BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14585
         (66 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YAA|A Chain A, Aspartate Aminotransferase From Saccharomyces Cerevisiae
          Cytoplasm
 pdb|1YAA|B Chain B, Aspartate Aminotransferase From Saccharomyces Cerevisiae
          Cytoplasm
 pdb|1YAA|C Chain C, Aspartate Aminotransferase From Saccharomyces Cerevisiae
          Cytoplasm
 pdb|1YAA|D Chain D, Aspartate Aminotransferase From Saccharomyces Cerevisiae
          Cytoplasm
          Length = 412

 Score = 25.4 bits (54), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 7/46 (15%)

Query: 21 PPSPQSGGAPTTGNDEAAMAVIMSLLEADAGLGGPVDFSGLPWPLP 66
          PP    G     G D+ A  V       D G+G   D +G PW LP
Sbjct: 12 PPDALFGIKQRYGQDQRATKV-------DLGIGAYRDDNGKPWVLP 50


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.134    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,241,658
Number of Sequences: 62578
Number of extensions: 71933
Number of successful extensions: 86
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 6
length of query: 66
length of database: 14,973,337
effective HSP length: 37
effective length of query: 29
effective length of database: 12,657,951
effective search space: 367080579
effective search space used: 367080579
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)