value=16 Score=38.63 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=17.5
Q ss_pred hcCCcEEEEccCCCChHHHHH
Q psy14582 495 ESDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~l 515 (1689)
..|+.+++++|.|||||-.+-
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 357789999999999997653
No 349
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=32.45 E-value=25 Score=41.82 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=16.6
Q ss_pred HHhcCCc--EEEEccCCCChHHHH
Q psy14582 493 ALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 493 al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
++ .|.| ++..++||||||..-
T Consensus 76 ~l-~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 76 IL-NGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HT-TTCCEEEEEECSTTSSHHHHH
T ss_pred Hh-CCCcceEEEECCCCCCcceEe
Confidence 44 6777 578899999999874
No 350
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=32.41 E-value=22 Score=42.38 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=19.0
Q ss_pred HHHHHHhcCCcE--EEEccCCCChHHHH
Q psy14582 489 LCKSALESDENL--LLCAPTGAGKTNVA 514 (1689)
Q Consensus 489 aip~al~~g~nv--Lv~APTGSGKT~a~ 514 (1689)
++..++ .|.|. +..++||||||..-
T Consensus 71 lv~~~l-~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAV-DGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHH-TTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhh-cCCceEEEEECCCCCCCeEee
Confidence 445556 68874 67889999999875
No 351
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=32.32 E-value=19 Score=37.06 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.2
Q ss_pred cEEEEccCCCChHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~l 515 (1689)
-.++++|+|||||.+.-
T Consensus 25 ~~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLD 41 (149)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 45899999999999843
No 352
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=32.29 E-value=25 Score=41.80 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=17.5
Q ss_pred HHHHhcCCc--EEEEccCCCChHHHH
Q psy14582 491 KSALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 491 p~al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
..++ .|.| ++..++||||||..-
T Consensus 99 ~~~l-~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFL-NGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHT-TTCCEEEEEECCTTSSHHHHH
T ss_pred HHHh-CCCceEEEEeCCCCCCceeee
Confidence 3345 6777 478889999999875
No 353
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=32.10 E-value=25 Score=41.83 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=17.7
Q ss_pred HHHHHhcCCcE--EEEccCCCChHHHH
Q psy14582 490 CKSALESDENL--LLCAPTGAGKTNVA 514 (1689)
Q Consensus 490 ip~al~~g~nv--Lv~APTGSGKT~a~ 514 (1689)
+..++ .|.|. +..++||||||..-
T Consensus 81 v~~~l-~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVI-MGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHH-TTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHh-CCCceEEEEeCCCCCCCceEE
Confidence 33455 67774 78889999999754
No 354
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.05 E-value=27 Score=42.23 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=19.7
Q ss_pred HHHHHHhcCCcE--EEEccCCCChHHHH
Q psy14582 489 LCKSALESDENL--LLCAPTGAGKTNVA 514 (1689)
Q Consensus 489 aip~al~~g~nv--Lv~APTGSGKT~a~ 514 (1689)
++..++ .|.|+ +..++||||||..-
T Consensus 132 lv~~~l-~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSL-DGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHH-TTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHh-CCcceEEEEECCCCCCCceEe
Confidence 555566 68885 77889999999886
No 355
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=31.95 E-value=20 Score=38.30 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=17.3
Q ss_pred hcCCcEEEEccCCCChHHHHH
Q psy14582 495 ESDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~l 515 (1689)
..|+-+.+.+|+|||||-..-
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHH
Confidence 357788999999999997653
No 356
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=31.75 E-value=36 Score=41.58 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
..++++++|+|+|||..+-.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~a 149 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS 149 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 36899999999999987654
No 357
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=31.70 E-value=26 Score=41.92 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=16.7
Q ss_pred HHHhcCCc--EEEEccCCCChHHHH
Q psy14582 492 SALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 492 ~al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
.++ .|.| ++..++||||||..-
T Consensus 95 ~~l-~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 95 EVL-NGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHH-HTCCEEEEEECSTTSSHHHHH
T ss_pred HHh-CCceEEEEeecCCCCCcceec
Confidence 345 5777 478889999999653
No 358
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=31.69 E-value=1e+02 Score=35.88 Aligned_cols=43 Identities=7% Similarity=0.017 Sum_probs=26.1
Q ss_pred ccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHH
Q psy14582 811 NFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYK 859 (1689)
Q Consensus 811 liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~ 859 (1689)
++++||+|.+. .. .++ ..+.+.......++-+|+.++|+.+..
T Consensus 135 ii~lDE~d~l~-~q-~~L----~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 135 LILIQNPENLL-SE-KIL----QYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp EEEEECCSSSC-CT-HHH----HHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred EEEEecHHHhh-cc-hHH----HHHHhcccccCCcEEEEEEecCcccch
Confidence 77899999998 22 222 222222223344677889999987543
No 359
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=31.65 E-value=26 Score=42.00 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=17.7
Q ss_pred HHHHHhcCCc--EEEEccCCCChHHHH
Q psy14582 490 CKSALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 490 ip~al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
+..++ .|.| ++..++||||||..-
T Consensus 127 v~~~l-~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIF-EGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHH-TTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHh-cCCceEEEEecCCCCCCCeEe
Confidence 33455 6777 578889999999774
No 360
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=31.61 E-value=1e+02 Score=37.92 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=14.1
Q ss_pred cceeEeecCCCchHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~l 771 (1689)
.++.+.=|+|+|||...-
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 347778899999998754
No 361
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=31.55 E-value=28 Score=42.06 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=17.2
Q ss_pred HHHHhcCCc--EEEEccCCCChHHHH
Q psy14582 491 KSALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 491 p~al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
..++ .|.| ++..++||||||..-
T Consensus 148 ~~~l-~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 148 QTIF-EGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHH-TTCEEEEEEEESTTSSHHHHH
T ss_pred HHHh-cCCceeEEeecCCCCCCCeEe
Confidence 3345 6777 477889999999764
No 362
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.50 E-value=41 Score=40.90 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=17.7
Q ss_pred CCcEEEEccCCCChHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLp 517 (1689)
.+.+|+.+|.|+|||+.+-..
T Consensus 216 prGvLLyGPPGTGKTlLAkAi 236 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAV 236 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHH
Confidence 578999999999999977443
No 363
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=31.26 E-value=22 Score=37.70 Aligned_cols=17 Identities=24% Similarity=0.710 Sum_probs=14.3
Q ss_pred CcEEEEccCCCChHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~ 514 (1689)
+-+.+++|+|||||-..
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999754
No 364
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=31.01 E-value=1.2e+02 Score=33.37 Aligned_cols=18 Identities=39% Similarity=0.337 Sum_probs=14.0
Q ss_pred cceeEeecCCCchHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~l 771 (1689)
.++.+.-|+|+|||...-
T Consensus 46 ~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 357778899999997653
No 365
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.87 E-value=57 Score=30.84 Aligned_cols=57 Identities=16% Similarity=0.310 Sum_probs=46.1
Q ss_pred HHHHHHHHhhhcCChhhHHHHHHHHHHHHhcCCChhHHHHHHHHhhCCCchHHHHHHHh
Q psy14582 268 AYWLQRRLSKIYDDAMVSQAKAGEVLNILKSAGDDRDAENQLVLLLGYDCFDFIKMLKK 326 (1689)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 326 (1689)
.-|+.++|.++.+..+ ..+.+-|++.|.+..|.++++.+|...|+-+.-.|+..|-+
T Consensus 19 kpWI~kkv~e~LG~eD--~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~~a~~Fv~eLW~ 75 (92)
T 1x4q_A 19 KPWIEKTVKRVLGFSE--PTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKLFE 75 (92)
T ss_dssp HHHHHHHHHHHHSSCC--HHHHHHHHHHHHTTCCHHHHHHHHTTTTGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4699999999988322 23578888888888899999999999998877788887755
No 366
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=30.75 E-value=31 Score=40.75 Aligned_cols=20 Identities=35% Similarity=0.310 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
++++++++|+|+|||..+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 46799999999999987643
No 367
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=30.71 E-value=69 Score=46.30 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=36.8
Q ss_pred HHHHHh-----cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhh
Q psy14582 490 CKSALE-----SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 552 (1689)
Q Consensus 490 ip~al~-----~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi 552 (1689)
+..++. .++++++++|+|+|||..+.-.+..... .+.+++|+...-++....
