Query psy14584
Match_columns 563
No_of_seqs 319 out of 718
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 23:38:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3l_B BMAL1B; BHLH, PAS, circ 100.0 2.7E-49 9.3E-54 415.0 20.5 284 215-563 10-382 (387)
2 4f3l_A Mclock, circadian locom 100.0 8.6E-41 2.9E-45 346.6 22.8 269 215-563 9-354 (361)
3 4dj3_A Period circadian protei 100.0 9.1E-36 3.1E-40 307.0 20.3 206 120-563 6-280 (317)
4 4dj2_A Period circadian protei 100.0 2.9E-35 1E-39 303.6 18.8 203 125-563 11-281 (320)
5 3gdi_A Period circadian protei 100.0 1.7E-32 5.8E-37 281.6 17.9 77 484-563 143-270 (309)
6 3rty_A Period circadian protei 99.9 1.1E-22 3.7E-27 211.3 18.3 81 483-563 128-262 (339)
7 1oj5_A Steroid receptor coacti 99.8 1.3E-18 4.6E-23 158.7 8.4 57 507-563 5-113 (132)
8 4h10_A ARYL hydrocarbon recept 99.4 3.7E-14 1.3E-18 117.5 2.3 59 215-273 6-64 (73)
9 4h10_B Circadian locomoter out 99.3 3.3E-13 1.1E-17 111.2 3.8 56 216-274 6-61 (71)
10 1a0a_A BHLH, protein (phosphat 99.3 6.9E-13 2.4E-17 106.8 4.5 57 218-274 2-61 (63)
11 1an4_A Protein (upstream stimu 99.3 9.9E-13 3.4E-17 105.9 2.5 60 215-274 2-63 (65)
12 4ati_A MITF, microphthalmia-as 99.2 7.6E-12 2.6E-16 112.3 4.7 61 215-275 24-84 (118)
13 3u5v_A Protein MAX, transcript 99.1 5.6E-11 1.9E-15 99.1 3.7 60 215-274 2-61 (76)
14 1am9_A Srebp-1A, protein (ster 99.1 5.3E-11 1.8E-15 100.3 3.5 57 216-275 4-60 (82)
15 1nkp_B MAX protein, MYC proto- 99.0 1.2E-10 4E-15 98.1 3.5 56 218-275 2-57 (83)
16 1hlo_A Protein (transcription 99.0 2.5E-10 8.5E-15 95.6 3.8 57 216-274 10-66 (80)
17 1nkp_A C-MYC, MYC proto-oncoge 98.9 6.6E-10 2.3E-14 94.9 4.0 58 216-274 4-61 (88)
18 1nlw_A MAD protein, MAX dimeri 98.7 5.4E-09 1.9E-13 87.8 4.3 55 219-274 2-56 (80)
19 1mdy_A Protein (MYOD BHLH doma 98.7 8.9E-09 3.1E-13 84.1 4.6 56 216-273 10-65 (68)
20 2ql2_B Neurod1, neurogenic dif 98.6 2.1E-08 7.2E-13 80.0 4.6 55 218-273 2-56 (60)
21 4f3l_B BMAL1B; BHLH, PAS, circ 98.5 3.9E-08 1.3E-12 103.0 3.3 84 119-209 69-165 (387)
22 2lfh_A DNA-binding protein inh 98.4 2.6E-07 8.9E-12 75.3 4.8 52 220-272 16-67 (68)
23 4ath_A MITF, microphthalmia-as 98.4 3E-07 1E-11 77.7 5.0 46 230-275 4-49 (83)
24 2kdk_A ARYL hydrocarbon recept 98.3 2.8E-06 9.7E-11 70.1 9.3 39 525-563 79-117 (121)
25 3f1p_A Endothelial PAS domain- 98.2 3.7E-06 1.3E-10 69.4 8.4 58 506-563 6-112 (117)
26 3f1p_B ARYL hydrocarbon recept 98.2 7.5E-06 2.6E-10 68.1 9.2 39 525-563 78-116 (121)
27 4f3l_A Mclock, circadian locom 97.8 1.2E-05 4.1E-10 83.1 3.7 68 120-195 70-150 (361)
28 4aya_A DNA-binding protein inh 97.6 7.4E-05 2.5E-09 64.9 5.5 50 223-273 30-79 (97)
29 4dj2_A Period circadian protei 96.9 8.6E-05 2.9E-09 76.5 -1.8 49 282-330 13-86 (320)
30 2vlg_A Sporulation kinase A; h 96.5 0.00091 3.1E-08 57.5 2.0 46 146-192 3-60 (111)
31 2vlg_A Sporulation kinase A; h 96.4 0.0072 2.5E-07 51.8 7.4 37 525-561 71-107 (111)
32 4dj3_A Period circadian protei 96.3 0.00041 1.4E-08 71.3 -1.3 33 283-315 14-54 (317)
33 3gdi_A Period circadian protei 94.1 0.0056 1.9E-07 62.6 -1.5 70 293-363 17-112 (309)
34 3h9w_A Diguanylate cyclase wit 92.7 0.19 6.6E-06 40.6 6.0 41 521-562 66-106 (115)
35 3mr0_A Sensory box histidine k 84.6 1.5 5.3E-05 37.0 5.9 40 520-560 81-120 (142)
36 3f1p_B ARYL hydrocarbon recept 78.3 0.9 3.1E-05 36.9 2.0 44 147-191 7-62 (121)
37 3icy_A Sensor protein; sensory 72.4 8.7 0.0003 29.8 6.4 38 521-559 77-114 (118)
38 3nja_A Probable ggdef family p 70.9 9.7 0.00033 29.6 6.3 39 521-560 80-118 (125)
39 3f1p_A Endothelial PAS domain- 68.2 2 6.9E-05 34.4 1.7 26 166-191 34-59 (117)
40 3mfx_A Sensory BOX/ggdef famil 61.4 3.2 0.00011 35.8 1.8 52 136-188 1-64 (129)
41 2gj3_A Nitrogen fixation regul 60.2 45 0.0015 26.5 8.6 36 523-559 78-113 (120)
42 4eet_B Phototropin-2; LOV, blu 58.0 57 0.0019 24.5 8.5 37 522-559 72-108 (115)
43 3ue6_A Aureochrome1; PAS/LOV d 55.5 40 0.0014 27.8 7.7 36 522-558 110-145 (166)
44 3eeh_A Putative light and redo 53.8 20 0.00067 27.3 5.1 40 520-560 83-122 (125)
45 3icy_A Sensor protein; sensory 52.3 9.4 0.00032 29.6 3.0 51 141-191 3-66 (118)
46 3p7n_A Sensor histidine kinase 50.7 62 0.0021 29.9 8.9 35 525-560 141-175 (258)
47 2kdk_A ARYL hydrocarbon recept 49.7 5.4 0.00019 31.7 1.2 41 150-191 11-63 (121)
48 2wkq_A NPH1-1, RAS-related C3 49.6 57 0.002 31.4 8.8 35 525-560 89-123 (332)
49 3rty_A Period circadian protei 47.2 7.1 0.00024 40.1 1.9 25 166-190 179-203 (339)
50 3t50_A Blue-light-activated hi 46.2 86 0.0029 24.4 8.0 36 522-558 72-107 (128)
51 4hia_A LOV protein; PAS, HTH, 40.7 90 0.0031 26.3 7.8 36 523-559 83-118 (176)
52 1n9l_A PHOT-LOV1, putative blu 40.4 63 0.0022 25.5 6.3 39 521-560 67-105 (109)
53 3k2t_A LMO2511 protein; lister 39.8 23 0.00079 27.6 3.3 32 506-539 25-56 (57)
54 3lyv_A Ribosome-associated fac 37.8 39 0.0013 27.1 4.4 33 506-540 26-58 (66)
55 3d72_A Vivid PAS protein VVD; 37.3 52 0.0018 26.8 5.5 37 521-558 110-146 (149)
56 2r78_A Sensor protein; sensory 37.2 84 0.0029 25.0 6.7 25 521-545 81-105 (117)
57 3nja_A Probable ggdef family p 36.6 14 0.00049 28.5 1.7 50 142-191 7-69 (125)
58 3lyx_A Sensory BOX/ggdef domai 36.5 1.3E+02 0.0044 22.3 8.3 37 522-559 79-115 (124)
59 3ka5_A Ribosome-associated pro 36.2 32 0.0011 27.5 3.7 34 506-541 25-58 (65)
60 3mqq_A Transcriptional regulat 33.3 70 0.0024 25.1 5.5 37 521-559 74-110 (120)
61 2pr5_A Blue-light photorecepto 32.9 64 0.0022 26.1 5.3 36 521-559 73-108 (132)
62 3muj_A Transcription factor CO 32.1 56 0.0019 29.9 5.0 41 231-271 94-134 (138)
63 3luq_A Sensor protein; PAS, hi 31.3 1.6E+02 0.0055 21.9 8.4 34 525-559 77-110 (114)
64 3mr0_A Sensory box histidine k 31.0 33 0.0011 28.5 3.2 50 142-191 9-71 (142)
65 3eeh_A Putative light and redo 30.5 19 0.00066 27.3 1.6 51 141-191 10-74 (125)
66 4eho_A Bacteriophytochrome, PA 30.4 31 0.0011 38.1 3.7 34 525-559 592-625 (635)
67 3olo_A Two-component sensor hi 30.1 1.8E+02 0.0061 22.0 8.2 35 521-558 79-113 (118)
68 1byw_A Protein (human ERG pota 29.6 1.2E+02 0.0041 21.8 5.9 36 522-558 68-103 (110)
69 2v0u_A NPH1-1, LOV2; kinase, t 28.1 1.2E+02 0.004 23.4 5.9 37 521-558 76-112 (146)
70 3sw1_A Sensory box protein; li 26.0 2.5E+02 0.0085 22.8 7.9 36 522-558 100-135 (162)
71 3lyx_A Sensory BOX/ggdef domai 25.6 40 0.0014 25.2 2.6 46 138-184 3-60 (124)
72 3ewk_A Sensor protein; PAS dom 25.2 1.2E+02 0.0042 27.3 6.3 38 522-560 61-98 (227)
73 4hia_A LOV protein; PAS, HTH, 24.8 28 0.00097 29.6 1.7 49 136-184 1-63 (176)
74 1d06_A Nitrogen fixation regul 23.3 38 0.0013 27.4 2.1 42 144-186 18-71 (130)
75 2z6d_A Phototropin-2; PAS-fold 22.3 1.5E+02 0.0053 21.9 5.5 37 521-558 80-116 (130)
76 1oj5_A Steroid receptor coacti 21.2 11 0.00039 34.1 -1.7 25 166-190 31-59 (132)
77 3mjq_A Uncharacterized protein 21.1 2.7E+02 0.0094 21.0 9.0 33 523-558 71-103 (126)
78 2l0w_A Potassium voltage-gated 20.2 2.1E+02 0.007 21.7 5.9 37 521-558 95-131 (138)
No 1
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=100.00 E-value=2.7e-49 Score=415.02 Aligned_cols=284 Identities=53% Similarity=0.958 Sum_probs=201.9
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhcccccccCCCCCCccchhHHhH
Q psy14584 215 LPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYTEGHYKPAFLTDQELKH 294 (563)
Q Consensus 215 ~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~~~~~~~~~~P~~l~~~el~~ 294 (563)
.+.+|++|+.+||+||++||..|.||+.|||.+.+..+|+||++||++||+|||.|+++.....+.+++|++++++++.+
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYTEANYKPTFLSDDELKH 89 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC------CCSSCTTSCHHHHHH
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcccccccccccCcccCCHHHHHH
Confidence 35589999999999999999999999999999988899999999999999999999977766667788999999999999
Q ss_pred HHHHhhhchhhhhh----chhhchh---hhh--------h----hHHh--hhhhhc-----------------CCCCCCc
Q psy14584 295 LILQAAEGFLQNHS----EIEKRRR---DKM--------N----TYIT--ELSAMV-----------------PTLLPVK 336 (563)
Q Consensus 295 l~LqALdGFLlVvs----~Ily~Se---~ll--------q----D~vh--qlse~~-----------------~~~Lp~~ 336 (563)
++++++|||++|++ +|+|+|+ .+| + |+|| |+..+. ++..|++
T Consensus 90 ~ll~~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~~~~L~~~~~~p~~~~~~~~tg~~~~ 169 (387)
T 4f3l_B 90 LILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVK 169 (387)
T ss_dssp HHHHTCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHSCC------------------
T ss_pred HHHhcCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHHHHHhcccccCccccccCcccCCccC
Confidence 99999999999998 7899883 333 2 6677 554321 1112222
Q ss_pred cCCCCCccccCCCCCceeEEeeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccccccccccccc
Q psy14584 337 TADIPAEVSRLCPGARRSFFCRMKCKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQ 416 (563)
Q Consensus 337 ~g~~~~~~~r~~~g~~RsFfcRMKctl~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~kk~~~ 416 (563)
. +.+++..++|.+.+|+|||||||++... + .++.++ .++|+.||.
