RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14582
(1689 letters)
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 559 bits (1442), Expect = 0.0
Identities = 137/761 (18%), Positives = 270/761 (35%), Gaps = 173/761 (22%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ-------------- 806
P +GKT +A + M+ I K +Y+ P+++L +
Sbjct: 47 PTASGKTLIAEIAMVHRILTQ----------GGKAVYIVPLKALAEEKFQEFQDWEKIGL 96
Query: 807 ---EMVGNFGK-------------------------------------DEIHLLHD-ERG 825
G++ DEIHL+ +RG
Sbjct: 97 RVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRG 156
Query: 826 PVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVAL 885
LE ++A + +++GLSAT+ N +++A L + + +RPV L
Sbjct: 157 ATLEVILAHMLGK-------AQIIGLSATIGNPEELAEWLNAE------LIVSDWRPVKL 203
Query: 886 EQQYIG----VTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDM 941
+ E ++ RF ++VY+ + + L+FV+ R++ + A +
Sbjct: 204 RRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKK---KGALIFVNMRRKAERVALELSKK 260
Query: 942 CLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLF 1001
T + A E+ + + N +L + G A HHAG+ R +R LVE+ F
Sbjct: 261 VKSLLTKPEI----RALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316
Query: 1002 ADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTV 1061
I+ +V+T TL+ G+ N PA V
Sbjct: 317 RKGIIKAVVATPTLSAGI-----------------------------------NTPAFRV 341
Query: 1062 IIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQ--YYLSLLN 1119
II+ Y+ + ++V QMLGRAGRP+YD GEG++++ + + +
Sbjct: 342 IIRDIWRYSD--FGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFG 399
Query: 1120 HQLPVESQMI--SKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDA 1177
+ SQ+ S L + A I +++ + ++ T+ + + Y +
Sbjct: 400 KPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQR---KDTYSLE--- 453
Query: 1178 LKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYN 1237
+ I L + I+ ++ LG + Y T +
Sbjct: 454 ------------EKIRNILYFLLENEFIEI-SLEDKIRPLSLGIRTAKLYIDPYTAKMFK 500
Query: 1238 QLLKPTLSEI---ELFRVFSLSGEFRHITVREEEKLELQKLMERAP-------------I 1281
++ + + +F + SL+ + + E L++
Sbjct: 501 DKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYD 560
Query: 1282 PIKESTDEPSAKVNILLQAYISQLKLEGFA-----LMSDMVFVTQSAARLMRAIFEIVLY 1336
P E + K ++L A+I+++ D+ + ++A L+ ++ EI
Sbjct: 561 PYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKV 620
Query: 1337 RGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEI 1396
G ++ D +L V + + + PL Q + + + F + D+
Sbjct: 621 LGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGF--RSIEDISQARP 678
Query: 1397 GELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVEL 1437
EL+++ +G + + +F + +P TL L
Sbjct: 679 EELLKIEGIGVKTVEAIFKFLGKNVKISEKPRKS-TLDYFL 718
Score = 166 bits (421), Expect = 3e-42
Identities = 46/262 (17%), Positives = 94/262 (35%), Gaps = 87/262 (33%)
Query: 467 KLPRYVQHAFED--FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGK 524
++ ++ ++ ++ Q+ KS + +N L+ PT +GKT +A + M+ I
Sbjct: 7 RVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT 66
Query: 525 HINADGTINADEFKIIYVAPMRSLVQ-----------------EMVGNFGK--------- 558
K +Y+ P+++L + G++
Sbjct: 67 Q----------GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYD 116
Query: 559 ----------------------------DEIHLLHD-ERGPVLEALIARTIRNIEATQED 589
DEIHL+ +RG LE ++A +
Sbjct: 117 IIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGK------- 169
Query: 590 VRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIG----VTEKKALKRF 645
+++GLSAT+ N +++A L + + +RPV L + E ++ RF
Sbjct: 170 AQIIGLSATIGNPEELAEWLNAE------LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRF 223
Query: 646 QVMNDIVYEKVMEHAGRNQLLV 667
++VY+ + + L+
Sbjct: 224 SSWEELVYDAIRKK---KGALI 242
Score = 81.4 bits (201), Expect = 1e-15
Identities = 14/132 (10%), Positives = 39/132 (29%), Gaps = 7/132 (5%)
Query: 1448 KLHGGSEGFWILVEDVDS---EAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSK 1504
E + + D+ A L+ + ++ G + + + +
Sbjct: 585 PEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREE 644
Query: 1505 DSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPN 1564
L QLP + G ++ DI + ++ L++ + + + +F
Sbjct: 645 LIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAIFKF----LG 700
Query: 1565 IELSYEVLNKDR 1576
+ +
Sbjct: 701 KNVKISEKPRKS 712
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 510 bits (1316), Expect = e-163
Identities = 140/768 (18%), Positives = 274/768 (35%), Gaps = 174/768 (22%)
Query: 720 DDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIG 779
+ + + V + + + ++ + + +P AGKT +A + M++E
Sbjct: 7 AESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI 66
Query: 780 KHINADGTINADEFKIIYVAPMRSLVQ-----------------EMVGNFGK-------- 814
K K +YV P+R+L G++
Sbjct: 67 KG-----------GKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDC 115
Query: 815 -----------------------------DEIHLLHDE-RGPVLEALIARTIRNIEATQE 844
DEIHLL E RG LE L+ + R +
Sbjct: 116 DIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR----MNK 171
Query: 845 DVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALK-RFQV 903
+R++GLSAT PN ++A L Y+ + +RPV L + + + F
Sbjct: 172 ALRVIGLSATAPNVTEIAEWLDAD------YYVSDWRPVPLVEGVLCEGTLELFDGAFST 225
Query: 904 MNDIVYEKVMEH--AGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEV 961
+ +E+++E A +LVF +R+ KTA + + + +
Sbjct: 226 SRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKA------- 278
Query: 962 LRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNL 1021
+ E + + +L + + G A HHAG+ R +VED F +I+V+V+T TLA GV
Sbjct: 279 ILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGV-- 336
Query: 1022 PAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGA 1081
NLPA VI++ ++ G +
Sbjct: 337 ---------------------------------NLPARRVIVRSLYRFD---GYSKRIKV 360
Query: 1082 LDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLS--LLNHQLPVESQM--ISKLPDMLN 1137
+ QM GRAGRP D +GE ++I + + + + + S++ + L
Sbjct: 361 SEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSL 420
Query: 1138 AEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAAL 1197
+ I G + L++ + T+ + + + + +
Sbjct: 421 SIICDGYAKTLEELEDFFADTFFFKQNEISL--------------------SYELERVVR 460
Query: 1198 HLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLL-KPTLSEIELFRVFSLS 1256
LE G++ ++ H+ T+LG + S Y T ++ +L + LS+I + +
Sbjct: 461 QLENWGMVV---EAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRT 517
Query: 1257 GEFRHITVREEEK------LELQKLMERAPIP--IKESTDEPSAKVNILLQAYISQLKLE 1308
+ +TVR+ + L+K + P ++ K + L+ +I + +
Sbjct: 518 PDMERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDED 577
Query: 1309 GFALM-----SDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSP 1363
D+ + ++A L A+ I G ++ L + + + + +
Sbjct: 578 EICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTSVSG----LTERIKHGVKEELLE 633
Query: 1364 LRQFRKIPEEIIKKIEKKNFPWERLYDLG--PNEIGELIRVPKLGKTI 1409
L + R I +K+ D+ ++ LI + + +
Sbjct: 634 LVRIRHIGRVRARKLYNAGI--RNAEDIVRHREKVASLI-GRGIAERV 678
Score = 167 bits (425), Expect = 7e-43
Identities = 59/269 (21%), Positives = 97/269 (36%), Gaps = 86/269 (31%)
Query: 463 VPIDKLPRYVQHAFED------FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALL 516
+ +++L + + L Q+ + S +NLLL PT AGKT +A +
Sbjct: 1 MKVEELAESISSYAVGILKEEGIEELFPPQAE-AVEKVFSGKNLLLAMPTAAGKTLLAEM 59
Query: 517 CMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ-----------------EMVGNFGK- 558
M++E K K +YV P+R+L G++
Sbjct: 60 AMVREAIKG-----------GKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESR 108
Query: 559 ------------------------------------DEIHLLHDE-RGPVLEALIARTIR 581
DEIHLL E RG LE L+ + R
Sbjct: 109 DEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR 168
Query: 582 NIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKA 641
+ +R++GLSAT PN ++A L Y+ + +RPV L + + +
Sbjct: 169 ----MNKALRVIGLSATAPNVTEIAEWLDAD------YYVSDWRPVPLVEGVLCEGTLEL 218
Query: 642 LK-RFQVMNDIVYEKVMEH--AGRNQLLV 667
F + +E+++E A +LV
Sbjct: 219 FDGAFSTSRRVKFEELVEECVAENGGVLV 247
Score = 64.4 bits (157), Expect = 2e-10
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 5/79 (6%)
Query: 1467 AIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKG 1526
A L A + G S + + I + + L ++ H ++ G
Sbjct: 597 AEWLSNAMNRIAEEVGNTS----VSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAG 652
Query: 1527 VETVFDIMELEDDDRLRLL 1545
+ DI+ + L+
Sbjct: 653 IRNAEDIVR-HREKVASLI 670
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 505 bits (1302), Expect = e-160
Identities = 154/731 (21%), Positives = 262/731 (35%), Gaps = 182/731 (24%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL---------------- 804
P G+GKT +A + ++ + K+ K IYV P+R+L
Sbjct: 54 PTGSGKTLIAEMGIISFLLKN----------GGKAIYVTPLRALTNEKYLTFKDWELIGF 103
Query: 805 -VQEMVGNFGK-------------------------------------DEIHLLHD-ERG 825
V G++ DE+H L+D ERG
Sbjct: 104 KVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERG 163
Query: 826 PVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVAL 885
PV+E++ R R L+ LSAT+ NYK +A L G ++RPV L
Sbjct: 164 PVVESVTIRAKR--------RNLLALSATISNYKQIAKWL------GAEPVATNWRPVPL 209
Query: 886 EQQYIGVTEKK----------ALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTA 935
+ I KK K+ + I+ + + Q+LVF +SRK TA
Sbjct: 210 IEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTA 269
Query: 936 RAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRT 995
I + L E ++ + E + L+ L+ G A HHAG+++ R
Sbjct: 270 LKIANYMNFVSLDENALSEILKQLDDIE-EGGSDEKELLKSLISKGVAYHHAGLSKALRD 328
Query: 996 LVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVN 1055
L+E+ F R I+V+V+T TLA GV N
Sbjct: 329 LIEEGFRQRKIKVIVATPTLAAGV-----------------------------------N 353
Query: 1056 LPAHTVIIKGTQIYNPE-KGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSEL--- 1111
LPA TVII +N + G + E+ ++ QM GRAGRP +D GE +++ E
Sbjct: 354 LPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDR 413
Query: 1112 QYYLSLLNHQLPVESQMISK--LPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPN 1169
+ +L+ P+ES++ S+ L + + K + + L +++
Sbjct: 414 VFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVD--- 470
Query: 1170 LYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCT 1229
A L IK + +T G+ + Y
Sbjct: 471 --------------------VYFDRAIRWLLEHSFIKEE--GNTFALTNFGKRVADLYIN 508