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~-----------~G~~v~Fi~~e~~~~~l~ 1471 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-----------EGKTCAFIDAEHALDPIY 1471 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-----------TTCCEEEECTTSCCCHHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-----------cCCcEEEEEcccccCHHH
Confidence 555554 6899999999999999988766654332 345799988765544333
No 368
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=30.32 E-value=19 Score=42.97 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=15.2
Q ss_pred CcEEEEccCCCChHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lL 516 (1689)
.-.++++|||||||.+.-.
T Consensus 26 gl~vi~G~NGaGKT~ileA 44 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEA 44 (371)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3458999999999998543
No 369
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=30.29 E-value=33 Score=41.96 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=26.4
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
.|.-++++|++|+|||..++--+.+.... .+.+++|++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~----------~g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK----------EGVGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT----------TCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCeEEEEEC
Confidence 67788999999999997665544443321 1235777755
No 370
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=30.12 E-value=35 Score=39.89 Aligned_cols=20 Identities=40% Similarity=0.743 Sum_probs=17.0
Q ss_pred CcEEEEccCCCChHHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLp 517 (1689)
+.+++++|+|+|||..+-+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~i 71 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHII 71 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 68999999999999876543
No 371
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=30.08 E-value=51 Score=35.60 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=11.2
Q ss_pred hhccccCCceee
Q psy14582 809 VGNFGKDEIHLL 820 (1689)
Q Consensus 809 v~liIiDEiHll 820 (1689)
+++|+|||+|.+
T Consensus 92 ~DvIlIDEaQFf 103 (195)
T 1w4r_A 92 VAVIGIDEGQFF 103 (195)
T ss_dssp CSEEEESSGGGC
T ss_pred CCEEEEEchhhh
Confidence 789999999998
No 372
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=29.94 E-value=21 Score=39.75 Aligned_cols=19 Identities=42% Similarity=0.721 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCChHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~l 515 (1689)
.+.+++++|+|+|||..+-
T Consensus 49 ~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3459999999999997654
No 373
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=29.86 E-value=29 Score=44.30 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=22.3
Q ss_pred HHHHHHhcCCcEEEEccCCCChHHHHHH
Q psy14582 489 LCKSALESDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 489 aip~al~~g~nvLv~APTGSGKT~a~lL 516 (1689)
.+..++..|+.+++.+|+|+|||..+-.
T Consensus 52 ~l~~~i~~g~~vll~Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 52 VIKTAANQKRHVLLIGEPGTGKSMLGQA 79 (604)
T ss_dssp HHHHHHHTTCCEEEECCTTSSHHHHHHH
T ss_pred hccccccCCCEEEEEeCCCCCHHHHHHH
Confidence 3444566899999999999999987743
No 374
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=29.84 E-value=39 Score=39.99 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=27.9
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccc
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPt 545 (1689)
.|+-+++.+|.|||||..++-.+..... .+.+++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~-----------~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA-----------AGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH-----------TTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-----------CCCeEEEEECC
Confidence 6788999999999999877665544332 12367887643
No 375
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=29.83 E-value=83 Score=29.37 Aligned_cols=55 Identities=9% Similarity=0.132 Sum_probs=44.0
Q ss_pred cccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhhcCCHHHHHHHHHHHhcCC
Q psy14582 1508 LKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYP 1563 (1689)
Q Consensus 1508 LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll~l~~~q~~~v~~~~~~~P 1563 (1689)
+-+| .++.....-+++.+|.||.||+..+.++-.++=++..+-+++|...+..+-
T Consensus 14 I~~L-~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~G 68 (86)
T 3k4g_A 14 VDDL-ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASRG 68 (86)
T ss_dssp GGGG-CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTTT
T ss_pred HHHh-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHHcC
Confidence 3344 455666666678899999999999998877777799999999999988763
No 376
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.77 E-value=88 Score=38.11 Aligned_cols=18 Identities=33% Similarity=0.278 Sum_probs=14.4
Q ss_pred cceeEeecCCCchHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~l 771 (1689)
.-+.+.=|.|+|||+.+-
T Consensus 216 rGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeeEEECcCCCCHHHHHH
Confidence 347788899999998754
No 377
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=29.61 E-value=75 Score=32.40 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=33.0
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccch----hHHHHHhhccccCCceeecC
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR----SLVQEMVGNFGKDEIHLLHD 822 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r----~L~~q~v~liIiDEiHll~d 822 (1689)
.-++.+.-|+|+|||.....-. ..+.. .+.+++|+.... ++.. ..+++++||++.+.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~-~~~~~----------~g~~~~~~~~~~~~~~~~~~-~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWV-AQALE----------AGKNAAYIDAASMPLTDAAF-EAEYLAVDQVEKLGN 97 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHH-HHHHT----------TTCCEEEEETTTSCCCGGGG-GCSEEEEESTTCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHH-HHHHh----------cCCcEEEEcHHHhhHHHHHh-CCCEEEEeCccccCh
Confidence 3456677899999997643211 11111 133455553321 2222 378999999998654
No 378
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=29.52 E-value=23 Score=37.97 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.8
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.|+.+++++|.|||||-.+-+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 578899999999999977643
No 379
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=29.35 E-value=41 Score=38.75 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCCChHHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpi 518 (1689)
.++.+++++|+|+|||..+..-.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46788999999999997655433
No 380
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.33 E-value=55 Score=39.95 Aligned_cols=18 Identities=39% Similarity=0.348 Sum_probs=14.3
Q ss_pred cceeEeecCCCchHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~l 771 (1689)
.-+.+.=|.|+|||+.+-
T Consensus 216 rGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 347778899999998764
No 381
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=29.26 E-value=22 Score=36.88 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=15.0
Q ss_pred cEEEEccCCCChHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lL 516 (1689)
.+++++|.|||||..+-.
T Consensus 4 ~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 578999999999987643
No 382
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=29.22 E-value=40 Score=40.18 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=27.6
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccch
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMR 546 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtr 546 (1689)
.|.-+++.+|.|+|||..++-.+..... .+.+++|+..-.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~-----------~g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK-----------AGGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH-----------TTCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH-----------CCCeEEEEECCC
Confidence 6788999999999999766554443322 123688886653
No 383
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=29.12 E-value=25 Score=37.84 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=19.4
Q ss_pred cCCcEEEEccCCCChHHHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCML 519 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL 519 (1689)
.|+-+++.+|+|||||..+..-+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 577889999999999987665443
No 384
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=29.07 E-value=24 Score=43.14 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=25.4
Q ss_pred eEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 757 SFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 757 ~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
.+..|.|+|||....- .+ . ..+.++++|+++++.++
T Consensus 165 ~I~G~aGsGKTt~I~~----~~-~-----------~~~~lVlTpT~~aa~~l 200 (446)
T 3vkw_A 165 LVDGVPGCGKTKEILS----RV-N-----------FEEDLILVPGRQAAEMI 200 (446)
T ss_dssp EEEECTTSCHHHHHHH----HC-C-----------TTTCEEEESCHHHHHHH
T ss_pred EEEcCCCCCHHHHHHH----Hh-c-----------cCCeEEEeCCHHHHHHH
Confidence 4457899999987541 11 0 13569999999999874
No 385
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=29.06 E-value=23 Score=37.11 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
+..+++++|.|||||-.+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56789999999999987644
No 386
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=29.03 E-value=32 Score=42.04 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=17.3
Q ss_pred HHHhcCCc--EEEEccCCCChHHHH
Q psy14582 492 SALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 492 ~al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
.++ .|.| ++..++||||||..-
T Consensus 131 ~~l-~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 131 HNF-EGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred Hhh-cCCceEEEEeCCCCCCCCEEe
Confidence 345 6777 478889999999875
No 387
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.00 E-value=27 Score=52.66 Aligned_cols=26 Identities=35% Similarity=0.650 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCcEEEEccCCCChHHH
Q psy14582 488 RLCKSALESDENLLLCAPTGAGKTNV 513 (1689)
Q Consensus 488 ~aip~al~~g~nvLv~APTGSGKT~a 513 (1689)
..+..++..++++|+++|||+|||..