T Consensus 170 ~-e~~~~~~~~~~g~~rsF~cRmr~~~~~~----------------~------------~~~~~~----~~~~~~~~~-- 214 (387)
T 4f3l_B 170 T-DITPGPSRLCSGARRSFFCRMKCNRPSV----------------K------------VEDKDF----ASTCSKKKA-- 214 (387)
T ss_dssp ---------CCCGGGEEEEEEEEECSCC----------------------------------------------------
T ss_pred C-CCCCcccccccCCceeEEEeeecccCCc----------------c------------cccccc----ccccccccc--
Confidence 2 3455667788899999999999998631 0 011111 124444431
Q ss_pred cCCCcEEEEEEEeeeeecCCccCCCcccccCceeEeeeeccccccCccccCcccccCCCCCCCccccceeEEEEeecccc
Q psy14584 417 QSDRKYSVIQCTGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGETCTLSCLVAVGRVLADK 496 (563)
Q Consensus 417 ~~~~~Y~VihctG~lk~~~p~~~g~~~~~~~~y~v~hctgYlk~w~p~g~~l~~~e~e~~d~~~~~~scLVaigr~~p~s 496 (563)
...+|+|+||+||++.|++...++.. . .+ .++..++..|||||||++++.
T Consensus 215 -~~~~y~~~~~~G~l~~~~~~~~~~~~---------------------------~-~~-~~~~~~~~~~lvai~r~~~~~ 264 (387)
T 4f3l_B 215 -DRKSFCTIHSTGYLKSWPPTKMGLDE---------------------------D-NE-PDNEGCNLSCLVAIGRLHSHM 264 (387)
T ss_dssp --CCSEEEEEEEEEEEC------------------------------------------------CCCEEEEEEEECCCS
T ss_pred -CCCceEEEEEEEEEeccccccccccc---------------------------c-cc-cccCCCcceEEEEEEecccCC
Confidence 36788888888888888654332211 0 01 123345678999999999886
Q ss_pred ccc-cccccCcCCcceeEEeecCCcEEEE--------------------------------------------------E
Q psy14584 497 TRI-LNKQVNLRPIQFLSRHALDGKFLFV--------------------------------------------------Y 525 (563)
Q Consensus 497 ~p~-~~~ei~~~~~eFvsRHslDgKftfV--------------------------------------------------Y 525 (563)
.++ ...++.....+|++||++||+|+|| |
T Consensus 265 ~~~~~~~ei~~~~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~ey 344 (387)
T 4f3l_B 265 VPQPANGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCY 344 (387)
T ss_dssp CCSCCCSSSCBCCCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCE
T ss_pred CCCCcccccccCCceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEE
Confidence 544 4677888999999999999999999 9
Q ss_pred EEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEEEcC
Q psy14584 526 QFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTLIL 563 (563)
Q Consensus 526 Rfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~Vis 563 (563)
||++|+|+|||++|.|++|+|+|++++++|||+|++|+
T Consensus 345 R~~~kdG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT 382 (387)
T 4f3l_B 345 KFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVL 382 (387)
T ss_dssp EEECTTSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC
T ss_pred EEEccCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcc
Confidence 99999999999999999999999999999999999986
No 2
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=100.00 E-value=8.6e-41 Score=346.63 Aligned_cols=269 Identities=26% Similarity=0.409 Sum_probs=187.0
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhccc----ccccCCCCCCccchh
Q psy14584 215 LPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVH----SYTEGHYKPAFLTDQ 290 (563)
Q Consensus 215 ~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~~----~~~~~~~~P~~l~~~ 290 (563)
++.+|++|+.+||+||++||..|.+|++||| ...+||||++||++||+|||.++.... .....+++|++++.+
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p---~~~~~~dk~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLP---GNARKMDKSTVLQKSIDFLRKHKETTAQSDASEIRQDWKPTFLSNE 85 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCC---SSSCCCCHHHHHHHHHHHHHHHHHHHTSCSCGGGTSCCSCTTSCHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCC---CCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccCcccccHH
Confidence 4568999999999999999999999999999 457899999999999999998774322 123457899999999
Q ss_pred HHhHHHHHhhhchhhhhh---chhhchh---hhh--------h----hHHh--hhhhh----cCCCCCCccCCCCCcccc
Q psy14584 291 ELKHLILQAAEGFLQNHS---EIEKRRR---DKM--------N----TYIT--ELSAM----VPTLLPVKTADIPAEVSR 346 (563)
Q Consensus 291 el~~l~LqALdGFLlVvs---~Ily~Se---~ll--------q----D~vh--qlse~----~~~~Lp~~~g~~~~~~~r 346 (563)
++.+++++|++||++|++ +|+|+|+ .+| + |+|| |+..+ ....++... .....
T Consensus 86 ~~~~~~l~a~~~~i~v~~~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~~~~~~~~----~~~~~ 161 (361)
T 4f3l_A 86 EFTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDS----LTPEY 161 (361)
T ss_dssp HHHHHHHHHTTEEEEEEETTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHHCCCCCCS----SSCGG
T ss_pred HHHHHHHHhcCceEEEEcCCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhccCCCCCCC----CCccc
Confidence 999999999999999999 8888883 333 1 5666 44422 111222111 11122
Q ss_pred CCCCCceeEEeeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccccccccccccccCCCcEEEEE
Q psy14584 347 LCPGARRSFFCRMKCKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQQSDRKYSVIQ 426 (563)
Q Consensus 347 ~~~g~~RsFfcRMKctl~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~kk~~~~~~~~Y~Vih 426 (563)
+..+.+|+|||||+++.... + ....|++||
T Consensus 162 ~~~~~~~~f~cr~~~~~~~~-----------------------------~---------------------~~~~y~~i~ 191 (361)
T 4f3l_A 162 LKSKNQLEFCCHMLRGTIDP-----------------------------K---------------------EPSTYEYVR 191 (361)
T ss_dssp GCGGGEEEEEEEEECCCSCS-----------------------------S---------------------SCCCEEEEE
T ss_pred ccccCceeEEEEEeccCCCC-----------------------------C---------------------CCCceEEEE
Confidence 33457899999999876420 0 256899999
Q ss_pred EEeeeeecCCccCCCcccccCceeEeeeeccccccCccccCcccccCCCCCCCccccceeEEEEeeccccccccccccCc
Q psy14584 427 CTGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGETCTLSCLVAVGRVLADKTRILNKQVNL 506 (563)
Q Consensus 427 ctG~lk~~~p~~~g~~~~~~~~y~v~hctgYlk~w~p~g~~l~~~e~e~~d~~~~~~scLVaigr~~p~s~p~~~~ei~~ 506 (563)
|+|+++.|.... ..+|.||-...... + .....+..||||++|++++........+..
T Consensus 192 ~~G~~~~~~~~~------------~~~~~g~~~~~~~~---~--------~~~~~~~~~lvai~r~~~~~~~~e~~~i~~ 248 (361)
T 4f3l_A 192 FIGNFKSLTSVS------------TSTHNGFEGTIQRT---H--------RPSYEDRVCFVATVRLATPQFIKEMCTVEE 248 (361)
T ss_dssp EEEEEEECC-----------------------------------------------CEEEEEEEEESSCCSSEEECSCSS
T ss_pred EEEEEEeccCCC------------cccccCcccccccc---c--------CccCCCceEEEEEEecCCCCcccccccccC
Confidence 999999985321 11334443221100 0 011234689999999998753322223555
Q ss_pred CCcceeEEeecCCcEEEE-------------------------------------------------EEEEeeCCcEEEE
Q psy14584 507 RPIQFLSRHALDGKFLFV-------------------------------------------------YQFKNKGGTYVQL 537 (563)
Q Consensus 507 ~~~eFvsRHslDgKftfV-------------------------------------------------YRfl~K~GgyVwl 537 (563)
...+|++||++||+|+|| |||+.|+|+|||+
T Consensus 249 ~~~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv 328 (361)
T 4f3l_A 249 PNEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWL 328 (361)
T ss_dssp SCCEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEE
T ss_pred CcceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEE
Confidence 678999999999999999 9999999999999
Q ss_pred EeEEEEeecCCCCCccEEEEEEEEcC
Q psy14584 538 QSEWKNFRNPWTKDIEYLISKNTLIL 563 (563)
Q Consensus 538 qT~~t~f~Np~s~~~e~IVcvn~Vis 563 (563)
+|.|+.++|+|++++++|||+|++|+
T Consensus 329 ~~~~~~v~~~~~g~~~~iv~~~~dIT 354 (361)
T 4f3l_A 329 QTHYYITYHQWNSRPEFIVCTHTVVS 354 (361)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEEECC
T ss_pred EEEEEEEEcCCCCCeeEEEEEEEECC
Confidence 99999999999999999999999986
No 3
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=100.00 E-value=9.1e-36 Score=307.00 Aligned_cols=206 Identities=20% Similarity=0.342 Sum_probs=157.7
Q ss_pred CcccCCCccCCCCCCcccccchhhhhhh-----hhhcCCceeEEeccccee------------eeCccccCCceeeccCh
Q psy14584 120 STYVEDGQIPSSSVHPMEYQQADSTRKS-----KKRKGGSSFQHGCAISDL------------SAQGELLGQSWFDILHP 182 (563)
Q Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~~~~l-----~q~~dGfl~v~~~~~g~i------------~sq~~~tG~S~yd~~hP 182 (563)
-+|.+....++++.+ +||.+| |||+|||++|+++++|+| |+|.+|+|++||+++||
T Consensus 6 ~~~~~~~~~~~~~s~-------~el~~~~~e~~L~aldgF~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~d~ihp 78 (317)
T 4dj3_A 6 PEFPGRLEDVTVYSL-------EDLTALASEHTSKNTDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFVDLLAP 78 (317)
T ss_dssp ----CCCCCCCBCCT-------TTTTSTTHHHHTSCTTEEEEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGGGGBCG
T ss_pred cCCCCCccCccccCH-------HHHHhhhhHHHHhccCCEEEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchhhhcCh
Confidence 367888899999999 888777 999999999999988888 89999999999999999
Q ss_pred hhHhhhhhhcccCCCCcccccccccccccccCCcccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHH
Q psy14584 183 KDVAKVKEQLFSSDLSPRERLIDVKSKQVIVGLPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRM 262 (563)
Q Consensus 183 ~D~~kvkEQlSSr~iaPRer~idaKSkq~~~~~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ 262 (563)
+|+..+++|+.. . .+|...
