RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14584
(563 letters)
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 62.1 bits (151), Expect = 5e-13
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 219 RQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSR--KLDKLTVLRMAVQHLKTIR 271
R H+E+E+RRRDK+N +I +LS ++P S K +L A +++ +R
Sbjct: 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60
Score = 39.0 bits (91), Expect = 5e-05
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 305 QNHSEIEKRRRDKMNTYITELSAMVPTLL 333
H+E+E+RRRDK+N +I +LS ++P
Sbjct: 7 AQHNEVERRRRDKINNWIVQLSKIIPDSS 35
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 63
Score = 59.9 bits (145), Expect = 2e-12
Identities = 12/63 (19%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 217 VSRQNHSEIEKRRRDKMNTYITELSAMVPMC---HAMSRKLDKLTVLRMAVQHLKTIRGA 273
+ R++H E+ RR+++ + EL++++P +S K T + A ++++ ++
Sbjct: 1 MKRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN 60
Query: 274 VHS 276
+
Sbjct: 61 GST 63
Score = 41.8 bits (98), Expect = 6e-06
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 305 QNHSEIEKRRRDKMNTYITELSAMVPTLLPVKTAD 339
++H E+ RR+++ + EL++++P +
Sbjct: 4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVS 38
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 59.5 bits (144), Expect = 6e-12
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 219 RQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYT 278
R +H+ +E++RRD + L VP K + +L A ++++ +R H++
Sbjct: 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQ--GEKASRAQILDKATEYIQYMRRKNHTHQ 60
Query: 279 E 279
+
Sbjct: 61 Q 61
Score = 37.9 bits (88), Expect = 2e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 305 QNHSEIEKRRRDKMNTYITELSAMVPTLLPVKT 337
+H+ +E++RRD + L VP+L K
Sbjct: 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA 36
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 58.4 bits (141), Expect = 1e-11
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 218 SRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSY 277
SR H+E+EK RR + + +L +VP+ + L++L A H+K + +
Sbjct: 1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDS-SRHTTLSLLTKAKLHIKKLEDSDRKA 59
Query: 278 TE 279
Sbjct: 60 VH 61
Score = 39.5 bits (92), Expect = 6e-05
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 305 QNHSEIEKRRRDKMNTYITELSAMVPTLLPVKTAD 339
H+E+EK RR + + +L +VP
Sbjct: 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHT 37
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 53.8 bits (129), Expect = 6e-10
Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 215 LPVSRQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAV 274
+ V R+ H+ +E++RR+++ L +P K K+ +L+ A ++ +++
Sbjct: 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENN-EKAPKVVILKKATAYILSVQAEE 61
Query: 275 HSYTE 279
Sbjct: 62 QKLIS 66
Score = 38.0 bits (88), Expect = 3e-04
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 305 QNHSEIEKRRRDKMNTYITELSAMVPTLLPVKTADIPA 342
+ H+ +E++RR+++ L +P L + A
Sbjct: 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVV 45
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 53.3 bits (128), Expect = 6e-10
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 219 RQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVH 275
R+ + E+RR K+N L +++L K+ +LR A+++++ ++ +
Sbjct: 13 RKAATMRERRRLSKVNEAFETLKRSTSSNP--NQRLPKVEILRNAIRYIEGLQALLR 67
Score = 36.4 bits (84), Expect = 6e-04
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 305 QNHSEIEKRRRDKMNTYITELSAMVPTL 332
+ + E+RR K+N L +
Sbjct: 14 KAATMRERRRLSKVNEAFETLKRSTSSN 41
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 53.0 bits (127), Expect = 9e-10
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 219 RQNHSEIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIR 271
R H+ IEKR R +N I EL +V KL+K VLR A+ +++ ++
Sbjct: 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTE---AKLNKSAVLRKAIDYIRFLQ 56
Score = 35.3 bits (81), Expect = 0.002
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 305 QNHSEIEKRRRDKMNTYITELSAMVPT 331
H+ IEKR R +N I EL +V
Sbjct: 8 TAHNAIEKRYRSSINDKIIELKDLVVG 34
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator
1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 109
Score = 43.9 bits (103), Expect = 3e-06
Identities = 5/40 (12%), Positives = 13/40 (32%)
Query: 523 FVYQFKNKGGTYVQLQSEWKNFRNPWTKDIEYLISKNTLI 562
Y+F GT + + K +++ + +
Sbjct: 68 PSYRFILNDGTMLSAHTRCKLCYPQSPDMQPFIMGIHIID 107
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 38.2 bits (89), Expect = 1e-04
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 230 RDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYTE 279