T Consensus 1295 ~ll~~ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1295 DVLHAWLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHHHHHHHTTCCCEEESSTTSSHHHH
T ss_pred HHHHHHHHCCCcEEEECCCCCCHHHH
Confidence 45566677899999999999999954
No 388
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=29.00 E-value=25 Score=42.25 Aligned_cols=19 Identities=47% Similarity=0.742 Sum_probs=15.8
Q ss_pred cCCc--EEEEccCCCChHHHH
Q psy14582 496 SDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 496 ~g~n--vLv~APTGSGKT~a~ 514 (1689)
.|.| ++..++||||||..-
T Consensus 96 ~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 96 EGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCEEEEEESCTTSSHHHHH
T ss_pred cCceeeEeeecCCCCCCCeEe
Confidence 6777 477899999999875
No 389
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=28.95 E-value=81 Score=37.18 Aligned_cols=82 Identities=11% Similarity=0.097 Sum_probs=57.8
Q ss_pred HHHhccCCCCCccccCCCCCHHHHHHHHhcCC-CchhhccCChhhhhhhhcCChh-hHHHHHHHHhCCcceEEEEeeccc
Q psy14582 1352 MVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNF-PWERLYDLGPNEIGELIRVPKL-GKTIHKYVHQFPKLELATHIQPIT 1429 (1689)
Q Consensus 1352 ~i~~~~W~~~~pLrQ~~~i~~~~i~~~~~~~~-~~~~l~dl~~~el~~ll~~~~~-g~~i~~~~~~~P~l~l~~~~~pi~ 1429 (1689)
.+...+|+ .|+..++|++....++|++.|+ ++.++..++...+...++ .. |..+++.++-...-.++ |..
T Consensus 170 ~~~~~L~~--lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~fG--~~~g~~l~~~a~G~d~~~v~----~~~ 241 (352)
T 1jx4_A 170 EVKRLIRE--LDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIG--EAKAKYLISLARDEYNEPIR----TRV 241 (352)
T ss_dssp HHHHHHHH--SBGGGSTTCCHHHHHHHHTTTCCBGGGGGSSCHHHHHHHHC--HHHHHHHHHHHTTCCCCCCC----CCC
T ss_pred HHHHHHHh--CCCCcccccCHHHHHHHHHcCCchHHHHHCCCHHHHHHhcC--hhHHHHHHHHhCCCCCCCcc----CCC
Confidence 34455554 5999999999999999999998 889999988888777654 34 77788888777654432 211
Q ss_pred cceEEEEEeecC
Q psy14582 1430 RSTLRVELTISP 1441 (1689)
Q Consensus 1430 ~~~~~~~~~i~~ 1441 (1689)
+..+..+.++.+
T Consensus 242 ~ksi~~~~tf~~ 253 (352)
T 1jx4_A 242 RKSIGRIVTMKR 253 (352)
T ss_dssp CCEEEEEEEEEE
T ss_pred CceEEeeeecCC
Confidence 344555555444
No 390
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=28.91 E-value=44 Score=39.37 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=27.4
Q ss_pred HhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEcc
Q psy14582 494 LESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAP 544 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laP 544 (1689)
+..|.-+++.|++|+|||..++--+.+... .+..++|++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~-----------~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALN-----------DDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHH-----------TTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-----------cCCeEEEEeC
Confidence 346777899999999999766554444332 2347888764
No 391
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=28.90 E-value=37 Score=41.66 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=21.1
Q ss_pred hcCCcEEEEccCCCChHHHHHHHHHHHH
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLCMLQEI 522 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLpiL~~l 522 (1689)
..|.-+++.|++|+|||..++--+....
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678889999999999976655544433
No 392
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=28.78 E-value=76 Score=31.91 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=17.4
Q ss_pred ccccceeEeecCCCchHHHHH
Q psy14582 751 ETILPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 751 e~~~pv~~~aPTGsGKT~~~l 771 (1689)
....||.+.-|+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 456789999999999998764
No 393
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=28.69 E-value=30 Score=39.60 Aligned_cols=19 Identities=42% Similarity=0.723 Sum_probs=16.0
Q ss_pred cEEEEccCCCChHHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lLp 517 (1689)
++++++|.|+|||..+..-
T Consensus 40 ~~ll~G~~G~GKt~la~~l 58 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIAL 58 (319)
T ss_dssp CEEEESSSSSSHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHH
Confidence 6999999999999876443
No 394
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=28.58 E-value=22 Score=42.42 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=15.3
Q ss_pred cEEEEccCCCChHHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lLp 517 (1689)
-.++++|||||||..+-.-
T Consensus 25 ~~~i~G~NGaGKTTll~ai 43 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAI 43 (365)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4579999999999887443
No 395
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=28.48 E-value=21 Score=37.12 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.|..+++++|.|||||..+-.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 356789999999999987644
No 396
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=28.37 E-value=24 Score=36.35 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=15.3
Q ss_pred cEEEEccCCCChHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lL 516 (1689)
.+++++|.|||||.++-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999987654
No 397
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=28.18 E-value=45 Score=36.06 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=27.3
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccc
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPt 545 (1689)
.|+=.++++|.|||||.-.+-.+-+... .+.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~-----------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI-----------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH-----------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-----------cCCeEEEEccc
Confidence 3566789999999999655444434333 23589999887
No 398
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=28.15 E-value=23 Score=43.44 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
.+.+|+++|+|+|||..+-.
T Consensus 167 ~~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 47899999999999987743
No 399
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=28.09 E-value=25 Score=41.59 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=19.1
Q ss_pred HHHHHHhcCCcE--EEEccCCCChHHHH
Q psy14582 489 LCKSALESDENL--LLCAPTGAGKTNVA 514 (1689)
Q Consensus 489 aip~al~~g~nv--Lv~APTGSGKT~a~ 514 (1689)
++..++ .|.|. +..++||||||..-
T Consensus 77 lv~~~l-~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSL-DGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGG-TTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHH-CCcceeEEEeCCCCCCCceEe
Confidence 444455 68875 77889999999876
No 400
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=27.82 E-value=1.4e+02 Score=37.04 Aligned_cols=42 Identities=10% Similarity=-0.077 Sum_probs=24.3
Q ss_pred hhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCC
Q psy14582 809 VGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLP 856 (1689)
Q Consensus 809 v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~ 856 (1689)
..+++|||+|.+.......+..+.. .+.. ...++|+.+++..
