Query psy14585
Match_columns 66
No_of_seqs 27 out of 29
Neff 2.0
Searched_HMMs 13730
Date Fri Aug 16 23:40:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14585.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14585hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dkia_ d.3.1.1 (A:) Streptoco 42.9 8.8 0.00064 26.1 3.0 18 36-53 131-149 (335)
2 d1ls1a1 a.24.13.1 (A:1-88) Sig 26.1 8 0.00058 22.0 0.4 11 42-52 35-45 (88)
3 d1uzca_ a.159.2.1 (A:) Hypa/FB 26.1 28 0.0021 18.4 2.7 23 30-53 7-29 (69)
4 d1sxje1 a.80.1.1 (E:256-354) R 23.1 15 0.0011 21.5 1.3 14 34-47 86-99 (99)
5 d1j8yf1 a.24.13.1 (F:3-86) Sig 20.9 23 0.0017 19.7 1.7 12 41-52 30-41 (84)
6 d1dk8a_ a.91.1.1 (A:) Axin RGS 20.7 26 0.0019 19.5 2.0 18 33-50 20-37 (147)
7 d1fqia_ a.91.1.1 (A:) RGS9, RG 19.4 33 0.0024 19.0 2.2 16 34-49 23-38 (138)
8 d1ekga_ d.82.2.1 (A:) C-termin 17.7 24 0.0018 20.7 1.4 23 42-64 93-117 (119)
9 d1x4la1 g.39.1.3 (A:8-36) Four 17.1 16 0.0011 18.1 0.3 15 50-64 9-25 (29)
10 d2doda1 a.159.2.1 (A:651-719) 15.5 46 0.0033 17.6 2.1 16 36-52 10-25 (69)
No 1
>d1dkia_ d.3.1.1 (A:) Streptococcal pyrogenic exotoxin B {Streptococcus pyogenes [TaxId: 1314]}
Probab=42.91 E-value=8.8 Score=26.07 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHH-HhcCCC
Q psy14585 36 EAAMAVIMSLLE-ADAGLG 53 (66)
Q Consensus 36 eaaMA~~MslLE-AD~gLG 53 (66)
-+|||-||+|++ =+.|.|
T Consensus 131 atA~AQIM~Y~~~P~~g~g 149 (335)
T d1dkia_ 131 ATATAQIMKYHNYPNKGLK 149 (335)
T ss_dssp HHHHHHHHHHHTCCSBCCC
T ss_pred HHHHHHHHHHhcCCccccC
Confidence 589999999998 455655
No 2
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=26.11 E-value=8 Score=21.97 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=8.8
Q ss_pred HHHHHHHhcCC
Q psy14585 42 IMSLLEADAGL 52 (66)
Q Consensus 42 ~MslLEAD~gL 52 (66)
=.+|||||.++
T Consensus 35 r~ALLeADV~l 45 (88)
T d1ls1a1 35 RRALMDADVNL 45 (88)
T ss_dssp HHHHHHTTCCH
T ss_pred HHHHHHcccCH
Confidence 35799999876
No 3
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.06 E-value=28 Score=18.44 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=17.9
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCC
Q psy14585 30 PTTGNDEAAMAVIMSLLEADAGLG 53 (66)
Q Consensus 30 ~~~~NDeaaMA~~MslLEAD~gLG 53 (66)
....+-+.|.++|+.||+. .++.
