Query psy14584
Match_columns 563
No_of_seqs 319 out of 718
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 23:38:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3558|consensus 100.0 4.2E-57 9E-62 491.0 17.1 261 216-563 44-377 (768)
2 KOG3561|consensus 100.0 7E-45 1.5E-49 407.8 14.2 294 215-563 17-476 (803)
3 KOG3559|consensus 100.0 2.7E-39 6E-44 335.0 10.4 252 219-563 2-328 (598)
4 KOG3560|consensus 99.9 1.1E-23 2.3E-28 225.4 14.3 247 221-561 28-382 (712)
5 KOG3753|consensus 99.8 2.5E-19 5.3E-24 199.7 10.5 242 227-562 104-436 (1114)
6 PF14598 PAS_11: PAS domain; P 99.7 5.5E-17 1.2E-21 144.7 8.8 55 509-563 2-107 (111)
7 KOG1318|consensus 99.3 7.4E-13 1.6E-17 141.1 3.9 96 174-275 194-290 (411)
8 PF00010 HLH: Helix-loop-helix 99.2 2.3E-11 5E-16 95.4 4.2 54 218-271 1-55 (55)
9 KOG3561|consensus 99.1 3.9E-11 8.5E-16 136.8 2.7 84 118-209 77-175 (803)
10 cd00083 HLH Helix-loop-helix d 99.0 4.7E-10 1E-14 88.4 4.8 56 217-273 3-58 (60)
11 smart00353 HLH helix loop heli 98.9 2.6E-09 5.6E-14 82.6 5.4 51 223-274 1-51 (53)
12 KOG4304|consensus 98.8 3.2E-09 7E-14 107.8 3.4 91 215-314 29-123 (250)
13 KOG1319|consensus 98.6 2.1E-08 4.4E-13 96.9 2.8 62 212-273 56-120 (229)
14 KOG3558|consensus 98.4 2E-07 4.4E-12 104.2 3.3 58 143-200 120-188 (768)
15 KOG3559|consensus 97.7 1.8E-05 3.8E-10 84.5 2.1 52 142-194 79-142 (598)
16 KOG4029|consensus 97.3 0.00018 4E-09 72.0 3.1 59 215-273 106-164 (228)
17 KOG0561|consensus 97.2 0.00026 5.5E-09 73.4 3.3 58 215-274 57-114 (373)
18 KOG3560|consensus 97.0 0.00032 6.9E-09 77.4 2.0 48 145-193 114-173 (712)
19 KOG2588|consensus 96.8 0.00076 1.7E-08 78.7 3.4 57 216-275 274-330 (953)
20 KOG2483|consensus 96.8 0.0016 3.6E-08 65.9 4.9 58 215-273 56-113 (232)
21 PF08447 PAS_3: PAS fold; Int 96.2 0.01 2.2E-07 48.9 5.5 39 520-559 53-91 (91)
22 KOG3960|consensus 95.2 0.05 1.1E-06 55.7 6.7 55 216-272 116-170 (284)
23 PLN03217 transcription factor 95.1 0.026 5.7E-07 49.0 4.0 48 226-273 15-64 (93)
24 KOG3910|consensus 90.9 0.15 3.3E-06 56.5 2.6 59 216-274 524-582 (632)
25 smart00086 PAC Motif C-termina 89.9 1.9 4.1E-05 26.1 6.3 36 525-561 4-39 (43)
26 KOG3898|consensus 88.7 0.3 6.5E-06 50.3 2.6 57 215-272 69-125 (254)
27 KOG4395|consensus 88.2 0.59 1.3E-05 48.1 4.3 75 195-270 150-225 (285)
28 PF14598 PAS_11: PAS domain; P 80.5 0.8 1.7E-05 40.9 1.2 25 166-190 28-53 (111)
29 PF00989 PAS: PAS fold; Inter 78.4 1.9 4.1E-05 35.8 2.8 44 142-186 1-56 (113)
30 PF00989 PAS: PAS fold; Inter 59.4 56 0.0012 26.8 7.7 33 525-558 77-109 (113)
31 KOG4447|consensus 58.2 4.3 9.3E-05 39.2 0.8 52 218-271 78-129 (173)
32 PF13426 PAS_9: PAS domain; PD 56.4 88 0.0019 25.1 8.3 33 525-558 66-98 (104)
33 cd00130 PAS PAS domain; PAS mo 27.4 1.8E+02 0.0039 20.2 5.1 36 522-558 64-99 (103)
No 1
>KOG3558|consensus
Probab=100.00 E-value=4.2e-57 Score=490.97 Aligned_cols=261 Identities=25% Similarity=0.397 Sum_probs=211.4
Q ss_pred cccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHh--hcccccccCCCCCCccchhHHh
Q psy14584 216 PVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIR--GAVHSYTEGHYKPAFLTDQELK 293 (563)
Q Consensus 216 ~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~--~~~~~~~~~~~~P~~l~~~el~ 293 (563)
+.|||+++.|+|.||.|+|.+|.||+++||.+.++.++||||+|||+||.|||.-+ +++..... ..+....++.++
T Consensus 44 ~~rkEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRlrk~a~~g~~p~~--e~~~~~~e~~l~ 121 (768)
T KOG3558|consen 44 ELRKEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRLRKFAGAGDPPRA--EGEPENLEQHLG 121 (768)
T ss_pred HHHhhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHHHHHhhcCCcccc--cCCCcchhhhhh
Confidence 56899999999999999999999999999999999999999999999999999644 44333111 111222255789
Q ss_pred HHHHHhhhchhhhhh---chhhchhh---hh---h---------hHHh--hhhhhcCCCCCCccC--CCCCccccCCCCC
Q psy14584 294 HLILQAAEGFLQNHS---EIEKRRRD---KM---N---------TYIT--ELSAMVPTLLPVKTA--DIPAEVSRLCPGA 351 (563)
Q Consensus 294 ~l~LqALdGFLlVvs---~Ily~Se~---ll---q---------D~vh--qlse~~~~~Lp~~~g--~~~~~~~r~~~g~ 351 (563)
.+|||+||||+|||+ +||||||+ +| | |||| ||+|+.. .|.++.+ .+..+.. ...
