RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14582
(1689 letters)
>d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 114
Score = 168 bits (428), Expect = 2e-49
Identities = 88/113 (77%), Positives = 100/113 (88%)
Query: 1564 NIELSYEVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNS 1623
NIELSYEV++KD I SG V V+V L+RE+EVTGPVIAP +PQKREEGWWVVIGD K+NS
Sbjct: 1 NIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNS 60
Query: 1624 LLSIKRLTLQQKAKIKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFSIDVSE 1676
L+SIKRLTLQQKAK+KLDFVAP G H+Y LYFMSDAY+GCDQEYKFS+DV E
Sbjct: 61 LISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKE 113
Score = 27.8 bits (62), Expect = 4.0
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 691 EGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGA 750
EG+W+++ D S ++ + L+ + + F P Y L +SD ++G
Sbjct: 47 EGWWVVIGDAKSNSLISIKRLTLQQKAKVK---LDFVAP--ATGAHNYTLYFMSDAYMGC 101
Query: 751 ETILPVSF 758
+ S
Sbjct: 102 DQEYKFSV 109
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 160 bits (405), Expect = 2e-45
Identities = 44/173 (25%), Positives = 85/173 (49%), Gaps = 4/173 (2%)
Query: 1248 ELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKEST-DEPSAKVNILLQAYISQLK 1306
L + S + E+ +I +R E L++L ++ P + ++P K N+LLQA++S+++
Sbjct: 5 GLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQ 64
Query: 1307 LEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQ 1366
L L SD + A RL++A +++ GW A A+ L +MV + MW S L+Q
Sbjct: 65 LSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQ 123
Query: 1367 FRKIPEEIIKKIEKKNFP-WERLYDLGPNEIGELIRV-PKLGKTIHKYVHQFP 1417
E IK+ K + ++ E L+++ + ++ +++P
Sbjct: 124 LPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 176
Score = 116 bits (292), Expect = 3e-30
Identities = 80/97 (82%), Positives = 93/97 (95%)
Query: 1467 AIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKG 1526
AIRLIQACVDVLSSNGWLSPA+AAME+AQM+TQAMWSKDSYLKQLPHF ++ IKRCT+KG
Sbjct: 80 AIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKG 139
Query: 1527 VETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYP 1563
VE+VFDIME+ED++R LLQL++SQ+ADVARFCNRYP
Sbjct: 140 VESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 176
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 201
Score = 90.0 bits (222), Expect = 9e-21
Identities = 56/237 (23%), Positives = 93/237 (39%), Gaps = 48/237 (20%)
Query: 882 PVALEQQ-YIGVTEKKALKRFQVMNDIVYEKVMEHAGRN--QLLVFVHSRKETGKTARAI 938
PV L + T + F + +E+++E +LVF +R+ KTA +
Sbjct: 1 PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKL 60
Query: 939 RDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVE 998
+ + E + + E + + +L + + G A HHAG+ R +VE
Sbjct: 61 SAITAKYV-------ENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVE 113
Query: 999 DLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPA 1058
D F +I+V+V+T TLA GVNLPA V+ R
Sbjct: 114 DAFRRGNIKVVVATPTLAAGVNLPARRVIVR----------------------------- 144
Query: 1059 HTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYL 1115
++ G + + QM GRAGRP D +GE ++I + + +
Sbjct: 145 ------SLYRFD---GYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAV 192
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 85
Score = 70.3 bits (172), Expect = 3e-15
Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 25/106 (23%)
Query: 1124 VESQMI--SKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKED 1181
+ S++ + L + I G + L++ + T+ + + +
Sbjct: 2 ITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL------------- 48
Query: 1182 PLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYY 1227
+ + LE G++ H+ T+LG + S Y
Sbjct: 49 -------SYELERVVRQLENWGMVVEAA---HLAPTKLGSLVSRLY 84
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 53.4 bits (127), Expect = 3e-08
