Query psy14585
Match_columns 66
No_of_seqs 27 out of 29
Neff 2.0
Searched_HMMs 29240
Date Fri Aug 16 23:40:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ptf_A Histidine-containing ph 31.7 45 0.0015 19.4 2.9 21 33-54 67-88 (88)
2 1sph_A Histidine-containing ph 30.9 44 0.0015 19.4 2.8 21 33-54 67-88 (88)
3 3bb7_A Interpain A; cysteine p 30.8 19 0.00067 25.8 1.4 19 35-53 117-136 (321)
4 1y51_A Phosphocarrier protein 23.3 75 0.0025 18.4 2.8 21 33-54 67-88 (88)
5 1uzc_A Hypothetical protein FL 21.5 1.2E+02 0.004 17.5 3.4 18 31-48 10-27 (71)
6 1ka5_A Phosphocarrier protein 21.0 83 0.0028 18.2 2.7 21 33-54 67-88 (88)
7 3ksm_A ABC-type sugar transpor 20.2 97 0.0033 18.6 3.0 27 28-58 189-215 (276)
8 2b7e_A PRE-mRNA processing pro 17.6 61 0.0021 18.8 1.6 13 36-48 3-15 (59)
9 2xuv_A HDEB, 10K-L protein; un 17.0 1.4E+02 0.0049 17.8 3.2 28 33-60 15-42 (79)
10 1zkz_A Growth/differentiation 15.3 45 0.0015 20.3 0.6 10 55-64 14-23 (110)
No 1
>1ptf_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 1.60A {Enterococcus faecalis} SCOP: d.94.1.1 PDB: 1qfr_A 1fu0_A*
Probab=31.67 E-value=45 Score=19.39 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=15.8
Q ss_pred CCh-HHHHHHHHHHHHHhcCCCC
Q psy14585 33 GND-EAAMAVIMSLLEADAGLGG 54 (66)
Q Consensus 33 ~ND-eaaMA~~MslLEAD~gLG~ 54 (66)
+.| +.|+.++-.|++. .|+|+
T Consensus 67 G~De~~A~~~l~~l~~~-~~~ge 88 (88)
T 1ptf_A 67 GADEAEGMAAIVETLQK-EGLAE 88 (88)
T ss_dssp STTHHHHHHHHHHHHHH-TTCC-
T ss_pred CCCHHHHHHHHHHHHHH-cCCCC
Confidence 344 7889999999996 77774
No 2
>1sph_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 2.00A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1jem_A* 2hid_A 2hpr_A
Probab=30.87 E-value=44 Score=19.38 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=16.3
Q ss_pred CCh-HHHHHHHHHHHHHhcCCCC
Q psy14585 33 GND-EAAMAVIMSLLEADAGLGG 54 (66)
Q Consensus 33 ~ND-eaaMA~~MslLEAD~gLG~ 54 (66)
+.| +.|+.++-.|++. .|+|+
T Consensus 67 G~De~~A~~~l~~l~~~-~~~ge 88 (88)
T 1sph_A 67 GADENDALNALEETMKS-EGLGE 88 (88)
T ss_dssp STTHHHHHHHHHHHHHH-TTSBC
T ss_pred CCCHHHHHHHHHHHHHH-cCCCC
Confidence 344 7899999999996 77764
No 3
>3bb7_A Interpain A; cysteine protease, zymogen activation, bacterial odontopatho hydrolase; 1.50A {Prevotella intermedia} PDB: 3bba_A
Probab=30.83 E-value=19 Score=25.84 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHH-HhcCCC
Q psy14585 35 DEAAMAVIMSLLE-ADAGLG 53 (66)
Q Consensus 35 DeaaMA~~MslLE-AD~gLG 53 (66)
=-+|||-||.|++ -..|.|
T Consensus 117 VAtA~AQIM~y~~~P~~g~G 136 (321)
T 3bb7_A 117 VATATAQVLNYFKYPVRGIG 136 (321)
T ss_dssp HHHHHHHHHHHHTCCSBCCS
T ss_pred HHHHHHHHHHHhCCCCCCCC
Confidence 3699999999999 444554
No 4
>1y51_A Phosphocarrier protein HPR; bacillus stearothermophilus HPR F29W mutant, transport protein; 1.65A {Geobacillus stearothermophilus} PDB: 1y50_A 1y4y_A 2nzu_L* 1rzr_T* 2nzv_L* 2oen_L* 2fep_S* 3oqm_S* 3oqn_S* 3oqo_S*
Probab=23.28 E-value=75 Score=18.36 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=15.8
Q ss_pred CCh-HHHHHHHHHHHHHhcCCCC
Q psy14585 33 GND-EAAMAVIMSLLEADAGLGG 54 (66)
Q Consensus 33 ~ND-eaaMA~~MslLEAD~gLG~ 54 (66)
+.| +.|+.++-.|++. .|+|+
T Consensus 67 G~De~~A~~~l~~l~~~-~~f~e 88 (88)
T 1y51_A 67 GADAAEAMAALTDTLAK-EGLAE 88 (88)
T ss_dssp STTHHHHHHHHHHHHHH-TTCBC
T ss_pred CCCHHHHHHHHHHHHHh-cCCCC
Confidence 444 7899999999986 46664
No 5
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.48 E-value=1.2e+02 Score=17.53 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.4
Q ss_pred CCCChHHHHHHHHHHHHH
Q psy14585 31 TTGNDEAAMAVIMSLLEA 48 (66)
Q Consensus 31 ~~~NDeaaMA~~MslLEA 48 (66)
...+.|.|.++|+.+|+.