T Consensus 149 ~~vliIDEid~l~~~~~~~l~~L~~----~l~~--~~~~iIli~~~~~ 190 (516)
T 1sxj_A 149 HFVIIMDEVDGMSGGDRGGVGQLAQ----FCRK--TSTPLILICNERN 190 (516)
T ss_dssp SEEEEECSGGGCCTTSTTHHHHHHH----HHHH--CSSCEEEEESCTT
T ss_pred CeEEEEECCCccchhhHHHHHHHHH----HHHh--cCCCEEEEEcCCC
Confidence 4578999999987632222333222 1222 3567888887643
No 401
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=27.67 E-value=42 Score=38.33 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=19.7
Q ss_pred HhcCCcEEEEccCCCChHHHHHHHH
Q psy14582 494 LESDENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~lLpi 518 (1689)
+..|+-+++.+|+|||||..+..-+
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3468889999999999997665433
No 402
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=27.59 E-value=34 Score=37.40 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=17.3
Q ss_pred HhcCCcEEEEccCCCChHHHHH
Q psy14582 494 LESDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~l 515 (1689)
+..|+-+.+++|+|||||-..-
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 3478899999999999997543
No 403
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=27.57 E-value=30 Score=36.60 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=17.5
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.+..++++++.|||||.++-.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999987643
No 404
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=27.52 E-value=45 Score=46.19 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=45.6
Q ss_pred CcEEEEccCCCChHHHHHHHHHHHHhhcccCCC-CCCCCCeEEEEEccchhhhHhhhhcccccc
Q psy14582 498 ENLLLCAPTGAGKTNVALLCMLQEIGKHINADG-TINADEFKIIYVAPMRSLVQEMVGNFGKDE 560 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g-~~~~~~~kvl~laPtreLa~Qi~~~f~kde 560 (1689)
...+|.|.-|||||.+-.--+++.+.......+ ......-++|+|+=|++=|.++.+++.+.+
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 455999999999999988888888864310000 011123479999999999999988877654
No 405
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=27.18 E-value=35 Score=40.18 Aligned_cols=45 Identities=18% Similarity=0.059 Sum_probs=0.0
Q ss_pred HhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEc
Q psy14582 494 LESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVA 543 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~la 543 (1689)
+..|.-+++++|+|||||..++--+........... .+.+++|+.
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg-----~~~~vlyi~ 163 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY-----PGGKIIFID 163 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB-----CCCEEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC-----CCCeEEEEE
No 406
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.16 E-value=70 Score=38.90 Aligned_cols=19 Identities=32% Similarity=0.162 Sum_probs=14.8
Q ss_pred ccceeEeecCCCchHHHHH
Q psy14582 753 ILPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~l 771 (1689)
..-+.+.=|.|+|||+.+-
T Consensus 216 prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CSEEEEESSTTTTHHHHHH
T ss_pred CCCCceECCCCchHHHHHH
Confidence 3347788899999998764
No 407
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.11 E-value=58 Score=39.63 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=14.4
Q ss_pred cceeEeecCCCchHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~l 771 (1689)
.-+.+.-|.|+|||..+-
T Consensus 207 rGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CEEEEESCTTTTHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 347788899999998764
No 408
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=27.02 E-value=29 Score=41.13 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=18.5
Q ss_pred HHHHHHhcCCc--EEEEccCCCChHHHH
Q psy14582 489 LCKSALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 489 aip~al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
++..++ .|.| ++..++||||||..-
T Consensus 76 lv~~~l-~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSL-DGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGG-GTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhc-CCceeEEEEECCCCCCCcEec
Confidence 333445 6777 478889999999875
No 409
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=26.98 E-value=94 Score=35.71 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=41.0
Q ss_pred eeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccc-------hhHHHH---------HhhccccCCcee
Q psy14582 756 VSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM-------RSLVQE---------MVGNFGKDEIHL 819 (1689)
Q Consensus 756 v~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~-------r~L~~q---------~v~liIiDEiHl 819 (1689)
+.+.-|+|+|||..... +.+.+ +..++++.+. +.+..+ ..+++++||+|.
T Consensus 51 ~L~~G~~G~GKT~la~~-la~~l-------------~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~ 116 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKA-LCHDV-------------NADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDR 116 (324)
T ss_dssp EEECSSTTSSHHHHHHH-HHHHT-------------TEEEEEEETTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCC
T ss_pred EEeeCcCCCCHHHHHHH-HHHHh-------------CCCEEEEcccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcc
Confidence 44556799999987542 22222 2344555432 222222 246899999998
Q ss_pred ecCCchhHHHHHHHHHHHHHHhccccceEEEEec
Q psy14582 820 LHDERGPVLEALIARTIRNIEATQEDVRLVGLSA 853 (1689)
Q Consensus 820 l~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSA 853 (1689)
+.. ....+. +++.++....+.++|+.+.
T Consensus 117 l~~--~~~~~~----L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 117 SGL--AESQRH----LRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp GGG--HHHHHH----HHHHHHHHGGGCEEEEEES
T ss_pred cCc--HHHHHH----HHHHHHhCCCCcEEEEEeC
Confidence 852 111121 2222334445677777543
No 410
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=26.88 E-value=34 Score=36.02 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=18.9
Q ss_pred HhcCCcEEEEccCCCChHHHHHHH
Q psy14582 494 LESDENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~lLp 517 (1689)
+..+..++++++.|||||.++-.-
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHH
Confidence 335678999999999999876443
No 411
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=26.85 E-value=41 Score=43.26 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHhc-CCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhh
Q psy14582 481 TLNRIQSRLCKSALES-DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMV 553 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~-g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~ 553 (1689)
.+|.-|.+++..++.. ..-.++.|+=|.|||.+..+.+-. +.. ++++.||+.+=++...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~~-------------~~~vtAP~~~a~~~l~ 234 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IAG-------------RAIVTAPAKASTDVLA 234 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SSS-------------CEEEECSSCCSCHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HHh-------------CcEEECCCHHHHHHHH
Confidence 6899999999877642 234699999999999777776643 211 3699999998776544
No 412
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=26.83 E-value=25 Score=43.32 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=18.7
Q ss_pred cCCcEEEEccCCCChHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLp 517 (1689)
...|+|+++|+|+|||.++-.-
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHH
Confidence 4678999999999999987553
No 413
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.74 E-value=56 Score=38.07 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=20.6
Q ss_pred HHHHHHhcCCc--EEEEccCCCChHHHHHHH
Q psy14582 489 LCKSALESDEN--LLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 489 aip~al~~g~n--vLv~APTGSGKT~a~lLp 517 (1689)
.+...+..|+- +++++|.|+|||..+..-
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHH
Confidence 33344555543 999999999999877543
No 414
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=26.71 E-value=27 Score=38.35 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=17.4
Q ss_pred HhcCCcEEEEccCCCChHHHHH
Q psy14582 494 LESDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~l 515 (1689)
+..|+-+.+++|+|||||-..-
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 3478889999999999997654
No 415
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=26.61 E-value=1.3e+02 Score=34.85 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=14.4
Q ss_pred cceeEeecCCCchHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~l 771 (1689)
..+.+.-|+|+|||....
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 357788899999998764
No 416
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=26.57 E-value=47 Score=36.97 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=29.2
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchh
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS 547 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtre 547 (1689)
.|.=.++++|-|||||.+++=-+.+... .+.+++++-|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~-----------~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI-----------AQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT-----------TTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-----------CCCeEEEEeecCC
Confidence 3555688999999999877666555443 3457888888763
No 417
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=26.52 E-value=58 Score=38.07 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=34.3
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcc
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f 556 (1689)
.| -+++.+|.|+|||..++-.+.+..... .+.+++|+....++.+...+.+
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g---------~g~~vlyId~E~s~~~~ra~~l 78 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQY---------PDAVCLFYDSEFGITPAYLRSM 78 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHC---------TTCEEEEEESSCCCCHHHHHHT
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcC---------CCceEEEEeccchhhHHHHHHh
Confidence 45 589999999999987765554443321 2358999988777755444333
No 418
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=26.13 E-value=22 Score=37.38 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.4
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.|..++++++.|||||..+-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456789999999999987654
No 419
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=25.87 E-value=31 Score=41.22 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=18.1
Q ss_pred HHHHHHhcCCc--EEEEccCCCChHHHH
Q psy14582 489 LCKSALESDEN--LLLCAPTGAGKTNVA 514 (1689)
Q Consensus 489 aip~al~~g~n--vLv~APTGSGKT~a~ 514 (1689)
++..++ .|.| ++..++||||||..-
T Consensus 107 lv~~~l-~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSAL-DGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGG-GTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhc-CCCceEEEEeCCCCCCCceEe
Confidence 334445 6777 477889999999764
No 420
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=25.86 E-value=52 Score=36.96 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.1
Q ss_pred ccceeEeecCCCchHHHHH
Q psy14582 753 ILPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~l 771 (1689)
..++.+.-|+|+|||....