Identities = 46/206 (22%), Positives = 74/206 (35%), Gaps = 57/206 (27%)
Query: 466 DKLPRYVQHAFED--FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIG 523
+ + Y ++ + L Q+ + S +NLLL PT AGKT +A + M++E
Sbjct: 8 ESISSYAVGILKEEGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAI 66
Query: 524 KH-------------------------------------------INADGTINADEFKII 540
K + I K
Sbjct: 67 KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKAD 126
Query: 541 YVAPMRSLVQEMVGNFGKDEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATL 599
+ R+ + V DEIHLL E RG LE L+ + + + +R++GLSAT
Sbjct: 127 SLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTK----MRRMNKALRVIGLSATA 182
Query: 600 PNYKDVATLLRIKPETGLFYFDNSFR 625
PN ++A L Y+ + +R
Sbjct: 183 PNVTEIAEWLDAD------YYVSDWR 202
Score = 40.3 bits (93), Expect = 8e-04
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 802 RSLVQEMVGNFGKDEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKD 860
R+ + V DEIHLL E RG LE L+ + + + +R++GLSAT PN +
Sbjct: 132 RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTK----MRRMNKALRVIGLSATAPNVTE 187
Query: 861 VATLLRIKPETGLFYFDNSFR 881
+A L Y+ + +R
Sbjct: 188 IAEWLDAD------YYVSDWR 202
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 43.5 bits (101), Expect = 3e-05
Identities = 23/143 (16%), Positives = 37/143 (25%), Gaps = 42/143 (29%)
Query: 494 LESDENLLLCAPTGAGKTNVALLCMLQE-------------------------------I 522
L+ +L GAGKT L +L E
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKF 63
Query: 523 GKHINADGTINADEFKIIYVAPMRSLVQEMV--GNFGK---DEIHLLHDERGPVLEALIA 577
+ + + A + + E N+ DE H L + A
Sbjct: 64 HTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPAS------IAA 117
Query: 578 RTIRNIEATQEDVRLVGLSATLP 600
R A + + ++AT P
Sbjct: 118 RGWAAHRARANESATILMTATPP 140
Score = 31.2 bits (69), Expect = 0.48
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 815 DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLP 856
DE H L + AR A + + ++AT P
Sbjct: 105 DEAHFLDPAS------IAARGWAAHRARANESATILMTATPP 140
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 44.9 bits (105), Expect = 4e-05
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 493 ALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 552
++ GAGKT L +++E K + + +AP R + EM
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIK----------RGLRTLILAPTRVVAAEM 54
Query: 553 VGNFGKDEIH 562
I
Sbjct: 55 EEALRGLPIR 64
Score = 33.4 bits (75), Expect = 0.24
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 761 PRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIH 818
GAGKT L +++E K + + +AP R + EM I
Sbjct: 17 HPGAGKTKRYLPAIVREAIK----------RGLRTLILAPTRVVAAEMEEALRGLPIR 64
Score = 29.1 bits (64), Expect = 4.5
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 9/63 (14%)
Query: 1040 HIQVLVSTATLAWGVNLPAHTVIIKGTQI-----YNPEKG----RWVELGALDVLQMLGR 1090
+V+T G N A VI + + E+ + + Q GR
Sbjct: 224 DWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGR 283
Query: 1091 AGR 1093
GR
Sbjct: 284 VGR 286
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 42.5 bits (98), Expect = 2e-04
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 477 EDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKH 525
D Q + E N L+ PTG GKT +A++ + K+
Sbjct: 5 RDLIQPRIYQEVIYAKCKE--TNCLIVLPTGLGKTLIAMMIAEYRLTKY 51
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 42.6 bits (99), Expect = 2e-04
Identities = 24/103 (23%), Positives = 30/103 (29%), Gaps = 13/103 (12%)
Query: 457 GPDETLVPIDKLPRYVQHAFED-FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVAL 515
L P D L + F IQ K L E+ APTG GKT+ L
Sbjct: 18 AASLCLFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILR-KESFAATAPTGVGKTSFGL 76
Query: 516 LCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558