T Consensus 10 ~~~t~eea~~~F~~LL~e 27 (71)
T 1uzc_A 10 TWNTKEEAKQAFKELLKE 27 (71)
T ss_dssp CCCSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 466889999999999975
No 6
>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} SCOP: d.94.1.1 PDB: 1qr5_A 1txe_A
Probab=21.02 E-value=83 Score=18.21 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=16.6
Q ss_pred CCh-HHHHHHHHHHHHHhcCCCC
Q psy14585 33 GND-EAAMAVIMSLLEADAGLGG 54 (66)
Q Consensus 33 ~ND-eaaMA~~MslLEAD~gLG~ 54 (66)
+.| +.|+.++-.|++. .|+|.
T Consensus 67 G~De~~A~~~l~~l~~~-~~~~~ 88 (88)
T 1ka5_A 67 GSDESDAIQAISDVLSK-EGLTK 88 (88)
T ss_dssp SSSHHHHHHHHHHHHHH-HTSBC
T ss_pred CCCHHHHHHHHHHHHHH-cCCCC
Confidence 444 7899999999995 88874
No 7
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=20.21 E-value=97 Score=18.60 Aligned_cols=27 Identities=15% Similarity=0.407 Sum_probs=17.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHhcCCCCCccC
Q psy14585 28 GAPTTGNDEAAMAVIMSLLEADAGLGGPVDF 58 (66)
Q Consensus 28 g~~~~~NDeaaMA~~MslLEAD~gLG~p~Df 58 (66)
..-.|.||..|++++-.+-| .|+ |.|+
T Consensus 189 ~ai~~~~d~~a~g~~~al~~--~g~--p~di 215 (276)
T 3ksm_A 189 DGLFTPNESTTIGALVAIRQ--SGM--SKQF 215 (276)
T ss_dssp CEEECCSHHHHHHHHHHHHH--TTC--TTSS
T ss_pred eEEEECCchhhhHHHHHHHH--cCC--CCCe
Confidence 44568999999887655544 355 5443
No 8
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=17.64 E-value=61 Score=18.77 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q psy14585 36 EAAMAVIMSLLEA 48 (66)
Q Consensus 36 eaaMA~~MslLEA 48 (66)
|.|.++||.+|..
T Consensus 3 eEae~aF~~lL~~ 15 (59)
T 2b7e_A 3 MEAEKEFITMLKE 15 (59)
T ss_dssp THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 5688999999974
No 9
>2xuv_A HDEB, 10K-L protein; unknown function; HET: MLY; 1.50A {Escherichia coli}
Probab=17.02 E-value=1.4e+02 Score=17.79 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCccCCC
Q psy14585 33 GNDEAAMAVIMSLLEADAGLGGPVDFSG 60 (66)
Q Consensus 33 ~NDeaaMA~~MslLEAD~gLG~p~Dfsd 60 (66)
.-|+.+|+.+...+|...+-+.+.|.-+
T Consensus 15 ~ld~~~~~~v~~W~~~~d~~~k~~D~vd 42 (79)
T 2xuv_A 15 DLNPXAMTPVAWWMLHEETVYXGGDTVT 42 (79)
T ss_dssp TSCHHHHHHHHHHHHHBTSBCCSCSBCC
T ss_pred hCCcccccceehheeccCCccCCCCccc
Confidence 3468899999999999888877766433
No 10
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Probab=15.33 E-value=45 Score=20.33 Aligned_cols=10 Identities=30% Similarity=0.890 Sum_probs=8.3
Q ss_pred CccCCCCCCC
Q psy14585 55 PVDFSGLPWP 64 (66)
Q Consensus 55 p~Dfsdi~W~ 64 (66)
-|||+||-|.
T Consensus 14 ~VdF~dlGW~ 23 (110)
T 1zkz_A 14 RVNFEDIGWD 23 (110)
T ss_dssp EEETTTTTCT
T ss_pred EEEeeccCCc
Confidence 3799999985
Done!