T Consensus 79 ~D~~~f~~ql~~-~----------------------------------------------~lP~~~-------------- 97 (317)
T 4dj3_A 79 QDVRAFYAHTAP-T----------------------------------------------QLPFWN-------------- 97 (317)
T ss_dssp GGHHHHHHHTCT-T----------------------------------------------TCCCCC--------------
T ss_pred hhHHHHHHhhcc-c----------------------------------------------CCCCcC--------------
Confidence 999999998611 0 022100
Q ss_pred HHHHHHHHhhcccccccCCCCCCccchhHHhHHHHHhhhchhhhhhchhhchhhhhhhHHhhhhhhcCCCCCCccCCCCC
Q psy14584 263 AVQHLKTIRGAVHSYTEGHYKPAFLTDQELKHLILQAAEGFLQNHSEIEKRRRDKMNTYITELSAMVPTLLPVKTADIPA 342 (563)
Q Consensus 263 ai~yIk~L~~~~~~~~~~~~~P~~l~~~el~~l~LqALdGFLlVvs~Ily~Se~llqD~vhqlse~~~~~Lp~~~g~~~~ 342 (563)
+..+
T Consensus 98 ----------------------------------------------------------------------------~~~~ 101 (317)
T 4dj3_A 98 ----------------------------------------------------------------------------NWTQ 101 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------CCcc
Confidence 0000
Q ss_pred ccccCCCCCceeEEeeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccccccccccccccCCCcE
Q psy14584 343 EVSRLCPGARRSFFCRMKCKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQQSDRKY 422 (563)
Q Consensus 343 ~~~r~~~g~~RsFfcRMKctl~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~kk~~~~~~~~Y 422 (563)
...+.+.+.+|+|||||||+... .+.+|
T Consensus 102 ~~~~~~~~~~rsF~CRmr~g~~~----------------------------------------------------~~~~y 129 (317)
T 4dj3_A 102 RASQYECAPAKPFFCRICGGGDR----------------------------------------------------EKRHY 129 (317)
T ss_dssp ------CCCCCCEEEEECCCCCS----------------------------------------------------SSCCC
T ss_pred cccccCCCCCceEEEEEeCCCCC----------------------------------------------------CCCce
Confidence 00011234689999999997531 14579
Q ss_pred EEEEEEeeeeecCCccCCCcccccCceeEeeeeccccccCccccCcccccCCCCCCCccccceeEEEEeecccccccccc
Q psy14584 423 SVIQCTGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGETCTLSCLVAVGRVLADKTRILNK 502 (563)
Q Consensus 423 ~VihctG~lk~~~p~~~g~~~~~~~~y~v~hctgYlk~w~p~g~~l~~~e~e~~d~~~~~~scLVaigr~~p~s~p~~~~ 502 (563)
++|||+||++.+.... ..+ ....|||+|+|++++.. .+
T Consensus 130 ~~~~~~g~l~~~~~~~---------------------------------~~~------~~~~clv~v~~~~~~~~---~~ 167 (317)
T 4dj3_A 130 SPFRILPYLVHVHSSA---------------------------------QPE------PEPCCLTLVEKIHSGYE---AP 167 (317)
T ss_dssp EEEEEEEEEEECCCCS---------------------------------SSC------SCEEEEEEEEECCCTTS---SS
T ss_pred EEEEEEeEEEeccCCC---------------------------------CCC------CCceEEEEEEecCCCcC---CC
Confidence 9999999999875210 001 12469999999998753 22
Q ss_pred ccCcCCcceeEEeecCCcEEEE----------------------------------------------------EEEEee
Q psy14584 503 QVNLRPIQFLSRHALDGKFLFV----------------------------------------------------YQFKNK 530 (563)
Q Consensus 503 ei~~~~~eFvsRHslDgKftfV----------------------------------------------------YRfl~K 530 (563)
++++...+|++||++||+|+|| |||++|
T Consensus 168 ~~~~~~~~Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~k 247 (317)
T 4dj3_A 168 RIPVDKRIFTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQ 247 (317)
T ss_dssp CCCGGGCEEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECT
T ss_pred CcccCCCceEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEcc
Confidence 3455667999999999999999 999999
Q ss_pred CCcEEEEEeEEEEeecCCCCCccEEEEEEEEcC
Q psy14584 531 GGTYVQLQSEWKNFRNPWTKDIEYLISKNTLIL 563 (563)
Q Consensus 531 ~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~Vis 563 (563)
||+|||++|+|++|+|||+++++||||+|+|++
T Consensus 248 dG~~vwvet~~~~~~np~s~~~e~II~~h~v~~ 280 (317)
T 4dj3_A 248 NGEYVILDSSWSSFVNPWSRKVSFIIGRHKVRT 280 (317)
T ss_dssp TSCEEEEEEEEEEEECSSSCCEEEEEEEEEECC
T ss_pred CCCEEEEEEEEEEEECCCCCcccEEEEEEEecc
Confidence 999999999999999999999999999999984
No 4
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=100.00 E-value=2.9e-35 Score=303.61 Aligned_cols=203 Identities=16% Similarity=0.310 Sum_probs=151.4
Q ss_pred CCccCCCCCCcccccchhhhhhh-----hhhcCCceeEEeccccee------------eeCccccCCceeeccChhhHhh
Q psy14584 125 DGQIPSSSVHPMEYQQADSTRKS-----KKRKGGSSFQHGCAISDL------------SAQGELLGQSWFDILHPKDVAK 187 (563)
Q Consensus 125 ~~~~p~~~~~~~~~~~~~~~~~l-----~q~~dGfl~v~~~~~g~i------------~sq~~~tG~S~yd~~hP~D~~k 187 (563)
.+..++|+.+ +|++|| |||+|||++|+++++|.| |+|.+|+|+++|+++||+|+.+
T Consensus 11 ~~~~~~~~s~-------eel~~l~~e~lLqaldGF~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~~ 83 (320)
T 4dj2_A 11 CAMDMSTYTL-------EELEHITSEYTLRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGV 83 (320)
T ss_dssp ---CCSEECH-------HHHHHHHHHHTTSCSSEEEEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHHHHHH
T ss_pred cccCccccCH-------HHHHHHHHHHHHhccCCEEEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHHHHHH
Confidence 3567899999 999988 999999999999988988 9999999999999999999999
Q ss_pred hhhhcccCCCCcccccccccccccccCCcccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHH
Q psy14584 188 VKEQLFSSDLSPRERLIDVKSKQVIVGLPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHL 267 (563)
Q Consensus 188 vkEQlSSr~iaPRer~idaKSkq~~~~~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yI 267 (563)
+++||.... +|......
T Consensus 84 f~~qL~~~~-----------------------------------------------lp~~~~~~---------------- 100 (320)
T 4dj2_A 84 FYGSTTPSR-----------------------------------------------LPTWGTGT---------------- 100 (320)
T ss_dssp HHHHCCTTT-----------------------------------------------CCBTTC------------------
T ss_pred HHHhhcccC-----------------------------------------------CCCcccCc----------------
Confidence 999974311 11100000
Q ss_pred HHHhhcccccccCCCCCCccchhHHhHHHHHhhhchhhhhhchhhchhhhhhhHHhhhhhhcCCCCCCccCCCCCccccC
Q psy14584 268 KTIRGAVHSYTEGHYKPAFLTDQELKHLILQAAEGFLQNHSEIEKRRRDKMNTYITELSAMVPTLLPVKTADIPAEVSRL 347 (563)
Q Consensus 268 k~L~~~~~~~~~~~~~P~~l~~~el~~l~LqALdGFLlVvs~Ily~Se~llqD~vhqlse~~~~~Lp~~~g~~~~~~~r~ 347 (563)
+.+. .+.
T Consensus 101 ------------------------------------------------------------------~~~~-------~~~ 107 (320)
T 4dj2_A 101 ------------------------------------------------------------------SAGS-------GLK 107 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------------------------------cccc-------ccc
Confidence 0000 000
Q ss_pred CCCCceeEEeeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccccccccccccccccCCCcEEEEEE
Q psy14584 348 CPGARRSFFCRMKCKHTPASSSSSSSSNSAPSTQPGPNTPSPGTGSCVKEEPDTTTGAAASCHRKKKQQQSDRKYSVIQC 427 (563)
Q Consensus 348 ~~g~~RsFfcRMKctl~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~kk~~~~~~~~Y~Vihc 427 (563)
..+.+|+|||||||++.. + ...+|+++||
T Consensus 108 ~~~~~rsF~CRmr~~l~k-------------------------------~--------------------~~~~Y~~~~~ 136 (320)
T 4dj2_A 108 DFTQEKSVFCRIRGGPDR-------------------------------D--------------------PGPRYQPFRL 136 (320)
T ss_dssp ----CCCEEEEECCC----------------------------------------------------------CCEEEEE
T ss_pred cCCCceeEEEEEEEeccC-------------------------------C--------------------CcccEEEEEE
Confidence 124689999999999741 0 1467999999
Q ss_pred EeeeeecCCccCCCcccccCceeEeeeeccccccCccccCcccccCCCCCCCccccceeEEEEeeccccccccccccCcC
Q psy14584 428 TGYLKSWAPAKMGLEESEDRKYSVIQCTGYLKSWAPAKMGLEESEGEGEGGETCTLSCLVAVGRVLADKTRILNKQVNLR 507 (563)
Q Consensus 428 tG~lk~~~p~~~g~~~~~~~~y~v~hctgYlk~w~p~g~~l~~~e~e~~d~~~~~~scLVaigr~~p~s~p~~~~ei~~~ 507 (563)
+|++|.+... ++..+...|+|+++|+++.. .+.+++.+
T Consensus 137 ~g~lk~~~~~---------------------------------------~g~~~~~~~li~a~~~~s~~---~~~~i~~~ 174 (320)
T 4dj2_A 137 TPYVTKIRVS---------------------------------------DGAPAQPCCLLIAERIHSGY---EAPRIPPD 174 (320)
T ss_dssp EEEEEEECC------------------------------------------CCCEEEEEEEEEECCCSS---SSSCCCGG
T ss_pred EEEecccccC---------------------------------------CCCcccceeeeeeeeccCcc---ccccccCC
Confidence 9999886411 11122456778777776652 33457778
Q ss_pred CcceeEEeecCCcEEEE---------------------------------------------------EEEEeeCCcEEE
Q psy14584 508 PIQFLSRHALDGKFLFV---------------------------------------------------YQFKNKGGTYVQ 536 (563)
Q Consensus 508 ~~eFvsRHslDgKftfV---------------------------------------------------YRfl~K~GgyVw 536 (563)
..+|++||++||+|+|| |||++|||+|||
T Consensus 175 ~~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 254 (320)
T 4dj2_A 175 KRIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVT 254 (320)
T ss_dssp GCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEE
T ss_pred CceEEEEecCCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEE
Confidence 89999999999999999 999999999999
Q ss_pred EEeEEEEeecCCCCCccEEEEEEEEcC
Q psy14584 537 LQSEWKNFRNPWTKDIEYLISKNTLIL 563 (563)
Q Consensus 537 lqT~~t~f~Np~s~~~e~IVcvn~Vis 563 (563)
++|+|++|+|||+++++||||+|+||+
T Consensus 255 vet~~~~~~np~s~~~e~II~~h~v~~ 281 (320)
T 4dj2_A 255 MDTSWAGFVHPWSRKVAFVLGRHKVRT 281 (320)
T ss_dssp EECEEEEEECTTTCSEEEEEEEEEESS
T ss_pred EEEEEEEEECCCCCCccEEEEEEEEcc
Confidence 999999999999999999999999985
No 5
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=100.00 E-value=1.7e-32 Score=281.62 Aligned_cols=77 Identities=25% Similarity=0.617 Sum_probs=62.6
Q ss_pred ceeEEEEeeccccccccccccCcCCcceeEEeecCCcEEEE---------------------------------------
Q psy14584 484 SCLVAVGRVLADKTRILNKQVNLRPIQFLSRHALDGKFLFV--------------------------------------- 524 (563)
Q Consensus 484 scLVaigr~~p~s~p~~~~ei~~~~~eFvsRHslDgKftfV--------------------------------------- 524 (563)
.|+++++++.+... .+.++....+|++||++||+|+||
T Consensus 143 ~lv~~a~~~~s~~~---~p~~~~~~~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~ 219 (309)
T 3gdi_A 143 CCLLLAERVHSGYE---APRIPPEKRIFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKI 219 (309)
T ss_dssp EEEEEEEECCCTTS---SSCCCGGGCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcc---CCCcCCCCceEEEEecCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHH
Confidence 34455555544321 222334456999999999999999
Q ss_pred ------------EEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEEEcC
Q psy14584 525 ------------YQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTLIL 563 (563)
Q Consensus 525 ------------YRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~Vis 563 (563)
|||++|||+|||++|+|++|+|||+++++||||+|+||+
T Consensus 220 l~~~g~~~~~~~yR~~~kdG~~vwvet~~~~~~np~s~~~e~ii~~h~v~~ 270 (309)
T 3gdi_A 220 LQAGGQPFDYSPIRFRTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRV 270 (309)
T ss_dssp HHTTTCCEEEEEEEEECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEE
T ss_pred HhcCCceeeceEEEEEccCCCEEEEEEEEEEEECCCCCcccEEEEEEEEcc
Confidence 999999999999999999999999999999999999984
No 6
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.89 E-value=1.1e-22 Score=211.34 Aligned_cols=81 Identities=25% Similarity=0.573 Sum_probs=69.7
Q ss_pred cceeEEEEeeccccccccccccCcCCcceeEEeecCCcEEEE--------------------------------------
Q psy14584 483 LSCLVAVGRVLADKTRILNKQVNLRPIQFLSRHALDGKFLFV-------------------------------------- 524 (563)
Q Consensus 483 ~scLVaigr~~p~s~p~~~~ei~~~~~eFvsRHslDgKftfV-------------------------------------- 524 (563)
..|||++|.+++...-..+..+..+..+|++||++||+|+||
T Consensus 128 ~~~lv~~a~~i~s~~~~p~e~~~~~~~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~ 207 (339)
T 3rty_A 128 NMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYET 207 (339)
T ss_dssp CEEEEEEEEECCCSCSSTTBBCCSSCCEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHH
T ss_pred eEEEEEEcccCCccccccchhhccCCceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHH
Confidence 468999999997643211122345778999999999999999
Q ss_pred ----------------EEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEEEcC
Q psy14584 525 ----------------YQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTLIL 563 (563)
Q Consensus 525 ----------------YRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~Vis 563 (563)
|||++|||+|||++|.|++|+|||+++++||||+|+||+
T Consensus 208 ~l~~G~~~~~~~~s~~yR~~~kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~ 262 (339)
T 3rty_A 208 VMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQ 262 (339)
T ss_dssp HHHHTTSTTCCCBCCCEEEECTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEE
T ss_pred HHHcCCcccccccceEEEEEccCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECC
Confidence 999999999999999999999999999999999999984
No 7
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=99.75 E-value=1.3e-18 Score=158.73 Aligned_cols=57 Identities=14% Similarity=0.239 Sum_probs=50.6
Q ss_pred CCcceeEEeecCCcEEEE----------------------------------------------------EEEEeeCCcE
Q psy14584 507 RPIQFLSRHALDGKFLFV----------------------------------------------------YQFKNKGGTY 534 (563)
Q Consensus 507 ~~~eFvsRHslDgKftfV----------------------------------------------------YRfl~K~Ggy 534 (563)
...+|+|||++||||+|| |||++|+|+|
T Consensus 5 ~~e~F~sRh~~dGKf~~vDq~~~r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~ 84 (132)
T 1oj5_A 5 GVESFMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTM 84 (132)
T ss_dssp -CCEEEEEECTTCCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCE
T ss_pred CceeeEEeecCCCcEEEEecccccccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcE
Confidence 468999999999999999 9999999999
Q ss_pred EEEEeEEEEeecCCCCCccEEEEEEEEcC
Q psy14584 535 VQLQSEWKNFRNPWTKDIEYLISKNTLIL 563 (563)
Q Consensus 535 VwlqT~~t~f~Np~s~~~e~IVcvn~Vis 563 (563)
|||||+|++|+||||++++||||+|+||.