T Consensus 122 ~~iLqsLDGFVm~l~~dG~~lYiSEtVS~yLGLSQvELTG~SvFDfiHP~DheE~~e-qL~l~~~~p~~~es~~---~~t 197 (768)
T KOG3558|consen 122 DHILQSLDGFVMALTQDGDFLYISETVSIYLGLSQVELTGSSVFDFIHPCDHEEIAE-QLGLRLTTPEVKESTD---TST 197 (768)
T ss_pred hhHHhhccceEEEEccCCCEEEEechhHhhhCccceeeecchhhhccCccCHHHHHH-HhccccCCCccccccc---Ccc
Confidence 999999999999999 99999976 33 3 8999 9998754 4444432 2222222 235
Q ss_pred ceeEEeeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccccccccccccccCCCcEEEEEEEeee
Q psy14584 352 RRSFFCRMKCKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQQSDRKYSVIQCTGYL 431 (563)
Q Consensus 352 ~RsFfcRMKctl~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~kk~~~~~~~~Y~VihctG~l 431 (563)
+|+||+|||||+++ |||+ +|+| +++||||||||++
T Consensus 198 eRsFflRMKsTLT~-----------------------RGRt----------------lnlK------Sa~yKvlh~tgh~ 232 (768)
T KOG3558|consen 198 ERSFFLRMKSTLTK-----------------------RGRT----------------LNLK------SAGYKVLHCTGHL 232 (768)
T ss_pred ceeEEEEeeeeecc-----------------------CCce----------------eeee------ccceeEEEEeeee
Confidence 89999999999984 4654 5565 8999999999999
Q ss_pred eecCCccCCCcccccCceeEeeeeccccccCccccCcccccCCCCCCCccccceeEEEEeeccccccccccccCcCCcce
Q psy14584 432 KSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGETCTLSCLVAVGRVLADKTRILNKQVNLRPIQF 511 (563)
Q Consensus 432 k~~~p~~~g~~~~~~~~y~v~hctgYlk~w~p~g~~l~~~e~e~~d~~~~~~scLVaigr~~p~s~p~~~~ei~~~~~eF 511 (563)
|...+...+- . .| || ..++.|||++|.++|+ +...|+++++.+|
T Consensus 233 rv~~~~sh~s-~---------~~-g~----------------------~~Pl~~lV~~a~alp~---ps~~EipL~~~~F 276 (768)
T KOG3558|consen 233 RVYNNPSHNS-P---------LC-GY----------------------KEPLLGLVALAEALPP---PSYTEIPLDCHMF 276 (768)
T ss_pred eeccCCCCCC-c---------cc-Cc----------------------cccchheeeeeccCCC---CcccccccCCcee
Confidence 9875422110 0 12 22 1137899999999999 7889999999999
Q ss_pred eEEeecCCcEEEE-------------------------------------------------EEEEeeCCcEEEEEeEEE
Q psy14584 512 LSRHALDGKFLFV-------------------------------------------------YQFKNKGGTYVQLQSEWK 542 (563)
Q Consensus 512 vsRHslDgKftfV-------------------------------------------------YRfl~K~GgyVwlqT~~t 542 (563)
+|||++||||+|| ||||+|+||||||||+||
T Consensus 277 vtRhs~DmkityCedRisdlm~y~PeeLvGrS~Ye~~Ha~Ds~~v~KSh~dL~~KGQv~TgyYR~lak~GGyvWlQTqAT 356 (768)
T KOG3558|consen 277 VTRHSLDMKITYCEDRISDLMDYEPEELVGRSCYEFVHALDSDRVRKSHHDLLTKGQVVTGYYRLLAKNGGYVWLQTQAT 356 (768)
T ss_pred EEeeecceeEEEEchhHHHHhcCCHHHhhchhHHHhhhHhhhhHHHHHHHHHHhcCccchhHHHHHHhcCCeEEEEeeeE
Confidence 9999999999999 999999999999999999
Q ss_pred EeecCCCCCccEEEEEEEEcC
Q psy14584 543 NFRNPWTKDIEYLISKNTLIL 563 (563)
Q Consensus 543 ~f~Np~s~~~e~IVcvn~Vis 563 (563)
+++|.++.+.|+|||||||||
T Consensus 357 Vi~~tkn~q~q~IicVnYVlS 377 (768)
T KOG3558|consen 357 VIYNTKNPQEQNIICVNYVLS 377 (768)
T ss_pred EEecCCCCCcceEEEEEeeec
Confidence 999999999999999999997
No 2
>KOG3561|consensus
Probab=100.00 E-value=7e-45 Score=407.78 Aligned_cols=294 Identities=38% Similarity=0.579 Sum_probs=213.0
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhc--ccccccCCCCCCccchhHH
Q psy14584 215 LPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGA--VHSYTEGHYKPAFLTDQEL 292 (563)
Q Consensus 215 ~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~--~~~~~~~~~~P~~l~~~el 292 (563)
++..|++||++|||||||+|.+|+||++|||.|.+..+|+||++|||+||++||.+++. .......+|+|+|++++||
T Consensus 17 ~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~~~~~~~~~~d~KpSflS~~eL 96 (803)
T KOG3561|consen 17 DRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQESENSSIDQDYKPSFLSNDEL 96 (803)
T ss_pred hhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhhhcccccccccccccccchHHH
Confidence 45579999999999999999999999999999999999999999999999999999986 4456678999999999999
Q ss_pred hHHHHHhhhchhhhhh---chhhchhh-----------hhh----hHHh---------hhh----h--hcCCCCCCccCC
Q psy14584 293 KHLILQAAEGFLQNHS---EIEKRRRD-----------KMN----TYIT---------ELS----A--MVPTLLPVKTAD 339 (563)
Q Consensus 293 ~~l~LqALdGFLlVvs---~Ily~Se~-----------llq----D~vh---------qls----e--~~~~~Lp~~~g~ 339 (563)
++|||+|||||+|||+ +|||+|+. |++ |++| ++. + +...+|..+.|+
T Consensus 97 ~~LmLeAlDGF~fvV~cdG~IvyVSeSVT~~L~y~QsDL~~qSly~ilhp~d~~~~~~ql~~r~~e~~f~~r~l~~~~~~ 176 (803)
T KOG3561|consen 97 THLILEALDGFLFVVNCDGRIVYVSESVTSVLGYLQSDLMGQSLYDILHPLDNDKPREQLSPRSNEHTFNCRLLDGKTGP 176 (803)
T ss_pred HHHHHHHhcCeEEEEecCceEEEEecchHHhhCcCHHHHhcchHHHhcCccccCcccccccccccccccchhhhccCCCC
Confidence 9999999999999999 99999943 331 5555 111 0 111122222222
Q ss_pred --------------------------------------CCC-------------------ccccCCCCCceeEEeeeccc
Q psy14584 340 --------------------------------------IPA-------------------EVSRLCPGARRSFFCRMKCK 362 (563)
Q Consensus 340 --------------------------------------~~~-------------------~~~r~~~g~~RsFfcRMKct 362 (563)
... ...++|.++||+|+|||+|.
T Consensus 177 ~~~E~~~~~~~~~~~~~~~~~s~e~~~~~i~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~id~~~~~~aRrsfe~r~r~~ 256 (803)
T KOG3561|consen 177 PPEEAVKFYGNFQCFTNSQPKSIEGFQSTICRQRRKAEGDRVCFGVSRLTTPQLIGEMCIIDTRLCEGARRSFECRMRFC 256 (803)
T ss_pred chHHhhhhhhhcccccccCccccccccccceeeccccccCccccccccccchhhccceeccccccccccccchhhhhhhc
Confidence 122 55678888899999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccccccccccccccCCCcEEEEEEEeeeeecCCccCCCc
Q psy14584 363 HTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQQSDRKYSVIQCTGYLKSWAPAKMGLE 442 (563)
Q Consensus 363 l~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~kk~~~~~~~~Y~VihctG~lk~~~p~~~g~~ 442 (563)
...+. | + ..|.++-.-|..+..... .
T Consensus 257 ~~r~~-------------------p-------~------------------------~gy~~~~~~g~~~~~~~~----~ 282 (803)
T KOG3561|consen 257 DHRAP-------------------P-------I------------------------IGYEPFEVLGTSRNYDYY----H 282 (803)
T ss_pred cccCC-------------------c-------c------------------------ccccceeecccccccccc----c
Confidence 65310 0 0 012222222222211100 0
Q ss_pred ccccCceeEeeeeccccccCcc-----------ccCcccccCCCCCCCccccceeEEEEeeccccc---ccccccc----
Q psy14584 443 ESEDRKYSVIQCTGYLKSWAPA-----------KMGLEESEGEGEGGETCTLSCLVAVGRVLADKT---RILNKQV---- 504 (563)
Q Consensus 443 ~~~~~~y~v~hctgYlk~w~p~-----------g~~l~~~e~e~~d~~~~~~scLVaigr~~p~s~---p~~~~ei---- 504 (563)
-++...|+++||+||+|+|+|+ ++-++.+.. ......++..|||+|++..+... ++.+.+.