Query: 1230 HETMATYNQLLKPTLSEIE--LFRVFSLSGEFRHITVREEEKLELQKLMERAP----IPI 1283
T + L+ + E + + + + ++V E+ EL +L+E I
Sbjct: 509 PFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEE 568
Query: 1284 KESTDEPSAKVNILLQAYISQLKLEGFALMS----------DMVFVTQSAARLMRAIFEI 1333
DE S +N L A I + ++ + D+ + ++ L + + +
Sbjct: 569 PYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHL 628
Query: 1334 VLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGP 1393
+ ADK L V + + + L Q + + + LY+ G
Sbjct: 629 SRELKLNEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARL----------LYNNGI 678
Query: 1394 NEIGELIRVPK 1404
E+G+++ P
Sbjct: 679 KELGDVVMNPD 689
Score = 189 bits (483), Expect = 4e-50
Identities = 70/281 (24%), Positives = 104/281 (37%), Gaps = 93/281 (33%)
Query: 456 MGPDETLVPID--KLPRYVQHAFED--FKTLNRIQSRLCKSALESDENLLLCAPTGAGKT 511
MG + +PI+ KLP V + K LN Q+ K L LLL +PTG+GKT
Sbjct: 1 MGLELEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKT 60
Query: 512 NVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL-----------------VQEMVG 554
+A + ++ + K+ K IYV P+R+L V G
Sbjct: 61 LIAEMGIISFLLKN----------GGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSG 110
Query: 555 NFGK-------------------------------------DEIHLLHD-ERGPVLEALI 576
++ DE+H L+D ERGPV+E++
Sbjct: 111 DYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVT 170
Query: 577 ARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGV 636
R R L+ LSAT+ NYK +A L G ++RPV L + I
Sbjct: 171 IRAKR--------RNLLALSATISNYKQIAKWL------GAEPVATNWRPVPLIEGVIYP 216
Query: 637 TEKK----------ALKRFQVMNDIVYEKVMEHAGRNQLLV 667
KK K+ + I+ + + Q+LV
Sbjct: 217 ERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLV 257
Score = 41.6 bits (98), Expect = 0.002
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 1/97 (1%)
Query: 1467 AIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKG 1526
L + + A + + + + L Q+ + G
Sbjct: 618 MDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNNG 677
Query: 1527 VETVFDIMELEDD-DRLRLLQLSESQLADVARFCNRY 1562
++ + D++ D L +L E + + AR NR+
Sbjct: 678 IKELGDVVMNPDKVKNLLGQKLGEKVVQEAARLLNRF 714
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics,
translocase, northeast structural genomics consortium,
PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Length = 339
Score = 218 bits (555), Expect = 4e-63
Identities = 189/328 (57%), Positives = 233/328 (71%), Gaps = 25/328 (7%)
Query: 1359 QSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPK 1418
S++ + R + E I E +N P D ++ + + + H
Sbjct: 37 MSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDP-HVKTN 95
Query: 1419 LELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQACVDVL 1478
L L H+ + +S + Q D E++ S+AIRLIQACVDVL
Sbjct: 96 LLLQAHLS---------RMQLSAELQSD-------------TEEILSKAIRLIQACVDVL 133
Query: 1479 SSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELED 1538
SSNGWLSPA+AAME+AQM+TQAMWSKDSYLKQLPHF ++ IKRCT+KGVE+VFDIME+ED
Sbjct: 134 SSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMED 193
Query: 1539 DDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVVVNLDREDEVTGP 1598
++R LLQL++SQ+ADVARFCNRYPNIELSYEV++KD I SG V V+V L+RE+EVTGP
Sbjct: 194 EERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGP 253
Query: 1599 VIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIKLDFVAPNPGHHSYALYFMS 1658
VIAP +PQKREEGWWVVIGD K+NSL+SIKRLTLQQKAK+KLDFVAP G H+Y LYFMS
Sbjct: 254 VIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMS 313
Query: 1659 DAYLGCDQEYKFSIDVSEYYSGGESDSD 1686
DAY+GCDQEYKFS+DV E + +SDSD
Sbjct: 314 DAYMGCDQEYKFSVDVKE--AETDSDSD 339
Score = 182 bits (463), Expect = 9e-51
Identities = 67/319 (21%), Positives = 136/319 (42%), Gaps = 16/319 (5%)
Query: 1203 GLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHI 1262
G + + LG IA++YY + T+ ++ L L + S + E+ +I
Sbjct: 2 GHHHHHHSHMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENI 61
Query: 1263 TVREEEKLELQKLMERAPIPIKEST-DEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQ 1321
+R E L++L ++ P + ++P K N+LLQA++S+++L L SD +
Sbjct: 62 PIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILS 120
Query: 1322 SAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKK 1381
A RL++A +++ GW A A+ L +MV + MW S L+Q E IK+ K
Sbjct: 121 KAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDK 180
Query: 1382 NFP-WERLYDLGPNEIGELIRV-PKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTI 1439
+ ++ E L+++ + ++ +++P +EL+ + + +
Sbjct: 181 GVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVV 240
Query: 1440 SPDFQWDEKLHGG----------SEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVA 1489
+ +E++ G EG+W+++ D S ++ I+ L +
Sbjct: 241 LVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRL--TLQQKAKVKLDFV 298
Query: 1490 AMEVAQMITQAMWSKDSYL 1508
A + D+Y+
Sbjct: 299 APATGAHNYTLYFMSDAYM 317
Score = 46.1 bits (108), Expect = 6e-05
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 690 SEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIG 749
EG+W+++ D S ++ + L+ VK Y L +SD ++G
Sbjct: 264 EEGWWVVIGDAKSNSLISIKRLTLQ-----QKAKVKLDFVAPATGAHNYTLYFMSDAYMG 318
Query: 750 AETILPVSFRLP 761
+ S +
Sbjct: 319 CDQEYKFSVDVK 330
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA
helicase, rnpase, RNA unwindase, molecular model mRNA
splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A*
3hib_A
Length = 328
Score = 198 bits (504), Expect = 2e-56
Identities = 103/322 (31%), Positives = 168/322 (52%), Gaps = 25/322 (7%)
Query: 1355 RRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVH 1414
+ S+S + + + +E ++ P + G+ + KL K +
Sbjct: 29 QSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRK---------GDRALLVKLSKRLPLRFP 79
Query: 1415 QFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQAC 1474
+ + + L + DFQ D K IL + + LI
Sbjct: 80 EHTSSGSVSFKVFLLLQAYFSRLELPVDFQNDLK--------DIL-----EKVVPLINVV 126
Query: 1475 VDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIM 1534
VD+LS+NG+L+ A AM++AQM+ Q +W D+ L+Q+PHFN I+++C E VETV+DIM
Sbjct: 127 VDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYDIM 185
Query: 1535 ELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVVVNLDREDE 1594
LED++R +L L++SQLA VA F N YPN+EL+Y + N D + SG + + L R+ E
Sbjct: 186 ALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRDVE 245
Query: 1595 VTGP-VIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKA-KIKLDFVAPNPGHHSY 1652
V + YP + E WW+V+G+ L +IK++TL ++ + +L+F P G H+
Sbjct: 246 PENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPTSGKHNL 305
Query: 1653 ALYFMSDAYLGCDQEYKFSIDV 1674
++ + D+YL D+E F I+V
Sbjct: 306 TIWCVCDSYLDADKELSFEINV 327
Score = 160 bits (404), Expect = 4e-43
Identities = 66/313 (21%), Positives = 130/313 (41%), Gaps = 18/313 (5%)
Query: 1211 SGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKL 1270
+ + G IASHY + T+ ++ L T + + V S + EF + +R+ ++
Sbjct: 6 TEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRA 65
Query: 1271 ELQKLMERAPI--PIKESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMR 1328
L KL +R P+ P S+ S KV +LLQAY S+L+L +D+ + + L+
Sbjct: 66 LLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELP-VDFQNDLKDILEKVVPLIN 124
Query: 1329 AIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFP-WER 1387
+ +I+ G+ A A+ L +M+ + +W +PLRQ +I++K ++ N
Sbjct: 125 VVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYD 183
Query: 1388 LYDLGPNEIGELIRV-PKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWD 1446
+ L E E++ + + +V+ +P +EL + V+ I+ D
Sbjct: 184 IMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRD 243
Query: 1447 EKLHGG-----------SEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQ 1495
+ E +W+++ +V + + I+ + + +
Sbjct: 244 VEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQY-ELEFDTPTSGK 302
Query: 1496 MITQAMWSKDSYL 1508
DSYL
Sbjct: 303 HNLTIWCVCDSYL 315
Score = 49.9 bits (118), Expect = 4e-06
Identities = 13/114 (11%), Positives = 33/114 (28%), Gaps = 5/114 (4%)
Query: 648 MNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGG-SEGFWILVEDVDSEVVL 706
+ + +G Q + L ++ EK E +W+++ +V + +
Sbjct: 218 LTYSLNNSDSLISGVKQKITIQLTRDVEPENLQVTSEKYPFDKLESWWLVLGEVSKKELY 277
Query: 707 HHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRL 760
+ L + + V D ++ A+ L +
Sbjct: 278 AIKKVTLNKETQQ----YELEFDTPTSGKHNLTIWCVCDSYLDADKELSFEINV 327
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A
{Saccharomyces cerevisiae}
Length = 1010
Score = 93.3 bits (231), Expect = 4e-19
Identities = 70/348 (20%), Positives = 120/348 (34%), Gaps = 98/348 (28%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DE+H + D ERG V E I + VR V LSAT+PN + A +
Sbjct: 199 DEVHYMRDKERGVVWEETIILL-------PDKVRYVFLSATIPNAMEFAEWICKIHSQPC 251
Query: 874 FYFDNSFRPVALEQQYIGVTEKKALK---------------------------------- 899
+FRP L+
Sbjct: 252 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSR 311
Query: 900 ----------RFQVMNDIVYEKVMEHAGRNQLL---VFVHSRKETGKTARAIRDMCL--- 943
+ K+++ + + VF S+++ + A + +
Sbjct: 312 GKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSD 371
Query: 944 -EKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFA 1002
EK+ L + A + E Q+K + LL G IHH+G+ + + ++E LF
Sbjct: 372 DEKEALTKIFNNAIALLPETDRELPQIK--HILPLLRRGIGIHHSGLLPILKEVIEILFQ 429
Query: 1003 DRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVI 1062
+ ++VL +T T + G+N+PA TVV
Sbjct: 430 EGFLKVLFATETFSIGLNMPAKTVV----------------------------------- 454
Query: 1063 IKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSE 1110
+ ++ ++ RWV G + +QM GRAGR D +G +++ +
Sbjct: 455 FTSVRKWDGQQFRWVSGG--EYIQMSGRAGRRGLDDRGIVIMMIDEKM 500
Score = 56.0 bits (134), Expect = 1e-07
Identities = 50/252 (19%), Positives = 86/252 (34%), Gaps = 68/252 (26%)
Query: 431 LPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNRIQSRLC 490
+ + ++ G + + P+ PI + R + F L+ Q
Sbjct: 37 TNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFT-LDPFQDTAI 95
Query: 491 KSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLV- 549
++ E++L+ A T AGKT VA + Q + ++ ++IY +P+++L
Sbjct: 96 S-CIDRGESVLVSAHTSAGKTVVAEYAIAQSL-----------KNKQRVIYTSPIKALSN 143
Query: 550 ---QEMVGNFGK-------------------------------------------DEIHL 563
+E++ FG DE+H
Sbjct: 144 QKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY 203