T Consensus 85 V~~qT~sk~f~np~t~e~e~Ivs~n~v~r 113 (132)
T 1oj5_A 85 LSAHTRCKLCYPQSPDMQPFIMGIHIIDR 113 (132)
T ss_dssp EEEEEEEEEECC----CCCEEEEEEEEEC
T ss_pred EEEEEEEEEecCCCCCCCCEEEEEEEEEc
Confidence 99999999999999999999999999984
No 8
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.42 E-value=3.7e-14 Score=117.47 Aligned_cols=59 Identities=71% Similarity=1.103 Sum_probs=54.9
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhc
Q psy14584 215 LPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGA 273 (563)
Q Consensus 215 ~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~ 273 (563)
.+.+|++|+.+||+||++||..|.+|+.|||.|.....|+||++||++||+||+.|+..
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 45689999999999999999999999999999987889999999999999999998754
No 9
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.35 E-value=3.3e-13 Score=111.19 Aligned_cols=56 Identities=36% Similarity=0.564 Sum_probs=51.0
Q ss_pred cccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhcc
Q psy14584 216 PVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAV 274 (563)
Q Consensus 216 ~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~ 274 (563)
+.+|++|+.+||+||++||..|.+|+.|||. ...|+||++||++||+||+.|+...
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~---~~~K~dK~sIL~~aI~yik~Lq~~~ 61 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPG---NARKMDKSTVLQKSIDFLRKHKEIT 61 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS---CCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC---CCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 4589999999999999999999999999994 4579999999999999999998643
No 10
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.33 E-value=6.9e-13 Score=106.83 Aligned_cols=57 Identities=21% Similarity=0.376 Sum_probs=51.9
Q ss_pred cccccchhhhhhhhhhhHHHHHHHhcCCCcccc---cCCccHHHHHHHHHHHHHHHhhcc
Q psy14584 218 SRQNHSEIEKRRRDKMNTYITELSAMVPMCHAM---SRKLDKLTVLRMAVQHLKTIRGAV 274 (563)
Q Consensus 218 rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~---~~KldKasILr~ai~yIk~L~~~~ 274 (563)
+|.+|+.+||+||++||..|.+|+.|||.+... ..+++|++||.+||+||+.|+.+.
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999987543 589999999999999999998653
No 11
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.27 E-value=9.9e-13 Score=105.94 Aligned_cols=60 Identities=30% Similarity=0.452 Sum_probs=53.5
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHhcCCCcccc--cCCccHHHHHHHHHHHHHHHhhcc
Q psy14584 215 LPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAM--SRKLDKLTVLRMAVQHLKTIRGAV 274 (563)
Q Consensus 215 ~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~--~~KldKasILr~ai~yIk~L~~~~ 274 (563)
+..+|.+|+.+||+||++||..|.+|+.|||.+... ..|+||++||++||+||+.|+.+.
T Consensus 2 d~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 2 DEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred cHHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 356899999999999999999999999999998654 358899999999999999998654
No 12
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.20 E-value=7.6e-12 Score=112.33 Aligned_cols=61 Identities=26% Similarity=0.439 Sum_probs=47.1
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhccc
Q psy14584 215 LPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVH 275 (563)
Q Consensus 215 ~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~~ 275 (563)
+..+|.+|+.+||+||++||..|.+|+.|||.+.....|++|++||..||+||+.|+.+..
T Consensus 24 ~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~ 84 (118)
T 4ati_A 24 ERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 84 (118)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5568999999999999999999999999999997777899999999999999999885443
No 13
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.07 E-value=5.6e-11 Score=99.09 Aligned_cols=60 Identities=28% Similarity=0.384 Sum_probs=46.9
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhcc
Q psy14584 215 LPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAV 274 (563)
Q Consensus 215 ~~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~ 274 (563)
+.++|.+||..||+||++||..|.+|+.+||.+......++|++||+.||+||+.|+.+.
T Consensus 2 ~~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l 61 (76)
T 3u5v_A 2 GADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQV 61 (76)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999975544555689999999999999988644
No 14
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.06 E-value=5.3e-11 Score=100.34 Aligned_cols=57 Identities=33% Similarity=0.435 Sum_probs=51.5
Q ss_pred cccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhccc
Q psy14584 216 PVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVH 275 (563)
Q Consensus 216 ~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~~ 275 (563)
..+|.+|+.+||+||++||..|.+|+.+||.+ ..|+||++||+.||+||+.|+.+..
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~---~~k~~Ka~IL~~Ai~YI~~Lq~~~~ 60 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGT---EAKLNKSAVLRKAIDYIRFLQHSNQ 60 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS---SCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC---CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999974 5799999999999999999886543
No 15
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.01 E-value=1.2e-10 Score=98.05 Aligned_cols=56 Identities=25% Similarity=0.459 Sum_probs=50.7
Q ss_pred cccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhccc
Q psy14584 218 SRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVH 275 (563)
Q Consensus 218 rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~~ 275 (563)
+|.+||.+||+||++||..|.+|+.+||.+. ..|+||++||+.||+||+.|+....
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~--~~k~sK~~iL~~Ai~YI~~L~~~~~ 57 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ--GEKASRAQILDKATEYIQYMRRKNH 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT--TSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999764 4689999999999999999885443
No 16
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.97 E-value=2.5e-10 Score=95.57 Aligned_cols=57 Identities=23% Similarity=0.401 Sum_probs=51.5
Q ss_pred cccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhcc
Q psy14584 216 PVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAV 274 (563)
Q Consensus 216 ~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~ 274 (563)
..+|.+|+.+||+||.+||..|.+|+.+||.+. ..|++|++||+.||+||+.|+...
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~--~~k~sK~~iL~~Ai~YI~~L~~~~ 66 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ--GEKASRAQILDKATEYIQYMRRKN 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT--TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC--CCCccHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999764 368999999999999999988543
No 17
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.90 E-value=6.6e-10 Score=94.93 Aligned_cols=58 Identities=21% Similarity=0.388 Sum_probs=51.6
Q ss_pred cccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhcc
Q psy14584 216 PVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAV 274 (563)
Q Consensus 216 ~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~ 274 (563)
..+|.+||.+||+||++||.+|.+|+.+||... ...|++|++||+.|++||+.|+...
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~-~~~K~sK~~iL~~A~~YI~~L~~~~ 61 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELE-NNEKAPKVVILKKATAYILSVQAEE 61 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGT-TCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999753 3469999999999999999988644
No 18
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=98.74 E-value=5.4e-09 Score=87.84 Aligned_cols=55 Identities=29% Similarity=0.482 Sum_probs=49.4
Q ss_pred ccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhcc
Q psy14584 219 RQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAV 274 (563)
Q Consensus 219 re~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~ 274 (563)
|..||.+||+||+.+|.+|..|+++||... ...|++|++||+.|++||+.|+...
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~-~~~k~sk~~iL~kA~~yI~~L~~~~ 56 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGP-DSSRHTTLSLLTKAKLHIKKLEDSD 56 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCS-SSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999753 3568999999999999999988644
No 19
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.71 E-value=8.9e-09 Score=84.10 Aligned_cols=56 Identities=21% Similarity=0.316 Sum_probs=50.7
Q ss_pred cccccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhc
Q psy14584 216 PVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGA 273 (563)
Q Consensus 216 ~~rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~ 273 (563)
..+|..||..||+|+..+|..|.+|+.+||... ..|++|..||++|++||+.|+..
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~--~~KlSKi~tLr~Ai~YI~~L~~~ 65 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNP--NQRLPKVEILRNAIRYIEGLQAL 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT--TSCCCHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999754 57999999999999999998753
No 20
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.64 E-value=2.1e-08 Score=79.96 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=49.6
Q ss_pred cccccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhc
Q psy14584 218 SRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGA 273 (563)
Q Consensus 218 rre~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~ 273 (563)
+|..+|..||+|+..+|..|.+|+.+||... ...|++|..||++|++||+.|+..
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~-~~~klSKi~tLr~Ai~YI~~L~~~ 56 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYS-KTQKLSKIETLRLAKNYIWALSEI 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCC-SSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCC-CcCcCCHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999753 467999999999999999998753
No 21
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.49 E-value=3.9e-08 Score=102.96 Aligned_cols=84 Identities=46% Similarity=0.680 Sum_probs=58.3
Q ss_pred cCcccCCCccCCCCCCcccccchhhhhhh-hhhcCCceeEEeccccee------------eeCccccCCceeeccChhhH
Q psy14584 119 TSTYVEDGQIPSSSVHPMEYQQADSTRKS-KKRKGGSSFQHGCAISDL------------SAQGELLGQSWFDILHPKDV 185 (563)
Q Consensus 119 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~l-~q~~dGfl~v~~~~~g~i------------~sq~~~tG~S~yd~~hP~D~ 185 (563)
.+.+.+..++|+++.. +|+.++ ++++|||++|++++.|.| |+|.+++|+++++++||+|+
T Consensus 69 ~~~~~~~~~~~~~~~~-------~~~~~~ll~~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~ 141 (387)
T 4f3l_B 69 TNPYTEANYKPTFLSD-------DELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDI 141 (387)
T ss_dssp ------CCSSCTTSCH-------HHHHHHHHHTCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGH
T ss_pred cccccccccCcccCCH-------HHHHHHHHhcCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCH
Confidence 4456667889998877 677666 999999999999987888 88999999999999999999
Q ss_pred hhhhhhcccCCCCccccccccccc
Q psy14584 186 AKVKEQLFSSDLSPRERLIDVKSK 209 (563)
Q Consensus 186 ~kvkEQlSSr~iaPRer~idaKSk 209 (563)
..++++|+.....|+++.++++++
T Consensus 142 ~~~~~~L~~~~~~p~~~~~~~~tg 165 (387)
T 4f3l_B 142 AKVKEQLSSSDTAPRERLIDAKTG 165 (387)
T ss_dssp HHHHHHHSCC--------------
T ss_pred HHHHHHhcccccCccccccCcccC
Confidence 999999987777888777777765
No 22
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.38 E-value=2.6e-07 Score=75.28 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=46.1
Q ss_pred cccchhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhh
Q psy14584 220 QNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRG 272 (563)
Q Consensus 220 e~h~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~ 272 (563)
..-++-||+|+..+|..|.+|+.+||... ...||+|..||++||+||..|+.