T Consensus 283 ~~~~~~y~~~h~~g~~~s~~~~c~~~~~t~~~q~~~~~~d~~-i~~~~~~s~p~~v~~~~~~vs~~~~~~p~~~~~~~~~ 361 (803)
T KOG3561|consen 283 KDDLPNYRVIHCTGYIKSAGPSCKYRFLTKGQQWIWLPQDDY-ISYHQWNSKPCLVAIGRLVVSYAEVRVPSRADMSIEG 361 (803)
T ss_pred cCcccceEEEeeeeeEeccCCcceeccccccccccccCcccc-ccccccCCCcceeEecccccchhhccCcccccCcccc
Confidence 0112456666666666666666 655542221 01223345679999999998653 2222221
Q ss_pred ------CcCCcceeEEeecCCcEEEE--------------------------------------------------EEEE
Q psy14584 505 ------NLRPIQFLSRHALDGKFLFV--------------------------------------------------YQFK 528 (563)
Q Consensus 505 ------~~~~~eFvsRHslDgKftfV--------------------------------------------------YRfl 528 (563)
......|.+||..||+|+|| |||+
T Consensus 362 ~~~~~~~~~~~~~~sr~~~~g~~~~~dqr~~~i~~~~~~~~~g~ss~~s~h~~d~~~~~~s~~~~~~~s~~~~~~~yr~~ 441 (803)
T KOG3561|consen 362 PRQQPSSPQSSEFISRSSSDGSFTFVDQRASAILGYQPQELLGRSSYESSHPADSSPLSESLKQVQALSEQRSTLLYRFR 441 (803)
T ss_pred ccccccCcccchhhcccCcCCceeccccccccccccCchhhcCcccccccCccccchhhchHHHHHHhcccccccccccc
Confidence 34677999999999999999 9999
Q ss_pred eeCCcEEEEEeEEEEeecCCCCCccEEEEEEEEcC
Q psy14584 529 NKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTLIL 563 (563)
Q Consensus 529 ~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~Vis 563 (563)
.+||.|+|+.|+|+.|.|+|++++++|||+|.++.
T Consensus 442 ~~n~~~~~~~~~~~~~~n~~s~~~~~~~~~ns~~~ 476 (803)
T KOG3561|consen 442 SKNGSSIPNKSSAYLFSNPGSDEVEYIVCTNSNVP 476 (803)
T ss_pred cCCCCccccccccccccCCCccccceeeecccccc
Confidence 99999999999999999999999999999999873
No 3
>KOG3559|consensus
Probab=100.00 E-value=2.7e-39 Score=335.01 Aligned_cols=252 Identities=28% Similarity=0.437 Sum_probs=198.3
Q ss_pred ccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHh----hcccccccC-CCCCCccchhHHh
Q psy14584 219 RQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIR----GAVHSYTEG-HYKPAFLTDQELK 293 (563)
Q Consensus 219 re~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~----~~~~~~~~~-~~~P~~l~~~el~ 293 (563)
++++..++|-||+|+|-+|.||+++||+..+..+++||++|+|+|-.|||+-. +.++.+... .-.|-.-.+.|++
T Consensus 2 kekSKnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~vFPeGLGeawg~~S~a~~~~g~~~elg 81 (598)
T KOG3559|consen 2 KEKSKNAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRNVFPEGLGEAWGASSRADPLDGVDKELG 81 (598)
T ss_pred CccchhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHHhcccccchhccCCCccccccchHHHHH
Confidence 56778899999999999999999999999999999999999999999999632 223333211 1112222468899
Q ss_pred HHHHHhhhchhhhhh---chhhchhh-----------hh-h---hHHh--hhhhhcCCCCCCccCCCCCccccCCCCCce
Q psy14584 294 HLILQAAEGFLQNHS---EIEKRRRD-----------KM-N---TYIT--ELSAMVPTLLPVKTADIPAEVSRLCPGARR 353 (563)
Q Consensus 294 ~l~LqALdGFLlVvs---~Ily~Se~-----------ll-q---D~vh--qlse~~~~~Lp~~~g~~~~~~~r~~~g~~R 353 (563)
.++|+.||||+|||. +|+||||. ++ | |||| ||.+|.. .|..+. ++.+ .+.+|
T Consensus 82 shlLqtLDGF~fvva~dGkimYISETaSvhLGLSQVElTGNsi~eYIH~~D~demna-~L~~h~-H~qe------yeIEr 153 (598)
T KOG3559|consen 82 SHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIYEYIHPQDHDEMNA-VLTAHQ-HLQE------YEIER 153 (598)
T ss_pred HhHHHhhcceEEEEeCCCCEEEEecceeeeecceeeEeecchhhhhhcccchHHHHH-HHhhhh-hhhh------hhhhh
Confidence 999999999999999 99999965 12 2 8899 7888743 444332 1111 24789
Q ss_pred eEEeeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccccccccccccccCCCcEEEEEEEeeeee
Q psy14584 354 SFFCRMKCKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQQSDRKYSVIQCTGYLKS 433 (563)
Q Consensus 354 sFfcRMKctl~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~kk~~~~~~~~Y~VihctG~lk~ 433 (563)
+||+||||.+. |+.+.+ ...+|+||||.||+|.
T Consensus 154 sfflrmkCvla-------------------------------krnagl----------------t~sg~kvihcSgylKi 186 (598)
T KOG3559|consen 154 SFFLRMKCVLA-------------------------------KRNAGL----------------TCSGYKVIHCSGYLKI 186 (598)
T ss_pred hhhhhhhhhhe-------------------------------eccccc----------------cccCcceEeecCcceE
Confidence 99999999996 222222 2678999999999998
Q ss_pred cCCccCCCcccccCceeEeeeeccccccCccccCcccccCCCCCCCcc-ccceeEEEEeeccccccccccccCcCCccee
Q psy14584 434 WAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGETC-TLSCLVAVGRVLADKTRILNKQVNLRPIQFL 512 (563)
Q Consensus 434 ~~p~~~g~~~~~~~~y~v~hctgYlk~w~p~g~~l~~~e~e~~d~~~~-~~scLVaigr~~p~s~p~~~~ei~~~~~eFv 512 (563)
..-. + +++. .++| ....|||||.++|+ +...++.+.+.+||
T Consensus 187 r~y~------------------------------~---~m~p--~dscyqn~glvAvG~slP~---saiteikl~sNmFm 228 (598)
T KOG3559|consen 187 RQYE------------------------------L---DMSP--NDSCYQNVGLVAVGHSLPP---SAITEIKLHSNMFM 228 (598)
T ss_pred EEEe------------------------------e---ccCC--ccchhheeeeEEecCCCCc---ccceEEEeccceEE
Confidence 5310 0 0111 1122 24689999999999 57889999999999
Q ss_pred EEeecCCcEEEE-------------------------------------------------EEEEeeCCcEEEEEeEEEE
Q psy14584 513 SRHALDGKFLFV-------------------------------------------------YQFKNKGGTYVQLQSEWKN 543 (563)
Q Consensus 513 sRHslDgKftfV-------------------------------------------------YRfl~K~GgyVwlqT~~t~ 543 (563)
+|.++|+|++|. |||+.|.|||||+|+.++.
T Consensus 229 fraslDlkliF~D~rv~qltgYepqdliektLY~~ih~~D~~~lr~~H~~ll~kGqvtTkYYR~l~k~ggwvwvqsyat~ 308 (598)
T KOG3559|consen 229 FRASLDLKLIFLDSRVHQLTGYEPQDLIEKTLYHHIHGCDSFHLRCAHHLLLVKGQVTTKYYRFLLKQGGWVWVQSYATF 308 (598)
T ss_pred EEeecceEEEeehhhHHHhhCCCchhhhhHHHHHHhhhhhHHHHHHHHHHHHhccccccHHHHHHHcCCceEEEEEeeEE
Confidence 999999999999 9999999999999999999
Q ss_pred eecCCCCCccEEEEEEEEcC
Q psy14584 544 FRNPWTKDIEYLISKNTLIL 563 (563)
Q Consensus 544 f~Np~s~~~e~IVcvn~Vis 563 (563)
+.|.++..++|||++|||+|
T Consensus 309 vHnSrSSR~~fivSvnyVls 328 (598)
T KOG3559|consen 309 VHNSRSSRPHFIVSVNYVLS 328 (598)
T ss_pred EeccccCCcceEEeeeeeee
Confidence 99999999999999999985
No 4
>KOG3560|consensus
Probab=99.90 E-value=1.1e-23 Score=225.40 Aligned_cols=247 Identities=23% Similarity=0.327 Sum_probs=168.9
Q ss_pred ccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHH---Hhhcccccc-cCC-CC--CCccc----h
Q psy14584 221 NHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKT---IRGAVHSYT-EGH-YK--PAFLT----D 289 (563)
Q Consensus 221 ~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~---L~~~~~~~~-~~~-~~--P~~l~----~ 289 (563)
.+..-.||.||+.|.+++-|+.|||.+..+.+||||++|||++|+|||. ++...+... +.. .. +...+ .