T Consensus 64 ~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3467788899999998764
No 421
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=25.84 E-value=25 Score=44.79 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=14.8
Q ss_pred cEEEEccCCCChHHHH
Q psy14582 499 NLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~ 514 (1689)
++|+++|+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 9999999999999765
No 422
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=25.73 E-value=1e+02 Score=35.99 Aligned_cols=21 Identities=33% Similarity=0.196 Sum_probs=16.3
Q ss_pred ccccceeEeecCCCchHHHHH
Q psy14582 751 ETILPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 751 e~~~pv~~~aPTGsGKT~~~l 771 (1689)
....++.+.-|+|+|||....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHH
Confidence 445568888999999997653
No 423
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=25.73 E-value=26 Score=37.58 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHH
Q psy14582 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lL 516 (1689)
..+..+...+. ...|.-+.+++|.|||||-.+-.
T Consensus 11 ~~~~~~~~~~~--~~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 11 SVEKVDRQRLL--DQKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp CCCHHHHHHHH--TSCCEEEEEECSTTSSHHHHHHH
T ss_pred ccCHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHH
Confidence 45555554431 23577889999999999987644
No 424
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.60 E-value=29 Score=42.60 Aligned_cols=19 Identities=37% Similarity=0.725 Sum_probs=16.3
Q ss_pred CcEEEEccCCCChHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lL 516 (1689)
.++|+++|+|+|||..+-.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 4799999999999987753
No 425
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=25.54 E-value=40 Score=33.19 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=42.8
Q ss_pred ccccCC--CCCHHHHHHHHhcCC-CchhhccCChhhhhhhhcCChh-hHHHHHHHHhC
Q psy14582 1363 PLRQFR--KIPEEIIKKIEKKNF-PWERLYDLGPNEIGELIRVPKL-GKTIHKYVHQF 1416 (1689)
Q Consensus 1363 pLrQ~~--~i~~~~i~~~~~~~~-~~~~l~dl~~~el~~ll~~~~~-g~~i~~~~~~~ 1416 (1689)
|+-.++ |+++..++||...|+ +++.+...++.++..+-.+... ..+|...++++
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 666677 899999999999998 8999988899888888776543 45566666654
No 426
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=25.48 E-value=28 Score=41.11 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=15.8
Q ss_pred cEEEEccCCCChHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lL 516 (1689)
++++++|+|+|||..+-.
T Consensus 46 ~~li~G~~G~GKTtl~~~ 63 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK 63 (389)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 799999999999987643
No 427
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=25.46 E-value=26 Score=40.28 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
+.-+++++|.|||||-.+-.
T Consensus 33 ~~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44689999999999987643
No 428
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=25.41 E-value=68 Score=36.19 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=20.9
Q ss_pred HhcCCcEEEEccCCCChHHHHHHHHH
Q psy14582 494 LESDENLLLCAPTGAGKTNVALLCML 519 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~lLpiL 519 (1689)
+..|+-+++.+|+|||||..+..-+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34788899999999999987665543
No 429
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=25.40 E-value=28 Score=36.45 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=14.7
Q ss_pred cEEEEccCCCChHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lL 516 (1689)
-.++++|+|||||..+-.
T Consensus 28 ~~~i~G~NGsGKStll~a 45 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDA 45 (182)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 458999999999987543
No 430
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=25.36 E-value=27 Score=34.41 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=50.9
Q ss_pred cccccCC--CCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhhcCCHHHHHHHHHHHhcCC
Q psy14582 1506 SYLKQLP--HFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYP 1563 (1689)
Q Consensus 1506 s~LlQlP--h~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll~l~~~q~~~v~~~~~~~P 1563 (1689)
-++..|| ++++..+++++..++.|+.++...+..+-..+.++++....++...++++-
T Consensus 23 ~~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 23 QPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLV 82 (114)
T ss_dssp CCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHS
T ss_pred ccHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHHc
Confidence 3566777 899999999999999999999999988888888899999999999998763
No 431
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=25.36 E-value=44 Score=39.64 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=29.2
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ 550 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~ 550 (1689)
.|+-+++.+|.|||||..++- +...+.. .+.+++|+.....+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~-la~~~~~----------~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALH-AIAEAQK----------MGGVAAFIDAEHALDP 103 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHH-HHHHHHH----------TTCCEEEEESSCCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHH-HHHHHHh----------cCCeEEEEecccccch
Confidence 577889999999999975543 3333332 2236888876654433
No 432
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=25.30 E-value=30 Score=40.69 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=17.7
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.++.+++++|+|+|||..+-.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 367899999999999987654
No 433
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=25.30 E-value=29 Score=39.32 Aligned_cols=18 Identities=44% Similarity=0.774 Sum_probs=15.3
Q ss_pred CcEEEEccCCCChHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~l 515 (1689)
+.+++++|+|+|||..+-
T Consensus 74 ~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcChHHHHHH
Confidence 459999999999997654
No 434
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=25.18 E-value=69 Score=34.78 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHhcCCcEEEEccCCCChHHHHH
Q psy14582 483 NRIQSRLCKSALESDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 483 tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~l 515 (1689)
+.-|..++..+ ..|+-+.+.+|.|||||..+-
T Consensus 9 ~~g~~~~l~~i-~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 9 TLGQKHYVDAI-DTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp SHHHHHHHHHH-HHCSEEEEECCTTSSTTHHHH
T ss_pred CHhHHHHHHhc-cCCCEEEEECCCCCCHHHHHH
Confidence 44566677654 578999999999999997643
No 435
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.95 E-value=85 Score=38.52 Aligned_cols=19 Identities=32% Similarity=0.246 Sum_probs=14.5
Q ss_pred ccceeEeecCCCchHHHHH
Q psy14582 753 ILPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~l 771 (1689)
..-+.+.=|.|+|||+.+-
T Consensus 243 prGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CSEEEECSCTTSSHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHH
Confidence 3347778899999998754
No 436
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=24.92 E-value=23 Score=37.41 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCChHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLp 517 (1689)
|+-+++++|.|||||-.+-.-
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 345789999999999866443
No 437
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=24.85 E-value=27 Score=36.51 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.|+=+.+++|+|||||-.+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 567789999999999977654
No 438
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=24.62 E-value=1e+02 Score=36.30 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.0
Q ss_pred ccceeEeecCCCchHHHHH
Q psy14582 753 ILPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~l 771 (1689)
..++.+.-|+|+|||....
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3457788899999998764
No 439
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=24.61 E-value=99 Score=32.53 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=14.3
Q ss_pred cceeEeecCCCchHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~l 771 (1689)
.++.+.-|+|+|||....