T Consensus 16 ~~a~erER~Rm~~lN~aF~~LR~~VP~~p-~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 16 GPAAEEPLSLLDDMNHCYSRLRELVPGVP-RGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCBCCCSCSSSHHHHHHHHHHHHCCCCC-TTCCCCHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCccHHHHHHHHHHHHHHHHc
Confidence 35568899999999999999999999864 45799999999999999999874
No 23
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.37 E-value=3e-07 Score=77.69 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=42.2
Q ss_pred hhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhccc
Q psy14584 230 RDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVH 275 (563)
Q Consensus 230 RdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~~~ 275 (563)
|..||.+|.||..|||.+.....|++|++||+.||+||+.|+....
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~ 49 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 49 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999987778899999999999999999986544
No 24
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=98.29 E-value=2.8e-06 Score=70.13 Aligned_cols=39 Identities=51% Similarity=1.018 Sum_probs=37.5
Q ss_pred EEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEEEcC
Q psy14584 525 YQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTLIL 563 (563)
Q Consensus 525 YRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~Vis 563 (563)
||++.|+|.++|+++.+..++|+++.++++|||++.+|+
T Consensus 79 ~r~~~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~ 117 (121)
T 2kdk_A 79 YKFRAKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVL 117 (121)
T ss_dssp EEEECSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCS
T ss_pred EEEEEcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEecc
Confidence 999999999999999999999999999999999999885
No 25
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=98.22 E-value=3.7e-06 Score=69.37 Aligned_cols=58 Identities=29% Similarity=0.477 Sum_probs=53.6
Q ss_pred cCCcceeEEeecCCcEEEE-------------------------------------------------EEEEeeCCcEEE
Q psy14584 506 LRPIQFLSRHALDGKFLFV-------------------------------------------------YQFKNKGGTYVQ 536 (563)
Q Consensus 506 ~~~~eFvsRHslDgKftfV-------------------------------------------------YRfl~K~GgyVw 536 (563)
+.+..|+.++++||+|+|| ||++.|+|.++|
T Consensus 6 l~~~~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w 85 (117)
T 3f1p_A 6 LDSKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVW 85 (117)
T ss_dssp TGGGEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEEE
T ss_pred cCCccEEEEECCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEEE
Confidence 4567899999999999999 999999999999
Q ss_pred EEeEEEEeecCCCCCccEEEEEEEEcC
Q psy14584 537 LQSEWKNFRNPWTKDIEYLISKNTLIL 563 (563)
Q Consensus 537 lqT~~t~f~Np~s~~~e~IVcvn~Vis 563 (563)
++..+..++|+++.++.+|||++.-|+
T Consensus 86 ~~~~~~~~~d~~~g~~~~iv~~~~DIT 112 (117)
T 3f1p_A 86 LETQGTVIYNPRNLQPQCIMCVNYVLS 112 (117)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEECS
T ss_pred EEEeeEEEECCCCCCceEEEEEeeecc
Confidence 999999999999999999999998775
No 26
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=98.17 E-value=7.5e-06 Score=68.13 Aligned_cols=39 Identities=28% Similarity=0.669 Sum_probs=37.0
Q ss_pred EEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEEEcC
Q psy14584 525 YQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTLIL 563 (563)
Q Consensus 525 YRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~Vis 563 (563)
||++.|+|.|+|+++.+..++|+++.++.+|||++.-|+
T Consensus 78 ~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT 116 (121)
T 3f1p_B 78 FRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVK 116 (121)
T ss_dssp EEEECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECC
T ss_pred EEEEecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcc
Confidence 999999999999999999999999999999999998764
No 27
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.75 E-value=1.2e-05 Score=83.09 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=58.2
Q ss_pred CcccCCCccCCCCCCcccccchhhhhhh-hhhcCCceeEEeccccee------------eeCccccCCceeeccChhhHh
Q psy14584 120 STYVEDGQIPSSSVHPMEYQQADSTRKS-KKRKGGSSFQHGCAISDL------------SAQGELLGQSWFDILHPKDVA 186 (563)
Q Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~~~~l-~q~~dGfl~v~~~~~g~i------------~sq~~~tG~S~yd~~hP~D~~ 186 (563)
++.+.+.++|+++.. +++.++ +++++||++|++++ |.| |+|.+++|+++++++||+|+.
T Consensus 70 ~~~~~~~~~~~~~~~-------~~~~~~~l~a~~~~i~v~~~~-G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~ 141 (361)
T 4f3l_A 70 ASEIRQDWKPTFLSN-------EEFTQLMLEALDGFFLAIMTD-GSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHS 141 (361)
T ss_dssp CGGGTSCCSCTTSCH-------HHHHHHHHHHTTEEEEEEETT-SBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHH
T ss_pred ccccccccCcccccH-------HHHHHHHHHhcCceEEEEcCC-ccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHH
Confidence 445667889999887 777665 89999999999987 777 889999999999999999999
Q ss_pred hhhhhcccC
Q psy14584 187 KVKEQLFSS 195 (563)
Q Consensus 187 kvkEQlSSr 195 (563)
.+.+++...
T Consensus 142 ~~~~~l~~~ 150 (361)
T 4f3l_A 142 EVYKILSTH 150 (361)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHhccC
Confidence 999988643
No 28
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.58 E-value=7.4e-05 Score=64.86 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=42.6
Q ss_pred chhhhhhhhhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHhhc
Q psy14584 223 SEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGA 273 (563)
Q Consensus 223 ~~aERrRRdkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~~~ 273 (563)
.+-||+|-..+|..|..|+.+||... ...||+|..+||+|+.||+.|+..
T Consensus 30 ~~~~r~Rm~~lN~AF~~LR~~vP~~p-~~kKLSKIETLRlAi~YI~~Lq~~ 79 (97)
T 4aya_A 30 VDDPMSLLYNMNDCYSKLKELVPSIP-QNKKVSKMEILQHVIDYILDLQIA 79 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCTTSC-SSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHCCCCC-CCCcccHHHHHHHHHHHHHHHHHH
Confidence 45567788899999999999999754 458999999999999999998753
No 29
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=96.89 E-value=8.6e-05 Score=76.49 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=38.1
Q ss_pred CCCCccchhHHhHH----HHHhhhchhhhhh----chhhchhh---h--------hh----hHHh--hhhhhcC
Q psy14584 282 YKPAFLTDQELKHL----ILQAAEGFLQNHS----EIEKRRRD---K--------MN----TYIT--ELSAMVP 330 (563)
Q Consensus 282 ~~P~~l~~~el~~l----~LqALdGFLlVvs----~Ily~Se~---l--------lq----D~vh--qlse~~~ 330 (563)
..+++++++||.++ +|||||||++||+ +|+|+|+. + ++ |+|| |+.++..
T Consensus 13 ~~~~~~s~eel~~l~~e~lLqaldGF~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~~f~~ 86 (320)
T 4dj2_A 13 MDMSTYTLEELEHITSEYTLRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYG 86 (320)
T ss_dssp -CCSEECHHHHHHHHHHHTTSCSSEEEEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHHHHHHHHH
T ss_pred cCccccCHHHHHHHHHHHHHhccCCEEEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHHHHHHHHH
Confidence 35689999999988 6999999999998 89999943 3 32 7777 7776544
No 30
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=96.48 E-value=0.00091 Score=57.49 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=35.7
Q ss_pred hhhhhcCCceeEEeccccee------------eeCccccCCceeeccChhhHhhhhhhc
Q psy14584 146 KSKKRKGGSSFQHGCAISDL------------SAQGELLGQSWFDILHPKDVAKVKEQL 192 (563)
Q Consensus 146 ~l~q~~dGfl~v~~~~~g~i------------~sq~~~tG~S~yd~~hP~D~~kvkEQl 192 (563)
+|++++++|+++++.+ |.| |+|.+++|+++++++||+|.+.+.+++
T Consensus 3 ~lle~~~d~i~v~d~~-G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~ 60 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASN-GRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYF 60 (111)
T ss_dssp ------CCEEEEECTT-SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHH
T ss_pred chhhcCCCEEEEEcCC-CeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHH
Confidence 6789999999999976 776 888999999999999999998887764
No 31
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=96.44 E-value=0.0072 Score=51.81 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=27.0
Q ss_pred EEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEEE
Q psy14584 525 YQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTL 561 (563)
Q Consensus 525 YRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~V 561 (563)
||++.|+|.|+|++.....+.+....+...|||.=.+
T Consensus 71 ~r~~~kdG~~~wve~~~~~v~~~~~~~~r~~~~~~~~ 107 (111)
T 2vlg_A 71 FRFIKKDHTIVWVEAAVEIVTTRAERTEREIILKMKV 107 (111)
T ss_dssp EEEECTTSCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred EEEEcCCCCEEEEEEEEEEEecccCCceEEEEEEEEE
Confidence 9999999999999999999999988888888886544
No 32
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=96.32 E-value=0.00041 Score=71.34 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=29.1
Q ss_pred CCCccchhHHhHH----HHHhhhchhhhhh----chhhchh
Q psy14584 283 KPAFLTDQELKHL----ILQAAEGFLQNHS----EIEKRRR 315 (563)
Q Consensus 283 ~P~~l~~~el~~l----~LqALdGFLlVvs----~Ily~Se 315 (563)
.+++++++||.++ +|+|||||++||+ +|+|+|+
T Consensus 14 ~~~~~s~~el~~~~~e~~L~aldgF~~vvs~~~G~i~yvS~ 54 (317)
T 4dj3_A 14 DVTVYSLEDLTALASEHTSKNTDTFAAVFSFLSGRLVHISE 54 (317)
T ss_dssp CCCBCCTTTTTSTTHHHHTSCTTEEEEEEETTTCBEEEECT
T ss_pred CccccCHHHHHhhhhHHHHhccCCEEEEEEcCCcEEEEECC
Confidence 3578999999877 9999999999998 8999994
No 33
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=94.11 E-value=0.0056 Score=62.60 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=37.3
Q ss_pred hHHHHHhhhchhhhhh----chhhchhh-----------hhh----hHHh--hhhhhcC----CCCCCcc-CCCCCcccc
Q psy14584 293 KHLILQAAEGFLQNHS----EIEKRRRD-----------KMN----TYIT--ELSAMVP----TLLPVKT-ADIPAEVSR 346 (563)
Q Consensus 293 ~~l~LqALdGFLlVvs----~Ily~Se~-----------llq----D~vh--qlse~~~----~~Lp~~~-g~~~~~~~r 346 (563)
++++|+|||||++||+ +|+|+|+. |++ |++| |++++.. ..+|.+. +...+...+
T Consensus 17 ~~lll~a~dgF~~vvs~~~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~iHp~D~~~~~~~L~~~~lp~~~~~~~~~~~~~ 96 (309)
T 3gdi_A 17 SEYIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFTQ 96 (309)
T ss_dssp CC----CTTEEEEEECTTTCBEEEECTTTTTTC-------CCSBGGGGBCTTTHHHHHHHTCTTSSCBCC----------
T ss_pred HHHHHHhcCCEEEEEECCCceEEEECCHHHHHcCCCHHHHcCCchhhccCHhHHHHHHHhccccCCCCcccccCcccccc
Confidence 4699999999999998 89999943 332 7788 6665422 1234332 111122233
Q ss_pred CCCCCceeEEeeecccC
Q psy14584 347 LCPGARRSFFCRMKCKH 363 (563)
Q Consensus 347 ~~~g~~RsFfcRMKctl 363 (563)
.+. .+|+|||||||+.