T Consensus 28 tkSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~KSfFqvvl~~s~~~~~gg~~s~~a~~~yr~g 107 (712)
T KOG3560|consen 28 TKSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRVKSFFQVVLHQSSRQPAGGPPSPHASCPYRNG 107 (712)
T ss_pred ccCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhcCccccCCCCCCccccchhhcc
Confidence 4556679999999999999999999999999999999999999999994 221111110 000 00 00000 0
Q ss_pred --hHHhHHHHHhhhchhhhhh---chhhch---hhhh---h-hHHh----------hhhhhcC--------------CCC
Q psy14584 290 --QELKHLILQAAEGFLQNHS---EIEKRR---RDKM---N-TYIT----------ELSAMVP--------------TLL 333 (563)
Q Consensus 290 --~el~~l~LqALdGFLlVvs---~Ily~S---e~ll---q-D~vh----------qlse~~~--------------~~L 333 (563)
---++++||+|+||+|||+ .|.|.| +++| | |+|| |-.|+-+ ..+
T Consensus 108 l~llege~lLqsLnGF~lVvt~eg~ifyAS~tIedYLGFhQSDV~HQsVYdlIHseDR~dfqrQLhwa~~ppq~~~s~q~ 187 (712)
T KOG3560|consen 108 LALLEGELLLQSLNGFALVVTAEGEIFYASATIEDYLGFHQSDVMHQSVYDLIHSEDRQDFQRQLHWAMDPPQVVFSQQP 187 (712)
T ss_pred ccccchHHHHHhcCCeEEEEecCceEEEehhhHHhhhcccccchhhhhHHHHhhhhhHHHHHHHHhhccCCchhhccCCC
Confidence 0124689999999999999 899988 6677 3 5544 2223211 111
Q ss_pred CCccCCC------------CCccccCCCCCceeEEeeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCC
Q psy14584 334 PVKTADI------------PAEVSRLCPGARRSFFCRMKCKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDT 401 (563)
Q Consensus 334 p~~~g~~------------~~~~~r~~~g~~RsFfcRMKctl~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~k~~~~~ 401 (563)
++.+|+. ++..+ .=.+|+|+||++|-|..
T Consensus 188 ~~e~~~~~~~~~~~~~d~~ppens---~yleRcficR~RCLLDn------------------------------------ 228 (712)
T KOG3560|consen 188 PLETGDDAILRAQEWGDGTPPENS---AYLERCFICRFRCLLDN------------------------------------ 228 (712)
T ss_pred ccccccccceeeeccCccCCcccc---hHHhhhheeeEEEeecC------------------------------------
Confidence 2112111 11111 11579999999999862
Q ss_pred ccccccccccccccccCCCcEEEEEEEeeeeecCCccCCCcccccCceeEeeeeccccccCccccCcccccCCCCCCCcc
Q psy14584 402 TTGAAASCHRKKKQQQSDRKYSVIQCTGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGETC 481 (563)
Q Consensus 402 ~~~~~~~~~~kk~~~~~~~~Y~VihctG~lk~~~p~~~g~~~~~~~~y~v~hctgYlk~w~p~g~~l~~~e~e~~d~~~~ 481 (563)
..+|--|...|.||..- |. ++| +++|- ...
T Consensus 229 -----------------TsGFLamdfqGklk~Lh----Gq-----kkk------------~~~g~------------~lp 258 (712)
T KOG3560|consen 229 -----------------TSGFLAMDFQGKLKFLH----GQ-----KKK------------APSGA------------MLP 258 (712)
T ss_pred -----------------Ccceeeeecccceeeec----CC-----ccc------------CCCCc------------cCC
Confidence 12344456667776642 11 111 12221 123
Q ss_pred ccceeEEEEeeccccccccccccCcCCcceeEEeecCCcEEEE-------------------------------------
Q psy14584 482 TLSCLVAVGRVLADKTRILNKQVNLRPIQFLSRHALDGKFLFV------------------------------------- 524 (563)
Q Consensus 482 ~~scLVaigr~~p~s~p~~~~ei~~~~~eFvsRHslDgKftfV------------------------------------- 524 (563)
+...|+|||-+..+ |+..|++.+...|-++|-+|+..+-+
T Consensus 259 P~LaLf~iatP~~p---PS~lEi~~k~~i~rtKhklDfa~vs~Dak~k~~lgy~eaEL~~m~gY~lvH~~D~~y~Aeah~ 335 (712)
T KOG3560|consen 259 PRLALFCIATPFLP---PSALEIKMKSAILRTKHKLDFALVSMDAKVKATLGYCEAELHGMPGYNLVHVEDKVYMAEAHS 335 (712)
T ss_pred CceeEEEEecCCCC---chhhhhhhhhhhhhcccccccceeccchhhhhhhccchhhccCCCccceeehhhhhhhhHHHH
Confidence 56789999988876 78889999999999999999887743
Q ss_pred ------------EEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEEE
Q psy14584 525 ------------YQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTL 561 (563)
Q Consensus 525 ------------YRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~V 561 (563)
||..+|+|.|-||||.+..+| ++.++++|||+|.-
T Consensus 336 e~iktgeSGmlvyR~qtk~grw~wvqssarlly--kngkPD~vi~thr~ 382 (712)
T KOG3560|consen 336 EGIKTGESGMLVYREQTKAGRWAWVQSSARLLY--KNGKPDLVIDTHRG 382 (712)
T ss_pred HHhhcCCcceEEEEEeecCCcEEEeeccceeee--ecCCCCEEEecCCC
Confidence 999999999999999999998 47899999999864
No 5
>KOG3753|consensus
Probab=99.79 E-value=2.5e-19 Score=199.73 Aligned_cols=242 Identities=22% Similarity=0.435 Sum_probs=169.3
Q ss_pred hhhhhhh-hHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhcccccc-----cCCC---CCCccchhHHh----
Q psy14584 227 KRRRDKM-NTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYT-----EGHY---KPAFLTDQELK---- 293 (563)
Q Consensus 227 RrRRdki-N~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~~~~~-----~~~~---~P~~l~~~el~---- 293 (563)
|.|-.++ ...+.||+..+|......+|++.+.+|..|+.+.++++++.+.++ ++.. .+..++-+|+.
T Consensus 104 ~~~t~~El~~~~~e~K~~~p~~~~~kg~~stl~~l~yal~cv~qv~anse~~q~~~~~eg~Pcg~d~s~ytveE~~a~tS 183 (1114)
T KOG3753|consen 104 RVRTHKELIKVLKELKVHLPAERRAKGKASTLATLKYALRCVKQVQANSEYYQLLSSSEGHPCGADVSMYTVEELEAITS 183 (1114)
T ss_pred hcchHHHHHHHHHHHHhhccccccCCCCchhhhhhHHHhhhhhhcccchHHHhhhhcccCCCCCCCccchhHHHhhhccC
Confidence 3344444 778999999999999999999999999999999999887666532 2211 11334445554
Q ss_pred HHHHHhhhchhhhhh----chhhchhh--hh-h------------hHHh--hhh----hhcCCCCCCcc-CCCCCccccC
Q psy14584 294 HLILQAAEGFLQNHS----EIEKRRRD--KM-N------------TYIT--ELS----AMVPTLLPVKT-ADIPAEVSRL 347 (563)
Q Consensus 294 ~l~LqALdGFLlVvs----~Ily~Se~--ll-q------------D~vh--qls----e~~~~~Lp~~~-g~~~~~~~r~ 347 (563)
++..+..|-|..+|+ +|||+++. ++ + |++| |+. -++...||.|. +..+....+.