Query: 564 LHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDN 622
+ D ERG V E I + VR V LSAT+PN + A +
Sbjct: 204 MRDKERGVVWEETIIL-------LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYT 256
Query: 623 SFRPVALEQQYI 634
+FRP L+
Sbjct: 257 NFRPTPLQHYLF 268
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix,
antiparallel-coiled-COI domain, ATP-binding, helicase,
hydrolase; 3.39A {Saccharomyces cerevisiae}
Length = 1108
Score = 92.6 bits (229), Expect = 8e-19
Identities = 70/345 (20%), Positives = 120/345 (34%), Gaps = 98/345 (28%)
Query: 815 DEIHLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
DE+H + D ERG V E I + VR V LSAT+PN + A +
Sbjct: 297 DEVHYMRDKERGVVWEETIILL-------PDKVRYVFLSATIPNAMEFAEWICKIHSQPC 349
Query: 874 FYFDNSFRPVALEQQYIGVTEKKALK---------------------------------- 899
+FRP L+
Sbjct: 350 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSR 409
Query: 900 ----------RFQVMNDIVYEKVMEHAGRNQLL---VFVHSRKETGKTARAIRDMCL--- 943
+ K+++ + + VF S+++ + A + +
Sbjct: 410 GKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSD 469
Query: 944 -EKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFA 1002
EK+ L + A + E Q+K + LL G IHH+G+ + + ++E LF
Sbjct: 470 DEKEALTKIFNNAIALLPETDRELPQIK--HILPLLRRGIGIHHSGLLPILKEVIEILFQ 527
Query: 1003 DRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVI 1062
+ ++VL +T T + G+N+PA TVV
Sbjct: 528 EGFLKVLFATETFSIGLNMPAKTVV----------------------------------- 552
Query: 1063 IKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITN 1107
+ ++ ++ RWV G + +QM GRAGR D +G +++ +
Sbjct: 553 FTSVRKWDGQQFRWVSGG--EYIQMSGRAGRRGLDDRGIVIMMID 595
Score = 57.2 bits (137), Expect = 4e-08
Identities = 62/344 (18%), Positives = 113/344 (32%), Gaps = 81/344 (23%)
Query: 339 SSQSESERQKLRDTMSEDPALAKILRQLDTGKNEDGDANDSADARQSTSIRHQMGQGGGD 398
S+ ++ + DT L + E+ N + +S + +
Sbjct: 56 SNGEKNADTNVGDTPDHTQDKKHGLEEEKEEHEENNSENKKIKSNKSKT----EDKNKKV 111
Query: 399 GVAVVAGTRQVLDLEDLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGP 458
V V+A + + ++ S G + + ++ G + + P
Sbjct: 112 VVPVLADSFEQEASREVDASKG---------LTNSETLQVEQDGKVRLSHQVRHQVALPP 162
Query: 459 DETLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCM 518
+ PI + R + F L+ Q ++ E++L+ A T AGKT VA +
Sbjct: 163 NYDYTPIAEHKRVNEARTYPFT-LDPFQDTAIS-CIDRGESVLVSAHTSAGKTVVAEYAI 220
Query: 519 LQEIGKHINADGTINADEFKIIYVAPMRSLV----QEMVGNFGK---------------- 558
Q + ++ ++IY +P+++L +E++ FG
Sbjct: 221 AQSL-----------KNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGC 269
Query: 559 ---------------------------DEIHLLHD-ERGPVLEALIARTIRNIEATQEDV 590
DE+H + D ERG V E I + V
Sbjct: 270 LVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIIL-------LPDKV 322
Query: 591 RLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYI 634
R V LSAT+PN + A + +FRP L+
Sbjct: 323 RYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLF 366
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB:
4a4k_A
Length = 997
Score = 83.0 bits (204), Expect = 6e-16
Identities = 66/329 (20%), Positives = 112/329 (34%), Gaps = 49/329 (14%)
Query: 812 FGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPET 871
+ K E+ + ++ LEA + +
Sbjct: 223 WAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRD 282
Query: 872 GLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDI----VYEKVMEHAGRNQLL---VF 924
G NS R A G + KR D + +++ + + +LL VF
Sbjct: 283 GRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVF 342
Query: 925 VHSRKETGKTARAIRDMCLEKDTLGQFLREG-SASMEVLRTEADQVKNG-ELRDLLPYGF 982
V S+K + A + + + + S+ L+ E + + R LL G
Sbjct: 343 VFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGI 402
Query: 983 AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQ 1042
A+HH G+ LP + L+E LF+ I+
Sbjct: 403 AVHHGGL-------------------------------LPIV----KELIEILFSKGFIK 427
Query: 1043 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG 1102
VL +T T A G+NLP TVI + ++ R + G + QM GRAGR D+ G
Sbjct: 428 VLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPG--EFTQMAGRAGRRGLDSTGTV 485
Query: 1103 VLITN---HSELQYYLSLLNHQLPVESQM 1128
+++ S + + ++SQ
Sbjct: 486 IVMAYNSPLSIATFKEVTMGVPTRLQSQF 514
Score = 43.3 bits (101), Expect = 9e-04
Identities = 39/193 (20%), Positives = 63/193 (32%), Gaps = 72/193 (37%)
Query: 493 ALESDENLLLCAPTGAGKTNVA--LLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ 550
LE +++ + A T AGKT VA + M K IY +P+++L
Sbjct: 50 HLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMT-------------KTIYTSPIKALSN 96
Query: 551 ----EMVGNFGK---------------------------------------------DEI 561
+ F DE+
Sbjct: 97 QKFRDFKETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEV 156
Query: 562 HLLHD-ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYF 620
H ++D +RG V E +I + V+ + LSAT+PN + A + + ++
Sbjct: 157 HYVNDQDRGVVWEEVII-------MLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVI 209
Query: 621 DNSFRPVALEQQY 633
RPV LE
Sbjct: 210 STPKRPVPLEINI 222
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 6e-12
Identities = 97/719 (13%), Positives = 201/719 (27%), Gaps = 230/719 (31%)
Query: 707 HHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGK 766
HH + + + K + VFE V +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFED-------AFVDN--------------------- 32
Query: 767 TNVALLCM-LQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERG 825
C +Q++ K I ++ +E I ++
Sbjct: 33 ----FDCKDVQDMPKSI-----LSKEEIDHIIMSKDA-------------------VSG- 63
Query: 826 PVLEALIARTIRNIEATQEDV--RLVGLSATLPNYKDVATLLRIKP-----ETGLF---- 874
R + + QE++ + V NYK + + ++ + T ++
Sbjct: 64 ------TLRLFWTLLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 875 ---YFDNS-FRP--VALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSR 928
Y DN F V+ Q Y+ + ++AL + +++ +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKL--RQALLELRPAKNVL----------------IDGV 158
Query: 929 KETGKT---ARAIRDMCLEKD--------TLGQFLREGS--ASMEVLRTEADQVKNGELR 975
+GKT ++ L + ++ L + D
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 976 DLLPYGFAIHHAGMTRVDRTLVEDLFADR-HIQVLVSTATLAWGVNLPAHTVVD-----R 1029
IH + + L + + L+ V+ +
Sbjct: 219 HSSNIKLRIHSI------QAELRRLLKSKPYENCLL---------------VLLNVQNAK 257
Query: 1030 TLVEDLFADRHIQVLVSTA----TLAWGVNLPAHTVIIKGTQIYNPEKG-----RWVELG 1080
+ F + ++L++T T H + + P++ ++++
Sbjct: 258 AW--NAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 1081 ALD-----------VLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSL-LNHQLPVESQ- 1127
D L ++ + R T + N +L + LN P E +
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 1128 ---MISKLPDMLNAEIVLGTVQNLKDAVTWLGYTY---------LYIRML----RAPNLY 1171
+S P +A I + + W L+ L +
Sbjct: 374 MFDRLSVFPP--SAHIPTILLSLI-----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 1172 GISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHE 1231
I E L+ + ALH RS + Y+ + Y+ +H
Sbjct: 427 SI-PSIYLE---LKVKLENE---YALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSH- 476
Query: 1232 TMATYNQLLKPTLSE-IELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEP 1290
++ L E + LFR+ L FR + E+K+ A I
Sbjct: 477 --IGHH-LKNIEHPERMTLFRMVFLD--FRFL----EQKIRHDSTAWNASGSI------- 520
Query: 1291 SAKVNILLQ-----AYISQLKLEGFALMSDMV-FVTQSAARLMRAIFEIVLYRGWAQLA 1343
+N L Q YI + L++ ++ F+ + L+ + + +L ++A
Sbjct: 521 ---LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL-----RIA 571
Score = 69.5 bits (169), Expect = 9e-12
Identities = 96/644 (14%), Positives = 183/644 (28%), Gaps = 175/644 (27%)
Query: 351 DTMSEDPALAKILRQLDTGKNEDGDANDSADARQ----STSIRHQMGQGGGDGVAVVAGT 406
+T IL + ++ D D D + I H + V+GT
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK-----DAVSGT 64
Query: 407 RQVLD-LEDLQFSSGSHFMSN--------------KRCELPDGSFRKQRKGYEEVHVPAL 451
++ L Q F+ P + Y E
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM----MTRMYIEQR---- 116
Query: 452 KPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKT 511
+ D + + R + +++ L + L +N+L+ G+GKT
Sbjct: 117 --DRLYNDNQVFAKYNVSR--------LQPYLKLRQALLE--LRPAKNVLIDGVLGSGKT 164
Query: 512 NVA------------------------------LLCMLQEIGKHINADGTINADEFKIIY 541
VA +L MLQ++ I+ + T +D I
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI- 223
Query: 542 VAPMRSLVQEMVGNFGKDEI-HLLHDERGP-------------VLEA-------LIARTI 580
+R + + E+ LL + A L+ T
Sbjct: 224 --KLRI-------HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL--TT 272
Query: 581 RNIEATQEDVRLVGLSATLPNYKDVATLLRIKPET-GLF--YFDNSFR----------PV 627
R + T D L + T + + L E L Y D + P
Sbjct: 273 RFKQVT--DF-LSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 628 ALEQQYIGVTEKKALKRFQVMNDIVYEKVME--HAGRNQLLVSTLR---VELTISPDFQW 682
L I + + L + + +K+ + N L + R L++ P
Sbjct: 329 RLSI--IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP--- 383
Query: 683 DEKLHGGSEG----FWILVEDVDSEVVLH--HEYFLLKSRYATDDHVVKFFVPVFEPLPP 736
+ W V D VV++ H+Y L++ + + + +P
Sbjct: 384 SAHI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP--KESTIS--------IPS 430
Query: 737 QYF-LRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCM----LQEIGKHI-NADGTINA 790
Y L++ + + + +P+ ++ + IG H+ N +
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 791 DEFKIIYV------APMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQE 844
F+++++ +R N ++ L + + I E
Sbjct: 491 TLFRMVFLDFRFLEQKIRH--DSTAWNASGSILNTLQQLK--FYKPYICDNDPKYERLVN 546
Query: 845 DVR--LVGLSATLPNYKDVATLLRI--KPETGLFYFDNSFRPVA 884
+ L + L K LLRI E F+ + + V
Sbjct: 547 AILDFLPKIEENLICSKY-TDLLRIALMAEDE-AIFEEAHKQVQ 588
Score = 55.6 bits (133), Expect = 2e-07
Identities = 95/645 (14%), Positives = 186/645 (28%), Gaps = 187/645 (28%)
Query: 105 KTQETRQTYEVLLSFIQEALGDQPRDILCGAADEVLTVLKNDRMKEKEKKKETENLLGSL 164
+T E + Y+ +LS ++A + C +V D K K+E ++++ S
Sbjct: 10 ETGEHQYQYKDILSVFEDAF---VDNFDC---KDVQ-----DMPKSILSKEEIDHIIMSK 58
Query: 165 -AEER----FALLVNLGKKITD-F--GAEQK------STTAEENIDDTYGINVQFEESED 210
A F L++ +++ F + S E + + + E D
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS-MMTRMYIEQRD 117
Query: 211 E--DDEDTFG-----------EVREA-EELDDEGEEARVNTAIHAENLAGGEDAEGTGRK 256
+D F ++R+A EL N I G G+G
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK-----NVLID-----GV---LGSG-- 162
Query: 257 KDKSLHPLDIDAYWLQRRLSKIYDDAMVSQAKAGEV--LNILKSAGDDRDAENQLVLLLG 314
K+ W+ + V ++ LN+ + E
Sbjct: 163 --KT---------WV---ALDVCLSYKVQCKMDFKIFWLNL----KNCNSPE-------- 196