T Consensus 97 ~~~-~~rsF~CRmr~~~ 112 (309)
T 3gdi_A 97 ECM-EEKSFFCRVSVGK 112 (309)
T ss_dssp -----CCCEEEEECCCC
T ss_pred ccC-CceeEEEEEEccc
Confidence 343 4899999999974
No 34
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=92.74 E-value=0.19 Score=40.57 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=34.6
Q ss_pred EEEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEEEc
Q psy14584 521 FLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTLI 562 (563)
Q Consensus 521 ftfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~Vi 562 (563)
+.+-||++.++|.++|++..+..+++. ..++..+|+++.-|
T Consensus 66 ~~~e~r~~~~dG~~~w~~~~~~~~~d~-~G~~~~~~G~~~Di 106 (115)
T 3h9w_A 66 HEADYRALHRDGHYVWIRDVVHVVRDD-SGEVEALIGFMFDI 106 (115)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEECT-TSCEEEEEEEEEEC
T ss_pred ccEEEEEEcCCCCEEEEEEEEEEEECC-CCCEEEEEEEEecc
Confidence 555699999999999999999999875 46788888888755
No 35
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=84.64 E-value=1.5 Score=37.01 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=32.3
Q ss_pred cEEEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEE
Q psy14584 520 KFLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNT 560 (563)
Q Consensus 520 KftfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~ 560 (563)
.|.+-||++.++|.|+|+...+..+++. ..++..+|++..
T Consensus 81 ~~~~e~r~~~~~G~~~w~~~~~~~~~d~-~g~~~~~~G~~~ 120 (142)
T 3mr0_A 81 TYDVEYRVRTRSGDFRWIQSRGQALWNS-AGEPYRMVGWIM 120 (142)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEEEECT-TSCEEEEEEEEE
T ss_pred ceEEEEEEECCCCCEEEEEEEEEEEECC-CCCEEEEEEEEE
Confidence 3455599999999999999999999875 456777777754
No 36
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=78.33 E-value=0.9 Score=36.86 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=33.1
Q ss_pred hhhhcCCceeEEeccccee------------eeCccccCCceeeccChhhHhhhhhh
Q psy14584 147 SKKRKGGSSFQHGCAISDL------------SAQGELLGQSWFDILHPKDVAKVKEQ 191 (563)
Q Consensus 147 l~q~~dGfl~v~~~~~g~i------------~sq~~~tG~S~yd~~hP~D~~kvkEQ 191 (563)
|+..+.-+++++..+ |.| |++.+++|.++++++||+|...+.+.
T Consensus 7 l~e~~~d~i~~~d~~-g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~ 62 (121)
T 3f1p_B 7 NVCQPTRFISRHNIE-GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDS 62 (121)
T ss_dssp -CCCCCEEEEEECTT-SBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHH
T ss_pred eecCCCceEEEECCC-ceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHH
Confidence 345555667777766 555 78899999999999999997766654
No 37
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=72.44 E-value=8.7 Score=29.84 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=29.3
Q ss_pred EEEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEE
Q psy14584 521 FLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKN 559 (563)
Q Consensus 521 ftfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn 559 (563)
+.+-||++.++|.++|+...+..+++.. .++..++++-
T Consensus 77 ~~~e~r~~~~~g~~~w~~~~~~~~~~~~-g~~~~~~g~~ 114 (118)
T 3icy_A 77 LTLVYRIVTPEGKLHWIEDHMRSSFSDD-GLFSGIDGIL 114 (118)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEECTT-SCEEEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEEEEEEEECCC-CCEEEEEEEE
Confidence 4445999999999999999999998764 4555566553
No 38
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=70.88 E-value=9.7 Score=29.58 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=30.6
Q ss_pred EEEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEE
Q psy14584 521 FLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNT 560 (563)
Q Consensus 521 ftfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~ 560 (563)
+.+-||+..++|.++|++..+..+.+. ..++..++++-.
T Consensus 80 ~~~e~~~~~~~g~~~~~~~~~~~~~~~-~g~~~~~~g~~~ 118 (125)
T 3nja_A 80 FDVEYRIVRPDGQVRELLERNHIQRQA-SGQVDHLWGTVI 118 (125)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEECT-TSCEEEEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEEeeEEEECC-CCCEEEEEEEEE
Confidence 455699999999999999999988875 455666666643
No 39
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=68.25 E-value=2 Score=34.36 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.1
Q ss_pred eeCccccCCceeeccChhhHhhhhhh
Q psy14584 166 SAQGELLGQSWFDILHPKDVAKVKEQ 191 (563)
Q Consensus 166 ~sq~~~tG~S~yd~~hP~D~~kvkEQ 191 (563)
|++.+++|.++++++||+|...+.+.
T Consensus 34 y~~~el~g~~~~~~~~p~d~~~~~~~ 59 (117)
T 3f1p_A 34 YHPEELLGRSAYEFYHALDSENMTKS 59 (117)
T ss_dssp CCHHHHTTSBGGGGBCGGGHHHHHHH
T ss_pred CCHHHHcCCchhheECHHHHHHHHHH
Confidence 77889999999999999997766554
No 40
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=61.45 E-value=3.2 Score=35.85 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=41.0
Q ss_pred ccccchhhhhhhhhhcCCceeEEeccccee------------eeCccccCCceeeccChhhHhhh
Q psy14584 136 MEYQQADSTRKSKKRKGGSSFQHGCAISDL------------SAQGELLGQSWFDILHPKDVAKV 188 (563)
Q Consensus 136 ~~~~~~~~~~~l~q~~dGfl~v~~~~~g~i------------~sq~~~tG~S~yd~~hP~D~~kv 188 (563)
|.+++...+..+++.+.-.++++..+ |.| ++..+++|+++.++++|.+....
T Consensus 1 ~~~~~~~~l~~i~~~~~d~i~~~D~~-g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~ 64 (129)
T 3mfx_A 1 MEHSSLETIELFIQHLTEAMILVNAN-GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARY 64 (129)
T ss_dssp CCHHHHHHHHHHHTTCSSEEEEEETT-SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGG
T ss_pred CCchhHHHHHHHHhcCCceEEEECCC-CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHH
Confidence 56677888899999887778888876 777 67788999999998888765443
No 41
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=60.20 E-value=45 Score=26.54 Aligned_cols=36 Identities=14% Similarity=-0.000 Sum_probs=28.1
Q ss_pred EEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEE
Q psy14584 523 FVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKN 559 (563)
Q Consensus 523 fVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn 559 (563)
.-++++.|+|..+|++.....+.+.. .++..+|++-
T Consensus 78 ~e~~~~~~dG~~~~~~~~~~pi~~~~-g~~~~~v~~~ 113 (120)
T 2gj3_A 78 GVLVNRRKDKTLYLAELTVAPVLNEA-GETIYYLGMH 113 (120)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEECTT-SCEEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEEEEEEECCC-CCEEEEEEEe
Confidence 33788999999999999999888754 4566666654
No 42
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=58.05 E-value=57 Score=24.52 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=28.4
Q ss_pred EEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEE
Q psy14584 522 LFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKN 559 (563)
Q Consensus 522 tfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn 559 (563)
..-+|+..++|..+|++.....+.+.. .++..++++-
T Consensus 72 ~~~~~~~~~~g~~~~~~~~~~~~~~~~-g~~~~~~~~~ 108 (115)
T 4eet_B 72 TVQLINYTKSGKKFWNLLHLQPVRDQK-GELQYFIGVQ 108 (115)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEECTT-SCEEEEEEEE
T ss_pred ceEEEEecCCCCEEEEEEEEEEEECCC-CCEEEEEEEE
Confidence 334889999999999999999988764 4555666654
No 43
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=55.46 E-value=40 Score=27.84 Aligned_cols=36 Identities=11% Similarity=-0.060 Sum_probs=27.8
Q ss_pred EEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEE
Q psy14584 522 LFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISK 558 (563)
Q Consensus 522 tfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcv 558 (563)
.+-+++..++|.++|+......+.+.. .++..+|++
T Consensus 110 ~~e~~~~~~~g~~~~~~~~~~~i~~~~-g~~~~~~~~ 145 (166)
T 3ue6_A 110 SVCLLNYRQDGTTFWNLFFVAGLRDSK-GNIVNYVGV 145 (166)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEECTT-SCEEEEEEE
T ss_pred EEEEEEEcCCCCEEEEEEEEEeeeCCC-CCEEEEEEE
Confidence 344888999999999999998888753 455566665
No 44
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=53.83 E-value=20 Score=27.33 Aligned_cols=40 Identities=3% Similarity=-0.211 Sum_probs=30.6
Q ss_pred cEEEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEE
Q psy14584 520 KFLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNT 560 (563)
Q Consensus 520 KftfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~ 560 (563)
.+.+-||+..++|.++|+...+..+.+.. .++..++++-.
T Consensus 83 ~~~~e~~~~~~~g~~~~~~~~~~~~~~~~-g~~~~~~~~~~ 122 (125)
T 3eeh_A 83 SADVECRVNATEEYQRWVWIQGEPITNDA-GETVRVAGFAR 122 (125)
T ss_dssp CEEEEEEECGGGTTCEEEEEEEEEEECTT-SCEEEEEEEEE
T ss_pred CccEEEEEEcCCCCEEEEEEecEEEECCC-CCEEEEEEEEE
Confidence 34455999999999999999999998763 55666666544
No 45
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=52.34 E-value=9.4 Score=29.62 Aligned_cols=51 Identities=6% Similarity=0.020 Sum_probs=35.5
Q ss_pred hhhhhhhhhhcCCceeEEeccccee-----------eeCccccCC--ceeeccChhhHhhhhhh
Q psy14584 141 ADSTRKSKKRKGGSSFQHGCAISDL-----------SAQGELLGQ--SWFDILHPKDVAKVKEQ 191 (563)
Q Consensus 141 ~~~~~~l~q~~dGfl~v~~~~~g~i-----------~sq~~~tG~--S~yd~~hP~D~~kvkEQ 191 (563)
++.++.+++.+...++++..++..+ +++.++.|. .+.+++||+|...+.+.
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~ 66 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNA 66 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEEEcCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHH
Confidence 3567788888888888888774443 444555555 34789999998766554
No 46
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=50.66 E-value=62 Score=29.89 Aligned_cols=35 Identities=11% Similarity=0.058 Sum_probs=28.6
Q ss_pred EEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEE
Q psy14584 525 YQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNT 560 (563)
Q Consensus 525 YRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~ 560 (563)
+++..++|..+|+......+++.. .++..+|++-.
T Consensus 141 ~~~~~~dG~~~~~~~~~~pi~d~~-g~~~~~v~~~~ 175 (258)
T 3p7n_A 141 ILNYKKDGTPFRNAVLVAPIYDDD-DELLYFLGSQV 175 (258)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTT-SCSEEEEEEEE
T ss_pred EEEEcCCCCEEEEeeEEEEEEcCC-CCEEEEEEEee
Confidence 888899999999999999998864 45667776643
No 47
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=49.71 E-value=5.4 Score=31.75 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=29.0
Q ss_pred hcCCceeEEeccccee------------eeCccccCCceeeccChhhHhhhhhh
Q psy14584 150 RKGGSSFQHGCAISDL------------SAQGELLGQSWFDILHPKDVAKVKEQ 191 (563)
Q Consensus 150 ~~dGfl~v~~~~~g~i------------~sq~~~tG~S~yd~~hP~D~~kvkEQ 191 (563)
.+.-+++++..+ |.| |++.+++|.++++++||.|...+.+.
T Consensus 11 ~~~~~i~~~d~~-g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~ 63 (121)
T 2kdk_A 11 KPTEFITRFAVN-GKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDK 63 (121)
T ss_dssp CSSEEEEEECTT-SBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHH
T ss_pred CCccEEEEECCC-eeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHH
Confidence 334455555554 555 77889999999999999987655443
No 48
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=49.59 E-value=57 Score=31.39 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=28.2
Q ss_pred EEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEE
Q psy14584 525 YQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNT 560 (563)
Q Consensus 525 YRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~ 560 (563)
+|++.++|.++|++.....+.+.. .++..+|++..