T Consensus 184 e~~~kn~DsF~~~vS~~dG~iLyis~q~a~ilg~krDv~s~a~FvdflapqD~~vF~sfta~~~lp~ws~~s~~ds~~~~ 263 (1114)
T KOG3753|consen 184 EHTVKNADSFVVAVSFLDGRILYISEQAALILGCKRDVLSSAKFVDFLAPQDVGVFYSFTARYKLPLWSMGSSADSFTQE 263 (1114)
T ss_pred CCccccccceEEEEeccCCcEEEeechhhhhccCchhhhccchhhhhcchhhhhhhhhccccccCccccccccccchhhh
Confidence 367788999999999 99999933 33 3 4555 333 22445677775 2223333455
Q ss_pred CCCCceeEEeeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccccccccccccccCCCcEEEEEE
Q psy14584 348 CPGARRSFFCRMKCKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQQSDRKYSVIQC 427 (563)
Q Consensus 348 ~~g~~RsFfcRMKctl~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~kk~~~~~~~~Y~Vihc 427 (563)
|. ..|+||||+..+..- +. ...|.-+..
T Consensus 264 c~-~~ks~fcRisgr~~~------------------------------~~---------------------~~~y~PFRl 291 (1114)
T KOG3753|consen 264 CA-EEKSFFCRISGRKDR------------------------------EN---------------------EIRYHPFRL 291 (1114)
T ss_pred hh-hhcceeeeeecccCC------------------------------cC---------------------ccccCcccc
Confidence 53 479999999766541 10 122333334
Q ss_pred EeeeeecCCccCCCcccccCceeEeeeeccccccCccccCcccccCCCCCCCccccceeEEEEeeccccccccccccCcC
Q psy14584 428 TGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGETCTLSCLVAVGRVLADKTRILNKQVNLR 507 (563)
Q Consensus 428 tG~lk~~~p~~~g~~~~~~~~y~v~hctgYlk~w~p~g~~l~~~e~e~~d~~~~~~scLVaigr~~p~s~p~~~~ei~~~ 507 (563)
+=||...... .+......||+.+.|+.--. ....|+.+
T Consensus 292 ~pyl~ev~~~---------------------------------------~~~~s~~ccLllaerihSgY---eAPrIps~ 329 (1114)
T KOG3753|consen 292 TPYLVEVRDQ---------------------------------------QGAESQPCCLLLAERIHSGY---EAPRIPSN 329 (1114)
T ss_pred cceeEEeccc---------------------------------------cccCcCcceeehhhhhhccc---ccCcCCcc
Confidence 4444432210 01112356898888855442 34477777
Q ss_pred CcceeEEeecCCcEEEE----------------------------------------------------EEEEeeCCcEE
Q psy14584 508 PIQFLSRHALDGKFLFV----------------------------------------------------YQFKNKGGTYV 535 (563)
Q Consensus 508 ~~eFvsRHslDgKftfV----------------------------------------------------YRfl~K~GgyV 535 (563)
...|+|||+..+.|+.| |||++.||.||
T Consensus 330 KriFtT~HTptClf~hVDeaAVp~LGyLPqDLIG~sil~f~H~eDr~vm~q~H~~v~q~~G~p~F~~sp~Rf~aqNG~yv 409 (1114)
T KOG3753|consen 330 KRIFTTTHTPTCLFQHVDEAAVPLLGYLPQDLIGTSILAFVHPEDRHVMVQIHQKVLQSGGKPVFSHSPIRFCAQNGSYV 409 (1114)
T ss_pred cceeEeccCCcceeeecchhhhhhhccCchhhhccchhhhhcCCchHHHHHHHHHHHHhCCCCcccccceeeeecCCcEE
Confidence 78999999999999988 99999999999
Q ss_pred EEEeEEEEeecCCCCCccEEEEEEEEc
Q psy14584 536 QLQSEWKNFRNPWTKDIEYLISKNTLI 562 (563)
Q Consensus 536 wlqT~~t~f~Np~s~~~e~IVcvn~Vi 562 (563)
.++|+|+.|+|||++|++|||+-|.|-
T Consensus 410 ~ldTeWSsFVNPWSRKieFVvGRHrVr 436 (1114)
T KOG3753|consen 410 RLDTEWSSFVNPWSRKIEFVVGRHRVR 436 (1114)
T ss_pred EEechhhhccChhhhheeeeeeeceee
Confidence 999999999999999999999999984
No 6
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=99.69 E-value=5.5e-17 Score=144.65 Aligned_cols=55 Identities=42% Similarity=0.832 Sum_probs=52.2
Q ss_pred cceeEEeecCCcEEEE---------------------------------------------------EEEEeeCCcEEEE
Q psy14584 509 IQFLSRHALDGKFLFV---------------------------------------------------YQFKNKGGTYVQL 537 (563)
Q Consensus 509 ~eFvsRHslDgKftfV---------------------------------------------------YRfl~K~GgyVwl 537 (563)
.+|+|||++||||+|| |||++|+|+||||
T Consensus 2 ~~F~trhs~dgki~~~d~~~v~~~lgy~~~eLvG~s~y~~~H~~D~~~~~~~~~~~~~~~g~~~~~~yR~~~k~g~~vwv 81 (111)
T PF14598_consen 2 EEFTTRHSLDGKITYVDSRAVSSLLGYLPEELVGRSIYDFVHPDDLQRVLKQHHREVLQKGQSVSPYYRFRTKNGGYVWV 81 (111)
T ss_dssp -EEEEEEETTSBEEEEETTHHHHHHSS-HHHHTTSBGGGGBSCCTHHHHHHHHHHHHHHHSSEEEEEEEEE-TTSSEEEE
T ss_pred ceEEEEECCCcEEEEEcCccChhhcCCCcHHHcCCchHHhCCHhhhhhHHHHHHHHHhhCCCcCcceEEEEecCCcEEEE
Confidence 5899999999999999 9999999999999
Q ss_pred EeEEEEeecCCCCCccEEEEEEEEcC
Q psy14584 538 QSEWKNFRNPWTKDIEYLISKNTLIL 563 (563)
Q Consensus 538 qT~~t~f~Np~s~~~e~IVcvn~Vis 563 (563)
||+|++|+|||++++++|||+|+||+
T Consensus 82 qt~~~~~~n~~~~~~~~Iv~~n~vls 107 (111)
T PF14598_consen 82 QTKATLFYNPWTSKPEFIVCTNTVLS 107 (111)
T ss_dssp EEEEEEEEETTTTCEEEEEEEEEEES
T ss_pred EEEEEEEECCCCCCccEEEEEEEEec
Confidence 99999999999999999999999986
No 7
>KOG1318|consensus
Probab=99.32 E-value=7.4e-13 Score=141.08 Aligned_cols=96 Identities=25% Similarity=0.440 Sum_probs=78.2
Q ss_pred CceeeccChhhHhhhhhhcccCCCCcccccccccccccccC-CcccccccchhhhhhhhhhhHHHHHHHhcCCCcccccC
Q psy14584 174 QSWFDILHPKDVAKVKEQLFSSDLSPRERLIDVKSKQVIVG-LPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSR 252 (563)
Q Consensus 174 ~S~yd~~hP~D~~kvkEQlSSr~iaPRer~idaKSkq~~~~-~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~ 252 (563)
++|+.+.++.|.++...+ .++.+++.. ++...... ++.||++||++|||||++||.||.||..|||.|.....