L K + + P LV + K
Sbjct: 77 AMSLFLALKG-----------KRCYVIFPTSLLVIQAAETIRK 108
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 41.5 bits (96), Expect = 3e-04
Identities = 26/195 (13%), Positives = 55/195 (28%), Gaps = 52/195 (26%)
Query: 467 KLPRYVQHAFED---FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIG 523
L + ++ ++ Q + + L S + L+ PTG GK+ + L G
Sbjct: 8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVL-SGRDCLVVMPTGGGKSLCYQIPALLLNG 66
Query: 524 KHI-----NADGTINADEFK-------------------------------IIYVAPMRS 547
+ + D+ + ++Y+AP R
Sbjct: 67 LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERL 126
Query: 548 L--------VQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATL 599
+ DE H + + + + + L+AT
Sbjct: 127 MLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEY--AALGQLRQRFPTLPFMALTATA 184
Query: 600 PNY--KDVATLLRIK 612
+ +D+ LL +
Sbjct: 185 DDTTRQDIVRLLGLN 199
Score = 32.7 bits (73), Expect = 0.22
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 801 MRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNY-- 858
+ L DE H + + + + + L+AT +
Sbjct: 132 LEHLAHWNPVLLAVDEAHCISQWGHDFRPEY--AALGQLRQRFPTLPFMALTATADDTTR 189
Query: 859 KDVATLLRIK 868
+D+ LL +
Sbjct: 190 QDIVRLLGLN 199
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 37.7 bits (86), Expect = 0.009
Identities = 43/300 (14%), Positives = 87/300 (29%), Gaps = 34/300 (11%)
Query: 479 FKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFK 538
LN+ Q ++ ++ LL+ A G+GKT V + + + + +
Sbjct: 9 LAHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK-------HVAPWN 58
Query: 539 IIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSAT 598
I+ + +EM D ++ R +R D+ +G++
Sbjct: 59 ILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILR------RDIDRIGINRN 112
Query: 599 LPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDI------- 651
L +K D I + + L Q
Sbjct: 113 FSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKV 172
Query: 652 ---VYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGF-WILVEDVDSEVVLH 707
VY++ + RN L + TI + + LH F +I +++
Sbjct: 173 VSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQ 232
Query: 708 HEYFL-----LKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPR 762
+ ++ A D + + Q L D +L ++R +
Sbjct: 233 YTLVKKLAERFQNICAVGDADQS--IYRWRGADIQNILSFERDYPNAKVILLEQNYRSTK 290
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 37.6 bits (86), Expect = 0.011
Identities = 36/238 (15%), Positives = 90/238 (37%), Gaps = 10/238 (4%)
Query: 791 DEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVG 850
+ +K + +R ++++ + + + P E L A I N E + + L G
Sbjct: 13 EIYKEVR-KLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRG 71
Query: 851 LSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYE 910
L + + + GL + + E + K ++ +D +
Sbjct: 72 LLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASK-----EIFSDKRMK 126
Query: 911 KVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVK 970
K + + + + H + + + I L++ + + + + + VK
Sbjct: 127 KAISLLVQAKEIGLDHPKMDK---LKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK 183
Query: 971 NG-ELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVV 1027
+G + + + + G+++ ++ L+ D FA VLV+T+ G+++P +V
Sbjct: 184 DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLV 241
Score = 35.3 bits (80), Expect = 0.045
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 1032 VEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRA 1091
+ D FA VLV+T+ G+++P +++ Y P A+ +Q GR
Sbjct: 211 ILDEFARGEFNVLVATSVGEEGLDVPEVDLVV----FYEPVP------SAIRSIQRRGRT 260
Query: 1092 GRPQYDTKGEGVLITNHS-ELQYYLS 1116
GR +L+ + + YY S
Sbjct: 261 GRHM--PGRVIILMAKGTRDEAYYWS 284
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 35.6 bits (81), Expect = 0.014