Query: 315 YDCFDFIKMLKK-YRQMIL-YCTLLASSQS-----ESERQKLRDTMSEDP---AL----- 359
++ML+K Q+ + + S + S + +LR + P L
Sbjct: 197 ----TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 360 ---AKILRQLD--------TGKNEDGDANDSADARQSTSIRHQMGQGGGDGVAVVAGTRQ 408
AK + T + D +A + H M + +++ +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL---K 309
Query: 409 VLDL--EDL--QFSSGS----------------------HFMSNKRCELPDGSFRKQ--- 439
LD +DL + + + H +K + + S
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 440 --RKGYEE-------VHVPA--LKP--KPMGPDETLVPIDKLPRY---VQHAFEDFKTLN 483
RK ++ H+P L + + +V ++KL +Y + E ++
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 484 RIQSRLCKSALESDE---------NLLLCAPTGAGKTNVALLCMLQEIGKHI-NADGTIN 533
I L N+ + IG H+ N +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 534 ADEFKIIYV------APMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQ 587
F+++++ +R N ++ L + + I E
Sbjct: 490 MTLFRMVFLDFRFLEQKIRH--DSTAWNASGSILNTLQQLK--FYKPYICDNDPKYERLV 545
Query: 588 EDVR--LVGLSATLPNYKDVATLLRI--KPETGLFYFDNSFRPVA 628
+ L + L K LLRI E F+ + + V
Sbjct: 546 NAILDFLPKIEENLICSKY-TDLLRIALMAEDE-AIFEEAHKQVQ 588
Score = 49.9 bits (118), Expect = 8e-06
Identities = 44/314 (14%), Positives = 104/314 (33%), Gaps = 66/314 (21%)
Query: 82 TRMKG-ATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFIQEALGDQPRDI--------- 131
TR K LS + + + T + +LL ++ D PR++
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 132 LCGAA--DEVLTVLKNDRMKEKEKKKET-----ENLLGSLAEERFALLVNLGKKITDFGA 184
+ + D + T N + +K L + + F L + F
Sbjct: 332 IIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-----V--F-- 381
Query: 185 EQKSTTAEENIDDTYG-INVQFEESEDEDDEDTFGEVREAEELDDEGEEARVNTAIHAEN 243
+ +++ + + D ++ + ++ + +E+ + +I +
Sbjct: 382 -------PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--SIPSIY 432
Query: 244 LAGGEDAEGTGRKKDKSLHPLDIDAYWLQRR-----LSKIYDDAMVSQAKAGEVLNI--- 295
L + + + + +LH +D Y + + L Y D +I
Sbjct: 433 L----ELKVK-LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-------HIGHH 480
Query: 296 LKSAG-DDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASSQSE-SERQKLRDTM 353
LK+ +R ++V L D F F++ +K R S + + + + +
Sbjct: 481 LKNIEHPERMTLFRMVFL---D-FRFLE--QKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 354 SE-DPALAKILRQL 366
+ DP +++ +
Sbjct: 535 CDNDPKYERLVNAI 548
Score = 48.7 bits (115), Expect = 2e-05
Identities = 44/291 (15%), Positives = 84/291 (28%), Gaps = 84/291 (28%)
Query: 1367 FRKIPEEIIKK----IEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKY--------VH 1414
EE+++K + + N+ + L I R P + ++
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKF--LMS----PIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 1415 QFPKLELATHIQPITR-----STLRVELTISPDFQWDEKLHG--GSEGFWILVEDV--DS 1465
F K + + +QP + LR + + G GS G + DV
Sbjct: 125 VFAKYNV-SRLQPYLKLRQALLELRPAKNVL--------IDGVLGS-GKTWVALDVCLSY 174
Query: 1466 EAIRLIQACVDVLSSNG--WLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCT 1523
+ V WL+ + S ++ L+ L I T
Sbjct: 175 K--------VQCKMDFKIFWLN-------LKNCN-----SPETVLEMLQKLLYQIDPNWT 214
Query: 1524 EKGVETVFDIMELED-DDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSS 1582
+ + + + LR L S+ Y N VL + + +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSK-----------PYEN---CLLVL--LNVQNAKA 258
Query: 1583 VN-------VVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLS 1626
N +++ R +VT + A + + + + SLL
Sbjct: 259 WNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Score = 47.9 bits (113), Expect = 4e-05
Identities = 101/629 (16%), Positives = 203/629 (32%), Gaps = 146/629 (23%)
Query: 1106 TNHSELQY-YLSLLNHQLP--VESQMISKLPDML-----NAEIVLGTVQNLKDAVTWLGY 1157
E QY Y +L+ V++ + DM EI + KDAV+ G
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDAVS--GT 64
Query: 1158 TYLYIRMLRAPN--LYGISHDALKED-PLL------ECHRADLIHTA------ALHLERS 1202
L+ +L + + L+ + L E + ++ L+ +
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 1203 GLIKYD--RKSGHMQVTE-LGRIASHYYCTHETMA----TYNQLLKPTLSEIEL-----F 1250
KY+ R ++++ + L + + + T+ + ++ F
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMDF 182
Query: 1251 RVFSLSGEFRHITVREEEKLE-LQKLMERAPIPIKESTDEPSAKVNILLQAYISQLKLEG 1309
++F L+ ++ E LE LQKL+ + +D S NI L+ I ++ E
Sbjct: 183 KIFWLN--LKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSS---NIKLR--IHSIQAEL 234
Query: 1310 FALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSL-CKMV----DRRMWQSMSPL 1364
L+ + + +VL A A +L CK++ +++ +S
Sbjct: 235 RRLLKSKPYE--------NCL--LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 1365 RQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELATH 1424
+ L P+E+ L L K + P+ L T+
Sbjct: 285 TTTHISLDHHSMT-------------LTPDEVKSL-----LLKYLDCRPQDLPREVLTTN 326
Query: 1425 IQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAI-RLIQACVDVLSSNGW 1483
P S + + WD W + V+ + + +I++ ++VL
Sbjct: 327 --PRRLSIIAESIRDGLA-TWD---------NW---KHVNCDKLTTIIESSLNVLEPA-- 369
Query: 1484 LSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADI-IKRCTEKGVETVFDIMELEDDDRL 1542
E + + +L F I + ++ + + D +
Sbjct: 370 --------EY----------RKMF-DRLSVFPPSAHI---PTILLSLIWFDVI-KSDVMV 406
Query: 1543 RLLQLSESQLA--DVARFCNRYPNIELSYEVLNKDRISSGSSV----NVVVNLDREDEVT 1596
+ +L + L P+I L +V ++ + S+ N+ D +D +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 1597 GPVIAPFYPQKREEGWWVV-----IGDPKTNSLLSIKRLTLQ-QKAKIKLDFVAPNPGHH 1650
+ FY + I P+ +L + L + + KI+ D A N
Sbjct: 467 PYLDQYFY-------SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 1651 SYALYFMSDAYLG--CDQEYKFSIDVSEY 1677
Y CD + K+ V+
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAI 548
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 67.7 bits (164), Expect = 3e-11
Identities = 32/242 (13%), Positives = 75/242 (30%), Gaps = 24/242 (9%)
Query: 334 CTLLASSQSESERQKLRDTMSEDPALAKILRQLDTGKNED-GDANDSADARQSTSIRHQM 392
T LA + + KL L +I + + + Q+
Sbjct: 84 YTGLAEAIENWDFSKLEKLELHRQLLKRIEATMLEVDPVALIPYISTCLIDRECEEIQQI 143
Query: 393 GQGGGDGVAVVAGTRQVLDLE--------DLQFSSGSHFMSNKRCELPDGSFRKQRKGYE 444
+ + + + L + ++ +++ ++ + + +
Sbjct: 144 SENRSKAAGITKLIECLCRSDKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDSEMT 203
Query: 445 EVHVPALK-----PKPMGPDETLVP-IDKLPRYVQHAF--EDFKTLNRIQSRLCKSALES 496
+ L+ + PD+ L + + + K Q L + A+
Sbjct: 204 DASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAIN- 262
Query: 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556
+N L+CAPTG+GKT V++L K++++A + ++ F
Sbjct: 263 GKNALICAPTGSGKTFVSILICEHHFQNMPAGRK------AKVVFLATKVPVYEQQKNVF 316
Query: 557 GK 558
Sbjct: 317 KH 318
Score = 37.6 bits (86), Expect = 0.042
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 760 LPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 814
P G+GKT V++L K++++A + ++ F
Sbjct: 270 APTGSGKTFVSILICEHHFQNMPAGRK------AKVVFLATKVPVYEQQKNVFKH 318
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 67.3 bits (163), Expect = 3e-11
Identities = 32/242 (13%), Positives = 75/242 (30%), Gaps = 24/242 (9%)
Query: 334 CTLLASSQSESERQKLRDTMSEDPALAKILRQLDTGKNED-GDANDSADARQSTSIRHQM 392
T LA + + KL L +I + + + Q+
Sbjct: 84 YTGLAEAIENWDFSKLEKLELHRQLLKRIEATMLEVDPVALIPYISTCLIDRECEEIQQI 143
Query: 393 GQGGGDGVAVVAGTRQVLDLE--------DLQFSSGSHFMSNKRCELPDGSFRKQRKGYE 444
+ + + + L + ++ +++ ++ + + +
Sbjct: 144 SENRSKAAGITKLIECLCRSDKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDSEMT 203
Query: 445 EVHVPALK-----PKPMGPDETLVP-IDKLPRYVQHAF--EDFKTLNRIQSRLCKSALES 496
+ L+ + PD+ L + + + K Q L + A+
Sbjct: 204 DASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAIN- 262
Query: 497 DENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNF 556
+N L+CAPTG+GKT V++L K++++A + ++ F
Sbjct: 263 GKNALICAPTGSGKTFVSILICEHHFQNMPAGRK------AKVVFLATKVPVYEQQKNVF 316
Query: 557 GK 558
Sbjct: 317 KH 318
Score = 39.6 bits (91), Expect = 0.010
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 755 PVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 814
P G+GKT V++L K++++A + ++ F
Sbjct: 265 NALICAPTGSGKTFVSILICEHHFQNMPAGRK------AKVVFLATKVPVYEQQKNVFKH 318
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 3e-10
Identities = 97/564 (17%), Positives = 179/564 (31%), Gaps = 180/564 (31%)
Query: 1173 ISHDALKEDPLL---------ECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIA 1223
+SH +L E LL + L G D + EL
Sbjct: 11 LSHGSL-EHVLLVPTASFFIASQLQEQFNKI--LPEPTEGFAADDEPT---TPAEL---V 61
Query: 1224 SHY--YCTHE----TMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLME 1277
+ Y + + ++Q+L L+E E + L G H
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE--NCY-LEGNDIHALA------------- 105
Query: 1278 RAPIPIKESTDEPSAKVNILLQAYISQLKLEGF--------ALMSDMVFVTQSAARLMRA 1329
A + + D K L++ YI+ + AL V + A+L+ A
Sbjct: 106 -AKLL--QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA---VGEGNAQLV-A 158
Query: 1330 IF----EIVLYRGWAQLADKALSLCKMVDRRMWQSMSPL-RQFRKIPEEIIKKIEKKNFP 1384
IF Y + +L R ++Q+ L K E + ++ +
Sbjct: 159 IFGGQGNTDDY--FEEL------------RDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 1385 WERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLE-LATHIQPIT------------RS 1431
E+++ G N I E + P P + L + PI+
Sbjct: 205 AEKVFTQGLN-ILEWLENP----------SNTPDKDYLLS--IPISCPLIGVIQLAHYVV 251
Query: 1432 TLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAM 1491
T ++ L +P + L G + S+ + + A + ++ W S V+
Sbjct: 252 TAKL-LGFTPG-ELRSYLKGAT---------GHSQGL--VTAVA-IAETDSWESFFVSV- 296
Query: 1492 EVAQMITQAMW----SKDSYLKQLPH--FNADIIKRCTEKGVETVFDIMELEDDDRLRLL 1545
+ IT + ++Y P+ I++ E E V M L +
Sbjct: 297 --RKAITVLFFIGVRCYEAY----PNTSLPPSILEDSLENN-EGVPSPM-------LSIS 342
Query: 1546 QLSESQLADVARFCNRY-PN---IELSYEVLNKDRISSGSSVNVVVNLDREDEVTGPVIA 1601
L++ Q+ D N + P +E+S ++N + N+V V+GP +
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEIS--LVNGAK-------NLV--------VSGPPQS 385
Query: 1602 --PFYPQKREEGWWVVIGDPKTNSLLSIKRLTL-QQKAKIKLDFV---APNPGHHSYALY 1655
R+ K S L R+ ++K K F+ +P HS +
Sbjct: 386 LYGLNLTLRKA---------KAPSGLDQSRIPFSERKLKFSNRFLPVASP---FHS---H 430
Query: 1656 FMSDAYLGCDQ---EYKFSIDVSE 1676
+ A ++ + S + +
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKD 454
Score = 63.9 bits (155), Expect = 5e-10
Identities = 104/658 (15%), Positives = 183/658 (27%), Gaps = 243/658 (36%)
Query: 334 CTLLASSQSESERQKLRDTMSEDPALAKILRQLDTGKNEDGDANDSAD--ARQSTSIRHQ 391
LL + S +L++ KIL + G D + A+ + +