T Consensus 194 ~~~~~~~~~~~~~s~~s~---~~~~~rt~~---~~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~ 267 (411)
T KOG1318|consen 194 GQFNVPMTGHDSASCPSQ---LSIGPRTHP---KTDATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDM 267 (411)
T ss_pred CCCCCCCCccccccCccc---cCCCCCCCC---CcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchh
Confidence 568999999998887766 455566555 22211111 46699999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHhhccc
Q psy14584 253 KLDKLTVLRMAVQHLKTIRGAVH 275 (563)
Q Consensus 253 KldKasILr~ai~yIk~L~~~~~ 275 (563)
++.|++||..+|+|||.|+...+
T Consensus 268 ~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 268 KSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred hcccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999886444
No 8
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.17 E-value=2.3e-11 Score=95.41 Aligned_cols=54 Identities=41% Similarity=0.732 Sum_probs=49.4
Q ss_pred cccccchhhhhhhhhhhHHHHHHHhcCCCc-ccccCCccHHHHHHHHHHHHHHHh
Q psy14584 218 SRQNHSEIEKRRRDKMNTYITELSAMVPMC-HAMSRKLDKLTVLRMAVQHLKTIR 271 (563)
Q Consensus 218 rre~h~~aERrRRdkiN~~i~eL~~lLP~~-~~~~~KldKasILr~ai~yIk~L~ 271 (563)
+|++|+.+||+||++||..|.+|+.+||.+ .....|++|++||+.||+||+.|+
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999996 346788999999999999999874
No 9
>KOG3561|consensus
Probab=99.08 E-value=3.9e-11 Score=136.80 Aligned_cols=84 Identities=32% Similarity=0.428 Sum_probs=75.6
Q ss_pred ccCcccCCCccCCCCCCcccccchhhhhhh-hhhcCCceeEEeccccee------------eeCccccCCceeeccChhh
Q psy14584 118 STSTYVEDGQIPSSSVHPMEYQQADSTRKS-KKRKGGSSFQHGCAISDL------------SAQGELLGQSWFDILHPKD 184 (563)
Q Consensus 118 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l-~q~~dGfl~v~~~~~g~i------------~sq~~~tG~S~yd~~hP~D 184 (563)
+.+.++++.|||+|+.+ +||.|| |+|||||||||+|+ |.| |.|.||+|+++|+.+||.|
T Consensus 77 ~~~~~~~~d~KpSflS~-------~eL~~LmLeAlDGF~fvV~cd-G~IvyVSeSVT~~L~y~QsDL~~qSly~ilhp~d 148 (803)
T KOG3561|consen 77 SENSSIDQDYKPSFLSN-------DELTHLILEALDGFLFVVNCD-GRIVYVSESVTSVLGYLQSDLMGQSLYDILHPLD 148 (803)
T ss_pred cccccccccccccccch-------HHHHHHHHHHhcCeEEEEecC-ceEEEEecchHHhhCcCHHHHhcchHHHhcCccc
Confidence 58899999999999999 899999 99999999999999 888 8999999999999999999
Q ss_pred Hhhhhhhcc--cCCCCccccccccccc
Q psy14584 185 VAKVKEQLF--SSDLSPRERLIDVKSK 209 (563)
Q Consensus 185 ~~kvkEQlS--Sr~iaPRer~idaKSk 209 (563)
..+.++|+. .-+.....|.++.+.+
T Consensus 149 ~~~~~~ql~~r~~e~~f~~r~l~~~~~ 175 (803)
T KOG3561|consen 149 NDKPREQLSPRSNEHTFNCRLLDGKTG 175 (803)
T ss_pred cCcccccccccccccccchhhhccCCC
Confidence 999999998 4445666677777665
No 10
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=98.99 E-value=4.7e-10 Score=88.41 Aligned_cols=56 Identities=34% Similarity=0.547 Sum_probs=51.1
Q ss_pred ccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhc
Q psy14584 217 VSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGA 273 (563)
Q Consensus 217 ~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~ 273 (563)
.+|..|+.+||+||++||..|.+|+.+||... ...|+||++||+.||+||+.|+..
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~-~~~k~~k~~iL~~a~~yI~~L~~~ 58 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLP-PSKKLSKAEILRKAVDYIKSLQEL 58 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999865 568999999999999999998754
No 11
>smart00353 HLH helix loop helix domain.
Probab=98.89 E-value=2.6e-09 Score=82.64 Aligned_cols=51 Identities=31% Similarity=0.574 Sum_probs=46.2
Q ss_pred chhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhcc
Q psy14584 223 SEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAV 274 (563)
Q Consensus 223 ~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~ 274 (563)
|.+||+||++||..|.+|+.+||.+. ...|+||++||..|++||+.|++..
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~-~~~k~~k~~iL~~ai~yi~~L~~~~ 51 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLP-NNKKLSKAEILRLAIEYIKSLQEEL 51 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999765 6789999999999999999988643
No 12
>KOG4304|consensus
Probab=98.78 E-value=3.2e-09 Score=107.77 Aligned_cols=91 Identities=21% Similarity=0.384 Sum_probs=67.8
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHhcCCCccc----ccCCccHHHHHHHHHHHHHHHhhcccccccCCCCCCccchh
Q psy14584 215 LPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHA----MSRKLDKLTVLRMAVQHLKTIRGAVHSYTEGHYKPAFLTDQ 290 (563)
Q Consensus 215 ~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~----~~~KldKasILr~ai~yIk~L~~~~~~~~~~~~~P~~l~~~ 290 (563)
+..||.++..+|||||++||++|.||+.|||.+.. ...||+|+.||.+||.|||+|+.......... + ..
T Consensus 29 ~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~~~~--~----~~ 102 (250)
T KOG4304|consen 29 RQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAAQAA--P----AA 102 (250)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccccccc--c----cc
Confidence 45588999999999999999999999999999853 34899999999999999999986544322110 0 00
Q ss_pred HHhHHHHHhhhchhhhhhchhhch
Q psy14584 291 ELKHLILQAAEGFLQNHSEIEKRR 314 (563)
Q Consensus 291 el~~l~LqALdGFLlVvs~Ily~S 314 (563)
..+-....||.-|+.+|..|.
T Consensus 103 ---~~~d~f~~Gf~ec~~EVsr~l 123 (250)
T KOG4304|consen 103 ---LPVDSFRAGFRECAAEVSRYL 123 (250)
T ss_pred ---ccchhhhccHHHHHHHHHHHH
Confidence 012234579999988665554
No 13
>KOG1319|consensus
Probab=98.60 E-value=2.1e-08 Score=96.94 Aligned_cols=62 Identities=23% Similarity=0.424 Sum_probs=55.8
Q ss_pred ccCCcccccccchhhhhhhhhhhHHHHHHHhcCCCcccc---cCCccHHHHHHHHHHHHHHHhhc
Q psy14584 212 IVGLPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAM---SRKLDKLTVLRMAVQHLKTIRGA 273 (563)
Q Consensus 212 ~~~~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~---~~KldKasILr~ai~yIk~L~~~ 273 (563)
..++++||++|-.+|++|||.||..+..|+.|||.|... ..|++||.||.+||+||..|+.+
T Consensus 56 ~syk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~ 120 (229)
T KOG1319|consen 56 ESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKE 120 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999999999743 34999999999999999998753
No 14
>KOG3558|consensus
Probab=98.36 E-value=2e-07 Score=104.21 Aligned_cols=58 Identities=28% Similarity=0.217 Sum_probs=50.5
Q ss_pred hhhhhhhhcCCceeEEeccccee-----------eeCccccCCceeeccChhhHhhhhhhcccCCCCcc
Q psy14584 143 STRKSKKRKGGSSFQHGCAISDL-----------SAQGELLGQSWFDILHPKDVAKVKEQLFSSDLSPR 200 (563)
Q Consensus 143 ~~~~l~q~~dGfl~v~~~~~g~i-----------~sq~~~tG~S~yd~~hP~D~~kvkEQlSSr~iaPR 200 (563)
--.|+||++|||+|||+.|+.++ ++|.|+||+|+||++||.|++++++||+-+.-.|+
T Consensus 120 l~~~iLqsLDGFVm~l~~dG~~lYiSEtVS~yLGLSQvELTG~SvFDfiHP~DheE~~eqL~l~~~~p~ 188 (768)
T KOG3558|consen 120 LGDHILQSLDGFVMALTQDGDFLYISETVSIYLGLSQVELTGSSVFDFIHPCDHEEIAEQLGLRLTTPE 188 (768)
T ss_pred hhhhHHhhccceEEEEccCCCEEEEechhHhhhCccceeeecchhhhccCccCHHHHHHHhccccCCCc
Confidence 34678999999999999995555 99999999999999999999999999986665444
No 15
>KOG3559|consensus
Probab=97.67 E-value=1.8e-05 Score=84.50 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=46.3
Q ss_pred hhhhhhhhhcCCceeEEeccccee------------eeCccccCCceeeccChhhHhhhhhhccc
Q psy14584 142 DSTRKSKKRKGGSSFQHGCAISDL------------SAQGELLGQSWFDILHPKDVAKVKEQLFS 194 (563)
Q Consensus 142 ~~~~~l~q~~dGfl~v~~~~~g~i------------~sq~~~tG~S~yd~~hP~D~~kvkEQlSS 194 (563)
+--.||||.+|||+|||..+ |+| ++|.+++|.+.|+++||.|+.++...|..