T Consensus 7 ~~~~~keeak~~F~~LL~e-~~v~ 29 (69)
T d1uzca_ 7 YTWNTKEEAKQAFKELLKE-KRVP 29 (69)
T ss_dssp CCCCSHHHHHHHHHHHHHH-TTCC
T ss_pred cccccHHHHHHHHHHHHHH-cCCC
Confidence 3467789999999999986 3443
No 4
>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.14 E-value=15 Score=21.46 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=11.0
Q ss_pred ChHHHHHHHHHHHH
Q psy14585 34 NDEAAMAVIMSLLE 47 (66)
Q Consensus 34 NDeaaMA~~MslLE 47 (66)
.=||-+|.||..||
T Consensus 86 HLEaFvAkfM~~l~ 99 (99)
T d1sxje1 86 HLEGFIAKVMCCLD 99 (99)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcC
Confidence 34888999998875
No 5
>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=20.94 E-value=23 Score=19.69 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=9.4
Q ss_pred HHHHHHHHhcCC
Q psy14585 41 VIMSLLEADAGL 52 (66)
Q Consensus 41 ~~MslLEAD~gL 52 (66)
+=++|||||.++
T Consensus 30 Ir~ALLeADVn~ 41 (84)
T d1j8yf1 30 LQKSLISADVNV 41 (84)
T ss_dssp HHHHHHHTTCCH
T ss_pred HHHHHHhcccCH
Confidence 446899999875
No 6
>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.71 E-value=26 Score=19.54 Aligned_cols=18 Identities=11% Similarity=0.386 Sum_probs=15.2
Q ss_pred CChHHHHHHHHHHHHHhc
Q psy14585 33 GNDEAAMAVIMSLLEADA 50 (66)
Q Consensus 33 ~NDeaaMA~~MslLEAD~ 50 (66)
=+|..+..+|+.|||.+.
T Consensus 20 L~d~~~~~~F~~FL~~~~ 37 (147)
T d1dk8a_ 20 LDDQDGISLFRTFLKQEG 37 (147)
T ss_dssp TTCHHHHHHHHHHHHTTT
T ss_pred HcChHHHHHHHHHHHHhC
Confidence 367889999999999864
No 7
>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.38 E-value=33 Score=19.00 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=14.3
Q ss_pred ChHHHHHHHHHHHHHh
Q psy14585 34 NDEAAMAVIMSLLEAD 49 (66)
Q Consensus 34 NDeaaMA~~MslLEAD 49 (66)
+|..++..||.|||..
T Consensus 23 ~d~~~~~~F~~FL~~~ 38 (138)
T d1fqia_ 23 RDPKGRQSFQHFLRKE 38 (138)
T ss_dssp TSHHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHhHc
Confidence 6789999999999976
No 8
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.69 E-value=24 Score=20.67 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=15.8
Q ss_pred HHHHHHHhcC--CCCCccCCCCCCC
Q psy14585 42 IMSLLEADAG--LGGPVDFSGLPWP 64 (66)
Q Consensus 42 ~MslLEAD~g--LG~p~Dfsdi~W~ 64 (66)
|+.+|+.+-. +|.+++|+-++.+
T Consensus 93 L~~~L~~el~~~~g~~v~f~~l~~~ 117 (119)
T d1ekga_ 93 LHELLAAELTKALKTKLDLSSLAYS 117 (119)
T ss_dssp HHHHHHHHHHHHHTSCCCCTTSTTS
T ss_pred HHHHHHHHHHHHhCCceEeeecccC
Confidence 5555555443 6899999988764
No 9
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.05 E-value=16 Score=18.09 Aligned_cols=15 Identities=40% Similarity=1.015 Sum_probs=11.0
Q ss_pred cCCCCC--ccCCCCCCC
Q psy14585 50 AGLGGP--VDFSGLPWP 64 (66)
Q Consensus 50 ~gLG~p--~Dfsdi~W~ 64 (66)
+|+|+. +-|+|-||-
T Consensus 9 tg~gg~kyisFE~R~WH 25 (29)
T d1x4la1 9 SGLGGTKYISFEERQWH 25 (29)
T ss_dssp CCSSSCSCEECSSCEEC
T ss_pred cccCCceEEEeeccccc
Confidence 466654 789999995
No 10
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.48 E-value=46 Score=17.58 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhcCC
Q psy14585 36 EAAMAVIMSLLEADAGL 52 (66)
Q Consensus 36 eaaMA~~MslLEAD~gL 52 (66)
|.+.++|+.||+. .++
T Consensus 10 Ee~~~~Fk~LL~e-~~i 25 (69)
T d2doda1 10 EARMKQFKDMLLE-RGV 25 (69)
T ss_dssp HHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHHHH-cCC
Confidence 7789999999986 444
Done!