Sbjct: 18 HVLLVPTASFFIASQLQEQ------FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 392 MGQGGGDGVAVVAGTRQVLDLEDLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPAL 451
+ V QVL+L +F + ++ ++H AL
Sbjct: 72 VEPSK------VGQFDQVLNLCLTEFENC--YLEGN-----------------DIH--AL 104
Query: 452 KPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKT 511
K + ++T + K +++ R + SA L G +
Sbjct: 105 AAKLLQENDT--TLVKTKELIKNYITARIMAKRPFDKKSNSA------LFRAVGEGNAQ- 155
Query: 512 NVALLCML---QEIGKHINADGTINA--DEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHD 566
L + Q G + +E + +Y LV +++
Sbjct: 156 ----LVAIFGGQ---------GNTDDYFEELRDLYQTY-HVLVGDLI------------K 189
Query: 567 ERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPET--GLFYFDN-- 622
L LI T+ E V GL ++ L P Y +
Sbjct: 190 FSAETLSELIRTTLD-----AEKVFTQGL--------NILEWLE-NPSNTPDKDYLLSIP 235
Query: 623 -SFRPVALEQ--QYI------GVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVE 673
S + + Q Y+ G T + + G +Q LV+ + +
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-----------TGHSQGLVTAVAIA 284
Query: 674 LTISPDFQWDEKLHGGSEG----FWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVP 729
T S W+ + F+I V +E + P
Sbjct: 285 ETDS----WESFFVSVRKAITVLFFIGVRC--------YEAY-----------------P 315
Query: 730 VFEPLPPQYFLRIVSDRWIGAETI----LPVSFRLPRGAGKTNVALLCMLQEIGKHINAD 785
LPP I+ D E + L +S T + + + H+ A
Sbjct: 316 NTS-LPPS----ILEDSLENNEGVPSPMLSIS-------NLTQEQVQDYVNKTNSHLPAG 363
Query: 786 GTINADEFKIIYVA----PMRSLVQEMVGNFGKDEIHLLHDERGPV--LEALIARTIRNI 839
K + ++ ++LV V GP L L T+R
Sbjct: 364 --------KQVEISLVNGA-KNLV---VS--------------GPPQSLYGL-NLTLRKA 396
Query: 840 EATQEDVRLVGLSATLPNYKDVATLLRI-----KPETGLFYFDNSFRPVA-------LEQ 887
+A P+ D + RI K + F N F PVA L
Sbjct: 397 KA--------------PSGLDQS---RIPFSERKLK-----FSNRFLPVASPFHSHLLV- 433
Query: 888 QYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEK 945
++ + D+V V +A + + V+ G R + E+
Sbjct: 434 ---PASDL-------INKDLVKNNVSFNA--KDIQIPVYD-TFDGSDLRVLSGSISER 478
Score = 61.6 bits (149), Expect = 2e-09
Identities = 82/469 (17%), Positives = 128/469 (27%), Gaps = 193/469 (41%)
Query: 791 DEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVG 850
++F I P + DE E L+ + + + + E
Sbjct: 35 EQFNKILPEPTEGFAAD--------------DEPTTPAE-LVGKFLGYVSSLVEP----- 74
Query: 851 LSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYE 910
+ + + V L L F+N + LE NDI
Sbjct: 75 --SKVGQFDQVLNLC-------LTEFENCY----LEG-----------------NDI--- 101
Query: 911 KVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLR-TEADQV 969
HA +LL + KT I++ + + + S S + R
Sbjct: 102 ----HALAAKLLQ--ENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-ALFRAVGEGNA 154
Query: 970 K-----NG---------ELRDLLPYGFAIHHAGMTRVDRTLVEDLF--ADRHIQVLVSTA 1013
+ G ELRDL Y + LV DL + + L+ T
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDL--Y----------QTYHVLVGDLIKFSAETLSELIRTT 202
Query: 1014 T------------LAW----------------GVNLP-------AH-TVVDRTL---VED 1034
L W ++ P AH V + L +
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 1035 LFAD-----RHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVEL--GALDVLQM 1087
L + H Q LV+ +A + W + +
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIA-----ETDS---------------WESFFVSVRKAITV 302
Query: 1088 L---G-RA--GRPQYD----------TKGEGV-----LITN--HSELQYYLSLLNHQLPV 1124
L G R P EGV I+N ++Q Y++ N LP
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 1125 ESQM-ISKL---PDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPN 1169
Q+ IS L L +V G Q+L L R +AP+
Sbjct: 363 GKQVEIS-LVNGAKNL---VVSGPPQSLYGLNLTL-------RKAKAPS 400
Score = 60.4 bits (146), Expect = 5e-09
Identities = 81/460 (17%), Positives = 142/460 (30%), Gaps = 146/460 (31%)
Query: 1251 RVFSLS-GEFRH-ITVREEEKLELQKLMER----APIPIKEST--DEPSAKVNILLQ--A 1300
R +LS G H + V +L E+ P P + DEP+ ++ +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 1301 YISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLAD---KALSLCKMVDRRM 1357
Y+S L D V L FE G D A L + D +
Sbjct: 67 YVSSLVEPSKVGQFDQV------LNLCLTEFENCYLEG----NDIHALAAKLLQENDTTL 116
Query: 1358 WQSMSPLRQF--------RKIPEE----IIKKIEKKNFPWERLYDL----GPNE--IGEL 1399
++ ++ + R ++ + + + + N +L + G + EL
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA---QLVAIFGGQGNTDDYFEEL 173
Query: 1400 IRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGF--- 1456
R L +T H V K A + + R+TL E K+ ++G
Sbjct: 174 -R--DLYQTYHVLVGDLIK-FSAETLSELIRTTLDAE-----------KVF--TQGLNIL 216
Query: 1457 -WILVEDVDSE--------------AIRLIQAC-------------VDVLSSNGWLSPAV 1488
W+ E+ + I +IQ ++ S +
Sbjct: 217 EWL--ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 1489 AAMEVAQMITQAMWSKDSYLKQLPHFNADIIK-------RCTEKGVETVFDIMELEDDDR 1541
+ A I + S +S+ + I RC E T LED
Sbjct: 275 QGLVTAVAIAETD-SWESFFVSV----RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 1542 ---------LRLLQLSESQLADVARFCNRY-PN---IELSYEVLNKDR--ISSG---SSV 1583
L + L++ Q+ D N + P +E+S ++N + + SG S
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS--LVNGAKNLVVSGPPQSLY 387
Query: 1584 NVVVNLDREDEVTG--------------------PVIAPF 1603
+ + L + +G PV +PF
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Score = 53.5 bits (128), Expect = 8e-07
Identities = 60/303 (19%), Positives = 88/303 (29%), Gaps = 103/303 (33%)
Query: 1381 KNFP-----WERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRV 1435
K W R + G +I V P L H +R
Sbjct: 1637 KTSKAAQDVWNR---------ADNHFKDTYGFSILDIVINNPV-NLTIHFGGEKGKRIR- 1685
Query: 1436 ELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLS------PAVA 1489
E + F E + G + ++++ + S G LS PA+
Sbjct: 1686 ENYSAMIF---ETIVDGKLKTEKIFKEINEHSTSYTFR-----SEKGLLSATQFTQPALT 1737
Query: 1490 AMEVAQMITQAMWSKDSYLKQLP-----H----FNA-----DIIKRCTEKGVETVFDIME 1535
ME A + + SK L H + A D++ E VE VF
Sbjct: 1738 LMEKA--AFEDLKSK--GLIPADATFAGHSLGEYAALASLADVMS--IESLVEVVF---- 1787
Query: 1536 LEDDDRLRLLQ-------LSESQLADVARFCNRYPN---IELSYEVLNK--DRISSGSSV 1583
R +Q L S +A N P S E L +R+ +
Sbjct: 1788 ----YRGMTMQVAVPRDELGRSNYGMIA--IN--PGRVAASFSQEALQYVVERVGKRTGW 1839
Query: 1584 NV-VVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPK-----TNSLLSIKRLTLQQKAK 1637
V +VN + E++ V A GD + TN L IK K
Sbjct: 1840 LVEIVNYNVENQQY--VAA---------------GDLRALDTVTNVLNFIK------LQK 1876
Query: 1638 IKL 1640
I +
Sbjct: 1877 IDI 1879
Score = 50.4 bits (120), Expect = 7e-06
Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 64/231 (27%)
Query: 470 RYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGA-GKTN---VALLCMLQEIGKH 525
Y FE ++ K E + + G T AL M + +
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 526 INADGTINAD---------EFKIIYVAPMRSLVQEM-VGNFGKDEIHLLHDERGPVLEAL 575
+ + G I AD E Y A L V + + + ++ RG ++
Sbjct: 1747 LKSKGLIPADATFAGHSLGE----YAA----LASLADVMSI-ESLVEVVF-YRGMTMQVA 1796
Query: 576 IARTIRNIEATQEDVRLVGL-----SATLPNYKDVATLLRIKPETGLF-----YFDNSFR 625
+ R E + + ++ + +A+ + R+ TG Y N
Sbjct: 1797 VPRD----ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY--NV-- 1848
Query: 626 PVALEQQYI--GVTEKKA-------LKRFQVMN-DIV-------YEKVMEH 659
QQY+ G + +A L ++ DI+ E+V H
Sbjct: 1849 E---NQQYVAAG--DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 50.4 bits (120), Expect = 7e-06
Identities = 87/499 (17%), Positives = 139/499 (27%), Gaps = 195/499 (39%)
Query: 1095 QYDTKGEGVLITNHSELQ-YYLSLLNHQLPVESQMISKLPDML------NAEIVL---GT 1144
+ + + L+ ++ Y + + + P + + S L NA++V G
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL---FRAVGEGNAQLVAIFGG- 162
Query: 1145 VQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGL 1204
Q G T Y LR +LY H L+ DLI +A L
Sbjct: 163 -Q---------GNTDDYFEELR--DLYQTYH------VLVG----DLIKFSAETLSELIR 200
Query: 1205 IKYDRKSGHMQVTELGR-------------IAS--------------HYYCTHETMATYN 1237
D + Q + + S HY T + +
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG--- 257
Query: 1238 QLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKVNIL 1297
P EL L G T + + + I E+ S V++
Sbjct: 258 --FTPG----ELRS--YLKG----ATGHSQGLV--------TAVAIAETDSWESFFVSVR 297
Query: 1298 L-------------QAY--------ISQLKLE-GFALMSDMVFVT-------QSAARLMR 1328
+AY I + LE + S M+ ++ Q
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 1329 AIF------EIVLYRGWAQ--LADKALSLCKMVD--RRMW------QSMSPLRQFRKI-- 1370
+ EI L G ++ SL + R+ QS P + RK+
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE-RKLKF 416
Query: 1371 ---------P----------EEIIKKIEKKNFPWERLYDLG-P---NEIGELIR------ 1401
P + I K + K N + D+ P G +R
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA-KDIQIPVYDTFDGSDLRVLSGSI 475
Query: 1402 VPKLGKTI-HKYVH-----QFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEG 1455
++ I V QF ATHI L P GG+ G
Sbjct: 476 SERIVDCIIRLPVKWETTTQFK----ATHI-----------LDFGP---------GGASG 511
Query: 1456 FWILV-EDVDSEAIRLIQA 1473
+L + D +R+I A
Sbjct: 512 LGVLTHRNKDGTGVRVIVA 530
Score = 45.4 bits (107), Expect = 2e-04
Identities = 103/608 (16%), Positives = 171/608 (28%), Gaps = 243/608 (39%)
Query: 162 GSLAEERFALLV--NLGKKIT----DFGAEQKSTTAEENIDDTYGINV-------QFEES 208
GSL LLV + F T DD + S
Sbjct: 14 GSL---EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 209 EDEDDE-DTFGEVREA--EELDDE---GEEARVNTAIHAENLAGG--EDAEGTGRKKDKS 260
E + F +V E ++ G + IHA LA ++ + T K K
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGND------IHA--LAAKLLQENDTTLVKT-KE 121
Query: 261 LHPLDIDAYW-----LQRRLSKIYDDAMVSQAKAGEVLNILKSAGDDRDAENQLVLLLG- 314
L I Y +R K + A+ G QLV + G
Sbjct: 122 L----IKNYITARIMAKRPFDKKSNSALFRAVGEGNA---------------QLVAIFGG 162
Query: 315 ----YDCFDFIKML-KKYRQMI------LYCTLLASSQSESERQKLR----DTMS--EDP 357
D F+ ++ L + Y ++ TL ++ + +K+ + + E+P
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 358 A-------LAKI--------LRQL----DTGKNEDGDANDSADARQSTSIRHQMGQGGGD 398
+ L I + QL T K + + + G
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT-------GHSQ 275
Query: 399 GV---AVVAGT-------RQVLDLEDLQFSSGSHFMSNKRC-------ELPDGSFRKQRK 441
G+ +A T V + F G RC LP +
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGV------RCYEAYPNTSLPPSILEDSLE 329
Query: 442 GYEEVHVPALKPKPM----G-PDETLVP-IDKLPRYV---QHAF-------EDF------ 479
E V P PM E + ++K ++ + ++
Sbjct: 330 NNEGV------PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNV----------------------ALLC 517
++L + L K AP+G ++ + L
Sbjct: 384 QSLYGLNLTLRK----------AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-- 431