T Consensus 89 ~~~~~~dG~~~~~~~~~~pi~d~~-g~~~~~v~~~~ 123 (332)
T 2wkq_A 89 LINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQL 123 (332)
T ss_dssp EEEECTTCCEEEEEEEEEEEECTT-SCEEEEEEEEE
T ss_pred EEEEcCCCCEEEEeeEEEEeEcCC-CCEEEEEEEec
Confidence 899999999999999999998763 45566666543
No 49
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=47.23 E-value=7.1 Score=40.09 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.0
Q ss_pred eeCccccCCceeeccChhhHhhhhh
Q psy14584 166 SAQGELLGQSWFDILHPKDVAKVKE 190 (563)
Q Consensus 166 ~sq~~~tG~S~yd~~hP~D~~kvkE 190 (563)
|.+.+++|.++++++||+|...+.+
T Consensus 179 Y~peELiG~s~~~~vHPdD~~~~~~ 203 (339)
T 3rty_A 179 YLPQDLIGRSIMDFYHHEDLSVMKE 203 (339)
T ss_dssp CCHHHHTTSBGGGGBCGGGHHHHHH
T ss_pred CCHHHHcCCcHHHEECHHHHHHHHH
Confidence 8889999999999999999776654
No 50
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=46.19 E-value=86 Score=24.45 Aligned_cols=36 Identities=11% Similarity=-0.033 Sum_probs=27.6
Q ss_pred EEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEE
Q psy14584 522 LFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISK 558 (563)
Q Consensus 522 tfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcv 558 (563)
.+-+++..++|..+|+...+..+.+.. .++..+|++
T Consensus 72 ~~e~~~~~~~g~~~~~~~~~~~i~~~~-g~~~~~~~~ 107 (128)
T 3t50_A 72 DIDIINYKKSGEAFWNRLHISPVHNAN-GRLQHFVSS 107 (128)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEECTT-SCEEEEEEE
T ss_pred eeEEEEEcCCCCEEEEEEEEEEEECCC-CCEEEEEEE
Confidence 344889999999999999999888764 455566654
No 51
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=40.71 E-value=90 Score=26.33 Aligned_cols=36 Identities=6% Similarity=-0.005 Sum_probs=28.2
Q ss_pred EEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEE
Q psy14584 523 FVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKN 559 (563)
Q Consensus 523 fVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn 559 (563)
+-+++..++|..+|+......+.+. ..++.++|++-
T Consensus 83 ~e~~~~~~dG~~~~~~~~~~pi~~~-~g~~~~~~~~~ 118 (176)
T 4hia_A 83 VVLRNYRANDEPFDNLLFLHPVGGR-PDAPDYFLGSQ 118 (176)
T ss_dssp EEEEEECTTCCEEEEEEEEEEESSB-TTBCSEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEEEEEeeCC-CCCeEEEEEEE
Confidence 3388889999999999999988875 34566666654
No 52
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=40.41 E-value=63 Score=25.51 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=30.0
Q ss_pred EEEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEE
Q psy14584 521 FLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNT 560 (563)
Q Consensus 521 ftfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~ 560 (563)
+..-++...|+|..+|++.....+.|. ..++..+|++-.
T Consensus 67 ~~~e~~~~~kdG~~~~~~~~~~pi~d~-~G~~~~~v~~~~ 105 (109)
T 1n9l_A 67 CSVRLLNYRKDGTPFWNLLTVTPIKTP-DGRVSKFVGVQV 105 (109)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEECT-TSCEEEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEEEEEEEECC-CCCEEEEEEEEE
Confidence 444578889999999999999999876 456666776643
No 53
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=39.77 E-value=23 Score=27.59 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=27.9
Q ss_pred cCCcceeEEeecCCcEEEEEEEEeeCCcEEEEEe
Q psy14584 506 LRPIQFLSRHALDGKFLFVYQFKNKGGTYVQLQS 539 (563)
Q Consensus 506 ~~~~eFvsRHslDgKftfVYRfl~K~GgyVwlqT 539 (563)
++..-|++|..-.|++.-||| -++|+|-|++.
T Consensus 25 ~gh~F~vF~n~~t~~~nVvYr--R~dG~yGlI~p 56 (57)
T 3k2t_A 25 LGHSFYVYTDAETNGTNIVYS--RKDGKYGLIET 56 (57)
T ss_dssp HTCSEEEEEBSSSCCEEEEEE--CTTSCEEEECC
T ss_pred CCCcEEEEEcCCCCCEEEEEE--eCCCCEEEEee
Confidence 466789999999999999999 58999999975
No 54
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=37.82 E-value=39 Score=27.12 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=29.1
Q ss_pred cCCcceeEEeecCCcEEEEEEEEeeCCcEEEEEeE
Q psy14584 506 LRPIQFLSRHALDGKFLFVYQFKNKGGTYVQLQSE 540 (563)
Q Consensus 506 ~~~~eFvsRHslDgKftfVYRfl~K~GgyVwlqT~ 540 (563)
++..-|++|..-.|++.-||| -++|+|-||+..
T Consensus 26 ~gh~F~vF~n~etg~~nVVYR--R~dG~yGlI~p~ 58 (66)
T 3lyv_A 26 LGHDFFIYTDSEDGATNILYR--REDGNLGLIEAK 58 (66)
T ss_dssp TTCSEEEEEETTTCSEEEEEE--CTTSSEEEEEEC
T ss_pred CCCcEEEEEeCCCCCEEEEEE--ECCCCEEEEEeC
Confidence 467789999999999999999 589999999875
No 55
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=37.32 E-value=52 Score=26.83 Aligned_cols=37 Identities=11% Similarity=-0.058 Sum_probs=27.9
Q ss_pred EEEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEE
Q psy14584 521 FLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISK 558 (563)
Q Consensus 521 ftfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcv 558 (563)
+..-+++..++|..+|+......+.+.. .++..+|++
T Consensus 110 ~~~e~~~~~~dG~~~~~~~~~~~i~~~~-g~~~~~v~~ 146 (149)
T 3d72_A 110 VQVEVVNFKKNGQRFVNFLTMIPVRDET-GEYRYSMGF 146 (149)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEECTT-SSEEEEEEE
T ss_pred eEEEEEEECCCCCEEEEEEEEEEEEcCC-CCEEEEEEE
Confidence 3444788899999999999999988753 455566654
No 56
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=37.20 E-value=84 Score=25.02 Aligned_cols=25 Identities=4% Similarity=-0.053 Sum_probs=20.1
Q ss_pred EEEEEEEEeeCCcEEEEEeEEEEee
Q psy14584 521 FLFVYQFKNKGGTYVQLQSEWKNFR 545 (563)
Q Consensus 521 ftfVYRfl~K~GgyVwlqT~~t~f~ 545 (563)
+.+-+|++.|+|..+|++.....+.
T Consensus 81 ~~~e~~~~~kdG~~~~v~~~~~~~~ 105 (117)
T 2r78_A 81 LREERTVWTRNGDQLTVELSAHLLP 105 (117)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEECT
T ss_pred EEEEEEEEecCCCEEEEEEEEEEec
Confidence 3444889999999999998877664
No 57
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=36.57 E-value=14 Score=28.55 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=29.8
Q ss_pred hhhhhhhhhcCCceeEEeccccee-----------eeCccccC--CceeeccChhhHhhhhhh
Q psy14584 142 DSTRKSKKRKGGSSFQHGCAISDL-----------SAQGELLG--QSWFDILHPKDVAKVKEQ 191 (563)
Q Consensus 142 ~~~~~l~q~~dGfl~v~~~~~g~i-----------~sq~~~tG--~S~yd~~hP~D~~kvkEQ 191 (563)
+.++.+++.+...++++..+++.+ +++.+..| ..+...+||.|...+.+.
T Consensus 7 ~~l~~~~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 69 (125)
T 3nja_A 7 KLLHTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRE 69 (125)
T ss_dssp ----------CCEEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHH
T ss_pred HHHHHHHHhCCeeEEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHH
Confidence 445667777777788888775555 56677888 677889999987665543
No 58
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=36.51 E-value=1.3e+02 Score=22.26 Aligned_cols=37 Identities=11% Similarity=-0.072 Sum_probs=28.1
Q ss_pred EEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEE
Q psy14584 522 LFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKN 559 (563)
Q Consensus 522 tfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn 559 (563)
.+-+++..++|..+|+......+.+.. .++..+|++-
T Consensus 79 ~~~~~~~~~~g~~~~~~~~~~~~~~~~-g~~~~~~~~~ 115 (124)
T 3lyx_A 79 TGEIRMLHKDGHIGWIESMCVPIYGEN-YQMVGALGIN 115 (124)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEECST-TCEEEEEEEE
T ss_pred cceEEEEccCCCEEEEEEEEEEEECCC-CCEEEEEEEE
Confidence 344888999999999999999888764 4555566553
No 59
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=36.24 E-value=32 Score=27.55 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=29.1
Q ss_pred cCCcceeEEeecCCcEEEEEEEEeeCCcEEEEEeEE
Q psy14584 506 LRPIQFLSRHALDGKFLFVYQFKNKGGTYVQLQSEW 541 (563)
Q Consensus 506 ~~~~eFvsRHslDgKftfVYRfl~K~GgyVwlqT~~ 541 (563)
++..-|++|..-.|++.-||| -++|+|-||+..-
T Consensus 25 ~gh~F~vF~n~etg~~nVVYR--R~dG~yGlI~p~~ 58 (65)
T 3ka5_A 25 LGHNFFVFQNGDSNEVNVVYK--RKDGNYGLIEPEL 58 (65)
T ss_dssp HTCSEEEEEETTTTEEEEEEE--CTTSCEEEEECC-
T ss_pred CCCcEEEEEeCCCCCEEEEEE--eCCCCEEEEEeCc
Confidence 467789999999999999999 5899999998753
No 60
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=33.28 E-value=70 Score=25.15 Aligned_cols=37 Identities=8% Similarity=-0.027 Sum_probs=26.3
Q ss_pred EEEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEE
Q psy14584 521 FLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKN 559 (563)
Q Consensus 521 ftfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn 559 (563)
+..-+|++.++|..+|+...+..+ +.- .....+|++-
T Consensus 74 ~~~e~~~~~~dG~~~~~~~~~~~~-~~~-~~~~~~v~~~ 110 (120)
T 3mqq_A 74 YADDRIMKRAGGELFWCHVTGRAL-DRT-APLAAGVWTF 110 (120)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEES-STT-STTSSEEEEE
T ss_pred ceEEEEEEeCCCCEEEEEEEEEEC-CCC-CCceeEEEEE
Confidence 334488999999999999999887 433 3345555543
No 61
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=32.93 E-value=64 Score=26.07 Aligned_cols=36 Identities=14% Similarity=0.031 Sum_probs=27.7
Q ss_pred EEEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEE
Q psy14584 521 FLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKN 559 (563)
Q Consensus 521 ftfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn 559 (563)
+.+-+++..|+|..+|+......+.+.. +..+|++-
T Consensus 73 ~~~e~~~~~kdG~~~~~~~~~~~~~~~~---~~~~~~~~ 108 (132)
T 2pr5_A 73 VTVQIQNYKKDGTMFWNELNIDPMEIED---KTYFVGIQ 108 (132)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEETT---EEEEEEEE
T ss_pred eEEEEEEEecCCCeeeeEEEEEeccCCC---eeEEEEEE
Confidence 4455888899999999999998887753 56666653
No 62
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=32.11 E-value=56 Score=29.87 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHhcCCCcccccCCccHHHHHHHHHHHHHHHh
Q psy14584 231 DKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIR 271 (563)
Q Consensus 231 dkiN~~i~eL~~lLP~~~~~~~KldKasILr~ai~yIk~L~ 271 (563)
-.|+-.|+.|.+++|.......+|-|--||+.|.+....|-
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~ 134 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALY 134 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999988764
No 63
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=31.31 E-value=1.6e+02 Score=21.87 Aligned_cols=34 Identities=12% Similarity=-0.003 Sum_probs=24.4
Q ss_pred EEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEE
Q psy14584 525 YQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKN 559 (563)
Q Consensus 525 YRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn 559 (563)
+++..++|..+|++.....+.+.. .++..++++-
T Consensus 77 ~~~~~~~g~~~~~~~~~~p~~~~~-g~~~~~~~~~ 110 (114)
T 3luq_A 77 DCFVRADGRTQWLRWEVRPWYEGE-GRVGGVVIFT 110 (114)
T ss_dssp EEEEC--CCEEEEEEEEEEEECTT-SCEEEEEEEE
T ss_pred eEEEcCCCcEEEEEEEEEEeECCC-CCEEEEEEEE
Confidence 589999999999999998888764 4555566553
No 64
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=31.00 E-value=33 Score=28.51 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=32.5
Q ss_pred hhhhhhhhhcCCceeEEeccccee-----------eeCccccC--CceeeccChhhHhhhhhh
Q psy14584 142 DSTRKSKKRKGGSSFQHGCAISDL-----------SAQGELLG--QSWFDILHPKDVAKVKEQ 191 (563)
Q Consensus 142 ~~~~~l~q~~dGfl~v~~~~~g~i-----------~sq~~~tG--~S~yd~~hP~D~~kvkEQ 191 (563)
+-++.++.++...++....+++.+ +++.+..+ ..+.+.+||+|...+...