T Consensus 39 ~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357888999999997653
No 440
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=24.55 E-value=58 Score=36.09 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=18.9
Q ss_pred cEEEEccCCCChHHHHHHHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALLCMLQEI 522 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lLpiL~~l 522 (1689)
++++.++.|+|||..++--.....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999998765554433
No 441
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=24.54 E-value=37 Score=37.06 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=20.2
Q ss_pred hcCCcEEEEccCCCChHHHHHHHHH
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLCML 519 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLpiL 519 (1689)
..|+-+++.+|+|||||..+..-+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3678899999999999987765543
No 442
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=24.51 E-value=41 Score=36.44 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.6
Q ss_pred EEEEccCCCChHHHHHHHH
Q psy14582 500 LLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 500 vLv~APTGSGKT~a~lLpi 518 (1689)
.+++++.|||||..++.-+
T Consensus 8 ~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 5899999999999875443
No 443
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=24.47 E-value=30 Score=36.98 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
...++++++.|||||-.+-.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35789999999999987644
No 444
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=24.41 E-value=28 Score=36.67 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.+..++++++.|||||..+-.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 355689999999999987644
No 445
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=24.34 E-value=68 Score=27.93 Aligned_cols=53 Identities=17% Similarity=0.350 Sum_probs=41.0
Q ss_pred CcccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhhcCCHHH-HHHHHHHHh
Q psy14582 1505 DSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQ-LADVARFCN 1560 (1689)
Q Consensus 1505 ~s~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll~l~~~q-~~~v~~~~~ 1560 (1689)
.|.|..||++++...+.+-+ ...++.++...+.++-.++ ++.+. -+.|.++++
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~-~Fgs~~~i~~As~eeL~~v--ig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMH-HVKNIAELAALSQDELTSI--LGNAANAKQLYDFIH 56 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHH-HCSSHHHHHTCCHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred HhHHHcCCCCCHHHHHHHHH-HcCCHHHHHHCCHHHHHHH--cCchHHHHHHHHHHh
Confidence 36788999999987776643 3679999999999999888 44555 677777775
No 446
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=24.26 E-value=1e+02 Score=32.05 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=13.7
Q ss_pred cceeEeecCCCchHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~l 771 (1689)
..+.+.-|+|+|||....
T Consensus 39 ~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp CEEEECCSSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 446677899999997653
No 447
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=24.20 E-value=75 Score=29.16 Aligned_cols=50 Identities=14% Similarity=0.269 Sum_probs=39.4
Q ss_pred CCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhhcCCHHHHHHHHHHHhcC
Q psy14582 1513 HFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRY 1562 (1689)
Q Consensus 1513 h~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll~l~~~q~~~v~~~~~~~ 1562 (1689)
.++.....-+++.+|.|+.||+..+.++-.++=++..+-+++|...+..+
T Consensus 22 ~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e~ 71 (79)
T 3gfk_B 22 DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEEL 71 (79)
T ss_dssp CCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHHc
Confidence 44555566667889999999999999887766678888888888877654
No 448
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.00 E-value=35 Score=42.57 Aligned_cols=20 Identities=40% Similarity=0.610 Sum_probs=17.2
Q ss_pred CcEEEEccCCCChHHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLp 517 (1689)
+.+|+++|+|+|||..+..-
T Consensus 78 ~~lLL~GppGtGKTtla~~l 97 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLV 97 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 68999999999999887543
No 449
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=24.00 E-value=45 Score=35.93 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEccCCCChHHHHHH
Q psy14582 481 TLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 481 ~~tpiQ~~aip~al~~g~nvLv~APTGSGKT~a~lL 516 (1689)
..++.++.... ...|..++++++.|||||-.+-.
T Consensus 11 ~~~~~~r~~~~--~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 11 ALTRSERTELR--NQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp CCCHHHHHHHH--TSSCEEEEEECSTTSSHHHHHHH
T ss_pred ccCHHHhhccc--CCCCCEEEEECCCCCCHHHHHHH
Confidence 34566666642 34677889999999999987654
No 450
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=23.96 E-value=67 Score=35.43 Aligned_cols=18 Identities=28% Similarity=0.128 Sum_probs=12.0
Q ss_pred eEeecCCCchHHHHHHHH
Q psy14582 757 SFRLPRGAGKTNVALLCM 774 (1689)
Q Consensus 757 ~~~aPTGsGKT~~~lL~i 774 (1689)
.+.-|.|+|||...+-.+
T Consensus 16 litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 16 FITGPMFAGKTAELIRRL 33 (223)
T ss_dssp EEECSTTSCHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 344668999997765433
No 451
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=23.94 E-value=36 Score=35.67 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=16.5
Q ss_pred CcEEEEccCCCChHHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLp 517 (1689)
..++++++.|||||.++-.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999887443
No 452
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=23.93 E-value=32 Score=37.64 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.+..++++++.|||||-.+-.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHH
Confidence 456789999999999987643
No 453
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=23.59 E-value=49 Score=36.27 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=19.9
Q ss_pred HhcCCcEEEEccCCCChHHHHHHHH
Q psy14582 494 LESDENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 494 l~~g~nvLv~APTGSGKT~a~lLpi 518 (1689)
+..|+-+.+.+|+|||||..+..-+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3478899999999999997665443
No 454
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=23.23 E-value=68 Score=41.22 Aligned_cols=44 Identities=30% Similarity=0.477 Sum_probs=31.2
Q ss_pred eeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHHhh
Q psy14582 756 VSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVG 810 (1689)
Q Consensus 756 v~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~v~ 810 (1689)
.+++-|.|+|||.+..-.+.+.+ + .+.++++++||..-+.+++.
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~-~----------~~~~ILv~a~TN~AvD~i~e 251 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAV-K----------QGLKVLCCAPSNIAVDNLVE 251 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH-H----------TTCCEEEEESSHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHH-h----------CCCeEEEEcCchHHHHHHHH
Confidence 46778999999987543333333 2 25689999999988877543
No 455
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=23.23 E-value=36 Score=37.03 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=17.9
Q ss_pred cCCcEEEEccCCCChHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLp 517 (1689)
.+..+++++|.|||||-.+-.-
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3567999999999999887543
No 456
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=23.19 E-value=27 Score=38.27 Aligned_cols=20 Identities=45% Similarity=0.674 Sum_probs=12.9
Q ss_pred hcCCcEEEEccCCCChHHHH
Q psy14582 495 ESDENLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~ 514 (1689)
..|+-+.+.+|+|||||-..
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35778899999999999765
No 457
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=23.14 E-value=51 Score=41.00 Aligned_cols=98 Identities=14% Similarity=0.171 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHH----------HHHhccCCCCCccccCCCCCHHHHHHHHhcCC-CchhhccCChhhhhhhhcCChhhHH
Q psy14582 1340 AQLADKALSLCK----------MVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNF-PWERLYDLGPNEIGELIRVPKLGKT 1408 (1689)
Q Consensus 1340 ~~~a~~~l~L~k----------~i~~~~W~~~~pLrQ~~~i~~~~i~~~~~~~~-~~~~l~dl~~~el~~ll~~~~~g~~ 1408 (1689)
..+|+.|..+.| .+...+|+ .|+..++||+....++|++.|| ++.+|..++...+...++. ..|..
T Consensus 285 k~LAKlAs~~~KP~G~~vl~~~~~~~~L~~--LPV~~l~GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~fG~-~~g~~ 361 (504)
T 3gqc_A 285 ILLARMATRKAKPDGQYHLKPEEVDDFIRG--QLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFGP-KTGQM 361 (504)
T ss_dssp HHHHHHHHHHHCSSCEEECCGGGHHHHHHH--SBGGGSTTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHHHCH-HHHHH
T ss_pred HHHHHHHHhhCccCCEEEECHHHHHHHHhc--CChhHhhCcCHHHHHHHHHcCCCcHHHHHhccHHHHHHhhCh-hHHHH
Confidence 345566666554 23344453 6999999999999999999998 8899999988887776541 34777
Q ss_pred HHHHHHhCCcceEEEEeeccccceEEEEEeecCCC
Q psy14582 1409 IHKYVHQFPKLELATHIQPITRSTLRVELTISPDF 1443 (1689)
Q Consensus 1409 i~~~~~~~P~l~l~~~~~pi~~~~~~~~~~i~~~~ 1443 (1689)
+++.++-...-.+... + .+..+..+.++..++
T Consensus 362 L~~~a~GiD~~pV~~~--~-~~KSi~~e~tf~~d~ 393 (504)
T 3gqc_A 362 LYRFCRGLDDRPVRTE--K-ERKSVSAEINYGIRF 393 (504)
T ss_dssp HHHHTTTCCCCCCCCC--C-CCCCEEEEECSSCCC
T ss_pred HHHHhcCCCccccccc--c-CCcceeeeeccCCCC
Confidence 7777766643332211 1 133455555554443
No 458
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=23.13 E-value=32 Score=40.44 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.9
Q ss_pred EEEEccCCCChHHHHH
Q psy14582 500 LLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 500 vLv~APTGSGKT~a~l 515 (1689)
.++++|+|||||...-
T Consensus 26 ~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4799999999999864
No 459
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=23.12 E-value=30 Score=36.28 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
+..++++++.|||||..+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45689999999999987744
No 460
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=22.91 E-value=32 Score=45.15 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=19.0
Q ss_pred cCCcEEEEccCCCChHHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCM 518 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpi 518 (1689)
...|+|+++|+|+|||.++-.-.