T Consensus 79 elgshlLqtLDGF~fvva~d-GkimYISETaSvhLGLSQVElTGNsi~eYIH~~D~demna~L~~ 142 (598)
T KOG3559|consen 79 ELGSHLLQTLDGFIFVVAPD-GKIMYISETASVHLGLSQVELTGNSIYEYIHPQDHDEMNAVLTA 142 (598)
T ss_pred HHHHhHHHhhcceEEEEeCC-CCEEEEecceeeeecceeeEeecchhhhhhcccchHHHHHHHhh
Confidence 44578999999999999997 777 99999999999999999999998887653
No 16
>KOG4029|consensus
Probab=97.25 E-value=0.00018 Score=72.04 Aligned_cols=59 Identities=27% Similarity=0.415 Sum_probs=52.0
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhc
Q psy14584 215 LPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGA 273 (563)
Q Consensus 215 ~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~ 273 (563)
....|..+|..||.|=..+|..|.+|+.+||.......|++|..+||+|+.||+.|...
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~l 164 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKL 164 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHH
Confidence 34467788888999999999999999999998765589999999999999999987743
No 17
>KOG0561|consensus
Probab=97.18 E-value=0.00026 Score=73.38 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=51.8
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhcc
Q psy14584 215 LPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAV 274 (563)
Q Consensus 215 ~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~ 274 (563)
++.||+--|--||||..-||..|..|+.|||.. ...||+||.||+-|.+||.+|.+..
T Consensus 57 rRmRReIANsNERRRMQSINAGFqsLr~LlPr~--eGEKLSKAAILQQTa~yI~~Le~~K 114 (373)
T KOG0561|consen 57 RRMRREIANSNERRRMQSINAGFQSLRALLPRK--EGEKLSKAAILQQTADYIHQLEGHK 114 (373)
T ss_pred HHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcc--cchhhHHHHHHHHHHHHHHHHHhcc
Confidence 456899999999999999999999999999974 4569999999999999999987543
No 18
>KOG3560|consensus
Probab=96.98 E-value=0.00032 Score=77.41 Aligned_cols=48 Identities=19% Similarity=0.312 Sum_probs=44.1
Q ss_pred hhhhhhcCCceeEEeccccee------------eeCccccCCceeeccChhhHhhhhhhcc
Q psy14584 145 RKSKKRKGGSSFQHGCAISDL------------SAQGELLGQSWFDILHPKDVAKVKEQLF 193 (563)
Q Consensus 145 ~~l~q~~dGfl~v~~~~~g~i------------~sq~~~tG~S~yd~~hP~D~~kvkEQlS 193 (563)
.-|||+++||++||+|+ |.| |.|+|.+.|++||++|..|.+.+..||-
T Consensus 114 e~lLqsLnGF~lVvt~e-g~ifyAS~tIedYLGFhQSDV~HQsVYdlIHseDR~dfqrQLh 173 (712)
T KOG3560|consen 114 ELLLQSLNGFALVVTAE-GEIFYASATIEDYLGFHQSDVMHQSVYDLIHSEDRQDFQRQLH 173 (712)
T ss_pred HHHHHhcCCeEEEEecC-ceEEEehhhHHhhhcccccchhhhhHHHHhhhhhHHHHHHHHh
Confidence 56899999999999999 555 8999999999999999999999999974
No 19
>KOG2588|consensus
Probab=96.82 E-value=0.00076 Score=78.68 Aligned_cols=57 Identities=37% Similarity=0.505 Sum_probs=52.1
Q ss_pred cccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhccc
Q psy14584 216 PVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVH 275 (563)
Q Consensus 216 ~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~~ 275 (563)
..+|.+||.+|||-|..||+.|.||+.+||. ...|+.|.++||.|++||+.+.+.+.
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g---~~aKl~kSavLr~ai~~i~dl~~~nq 330 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPG---TEAKLNKSAVLRKAIDYIEDLQGYNQ 330 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCc---cHhhhhhhhhHHHHHHHHHHhhcccc
Confidence 5789999999999999999999999999995 46699999999999999999876554
No 20
>KOG2483|consensus
Probab=96.77 E-value=0.0016 Score=65.90 Aligned_cols=58 Identities=28% Similarity=0.519 Sum_probs=49.3
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhc
Q psy14584 215 LPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGA 273 (563)
Q Consensus 215 ~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~ 273 (563)
....|+.||+.||+||+.+-.+|..|+..||.-..... -..++||.+|+.||+.++..
T Consensus 56 ~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~-~t~lsiL~kA~~~i~~l~~~ 113 (232)
T KOG2483|consen 56 AASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETR-STTLSILDKALEHIQSLERK 113 (232)
T ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcch-hhhhHhhhhHHHHHHHHHhH
Confidence 56699999999999999999999999999997543322 23899999999999998743
No 21
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=96.20 E-value=0.01 Score=48.90 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=33.3
Q ss_pred cEEEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEE
Q psy14584 520 KFLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKN 559 (563)
Q Consensus 520 KftfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn 559 (563)
.+.+-||++.++|.|+|++..+..++ ..+.++..++|||
T Consensus 53 ~~~~e~R~~~~~G~~~wi~~~~~~~~-d~~g~~~~~~Gv~ 91 (91)
T PF08447_consen 53 PFEIEYRIRRKDGEYRWIEVRGRPIF-DENGKPIRIIGVI 91 (91)
T ss_dssp EEEEEEEEEGTTSTEEEEEEEEEEEE-TTTS-EEEEEEEE
T ss_pred ceEEEEEEECCCCCEEEEEEEEEEEE-CCCCCEEEEEEEC
Confidence 44555999999999999999999999 5578999999986
No 22
>KOG3960|consensus
Probab=95.16 E-value=0.05 Score=55.67 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=46.0
Q ss_pred cccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhh
Q psy14584 216 PVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRG 272 (563)
Q Consensus 216 ~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~ 272 (563)
-.||.+-..-||||=.|+|+.|+.|+.---. .-.++|-|-.|||-||+||..|++
T Consensus 116 vDRRKAATMRERRRLkKVNEAFE~LKRrT~~--NPNQRLPKVEILRsAI~YIE~Lq~ 170 (284)
T KOG3960|consen 116 VDRRKAATMRERRRLKKVNEAFETLKRRTSS--NPNQRLPKVEILRSAIRYIERLQA 170 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CccccccHHHHHHHHHHHHHHHHH
Confidence 4477777888999999999999999975432 346789999999999999998764
No 23
>PLN03217 transcription factor ATBS1; Provisional
Probab=95.11 E-value=0.026 Score=48.95 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=40.3
Q ss_pred hhhhhhhhhHHHHHHHhcCCCccc--ccCCccHHHHHHHHHHHHHHHhhc
Q psy14584 226 EKRRRDKMNTYITELSAMVPMCHA--MSRKLDKLTVLRMAVQHLKTIRGA 273 (563)
Q Consensus 226 ERrRRdkiN~~i~eL~~lLP~~~~--~~~KldKasILr~ai~yIk~L~~~ 273 (563)
.|-=-|+||+.+.+|..+||.... ...|.+-+.||+.||.|||.|+..
T Consensus 15 ~risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrE 64 (93)
T PLN03217 15 SRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHRE 64 (93)
T ss_pred CCCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHH
Confidence 344458999999999999998643 466889999999999999998854
No 24
>KOG3910|consensus
Probab=90.90 E-value=0.15 Score=56.50 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=50.2
Q ss_pred cccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhcc
Q psy14584 216 PVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAV 274 (563)
Q Consensus 216 ~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~ 274 (563)
++||.+.|..||-|=.-||+.|+||-.|.-.........-|+.||-.||+-|-.|.+|.