R +N I EL +V K+ K VLR A+ ++K ++ H +
Sbjct: 1 RSSINDKIIELKDLVMGT---DAKMHKSGVLRKAIDYIKYLQQVNHKLRQ 47
Score = 24.7 bits (54), Expect = 5.9
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 315 RDKMNTYITELSAMVP 330
R +N I EL +V
Sbjct: 1 RSSINDKIIELKDLVM 16
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas
palustris [TaxId: 1076]}
Length = 114
Score = 36.8 bits (85), Expect = 0.001
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 167 AQGELLGQSWFDILHPKDVAKVKEQLFSSDLSPRERL 203
LL L A++ L D + +
Sbjct: 44 PPASLLNVPIAHYLTAASAARLTHALHGGDPAAINPI 80
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga
maritima [TaxId: 2336]}
Length = 66
Score = 28.4 bits (64), Expect = 0.32
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 290 QELKHLILQAAEGFLQNHSEIEKRRRD--KMNTYITE 324
++L L Q A G L+N S I+ +RD ++ T + E
Sbjct: 23 RQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILRE 59
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia
coli [TaxId: 562]}
Length = 60
Score = 27.6 bits (62), Expect = 0.51
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 290 QELKHLILQAAEGFLQNHSEIEKRRRD--KMNTYITE 324
+E +L +QAA G LQ +++ RRD ++ T + E
Sbjct: 23 REQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNE 59
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus
radiodurans [TaxId: 1299]}
Length = 66
Score = 27.3 bits (61), Expect = 0.79
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 290 QELKHLILQAAEGFLQNHSEIEKRRRD--KMNTYITE 324
+EL L QAA G L + + RR+ ++NT E
Sbjct: 23 KELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAE 59
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 28.8 bits (64), Expect = 0.84
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 13/91 (14%)
Query: 159 GCAISDLSAQGELLGQSWFDILHPKDVAKVKEQLFSSDLSPRERLIDVKSKQVIVGLPVS 218
G ++ +QGEL+ Q F + PK + + RER + + ++ V
Sbjct: 2 GFDE-NIESQGELILQESFQVWDPKTLIR----------KGRERHLFLFEMSLVFSKEVK 50
Query: 219 RQ--NHSEIEKRRRDKMNTYITELSAMVPMC 247
+ K + +TE P
Sbjct: 51 DSSGRSKYLYKSKLFTSELGVTEHVEGDPCK 81
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 28.1 bits (61), Expect = 1.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 511 FLSRHALDGKFLFV 524
FLSRH++D KF +
Sbjct: 8 FLSRHSMDMKFTYC 21
>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 147
Score = 27.8 bits (61), Expect = 2.1
Identities = 21/152 (13%), Positives = 41/152 (26%), Gaps = 19/152 (12%)
Query: 164 DLSAQGELLGQSWFDILHPKDVAKVKEQLFSSDLSPRERLIDVKSKQVIVGLPVSRQNHS 223
+L G+LL Q F + K + + P +R + + K V+
Sbjct: 6 NLGDLGKLLMQGSFSVWTDHKKGHTKVKEL-ARFKPMQRHLFLHEKAVLFC------KKR 58
Query: 224 EIEKRRRDKMNTYITELSAMVPMCHAMSRKLDKLTVLRMAVQHLKTIRGAVHSYTEGHYK 283
E +K +Y + M + K + + Y
Sbjct: 59 EENGEGYEKAPSYS--YKQSLNMTAVGITENVKGDTKKFEI----WYNAREEVYI----- 107
Query: 284 PAFLTDQELKHLILQAAEGFLQNHSEIEKRRR 315
E+K + A L + + +
Sbjct: 108 -IQAPTPEIKAAWVNAIRKVLTSQLQACREAS 138
>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 119
Score = 26.4 bits (58), Expect = 4.1
Identities = 7/79 (8%), Positives = 24/79 (30%), Gaps = 14/79 (17%)
Query: 162 ISDLSAQGELLGQSWFDILHPKDVAKVKEQLFSSDLSPRERLIDVKSKQVIVGLPVSRQN 221
+ D G ++ F + + P+ R + + +++ + +
Sbjct: 1 MGDTGKLGRIIRHDAFQVWEGDE-------------PPKLRYVFLFRNKIMFTEQDASTS 47
Query: 222 HSEIEKRRRDKMNTY-ITE 239
+++ Y I +
Sbjct: 48 PPSYTHYSSIRLDKYNIRQ 66
>d2j0121 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Thermus
thermophilus [TaxId: 274]}
Length = 51
Score = 24.9 bits (55), Expect = 4.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 290 QELKHLILQAAEGFLQNHSEIEKRRRD 316
+EL L QA+ G L + +I +R
Sbjct: 19 RELMELRFQASIGQLSQNHKIRDLKRQ 45
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 65
Score = 25.3 bits (56), Expect = 4.2
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 290 QELKHL-ILQAAEGFLQNHSEIEKRRRD--KMNTYITE 324
EL + +QAA G +N I++ R+ ++ T E
Sbjct: 25 TELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGE 62
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 27.6 bits (60), Expect = 4.4
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 352 RRSFFCRMKCKHTPASSSSSSSSNSAPST-QPGP 384
R + C P +S++ S T Q P
Sbjct: 314 RNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAP 347
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.128 0.372
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,964,097
Number of extensions: 88042
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 31
Length of query: 563
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 473
Effective length of database: 1,171,896
Effective search space: 554306808
Effective search space used: 554306808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.0 bits)