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la 222 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLA 222 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHH
Confidence 46799999999999999875443
No 461
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=22.80 E-value=41 Score=36.79 Aligned_cols=23 Identities=26% Similarity=0.671 Sum_probs=18.1
Q ss_pred cEEEEccCCCChHHHHHHHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALLCMLQEI 522 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lLpiL~~l 522 (1689)
.+|+.+|.|+|||..+ ..+.+.+
T Consensus 60 ~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 5899999999999877 4445555
No 462
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=22.47 E-value=38 Score=35.23 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=16.4
Q ss_pred CcEEEEccCCCChHHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLp 517 (1689)
.++++++|.|||||.++-.-
T Consensus 5 ~~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 47899999999999876443
No 463
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=22.37 E-value=72 Score=36.37 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=21.8
Q ss_pred HHHHHhcCCcE--EEEccCCCChHHHHHHHHHH
Q psy14582 490 CKSALESDENL--LLCAPTGAGKTNVALLCMLQ 520 (1689)
Q Consensus 490 ip~al~~g~nv--Lv~APTGSGKT~a~lLpiL~ 520 (1689)
+..++++|.|+ +..++||||||--+++-++.
T Consensus 84 i~scLd~GyNvcIfSyGQTGsGKT~ral~q~f~ 116 (298)
T 2o0a_A 84 HDMCLNQKKNFNLISLSTTPHGSLRESLIKFLA 116 (298)
T ss_dssp HHHHHHTTCCEEEEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCccHHHHHHHHH
Confidence 34567667765 78889999999655555544
No 464
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=22.37 E-value=38 Score=34.85 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=16.0
Q ss_pred CcEEEEccCCCChHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lL 516 (1689)
..++++++.|||||.++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999987744
No 465
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=22.34 E-value=59 Score=38.07 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=15.3
Q ss_pred cEEEEccCCCChHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lL 516 (1689)
.+++++|.|+|||..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~ 57 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARL 57 (373)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999987643
No 466
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=22.33 E-value=38 Score=36.49 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=17.3
Q ss_pred hcCCcEEEEccCCCChHHHHH
Q psy14582 495 ESDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~l 515 (1689)
..|+-+.+.+|+|||||-.+-
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 478889999999999997653
No 467
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=22.28 E-value=1.9e+02 Score=33.93 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=14.5
Q ss_pred cceeEeecCCCchHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~l 771 (1689)
.++.+.-|+|+|||....
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 357788899999998764
No 468
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=22.27 E-value=34 Score=36.89 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=15.3
Q ss_pred cEEEEccCCCChHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lL 516 (1689)
.+++++|.|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987754
No 469
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=22.24 E-value=75 Score=40.54 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=35.0
Q ss_pred ccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHHHH
Q psy14582 753 ILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 808 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~q~ 808 (1689)
.-|+.+.+|.|+|||.+..--+...+... ..+..+++++++|+..+.++
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~~l~~~~-------~~~~~~iL~ltft~~aa~e~ 70 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIAWLMSVE-------NCSPYSIMAVTFTNKAAAEM 70 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTS-------CCCGGGEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHhC-------CCChhhEEEEeccHHHHHHH
Confidence 45788899999999988665444444321 01245899999999998885
No 470
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=22.15 E-value=35 Score=42.99 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=17.8
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.|..+++.+|+|+|||..+-.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 377899999999999987653
No 471
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=22.11 E-value=36 Score=36.82 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.2
Q ss_pred cEEEEccCCCChHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~l 515 (1689)
-.++++|+|||||.+.-
T Consensus 25 ~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLD 41 (203)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 45889999999998854
No 472
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=22.07 E-value=56 Score=47.19 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=30.0
Q ss_pred hcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEc
Q psy14582 495 ESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVA 543 (1689)
Q Consensus 495 ~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~la 543 (1689)
..|+++++++|+|+|||..+..-+...+. .+.+++|+.
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k-----------~Ge~~~Fit 1116 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQR-----------EGKTCAFID 1116 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHT-----------TTCCEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH-----------cCCeEEEEE
Confidence 36899999999999999988777766554 244788875
No 473
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=22.01 E-value=34 Score=35.76 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=17.3
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.|..++++++.|||||.++-+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~ 24 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMA 24 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467789999999999987543
No 474
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=21.93 E-value=72 Score=29.62 Aligned_cols=52 Identities=17% Similarity=0.342 Sum_probs=40.8
Q ss_pred cccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhhcCCHHH-HHHHHHHHh
Q psy14582 1506 SYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQ-LADVARFCN 1560 (1689)
Q Consensus 1506 s~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll~l~~~q-~~~v~~~~~ 1560 (1689)
+.|..||++++...+.+-+ ...++.++..++.++-.++++ .+. -+.|..|++
T Consensus 18 s~L~~IpGIG~kr~~~LL~-~FgSl~~i~~AS~eEL~~vig--~~~~A~~I~~~l~ 70 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMH-HVKNIAELAALSQDELTSILG--NAANAKQLYDFIH 70 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHH-HSSCHHHHHHSCHHHHHHHHS--CHHHHHHHHHHHT
T ss_pred HHHHhCCCCCHHHHHHHHH-HcCCHHHHHHCCHHHHHHHhC--chHHHHHHHHHHH
Confidence 6788999999987776653 377999999999999998844 444 566777775
No 475
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=21.78 E-value=76 Score=36.37 Aligned_cols=19 Identities=42% Similarity=0.384 Sum_probs=14.8
Q ss_pred ccceeEeecCCCchHHHHH
Q psy14582 753 ILPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~l 771 (1689)
..++.+.-|+|+|||...-
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CSEEEEECSSSSSHHHHHH
T ss_pred CceEEEECCCCcCHHHHHH
Confidence 3457778899999998754
No 476
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=21.63 E-value=77 Score=36.65 Aligned_cols=55 Identities=9% Similarity=0.148 Sum_probs=42.2
Q ss_pred ccccCCCCCHHHHHHHHhcCC-CchhhccCChhhhhhhhcCCh--hhHHHHHHHHhCC
Q psy14582 1363 PLRQFRKIPEEIIKKIEKKNF-PWERLYDLGPNEIGELIRVPK--LGKTIHKYVHQFP 1417 (1689)
Q Consensus 1363 pLrQ~~~i~~~~i~~~~~~~~-~~~~l~dl~~~el~~ll~~~~--~g~~i~~~~~~~P 1417 (1689)
+|..++|+++..+++|.+.|+ +++++...++.++.++...+. ..+.+..+.+..|
T Consensus 4 ~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~~~~ 61 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCD 61 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHTT
T ss_pred cHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHHhhh
Confidence 788999999999999999998 899999999999988877653 2333444444444
No 477
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=21.54 E-value=61 Score=46.12 Aligned_cols=37 Identities=14% Similarity=0.250 Sum_probs=0.0
Q ss_pred cCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEc
Q psy14582 496 SDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVA 543 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~la 543 (1689)
.|+++++++|+|||||..++--+...+. .+.+++|+.