Identities = 18/138 (13%), Positives = 30/138 (21%), Gaps = 36/138 (26%)
Query: 492 SALESDENLLLCAPTGAGKTNVALLCMLQ----------------------------EIG 523
+ +S + L APTG+GK+ +
Sbjct: 3 AVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPN 62
Query: 524 KHINADGTINADEFKIIYVAPMRSLVQEMVGNFG---KDEIHLLHDERGPVLEALIARTI 580
+ G + DE H I T+
Sbjct: 63 IRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECH----STDATSILGI-GTV 117
Query: 581 RNIEATQEDVRLVGLSAT 598
+ T +V +AT
Sbjct: 118 LDQAETAGARLVVLATAT 135
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 31.2 bits (69), Expect = 1.0
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 482 LNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIY 541
LN Q + + L+ A G+GKT V + +I I G I
Sbjct: 2 LNPGQQQAVEF---VTGPCLVLAGAGSGKTRV----ITNKIAHLIRGCG---YQARHIAA 51
Query: 542 VAPMRSLVQEMVGNFGK 558
V +EM G+
Sbjct: 52 VTFTNKAAREMKERVGQ 68
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 30.2 bits (66), Expect = 2.0
Identities = 12/94 (12%), Positives = 26/94 (27%)
Query: 459 DETLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCM 518
D+++ +P+ + H + + L+ + ++ L G GKT
Sbjct: 5 DDSVFSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLW 64
Query: 519 LQEIGKHINADGTINADEFKIIYVAPMRSLVQEM 552
K IN ++
Sbjct: 65 ELYKDKTTARFVYINGFIYRNFTAIIGEIARSLN 98
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1,
LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 28.6 bits (64), Expect = 2.1
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 1158 TYLYIR--MLRA----PNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKY 1207
+L+IR L+ P + L++ L+H +LER GLI +
Sbjct: 38 VFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINF 93
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor
large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Length = 203
Score = 29.4 bits (66), Expect = 3.1
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 17/62 (27%)
Query: 700 VDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
V+S L HE D V+FF PLPP F R+ + A+ ++P+
Sbjct: 66 VESLFHLRHE-----------DGSVQFFS---TPLPPAVFARVCV---VKADELVPLPGD 108
Query: 760 LP 761
L
Sbjct: 109 LA 110
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 29.0 bits (63), Expect = 4.2
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 476 FEDFKTLNRIQSRLCKSALESDE---NLLLCAPTGAGKTNVALLCMLQEIGKHIN 527
+ + L KS + +LLL P G GK + + G +
Sbjct: 10 LNALSHNEELTNFL-KSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVY 63
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 202
Score = 29.0 bits (65), Expect = 4.4
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 17/62 (27%)
Query: 700 VDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFR 759
V+S + HE + V+FF E L P F ++V I ++P+
Sbjct: 66 VESLFSIRHE-----------NGAVEFFR---EALSPAVFAKVVY---IKEGELVPIDNA 108
Query: 760 LP 761
P
Sbjct: 109 SP 110
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 28.1 bits (62), Expect = 6.5
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 486 QSRLCKSALESDE--NLLLCAPTGAGKTNVALLC---MLQEIGKH-----INADGTINAD 535
Q K +E E ++L+ + V+L + + K I+ +G
Sbjct: 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG----- 56
Query: 536 EFKIIYVAPMRSLVQEM 552
+ I + +R++ +
Sbjct: 57 --ENIGIDDIRTIKDFL 71
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus
[TaxId: 11089]}
Length = 299
Score = 28.4 bits (63), Expect = 6.7
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 12/70 (17%)
Query: 1034 DLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQ----IYNPEKG------RWVELGALD 1083
+ +++T G NL V+ T + + + + +
Sbjct: 76 PTIKQKKPDFILATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAA 135
Query: 1084 VLQMLGRAGR 1093
Q GR GR
Sbjct: 136 --QRRGRIGR 143