T Consensus 9 ~rl~~~~~~~~~g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~ 71 (142)
T 3mr0_A 9 ERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAA 71 (142)
T ss_dssp CCHHHHHHHTTCEEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHH
T ss_pred HHHHHHHHhCCcEEEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHH
Confidence 446667888888888888776666 44444444 356889999997765544
No 65
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=30.52 E-value=19 Score=27.35 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=35.9
Q ss_pred hhhhhhhhhhcCCceeEEeccccee------------eeCccccCCc--eeeccChhhHhhhhhh
Q psy14584 141 ADSTRKSKKRKGGSSFQHGCAISDL------------SAQGELLGQS--WFDILHPKDVAKVKEQ 191 (563)
Q Consensus 141 ~~~~~~l~q~~dGfl~v~~~~~g~i------------~sq~~~tG~S--~yd~~hP~D~~kvkEQ 191 (563)
.+.++.+++.+...++++..+.|.+ +++.++.|.. +.+.+||.|...+.+.
T Consensus 10 ~~~~~~~~~~~~~~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (125)
T 3eeh_A 10 ERRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDT 74 (125)
T ss_dssp CHHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHH
Confidence 4567778888888888888874555 3445556655 6888999887655544
No 66
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=30.36 E-value=31 Score=38.06 Aligned_cols=34 Identities=6% Similarity=-0.065 Sum_probs=28.4
Q ss_pred EEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEE
Q psy14584 525 YQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKN 559 (563)
Q Consensus 525 YRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn 559 (563)
||++.|+|.++|+...++.++|.. .++..+|++.
T Consensus 592 ~~~~~~dG~~~~~~~~~~pv~d~~-G~v~g~v~i~ 625 (635)
T 4eho_A 592 VLLRGAGNRPLPLAVRADPVTRTE-DQSLGFVLIF 625 (635)
T ss_dssp CEECCSSSSCEECCCCEEEECSTT-SSCCEEEECC
T ss_pred EEEEccCCcEEEEEEEEEEEECCC-CCEEEEEEEE
Confidence 999999999999999999999864 4566666653
No 67
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=30.08 E-value=1.8e+02 Score=21.96 Aligned_cols=35 Identities=6% Similarity=0.238 Sum_probs=25.2
Q ss_pred EEEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEE
Q psy14584 521 FLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISK 558 (563)
Q Consensus 521 ftfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcv 558 (563)
+.+-+++..++|..+|+......+.+. ...+++++
T Consensus 79 ~~~e~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~ 113 (118)
T 3olo_A 79 YTFKTRYRSQSGRIFLVEMSLTFLEDQ---ERRFSCVF 113 (118)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEEET---TEEEEEEE
T ss_pred EEEEEEEEccCCCEEEEEEEEEEEEEC---CccEEEEE
Confidence 344488999999999999988877653 23455554
No 68
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=29.62 E-value=1.2e+02 Score=21.85 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=26.5
Q ss_pred EEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEE
Q psy14584 522 LFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISK 558 (563)
Q Consensus 522 tfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcv 558 (563)
..-+++..++|..+|+......+.+.. .++..++++
T Consensus 68 ~~~~~~~~~~g~~~~~~~~~~~~~~~~-g~~~~~~~~ 103 (110)
T 1byw_A 68 KVEIAFYRKDGSCFLCLVDVVPVKNED-GAVIMFILN 103 (110)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEECTT-CCEEEEEEE
T ss_pred eEEEEEEcCCCCEEEEEEEEEEeecCC-CCEEEEEEE
Confidence 344788899999999999998888754 344455554
No 69
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=28.09 E-value=1.2e+02 Score=23.36 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=27.6
Q ss_pred EEEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEE
Q psy14584 521 FLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISK 558 (563)
Q Consensus 521 ftfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcv 558 (563)
+.+-+++..++|.++|+......+.+.. .++..+|++
T Consensus 76 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~-g~~~~~~~~ 112 (146)
T 2v0u_A 76 VTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGV 112 (146)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEECTT-SCEEEEEEE
T ss_pred cceEEEEEecCCcEEEEEEEEEEeECCC-CCEEEEEEE
Confidence 4455888899999999999998888754 444455554
No 70
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=26.04 E-value=2.5e+02 Score=22.76 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=27.1
Q ss_pred EEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEE
Q psy14584 522 LFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISK 558 (563)
Q Consensus 522 tfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcv 558 (563)
.+-+++..++|..+|+...+..+.+.. .++..++++
T Consensus 100 ~~~~~~~~~~g~~~~~~~~~~~i~~~~-g~~~~~~~~ 135 (162)
T 3sw1_A 100 REVLRNYRKDGSAFWNELSITPVKSDF-DQRTYFIGI 135 (162)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEECSS-SSCEEEEEE
T ss_pred cceEEEECCCCCEEEEEEEEEEeecCC-CCEEEEEEE
Confidence 334888899999999999999888754 444555554
No 71
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=25.60 E-value=40 Score=25.23 Aligned_cols=46 Identities=11% Similarity=-0.008 Sum_probs=32.1
Q ss_pred ccchhhhhhhhhhcCCceeEEeccccee------------eeCccccCCceeeccChhh
Q psy14584 138 YQQADSTRKSKKRKGGSSFQHGCAISDL------------SAQGELLGQSWFDILHPKD 184 (563)
Q Consensus 138 ~~~~~~~~~l~q~~dGfl~v~~~~~g~i------------~sq~~~tG~S~yd~~hP~D 184 (563)
....+.+..++..+...++++..+ |.| ++..+++|..+....++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~i~~~d~~-~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~ 60 (124)
T 3lyx_A 3 VDILKQRAKAFDYVFDAIVVTDLQ-GFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGD 60 (124)
T ss_dssp -CHHHHHHHGGGTCSSEEEEEETT-CBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTT
T ss_pred hhHHHHHHHHHhhcCceEEEECCC-CcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcch
Confidence 445667788889888888888876 666 4556778887775545544
No 72
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=25.18 E-value=1.2e+02 Score=27.31 Aligned_cols=38 Identities=16% Similarity=-0.008 Sum_probs=29.3
Q ss_pred EEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEEEE
Q psy14584 522 LFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNT 560 (563)
Q Consensus 522 tfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcvn~ 560 (563)
..-++++.|+|..+|++.....+.+.. .++..+|++..
T Consensus 61 ~~e~~~~~~dG~~~~~~~~~~p~~d~~-g~~~~~~~~~~ 98 (227)
T 3ewk_A 61 QGEFCNRRKDGTRYWVDSTIVPLMDNA-GKPRQYISIRR 98 (227)
T ss_dssp EEEEEEECSSSCEEEEEEEEEEEECSS-SCEEEEEEEEE
T ss_pred EEEEEEEcCCCCEEeeeeEEEEEEcCC-CCEEEEEEEEE
Confidence 334888999999999999999998764 45666666543
No 73
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=24.79 E-value=28 Score=29.58 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=35.9
Q ss_pred ccccchhhhhhhhhhcCCceeEEecc--ccee------------eeCccccCCceeeccChhh
Q psy14584 136 MEYQQADSTRKSKKRKGGSSFQHGCA--ISDL------------SAQGELLGQSWFDILHPKD 184 (563)
Q Consensus 136 ~~~~~~~~~~~l~q~~dGfl~v~~~~--~g~i------------~sq~~~tG~S~yd~~hP~D 184 (563)
|..+|.+.+..++..+.-.++++..+ +|.| +++.+++|..+.++.+|.+
T Consensus 1 m~~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~ 63 (176)
T 4hia_A 1 MDQKQFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDE 63 (176)
T ss_dssp CTHHHHHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTC
T ss_pred CcHHHHHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCC
Confidence 34456677888888887777777765 2555 6778899999888888865
No 74
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=23.32 E-value=38 Score=27.43 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=30.7
Q ss_pred hhhhhhhcCCceeEEeccccee------------eeCccccCCceeeccChhhHh
Q psy14584 144 TRKSKKRKGGSSFQHGCAISDL------------SAQGELLGQSWFDILHPKDVA 186 (563)
Q Consensus 144 ~~~l~q~~dGfl~v~~~~~g~i------------~sq~~~tG~S~yd~~hP~D~~ 186 (563)
++.++..+...++++..+ |.| |+..+++|+++.++++|.+..
T Consensus 18 ~~~l~~~~~d~i~~~d~~-g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~ 71 (130)
T 1d06_A 18 LRSILDTVPDATVVSATD-GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRH 71 (130)
T ss_dssp HHHHHTTCSSEEEEEETT-SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHH
T ss_pred HHHHHhhCcCeEEEECCC-CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHH
Confidence 555677766666777765 666 777899999988888876543
No 75
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=22.25 E-value=1.5e+02 Score=21.91 Aligned_cols=37 Identities=11% Similarity=-0.086 Sum_probs=26.6
Q ss_pred EEEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEE
Q psy14584 521 FLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISK 558 (563)
Q Consensus 521 ftfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcv 558 (563)
+.+-+++..++|..+|+......+.+.. .++..++++
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~-g~~~~~~~~ 116 (130)
T 2z6d_A 80 YCGRLLNYKKDGTPFWNLLTVTPIKDDQ-GNTIKFIGM 116 (130)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEECTT-SCEEEEEEE
T ss_pred ceeEEEEEcCCCcEEEEEEEEEEEECCC-CCeeEEEEE
Confidence 3444788899999999999998888754 344445443
No 76
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=21.16 E-value=11 Score=34.13 Aligned_cols=25 Identities=8% Similarity=0.333 Sum_probs=19.9
Q ss_pred eeC--ccccCCceeeccChhhHh--hhhh
Q psy14584 166 SAQ--GELLGQSWFDILHPKDVA--KVKE 190 (563)
Q Consensus 166 ~sq--~~~tG~S~yd~~hP~D~~--kvkE 190 (563)
+.+ .|++|.++|++.||.|.+ .+++
T Consensus 31 ~~~g~qdLlGrsiy~f~H~~D~~~s~l~~ 59 (132)
T 1oj5_A 31 GRTGWEDLVRKCIYAFFQPQGREPSYARQ 59 (132)
T ss_dssp CCSCHHHHHHHHHHHHTSCBTTBCCHHHH
T ss_pred ccccHHHHHHHHHHHHhCcccchHHHHHH
Confidence 455 699999999999999955 4444
No 77
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=21.13 E-value=2.7e+02 Score=21.04 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=23.0
Q ss_pred EEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEE
Q psy14584 523 FVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISK 558 (563)
Q Consensus 523 fVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcv 558 (563)
+-+++..++|.++|+......+.. .....++++
T Consensus 71 ~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~ 103 (126)
T 3mjq_A 71 LPLSLEKKEGTSIPAKARIWQGKW---HNEPCLFAI 103 (126)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEES---SSSEEEEEE
T ss_pred eEEEEEccCCCEEEEEEEEEeeeE---CCceEEEEE
Confidence 338899999999999998875543 223445544
No 78
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=20.18 E-value=2.1e+02 Score=21.72 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=26.8
Q ss_pred EEEEEEEEeeCCcEEEEEeEEEEeecCCCCCccEEEEE
Q psy14584 521 FLFVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISK 558 (563)
Q Consensus 521 ftfVYRfl~K~GgyVwlqT~~t~f~Np~s~~~e~IVcv 558 (563)
+..-+++..++|..+|+......+.+.. .++..++++
T Consensus 95 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~-g~~~~~~~~ 131 (138)
T 2l0w_A 95 RKVEIAFYRKDGSCFLCLVDVVPVKNED-GAVIMFILN 131 (138)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEECTT-SCEEEEEEE
T ss_pred ceeEEEEECCCCCEEEEEEEEEEEeCCC-CCEEEEEEE
Confidence 3444788899999999999998887653 444555544
Done!