T Consensus 524 kERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQV 582 (632)
T KOG3910|consen 524 KERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQV 582 (632)
T ss_pred HHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHH
Confidence 44888888889988889999999999998877665566799999999999999877553
No 25
>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Probab=89.90 E-value=1.9 Score=26.12 Aligned_cols=36 Identities=17% Similarity=0.358 Sum_probs=28.0
Q ss_pred EEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEEE
Q psy14584 525 YQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTL 561 (563)
Q Consensus 525 YRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~V 561 (563)
+++..++|.++|+++.+..+.+. +..+..++++..-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d 39 (43)
T smart00086 4 YRLRRKDGSYIWVLVSASPIRDE-DGEVEGILGVVRD 39 (43)
T ss_pred EEEEecCCCEEEEEEEeEEEECC-CCCEEEEEEEEEe
Confidence 56788899999999999988873 4566677776543
No 26
>KOG3898|consensus
Probab=88.68 E-value=0.3 Score=50.31 Aligned_cols=57 Identities=23% Similarity=0.386 Sum_probs=51.5
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhh
Q psy14584 215 LPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRG 272 (563)
Q Consensus 215 ~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~ 272 (563)
...||.+-|.-||+|....|..++.|+++||. .....|+.|+..|++|-.||-.+..
T Consensus 69 ~~~rR~kaNaRER~RMH~LNdAld~LReviP~-~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 69 LTLRRLKANARERTRMHDLNDALDALREVIPH-GLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hhhhcccccchhhccccchhHHHHHhHhhccC-cCCCCCCCcchhHHhhhcchhhhcc
Confidence 45589999999999999999999999999996 6678899999999999999997654
No 27
>KOG4395|consensus
Probab=88.24 E-value=0.59 Score=48.12 Aligned_cols=75 Identities=24% Similarity=0.248 Sum_probs=57.3
Q ss_pred CCCCccccccccccc-ccccCCcccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHH
Q psy14584 195 SDLSPRERLIDVKSK-QVIVGLPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTI 270 (563)
Q Consensus 195 r~iaPRer~idaKSk-q~~~~~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L 270 (563)
++.+++.+....+.. +-.+-+..||.+.|..||+|-..+|..|+.|+..+|.. ....||+|-..|++|-.||-.|
T Consensus 150 ~t~aa~s~~~sn~~~~~~e~v~~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~-~~d~~LSkyetLqmaq~yi~~l 225 (285)
T KOG4395|consen 150 ATRAARSDLESNKPAKQSQSVNSHRRLAANARERRRMNGLNSAFDRLRLVVPDG-DSDKKLSKYETLQMAQGYILAL 225 (285)
T ss_pred ccccccccccccccccchhhHHHhhhcccchHHHHHhhhHHHHHHHHHHhcCCC-CccchhhhhhHHHHHHHHHhhh
Confidence 344555544432211 22233567999999999999999999999999999964 4567999999999999999864
No 28
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=80.54 E-value=0.8 Score=40.94 Aligned_cols=25 Identities=36% Similarity=0.749 Sum_probs=21.1
Q ss_pred eeCccccCCceeeccChhhHhh-hhh
Q psy14584 166 SAQGELLGQSWFDILHPKDVAK-VKE 190 (563)
Q Consensus 166 ~sq~~~tG~S~yd~~hP~D~~k-vkE 190 (563)
|.+.|++|.++|+++||+|+.. +++
T Consensus 28 y~~~eLvG~s~y~~~H~~D~~~~~~~ 53 (111)
T PF14598_consen 28 YLPEELVGRSIYDFVHPDDLQRVLKQ 53 (111)
T ss_dssp S-HHHHTTSBGGGGBSCCTHHHHHHH
T ss_pred CCcHHHcCCchHHhCCHhhhhhHHHH
Confidence 7788999999999999999886 554
No 29
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=78.39 E-value=1.9 Score=35.83 Aligned_cols=44 Identities=25% Similarity=0.431 Sum_probs=36.4
Q ss_pred hhhhhhhhhcCCceeEEeccccee------------eeCccccCCceeeccChhhHh
Q psy14584 142 DSTRKSKKRKGGSSFQHGCAISDL------------SAQGELLGQSWFDILHPKDVA 186 (563)
Q Consensus 142 ~~~~~l~q~~dGfl~v~~~~~g~i------------~sq~~~tG~S~yd~~hP~D~~ 186 (563)
|.++.+++.+.-.++++..+ |.| +++.+++|.++++.+||.|..
T Consensus 1 e~~~~i~~~~~~~i~~~d~~-g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~~ 56 (113)
T PF00989_consen 1 ERYRAILENSPDGIFVIDED-GRILYVNQAAEELLGYSREELIGKSLFDLIHPEDRR 56 (113)
T ss_dssp HHHHHHHHCSSSEEEEEETT-SBEEEECHHHHHHHSS-HHHHTTSBGGGGCSGGGHH
T ss_pred CHHHHHHhcCCceEEEEeCc-CeEEEECHHHHHHHccCHHHHcCCcHHHhcCchhhH
Confidence 34678899999999999954 888 778899999999999998643
No 30
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=59.39 E-value=56 Score=26.85 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=26.1
Q ss_pred EEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEE
Q psy14584 525 YQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISK 558 (563)
Q Consensus 525 YRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcv 558 (563)
.++..++|+.+|++..+..+++... ++.+++|+
T Consensus 77 ~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~ 109 (113)
T PF00989_consen 77 VRFRLRDGRPRWVEVRASPVRDEDG-QIIGILVI 109 (113)
T ss_dssp EEEEETTSCEEEEEEEEEEEEETTE-EEEEEEEE
T ss_pred EEEEecCCcEEEEEEEEEEEEeCCC-CEEEEEEE
Confidence 7777789999999999999999754 34466654
No 31
>KOG4447|consensus
Probab=58.21 E-value=4.3 Score=39.16 Aligned_cols=52 Identities=23% Similarity=0.369 Sum_probs=45.2
Q ss_pred cccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHh
Q psy14584 218 SRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIR 271 (563)
Q Consensus 218 rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~ 271 (563)
.|--||.-||.|-..+|+.|..|+.++|.- .+.|++|+-.|++|..||-.+-
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptl--PsdklSkiqtLklA~ryidfl~ 129 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTL--PSDKLSKIQTLKLAARYIDFLY 129 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCC--CccccccccchhhcccCCchhh
Confidence 456788899999999999999999999974 3568999999999999998654
No 32
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=56.39 E-value=88 Score=25.10 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=27.3
Q ss_pred EEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEE
Q psy14584 525 YQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISK 558 (563)
Q Consensus 525 YRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcv 558 (563)
.++..++|..+|++...+.+.|.. +++.++|++
T Consensus 66 ~~~~~~~g~~~~~~~~~~~i~~~~-g~~~~~i~~ 98 (104)
T PF13426_consen 66 VRLRRKDGETFWVEVSASPIRDED-GEITGIIGI 98 (104)
T ss_dssp EEEEETTSEEEEEEEEEEEEEETT-SSEEEEEEE
T ss_pred EEEEcCCCCEEEEEEEEEEEECCC-CCEEEEEEE
Confidence 788899999999999999999985 555566654
No 33
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=27.37 E-value=1.8e+02 Score=20.18 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=26.1
Q ss_pred EEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEE
Q psy14584 522 LFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISK 558 (563)
Q Consensus 522 tfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcv 558 (563)
.+-+++...+|.++|+......+.+... +...++++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 99 (103)
T cd00130 64 TLEVRLRRKDGSVIWVLVSLTPIRDEGG-EVIGLLGV 99 (103)
T ss_pred EEEEEEEccCCCEEEEEEEEEEEecCCC-CEEEEEEE
Confidence 3447888889999999999888887653 34445443
Done!