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.4 bits (62), Expect = 7.1
Identities = 11/94 (11%), Positives = 28/94 (29%), Gaps = 1/94 (1%)
Query: 488 RLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS 547
+C D +L TG GKT + ++ + +E + + S
Sbjct: 17 EMCGGGFFKDSIILATGATGTGKTLLV-SRFVENACANKERAILFAYEESRAQLLRNAYS 75
Query: 548 LVQEMVGNFGKDEIHLLHDERGPVLEALIARTIR 581
+ ++ + ++ + I+
Sbjct: 76 WGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIK 109
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 28.0 bits (61), Expect = 7.6
Identities = 18/175 (10%), Positives = 53/175 (30%), Gaps = 12/175 (6%)
Query: 501 LLCAPTGAGKTNVA--LLCMLQEIGKHIN--ADGTINADEFKIIYVAPMRSLVQEMVGNF 556
++ G G T + + L++ G + + G++ + K + R +++M
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPET 64
Query: 557 GKDEIHLLHDERGPVLEA--LIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPE 614
K + + + + + T + + + + D+ ++ +
Sbjct: 65 QKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGD 124
Query: 615 TGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVST 669
L + + + +++ Q MN G +V
Sbjct: 125 EILMRRMSDE------TRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQN 173
>d1kwma2 d.58.3.1 (A:1A-95A) Procarboxypeptidase B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 95
Score = 26.7 bits (59), Expect = 7.9
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 53 GDRFMRTKPIKAEERKVKRQKRDEAQYDFTRMKGATLLSEG--VDEMVGIIYRPKTQETR 110
G++ R + R+ Q DF + T + VD V +
Sbjct: 9 GEKVFRVNVEDENHINIIRELASTTQIDFWKPDSVTQIKPHSTVDFRVKAEDTVTVENVL 68
Query: 111 Q----TYEVLLSFIQEALGDQPRD 130
+ Y+VL+S ++ + + D
Sbjct: 69 KQNELQYKVLISNLRNVV-EAQFD 91
>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain
{Bacillus cereus [TaxId: 1396]}
Length = 244
Score = 28.2 bits (63), Expect = 8.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 1182 PLLECHRADLIHTAALHLERSGLI 1205
LE HR I A HL +GLI
Sbjct: 197 CTLEEHRNLPIEVQAKHLWATGLI 220
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 28.0 bits (61), Expect = 8.4
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 499 NLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGK 558
+LLL P G GKT +A + E+G ++ I + +++ +
Sbjct: 37 HLLLFGPPGLGKTTLAHVIA-HELGVNLRV-----TSGPAIEKPGDLAAILANSLEEGDI 90
Query: 559 DEIHLLHDERGPVLEAL 575
I +H E L
Sbjct: 91 LFIDEIHRLSRQAEEHL 107
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 136
Score = 27.3 bits (60), Expect = 8.5
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 950 QFLREGSASMEVLRTEAD-QVKNGELRDLLPYGF 982
Q +RE V T+ D +++LLP F
Sbjct: 94 QVMREFGTDWAVYMTKPDGTFVVRTVQELLPASF 127
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C
virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 28.0 bits (62), Expect = 9.9
Identities = 19/138 (13%), Positives = 33/138 (23%), Gaps = 30/138 (21%)
Query: 894 EKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLR 953
E+ AL + +E + L+F HS+K+ D L L
Sbjct: 12 EEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKC--------------DELAAKLV 57
Query: 954 EGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTA 1013
+ D I +G V T ++
Sbjct: 58 ALGINAVAYYRGLDVS-------------VIPTSGDVVVVATDALMTGFTGDFDSVIDCN 104
Query: 1014 TLA---WGVNLPAHTVVD 1028
T +L ++
Sbjct: 105 TCVTQTVDFSLDPTFTIE 122
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.390
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,219,626
Number of extensions: 304650
Number of successful extensions: 1098
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1092
Number of HSP's successfully gapped: 49
Length of query: 1689
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1591
Effective length of database: 1,062,056
Effective search space: 1689731096
Effective search space used: 1689731096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)