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~-----------~G~~vlYI~ 69 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQR-----------EGKTCAFID 69 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH-----------TTCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh-----------CCCceEEEE
No 478
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=21.46 E-value=42 Score=37.75 Aligned_cols=22 Identities=27% Similarity=0.467 Sum_probs=18.8
Q ss_pred cCCcEEEEccCCCChHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLp 517 (1689)
.|+.++++++.|||||.++-+-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3899999999999999886443
No 479
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=21.37 E-value=40 Score=36.53 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=17.8
Q ss_pred cCCcEEEEccCCCChHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLp 517 (1689)
.+..++++++.|||||..+-.-
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999876443
No 480
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=21.31 E-value=37 Score=42.00 Aligned_cols=20 Identities=40% Similarity=0.620 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCChHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lL 516 (1689)
.+.+++++|+|+|||..+-.
T Consensus 49 p~gvLL~GppGtGKT~Lara 68 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARA 68 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999987643
No 481
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=21.24 E-value=37 Score=36.66 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=15.3
Q ss_pred cEEEEccCCCChHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lL 516 (1689)
++++++|.|||||.++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999988754
No 482
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=21.13 E-value=40 Score=34.76 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=17.1
Q ss_pred CcEEEEccCCCChHHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lLp 517 (1689)
.+++++++.|||||.++-+-
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 68999999999999887543
No 483
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=21.13 E-value=36 Score=35.79 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=17.8
Q ss_pred cCCcEEEEccCCCChHHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lLp 517 (1689)
.|..++++++.|||||..+-.-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4667899999999999876543
No 484
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=21.11 E-value=39 Score=38.45 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=15.7
Q ss_pred CcEEEEccCCCChHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lL 516 (1689)
+.+++.+|.|+|||..+-.
T Consensus 45 ~GvlL~Gp~GtGKTtLaka 63 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKA 63 (274)
T ss_dssp SEEEEESSTTSCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 4599999999999987643
No 485
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=21.08 E-value=42 Score=35.65 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.|..++++++.|||||..+-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 467789999999999988743
No 486
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=21.04 E-value=90 Score=35.30 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=14.5
Q ss_pred cceeEeecCCCchHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~l 771 (1689)
.++.+.-|+|+|||....
T Consensus 55 ~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 457788899999998754
No 487
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=21.02 E-value=38 Score=35.42 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=15.8
Q ss_pred CcEEEEccCCCChHHHHHH
Q psy14582 498 ENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 498 ~nvLv~APTGSGKT~a~lL 516 (1689)
..++++++.|||||.++-.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4578999999999987644
No 488
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=20.85 E-value=86 Score=37.03 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=47.3
Q ss_pred CCccccCCCCCHHHHHHHHhcCC-CchhhccCChhhhhhhhcCChhhHHHHHHHHhCCcceE
Q psy14582 1361 MSPLRQFRKIPEEIIKKIEKKNF-PWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLEL 1421 (1689)
Q Consensus 1361 ~~pLrQ~~~i~~~~i~~~~~~~~-~~~~l~dl~~~el~~ll~~~~~g~~i~~~~~~~P~l~l 1421 (1689)
..|+.-++|++....++|++.|+ +..++..++...+...++ +..|..++..++-...-.+
T Consensus 177 ~lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG-~~~g~~l~~~a~G~d~~~v 237 (356)
T 4dez_A 177 DRPPDALWGVGPKTTKKLAAMGITTVADLAVTDPSVLTTAFG-PSTGLWLLLLAKGGGDTEV 237 (356)
T ss_dssp TSCGGGSTTCCHHHHHHHHHTTCCSHHHHHTSCHHHHHHHHC-HHHHHHHHHHHTTCCCCCC
T ss_pred cCcHHHHcCCchhHHHHHHHcCCCeecccccCCHHHHHHHhC-ChHHHHHHHHHcCCCcccc
Confidence 36999999999999999999998 889999998888776553 2356778888776654443
No 489
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=20.77 E-value=39 Score=36.20 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCChHHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~lL 516 (1689)
.+.-+.+++|+|||||..+-+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456788999999999976543
No 490
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=20.62 E-value=21 Score=41.70 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=0.0
Q ss_pred cccccCCCCCHHHHHhhhccCCCCHHHHhcCCHHHHHHhhcCCHHHHHHHHHHHhc
Q psy14582 1506 SYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNR 1561 (1689)
Q Consensus 1506 s~LlQlPh~~~~~~~~~~~~~v~~v~dl~~~~~~~r~~ll~l~~~q~~~v~~~~~~ 1561 (1689)
.++-+||++++..++++++.++.|+.+++..+..+..+..++++.+...+.+.+..
T Consensus 12 ~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~ 67 (324)
T 2z43_A 12 KTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARD 67 (324)
T ss_dssp --------------------------------------------------------
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 36889999999999999999999999999988777766667777777766665543
No 491
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=20.49 E-value=43 Score=35.64 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCChHHHHHHH
Q psy14582 497 DENLLLCAPTGAGKTNVALLC 517 (1689)
Q Consensus 497 g~nvLv~APTGSGKT~a~lLp 517 (1689)
+..++++++.|||||..+-.-
T Consensus 20 ~~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456899999999999876443
No 492
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=20.47 E-value=37 Score=36.47 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCChHHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVAL 515 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~l 515 (1689)
.|.-+.+.+|+|||||-.+-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHH
Confidence 45567899999999997653
No 493
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=20.21 E-value=1.7e+02 Score=30.73 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=14.7
Q ss_pred cceeEeecCCCchHHHHH
Q psy14582 754 LPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 754 ~pv~~~aPTGsGKT~~~l 771 (1689)
.++.+.-|+|+|||....
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 567888899999998653
No 494
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=20.16 E-value=1.3e+02 Score=34.61 Aligned_cols=19 Identities=16% Similarity=0.051 Sum_probs=15.4
Q ss_pred ccceeEeecCCCchHHHHH
Q psy14582 753 ILPVSFRLPRGAGKTNVAL 771 (1689)
Q Consensus 753 ~~pv~~~aPTGsGKT~~~l 771 (1689)
..++.+.-|+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3578888999999998754
No 495
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=20.15 E-value=67 Score=44.37 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=29.9
Q ss_pred EEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchh
Q psy14582 501 LLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS 547 (1689)
Q Consensus 501 Lv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtre 547 (1689)
+|.|+-|||||.+.+-=|...+.... .+.++++++|...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~--------~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAP--------FGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCT--------TSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC--------CCCcEEEEecCcc
Confidence 78999999999998877777665421 3347999988764
No 496
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=20.10 E-value=2.2e+02 Score=34.03 Aligned_cols=42 Identities=19% Similarity=0.167 Sum_probs=23.1
Q ss_pred eeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchhHHH
Q psy14582 756 VSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ 806 (1689)
Q Consensus 756 v~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~L~~ 806 (1689)
+.+..|-+.|||......++..... .++..+++++|++.-+.
T Consensus 181 ~vi~~sRq~GKT~l~a~~~l~~a~~---------~~g~~v~~vA~t~~qA~ 222 (385)
T 2o0j_A 181 TVCNLSRQLGKTTVVAIFLAHFVCF---------NKDKAVGILAHKGSMSA 222 (385)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHHHS---------SSSCEEEEEESSHHHHH
T ss_pred EEEEEcCcCChhHHHHHHHHHHHHh---------CCCCeEEEEeCCHHHHH
Confidence 5667788899998655433332211 12345566666555443
No 497
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=20.03 E-value=37 Score=44.60 Aligned_cols=18 Identities=39% Similarity=0.695 Sum_probs=16.0
Q ss_pred cEEEEccCCCChHHHHHH
Q psy14582 499 NLLLCAPTGAGKTNVALL 516 (1689)
Q Consensus 499 nvLv~APTGSGKT~a~lL 516 (1689)
++|+++|||+|||..+-.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~a 540 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARA 540 (758)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 599999999999988754
No 498
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=20.00 E-value=39 Score=36.42 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCChHHHH
Q psy14582 496 SDENLLLCAPTGAGKTNVA 514 (1689)
Q Consensus 496 ~g~nvLv~APTGSGKT~a~ 514 (1689)
.|.-+.+.+|+|||||-.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667789999999999654
Done!