Query: 518 MLQEIGKHINADG-----TINADEFKIIYVAP---------MR----SLVQEMVGNFGKD 559
L IN D + NA + +I P +R S+ + +V D
Sbjct: 432 -LVPASDLINKDLVKNNVSFNAKDIQI----PVYDTFDGSDLRVLSGSISERIV-----D 481
Query: 560 EI----------------HLLHDERGP-VLEALIARTIRNIEATQEDVRLVGLSATL--- 599
I H+L + GP L T RN + T VR++ ++ TL
Sbjct: 482 CIIRLPVKWETTTQFKATHIL--DFGPGGASGLGVLTHRNKDGT--GVRVI-VAGTLDIN 536
Query: 600 PN----YK 603
P+ +K
Sbjct: 537 PDDDYGFK 544
Score = 43.9 bits (103), Expect = 6e-04
Identities = 53/380 (13%), Positives = 97/380 (25%), Gaps = 160/380 (42%)
Query: 806 QE--MVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVAT 863
QE M G D L+ A+ + N A G S +
Sbjct: 1627 QEQGM----GMD----LYK-TSKA-----AQDVWN-RADNHFKDTYGFS--------ILD 1663
Query: 864 LLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMND--IVYEKVMEHAGRN-Q 920
++ P +F + + + Y + F+ + D + EK+ + +
Sbjct: 1664 IVINNPVNLTIHFGGE-KGKRIRENYSAMI-------FETIVDGKLKTEKIFKEINEHST 1715
Query: 921 LLVFVHSRKE---TGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKN------ 971
F + T T A+ +EK A+ E L+++ +
Sbjct: 1716 SYTFRSEKGLLSATQFTQPAL--TLMEK-----------AAFEDLKSKGLIPADATFAGH 1762
Query: 972 --GE------------LRD---LLPY-GFAIHHA-----------GMTRVDRTLVEDLFA 1002
GE + ++ Y G + A GM ++ V F+
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 1003 DRHIQVLVSTATLAWG-----VNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLP 1057
+Q +V G VN N+
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNY---------------------------------NVE 1849
Query: 1058 AHTVIIKGTQIYNPEKGRWVELGALDVL-QMLGRAGRPQYDTKGEGVLITNHSELQYYLS 1116
+ G +L ALD + +L + D +
Sbjct: 1850 NQQYVAAG------------DLRALDTVTNVLNFIKLQKID-----------------II 1880
Query: 1117 LLNHQLPVESQMISKLPDML 1136
L L +E ++ L
Sbjct: 1881 ELQKSLSLE-----EVEGHL 1895
Score = 40.0 bits (93), Expect = 0.008
Identities = 52/304 (17%), Positives = 95/304 (31%), Gaps = 108/304 (35%)
Query: 135 AADEVLTVLKNDRMKEKEKKKETENLLG-SLAEERFALLVNLGKKIT-DFGAEQKSTTAE 192
AA +V +R ++ G S+ + +++N +T FG +K
Sbjct: 1641 AAQDVW-----NRADNH-----FKDTYGFSILD----IVINNPVNLTIHFGG-EKGKRIR 1685
Query: 193 ENIDDTYGINVQFEESEDE--DDEDTFGEVRE-AEELDDEGEEARV----NT--AIHAEN 243
EN Y + FE D E F E+ E + E+ + T A+
Sbjct: 1686 EN----Y-SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 244 LAGGEDAEGTGRKKDKSL---HPL--DIDAYWLQRRLSKIYDDAMVSQAKAGEVLNILKS 298
A ED + G + H L Y + A+ S A +V++I
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGE----Y------A-----ALASLA---DVMSI--- 1779
Query: 299 AGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASSQSESER-------QKLRD 351
E ++++ YR M + + S ++
Sbjct: 1780 -------E------------SLVEVVF-YRGMTMQVAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 352 TMSEDPALAKILRQLDTGKNEDGD----ANDSADARQSTSIRHQMGQGGGDGVAVVAGTR 407
+ S++ AL ++ ++ G N + + +Q V AG
Sbjct: 1820 SFSQE-ALQYVVERV---GKRTGWLVEIVNYNVENQQ----------------YVAAGDL 1859
Query: 408 QVLD 411
+ LD
Sbjct: 1860 RALD 1863
Score = 31.9 bits (72), Expect = 2.6
Identities = 47/313 (15%), Positives = 98/313 (31%), Gaps = 111/313 (35%)
Query: 81 FTRMKGATLLSEGV-------------------DEMVGII----YRPKTQETRQTYEVLL 117
+ +KGAT S+G+ + + ++ R E +
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR--CYEAYPNTSLPP 321
Query: 118 SFIQEALGDQPRDILCGAADEVLTVLKNDRMKEKEKKKETENLLGSLAEER--FALLVNL 175
S ++++L + G +L++ N ++ + N L + LVN
Sbjct: 322 SILEDSL-----ENNEGVPSPMLSI-SNLTQEQVQDYVNKTN--SHLPAGKQVEISLVN- 372
Query: 176 GKK---ITDFGAEQKSTTAEENIDDTYGINVQFEESEDEDDED---------------TF 217
G K ++ G Q YG+N+ +++ D F
Sbjct: 373 GAKNLVVS--GPPQ----------SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 218 GEV---------REAEELDDEGEEARVNTAIHAENLA-------GGEDAEGTGRKKDKSL 261
V A +L ++ + + N + +A+++ G D R S+
Sbjct: 421 LPVASPFHSHLLVPASDLINK-DLVKNNVSFNAKDIQIPVYDTFDGSDL----RVLSGSI 475
Query: 262 HPLDIDA------YW---LQRRLSKIYD---------DAMVSQAKAGEVLNILKSAGD-D 302
+D W Q + + I D + + K G + ++ AG D
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI-VAGTLD 534
Query: 303 RDAENQLVLLLGY 315
+ ++ G+
Sbjct: 535 INPDDD----YGF 543
Score = 31.2 bits (70), Expect = 4.5
Identities = 41/227 (18%), Positives = 65/227 (28%), Gaps = 80/227 (35%)
Query: 16 NS--NLVLQADVRLIERRSRDEATGEVCSLVG---KLEGTRMGDRFMRTKPIKAEERKVK 70
N NLV+ +G SL G L + +++ I ERK+K
Sbjct: 372 NGAKNLVV---------------SGPPQSLYGLNLTLRKAKAPSGLDQSR-IPFSERKLK 415
Query: 71 RQKRDEAQYDFTRMKGA----TLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFIQEALGD 126
R F + + LL D I + L
Sbjct: 416 FSNR------FLPV-ASPFHSHLLVPASD-----------------------LINKDL-- 443
Query: 127 QPRDILCGAADEVLTVL-----KNDRMKEKEKKKETENLLGSLAEERFALLVN----LGK 177
++ A D + V + R + ++ + + L V
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLR-------VLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 178 KIT---DFGAEQKSTTA---EENIDDTYGINVQFEESEDEDDEDTFG 218
K T DFG S N D T G+ V + D + +D +G
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNKDGT-GVRVIVAGTLDINPDDDYG 542
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 59.8 bits (145), Expect = 7e-10
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 455 PMGPDETLVPIDKLPRYVQHAF--EDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTN 512
MG D + D V E L Q + + ALE +N+++C PTG+GKT
Sbjct: 5 NMGSDSGTMGSDSDEENVAARASPEPELQLRPYQMEVAQPALE-GKNIIICLPTGSGKTR 63
Query: 513 VALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ 550
VA+ + K A K+I + LV+
Sbjct: 64 VAVYIAKDHLDKKKKASEP-----GKVIVLVNKVLLVE 96
Score = 36.7 bits (85), Expect = 0.036
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 760 LPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ 806
LP G+GKT VA+ + K A K+I + LV+
Sbjct: 55 LPTGSGKTRVAVYIAKDHLDKKKKASEP-----GKVIVLVNKVLLVE 96
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 59.9 bits (144), Expect = 5e-09
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 486 QSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545
Q L A + +N ++CAPTG GKT V+LL + K K+++ A
Sbjct: 9 QLELALPAKKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQK------GKVVFFANQ 61
Query: 546 RSLVQEMVGNFGK 558
+ ++ F +
Sbjct: 62 IPVYEQQATVFSR 74
Score = 44.5 bits (104), Expect = 3e-04
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 760 LPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 814
P G GKT V+LL + K K+++ A + ++ F +
Sbjct: 26 APTGCGKTFVSLLICEHHLKKFPCGQK------GKVVFFANQIPVYEQQATVFSR 74
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 59.6 bits (143), Expect = 6e-09
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 478 DFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEF 537
+ K Q L + A+ +N L+CAPTG+GKT V++L
Sbjct: 4 ETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRK------A 56
Query: 538 KIIYVAPMRSLVQEMVGNFGK 558
K++++A + ++ F
Sbjct: 57 KVVFLATKVPVYEQQKNVFKH 77
Score = 40.3 bits (93), Expect = 0.005
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 760 LPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 814
P G+GKT V++L K++++A + ++ F
Sbjct: 29 APTGSGKTFVSILICEHHFQNMPAGRK------AKVVFLATKVPVYEQQKNVFKH 77
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 55.8 bits (133), Expect = 1e-07
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 486 QSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPM 545
Q L A++ +N ++CAPTG GKT V+LL + K K+++ A
Sbjct: 18 QLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK------GKVVFFANQ 70
Query: 546 RSLVQEMVGNFGK 558
+ ++ F K
Sbjct: 71 IPVYEQNKSVFSK 83
Score = 40.7 bits (94), Expect = 0.004
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 760 LPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 814
P G GKT V+LL + K K+++ A + ++ F K
Sbjct: 35 APTGCGKTFVSLLICEHHLKKFPQGQK------GKVVFFANQIPVYEQNKSVFSK 83
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 44.0 bits (103), Expect = 4e-04
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 18/100 (18%)
Query: 477 EDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADE 536
D Q + E N L+ PTG GKT +A++ + K+
Sbjct: 5 RDLIQPRIYQEVIYAKCKE--TNCLIVLPTGLGKTLIAMMIAEYRLTKYGG--------- 53
Query: 537 FKIIYVAPMRSLVQ------EMVGNFGKDEIHLLHDERGP 570
K++ +AP + LV + N ++I L E+ P
Sbjct: 54 -KVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSP 92
Score = 32.5 bits (73), Expect = 1.6
Identities = 33/226 (14%), Positives = 76/226 (33%), Gaps = 28/226 (12%)
Query: 911 KVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVK 970
+++E G + L ++ E K + D + + S ++ D K
Sbjct: 287 ELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDK--RMKKAISLLVQAKEIGLDHPK 344
Query: 971 NGELRDLLPYGFAIHHAGMTRV---DRTLVEDLFADRHIQVLVSTATLAWGV--NLPAHT 1025
+L++++ V R + + + + + + N +
Sbjct: 345 MDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLS 404
Query: 1026 VVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVL 1085
++ L+ D FA VLV+T+ G+++P +++ + + + +
Sbjct: 405 QREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIR----------SI 454
Query: 1086 QMLGRAGRPQYDTKGEG---VLITNHSELQYYLSLLNHQLPVESQM 1128
Q GR GR G +L+ + + Y + E M
Sbjct: 455 QRRGRTGR-----HMPGRVIILMAKGTRDEAYYWSSRQK---EKIM 492
Score = 30.5 bits (68), Expect = 5.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
Query: 760 LPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQ------EMVGNFG 813
LP G GKT +A++ + K+ K++ +AP + LV + N
Sbjct: 30 LPTGLGKTLIAMMIAEYRLTKYGG----------KVLMLAPTKPLVLQHAESFRRLFNLP 79
Query: 814 KDEIHLLHDERGP 826
++I L E+ P
Sbjct: 80 PEKIVALTGEKSP 92
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 42.5 bits (100), Expect = 0.001
Identities = 65/402 (16%), Positives = 125/402 (31%), Gaps = 103/402 (25%)
Query: 760 LPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLV---QEMVGNFGKDE 816
LP G+GKT+VA+ + E+ + V P +L +E +G FG++
Sbjct: 115 LPTGSGKTHVAMAAI-NELST-------------PTLIVVPTLALAEQWKERLGIFGEEY 160
Query: 817 IHLLH---DERGPVLEALI--------------------------ARTIRNIEATQEDVR 847
+ E P+ + A + I
Sbjct: 161 VGEFSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPF 220
Query: 848 LVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDI 907
+GL+AT +L + + K +KR V +
Sbjct: 221 RLGLTATFEREDGRHEIL-------KEVVGGKVFELFPDSLAGKHLAKYTIKRIFV--PL 271
Query: 908 VYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLR--TE 965
++ +E+ R ++ + + + + E + E R
Sbjct: 272 AEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAF 331
Query: 966 ADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHT 1025
+ K +LR++L H D+ ++ F H +++ + +
Sbjct: 332 NSKNKIRKLREILER-----HRK----DKIII---FTR-HNELVYRISKV-----FLIPA 373
Query: 1026 VVDRTLVE------DLFADRHIQVLVSTATLAWGVNLP-AHTVII---KGTQIYNPEKGR 1075
+ RT E + F + +VS+ L G+++P A+ +I G+
Sbjct: 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAR------- 426
Query: 1076 WVELGALDVLQMLGRAGRPQYDTKGEGV---LITNHSELQYY 1114
+ +Q LGR RP K E V LI+ +
Sbjct: 427 -------EYIQRLGRILRP-SKGKKEAVLYELISRGTGEVNT 460
Score = 40.2 bits (94), Expect = 0.005
Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 46/131 (35%)
Query: 501 LLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLV---QEMVGNFG 557
+ PTG+GKT+VA+ + E+ + V P +L +E +G FG
Sbjct: 112 CIVLPTGSGKTHVAMAAI-NELST-------------PTLIVVPTLALAEQWKERLGIFG 157
Query: 558 KDEIHLLH---DERGPVLEALI--------------------------ARTIRNIEATQE 588
++ + E P+ + A + I
Sbjct: 158 EEYVGEFSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSI 217
Query: 589 DVRLVGLSATL 599
+GL+AT
Sbjct: 218 APFRLGLTATF 228
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 42.2 bits (98), Expect = 0.001
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 1028 DRTLVEDLFADRH--IQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG---RWVELGAL 1082
+ F D + ++LV+T + G+NL +I + + +
Sbjct: 358 TKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTS 417
Query: 1083 DVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLP 1123
LQ+ GRAGR K V NH +L +L +
Sbjct: 418 QALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVD 458
Score = 30.3 bits (67), Expect = 7.8
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 27/98 (27%)
Query: 466 DKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENL------------LLCAPTGAGKTNV 513
D P +++HA + F L+ S L N PT +GKT
Sbjct: 112 DLFPFFLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYH 171
Query: 514 ALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 551
A+ K+ +A +Y P++ L E
Sbjct: 172 AI-------QKYFSAKSG--------VYCGPLKLLAHE 194
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 36.7 bits (85), Expect = 0.072
Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 32/126 (25%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
DE H L ++ AR A + + ++AT P
Sbjct: 106 DEAHFLD------PASIAARGWAAHRARANESATILMTATPPGT--------------SD 145
Query: 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934
F +S + Q I + N ++ ++ F+ S +
Sbjct: 146 EFPHSNGEIEDVQTDIPS---------EPWN-TGHDWILADKRP--TAWFLPSIRAANVM 193
Query: 935 ARAIRD 940
A ++R
Sbjct: 194 AASLRK 199
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator, ATP-binding,
DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 35.4 bits (81), Expect = 0.18
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 973 ELRDLLPYGFAIHHAGMTRVDRTLVEDLFA--DRHIQVLVSTATLAWGVNLP-AHTVV 1027
LR+ A+ H GM+ ++R FA D QVL+ + + G N A +V
Sbjct: 522 VLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMV 579
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.24
Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 24/98 (24%)
Query: 142 VLKNDRMK-EKEKKKETENLLGSLAEERFALLVNLGKKITDFGAEQKSTT---AEENIDD 197
+ + DR+ E E ++ EE+ L L + A++++++
Sbjct: 74 IAQADRLTQEPESIRK-------WREEQRKRLQELDAA----SKVMEQEWREKAKKDLEE 122
Query: 198 TYGINVQFEESEDEDDEDTFGEVREAEE--LDDEGEEA 233
+ + + E E R A++ +
Sbjct: 123 -------WNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 34.7 bits (80), Expect = 0.29
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 17/104 (16%)
Query: 467 KLPRYVQHAFED--FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGK 524
+ F+ K L Q K ++ ++ + APTG GKT ++ L K
Sbjct: 5 NEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQ-GKSFTMVAPTGVGKTTFGMMTALWLARK 63
Query: 525 HINADGTINADEFKIIYVAPMRSLVQ---EMVGNFGKDEIHLLH 565
+ V P +LV+ E + +++ +
Sbjct: 64 GKKS-----------ALVFPTVTLVKQTLERLQKLADEKVKIFG 96
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.44
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 10/36 (27%)
Query: 1268 EKLELQKLMER----APIPIKESTDEPSAKVNILLQ 1299
EK L+KL A +S P+ + ++
Sbjct: 18 EKQALKKLQASLKLYAD----DSA--PALAIKATME 47
Score = 31.8 bits (71), Expect = 1.0
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 8/24 (33%)
Query: 345 ERQ---KLRDTM---SED--PALA 360
E+Q KL+ ++ ++D PALA
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA 41
Score = 30.3 bits (67), Expect = 3.4
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 13/29 (44%)
Query: 1125 ESQMISKL--------PD-----MLNAEI 1140
E Q + KL D + A +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
Score = 29.9 bits (66), Expect = 3.6
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 26/53 (49%)
Query: 480 KTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTI 532
+ L ++Q+ L A +S AP AL I A T+
Sbjct: 20 QALKKLQASLKLYADDS-------AP--------ALA---------IKA--TM 46
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 34.0 bits (78), Expect = 0.48
Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 32/130 (24%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
DE H ++ AR + + + ++AT P
Sbjct: 119 DEAHFTD------PASIAARGYIATKVELGEAAAIFMTATPPGT--------------TD 158
Query: 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934
F +S P+ Q I YE + E+AG+ + FV S K +
Sbjct: 159 PFPDSNAPIHDLQDEIPDRAWS----------SGYEWITEYAGK--TVWFVASVKMGNEI 206
Query: 935 ARAIRDMCLE 944
A ++ +
Sbjct: 207 AMCLQRAGKK 216
Score = 31.7 bits (72), Expect = 2.1
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 12/70 (17%)
Query: 493 ALESDENLLLCAPTGAGK-TNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQE 551
L + +L G+GK + + I + + + +AP R + E
Sbjct: 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRL-----------RTAVLAPTRVVAAE 65
Query: 552 MVGNFGKDEI 561
M +
Sbjct: 66 MAEALRGLPV 75
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.7 bits (74), Expect = 0.69
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
Query: 1 MADAAARQLQYEYKANSNLVL------QADVRLIERRSRDEATGE-VCSLVGKLEGTRMG 53
M + + N N+VL +++ER S G+ VC+L G + ++
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSE----GDVVCALCGLVLSDKLV 57
Query: 54 DR 55
D
Sbjct: 58 DT 59
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition
domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus
fulgidus} SCOP: c.37.1.19
Length = 237
Score = 32.3 bits (74), Expect = 0.96
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 17/71 (23%)
Query: 501 LLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM---VGNFG 557
+ PTG+GKT+VA+ + E+ + V P +L ++ +G FG
Sbjct: 112 CIVLPTGSGKTHVAMAAI-NELST-------------PTLIVVPTLALAEQWKERLGIFG 157
Query: 558 KDEIHLLHDER 568
++ +
Sbjct: 158 EEYVGEFSGRI 168
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural
genomics, structural GEN consortium, SGC, rRNA,
ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Length = 245
Score = 32.6 bits (75), Expect = 0.96
Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 17/113 (15%)
Query: 453 PKPMGPDETLVPIDKLPRYVQHAFED--FKTLNRIQSRLCKS--ALESDENLLLCAPTGA 508
P P+ + L K+ + D F+ IQ ++ + LL APTG+
Sbjct: 21 PDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQ---MQAIPVMLHGRELLASAPTGS 77
Query: 509 GKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL---VQEMVGNFGK 558
GKT + +L + F+ + ++P R L + + +
Sbjct: 78 GKTLAFSIPILM----QLKQPAN---KGFRALIISPTRELASQIHRELIKISE 123
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 33.0 bits (74), Expect = 1.1
Identities = 33/256 (12%), Positives = 70/256 (27%), Gaps = 22/256 (8%)
Query: 7 RQLQYEYKANSNLVLQADVRLIERRSRDEATGEVCSLVGKLEGTRMGDRFMRTKPIKAEE 66
R+ A + +R + + E LE M R
Sbjct: 320 REKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQ-ANLLEAQDMILRLEEQLRQLQAA 378
Query: 67 RKVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFIQEALGD 126
++ Q+++E Q R++ RQ E + QE +
Sbjct: 379 KEELEQRQNELQAMMQRLEETK---------------NMEAAERQKLEDEIRAKQEEVSR 423
Query: 127 QPRDILCGAADEVLTVLKNDRMKEKEKKKETENLLGSLAEERFALLVNLGK----KITDF 182
+++ ++ + + + K+ + L + + +D
Sbjct: 424 IQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASDA 483
Query: 183 GAEQKSTTAEENIDDTYGINVQFEESEDEDDEDTFGEVREAEELDD--EGEEARVNTAIH 240
G+E DD + ++ ++L + + IH
Sbjct: 484 GSESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDETKETAMDKIH 543
Query: 241 AENLAGGEDAEGTGRK 256
EN+ G D T R+
Sbjct: 544 RENVRQGRDKYKTLRE 559
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 32.5 bits (74), Expect = 1.4
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
Query: 493 ALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 552
++ GAGKT L +++E + + + +AP R + EM
Sbjct: 15 IFRKKRLTIMDLHPGAGKTKRILPSIVRE---ALLRRL-------RTLILAPTRVVAAEM 64
Score = 29.8 bits (67), Expect = 8.7
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 32/130 (24%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
DE H ++ AR + + + ++AT P
Sbjct: 117 DEAHFTD------PCSVAARGYISTRVEMGEAAAIFMTATPPGST--------------D 156
Query: 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934
F S P+ ++ I ++ + ++ G+ + FV S K
Sbjct: 157 PFPQSNSPIEDIEREIPERSWN----------TGFDWITDYQGK--TVWFVPSIKAGNDI 204
Query: 935 ARAIRDMCLE 944
A +R
Sbjct: 205 ANCLRKSGKR 214
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair,
nucleotide-binding, DNA-binding, polymorphism, nuclear
protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB:
2wwy_A*
Length = 591
Score = 32.7 bits (75), Expect = 1.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 978 LPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWG 1018
Y HA + D+T V ++ IQV+V AT+A+G
Sbjct: 295 GAY-----HANLEPEDKTTVHRKWSANEIQVVV--ATVAFG 328
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 31.8 bits (71), Expect = 1.9
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 480 KTLNRIQSRLCKSALESDEN--LLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEF 537
L R L + S + +LL +GAGKT + + + G + I+ D F
Sbjct: 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVI----IDGDSF 68
Query: 538 KIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRN 582
+ E+ +GKD + D G ++E+L+ +
Sbjct: 69 R-----SQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSSL 108
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 31.9 bits (72), Expect = 2.1
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 1508 LKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSES----QLADVARFCNRYP 1563
++ LP ++ E G +T+ I + + +SE + + N
Sbjct: 37 IEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGT 96
Query: 1564 NI---ELSYEVLNKDRISSGSS 1582
+ E + RIS+GS
Sbjct: 97 FMRADEYLKKRATIGRISTGSK 118
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center
for structural genomics, JCSG; HET: MSE ADP; 2.20A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 410
Score = 31.9 bits (72), Expect = 2.1
Identities = 24/194 (12%), Positives = 55/194 (28%), Gaps = 39/194 (20%)
Query: 1259 FRHITVREEEKLELQKLMERAPIPIKESTDEPSAKVNILLQAYISQLKLEGFALMSDMVF 1318
+ H T E++ L + RA + + ++ F
Sbjct: 223 YLHKTSVAYERM-LISTLLRAKELASQGVELFASPALHFFLYNDINHTEFHNNPDCLENF 281
Query: 1319 VTQSAARLMRAIFEIVLYRGWAQLADKALS-LCKMVDRR------MWQSMSPLRQFRKIP 1371
+ + A+ + W+ DK LS L + R + +++
Sbjct: 282 IQLDDNDIWTAL------KVWSNHPDKVLSTLSLGMINRNIFKVENSAEPIGEDRIKELT 335
Query: 1372 EEIIKKIEKKNFPWE----------RLYDLGPNEIG---------------ELIRVPKLG 1406
+I +++ +YD + I +++ + L
Sbjct: 336 LQISQQLGITLSEANYFVSTPSIEKNMYDPADDSIDIIYKDGTIKNIAEASDMLNISLLS 395
Query: 1407 KTIHKYVHQFPKLE 1420
K + KY + +L
Sbjct: 396 KKVKKYYLCYQRLH 409
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for
infectious disease, hydrolase; 1.70A {Coccidioides
immitis}
Length = 158
Score = 30.6 bits (69), Expect = 2.2
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 950 QFLREGSASMEVLRTEADQVKNGELRDLLPYGF 982
Q L + ++ + + K + +LLP +
Sbjct: 117 QVLADLHPGIKAIVIGKEGPKMVAVEELLPSIY 149
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 31.7 bits (72), Expect = 2.5
Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 32/130 (24%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
DE H L ++ AR + D + ++AT P
Sbjct: 100 DEAHFLDPA------SVAARGYIETRVSMGDAGAIFMTATPPGT--------------TE 139
Query: 875 YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934
F S P+ E+ I + YE + E GR + FVHS K+ +
Sbjct: 140 AFPPSNSPIIDEETRIPDKAWNS----------GYEWITEFDGR--TVWFVHSIKQGAEI 187
Query: 935 ARAIRDMCLE 944
++ +
Sbjct: 188 GTCLQKAGKK 197
>3c5b_A Putative uncharacterized protein; capsid protein, HK97 fold,
icosahedral virus; 4.50A {Enterobacteria phage
EPSILON15}
Length = 335
Score = 31.3 bits (70), Expect = 2.7
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 412 LEDLQFSSGSHFMSNK---RCELPDGSFRKQRKGYEEVH-VPALKPKPMGPDETLVPIDK 467
L D + + +K R +P+ +R+ +G + G L +DK
Sbjct: 38 LTDAIYVPCNDGSKHKTTIRAGIPEPVWRRYNQGVQPTKTQTVPVTDTTGMLYDLGFVDK 97
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga
maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Length = 780
Score = 31.4 bits (72), Expect = 3.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 1036 FADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 1072
FA+ +LVST + G+++P V++ I NPE
Sbjct: 635 FAEGRYDILVSTTVIEVGIDVPRANVMV----IENPE 667
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Length = 540
Score = 31.1 bits (70), Expect = 3.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 491 KSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADE 536
+AL+ + LLL A G GKT + +Q K + T + +
Sbjct: 20 INALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLD 65
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer
aging, hydrolase; HET: FLC; 2.00A {Sulfolobus
acidocaldarius} PDB: 3crw_1*
Length = 551
Score = 31.1 bits (70), Expect = 3.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 491 KSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTIN 533
L ++ + L APTG+GKT +LL L+ K + T N
Sbjct: 16 IEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHN 58
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 30.4 bits (69), Expect = 3.7
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 9/61 (14%)
Query: 470 RYVQHAFEDFKTLNRIQSRLCKSAL--------ESDENLLLCAPTGAGKTNVALLCMLQE 521
RY + + N Q+R + E + L G GKT++A + L+
Sbjct: 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA-VATLKA 61
Query: 522 I 522
I
Sbjct: 62 I 62
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 31.0 bits (70), Expect = 3.7
Identities = 12/100 (12%), Positives = 22/100 (22%), Gaps = 19/100 (19%)
Query: 469 PRYVQHAFEDFKTLNRIQSRLCKSALE--------SDENLLLCAPTGAGKTNVALLCMLQ 520
Y D N + + L+ + L L G GK+ + M
Sbjct: 116 KSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLL-AAMAH 174
Query: 521 EIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDE 560
E+ + S ++
Sbjct: 175 EL---------SEKKGVSTTLL-HFPSFAIDVKNAISNGS 204
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 30.9 bits (70), Expect = 3.8
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 667 VSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVL-HHEYFLLKSRYATDDHVVK 725
+ V L D +D+ G+ G + ++ + E+VL +++F +Y + V
Sbjct: 37 EKKVVVYLQ-KLDTAYDDL---GNSGHFTIIYNQGFEIVLNDYKWFAF-FKYKEEGSKVT 91
Query: 726 FF 727
+
Sbjct: 92 TY 93
>3dmo_A Cytidine deaminase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
hydrolase; 1.60A {Burkholderia pseudomallei}
Length = 138
Score = 29.5 bits (66), Expect = 4.5
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 950 QFLRE-GSASMEV-LRTEADQVKNGELRDLLPYGF 982
Q + E G ++EV L V+ DLLP F
Sbjct: 101 QVMIELGKPTLEVVLTNMQGDVRVTSAGDLLPDAF 135
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase;
1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19
c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 30.6 bits (70), Expect = 5.5
Identities = 45/267 (16%), Positives = 77/267 (28%), Gaps = 116/267 (43%)
Query: 788 INADEFKIIYVAPMRSLVQEMVGNFGKDEIHLL------------HDER------GPVLE 829
+ +++Y+AP R ++ + + LL HD R G + +
Sbjct: 111 CRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQ 170
Query: 830 AL-----IARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSF-RPV 883
+A T AT A +D+ LL + +SF RP
Sbjct: 171 RFPTLPFMALT-----AT----------ADDTTRQDIVRLLGLNDP---LIQISSFDRP- 211
Query: 884 ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVH------------SRKET 931
N I Y + + +QL+ +V SR +
Sbjct: 212 ---------------------N-IRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKV 249
Query: 932 GKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTR 991
+ L+ G Y HAG+
Sbjct: 250 --------------EDTAARLQ----------------SKG--ISAAAY-----HAGLEN 272
Query: 992 VDRTLVEDLFADRHIQVLVSTATLAWG 1018
R V++ F +Q++V AT+A+G
Sbjct: 273 NVRADVQEKFQRDDLQIVV--ATVAFG 297
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 29.9 bits (68), Expect = 6.1
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 485 IQSRLCKSALESDE--NLLLCAPTGAGKTNVALLCMLQEIGKHINADGT-INA-DE 536
+ RL K +E +LL P G GKT A+ G++ + +NA DE
Sbjct: 25 VIQRL-KGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1
related protein, hydrolase; 2.00A {Saccharomyces
cerevisiae} SCOP: c.97.1.1
Length = 142
Score = 29.0 bits (65), Expect = 6.2
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 950 QFLRE-GSASMEV--LRTEADQVKNGELRDLLPYGF 982
QF+ E + L + + K + +LLP F
Sbjct: 101 QFINEFVVKDFPIVMLNSTGSRSKVMTMGELLPMAF 136
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides,
salvage of nucleosides and nucleotides, structural
genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Length = 141
Score = 28.9 bits (65), Expect = 6.8
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 950 QFLRE-GSASMEV-LRTEADQVKNGELRDLLPYGF 982
Q + E +V L V+ + +LLP F
Sbjct: 100 QVMVELCKQDTKVYLSNLHGDVQETTVGELLPGAF 134
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural
genomics, structure-based function assignment,
decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP:
b.30.5.4
Length = 339
Score = 29.8 bits (68), Expect = 7.7
Identities = 8/28 (28%), Positives = 9/28 (32%), Gaps = 4/28 (14%)
Query: 686 LHGGSEGF----WILVEDVDSEVVLHHE 709
LHGG G W +V V
Sbjct: 100 LHGGPNGLGYRKWEVVRHAPESVSFSVR 127
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein,
translation; 1.75A {Saccharomyces cerevisiae} SCOP:
c.37.1.19
Length = 165
Score = 29.1 bits (66), Expect = 8.3
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 986 HAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVV 1027
++ + + +R + F ++L+ST LA G+++ ++V
Sbjct: 61 YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 102
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 29.6 bits (67), Expect = 8.5
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 485 IQSRLCKSALESDE--NLLLCAPTGAGKTNVALLCMLQEIGK--------HINA 528
I RL K +++ +LL P G GKT A L + +E+ +NA
Sbjct: 33 IVKRL-KHYVKTGSMPHLLFAGPPGVGKTTAA-LALARELFGENWRHNFLELNA 84
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 28.9 bits (65), Expect = 8.7
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 526 INADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIAR 578
+ +G I+ +F ++++ E D L+ + + L
Sbjct: 15 QDGNGHIDRSDFSGA----AKAMLAEFGVAARSDRGQALYGGAEALWQGLAGI 63
Score = 28.9 bits (65), Expect = 8.7
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 782 INADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIAR 834
+ +G I+ +F ++++ E D L+ + + L
Sbjct: 15 QDGNGHIDRSDFSGA----AKAMLAEFGVAARSDRGQALYGGAEALWQGLAGI 63
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 29.6 bits (67), Expect = 9.6
Identities = 8/36 (22%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 500 LLLCAPTGAGKTNVALLCMLQEIGKHINADGTINAD 535
+++ TG GK+ +++ ++ + N + IN+D
Sbjct: 5 IVIAGTTGVGKSQLSI-----QLAQKFNGE-VINSD 34
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 29.4 bits (66), Expect = 9.8
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 485 IQSRLCKSALESDE--NLLLCAPTGAGKTNVALLCMLQEI-GKHINADGT--INA-DEFK 538
+ L K L+S ++L P G GKT+ L + +E+ G + +NA DE
Sbjct: 45 AVTVL-KKTLKSANLPHMLFYGPPGTGKTSTI-LALTKELYGPDLMKSRILELNASDERG 102
Query: 539 IIYVAPMRSLVQEMVGNF 556
I S+V+E V NF
Sbjct: 103 I-------SIVREKVKNF 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.390
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 26,173,632
Number of extensions: 1695194
Number of successful extensions: 4744
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4633
Number of HSP's successfully gapped: 149
Length of query: 1689
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1582
Effective length of database: 3,714,246
Effective search space: 5875937172
Effective search space used: 5875937172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.1 bits)