RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14589
(655 letters)
>gnl|CDD|130335 TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydroxylase, tetrameric
form. This model describes the larger, tetrameric form
of phenylalanine-4-hydroxylase, as found in metazoans.
The enzyme irreversibly converts phenylalanine to
tryosine and is known to be the rate-limiting step in
phenylalanine catabolism in some systems. It is closely
related to metazoan tyrosine 3-monooxygenase and
tryptophan 5-monoxygenase, and more distantly to
monomeric phenylalanine-4-hydroxylases of some
Gram-negative bacteria. The member of this family from
Drosophila has been described as having both
phenylalanine-4-hydroxylase and tryptophan
5-monoxygenase activity (PMID:1371286). However, a
Drosophila member of the tryptophan 5-monoxygenase clade
has subsequently been discovered.
Length = 436
Score = 424 bits (1091), Expect = e-143
Identities = 194/321 (60%), Positives = 224/321 (69%), Gaps = 37/321 (11%)
Query: 264 VIFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECA--PGGDLSSVI 321
+IFS ++E GALA+TLKLF+ H+VNL HIESR S YEF VE L VI
Sbjct: 19 LIFS-LKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVI 77
Query: 322 ESLRSSC-SYINIISRNHNQ-FHGVPWFPRRIRELDRFANQILSYGSELDADHPGFTDPV 379
E LR +NI+SR++ Q VPWFPR+I ++DRFANQILSYG+ELDADHPGF DPV
Sbjct: 78 EHLRQKAEVTVNILSRDNKQNKDSVPWFPRKINDIDRFANQILSYGAELDADHPGFKDPV 137
Query: 380 YRARRKYFADLAFNYKH-----SILLMP-----------------------EHNHVFPLL 411
YRARRK FAD+AFNYKH + E+NH+FPLL
Sbjct: 138 YRARRKQFADIAFNYKHGQPIPRVEYTDEEIATWRTVFNNLTVLYPTHACQEYNHIFPLL 197
Query: 412 IQNCGYAEDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPS 471
QNCG+ EDNIPQLED+S+FL+D TGF+LRPVAGLLSSRDFLAGLAFRVFHSTQYIRH S
Sbjct: 198 QQNCGFREDNIPQLEDVSQFLQDCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHHS 257
Query: 472 KPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGAPDEYVERLATSNNFMIVPRL 531
KP+YTPEPD+CHELLGHVPLFAD FAQFSQEIGLASLGAPD+Y+E+LAT F I L
Sbjct: 258 KPMYTPEPDICHELLGHVPLFADVEFAQFSQEIGLASLGAPDDYIEKLATLYWFTIEFGL 317
Query: 532 ASLSPDSTGFSLRPVAGLLSS 552
+ + AGLLSS
Sbjct: 318 CKQDGEKKAYG----AGLLSS 334
Score = 227 bits (581), Expect = 1e-67
Identities = 89/112 (79%), Positives = 101/112 (90%)
Query: 1 GEPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDI 60
G+P+PRV+YT EE TW VF NLT LYPTHAC+E+NH+FPLL QNCG+ EDNIPQLED+
Sbjct: 155 GQPIPRVEYTDEEIATWRTVFNNLTVLYPTHACQEYNHIFPLLQQNCGFREDNIPQLEDV 214
Query: 61 SKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPD 112
S+FL+D TGF+LRPVAGLLSSRDFLAGLAFRVFHSTQYIRH SKP+YTPEPD
Sbjct: 215 SQFLQDCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHHSKPMYTPEPD 266
Score = 177 bits (450), Expect = 4e-49
Identities = 75/91 (82%), Positives = 81/91 (89%), Gaps = 3/91 (3%)
Query: 528 VPRLASLS---PDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDV 584
+P+L +S D TGF+LRPVAGLLSSRDFLAGLAFRVFHSTQYIRH SKP+YTPEPD+
Sbjct: 208 IPQLEDVSQFLQDCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHHSKPMYTPEPDI 267
Query: 585 CHELLGHVPLFADPSFAQFSQEIGLASLGAP 615
CHELLGHVPLFAD FAQFSQEIGLASLGAP
Sbjct: 268 CHELLGHVPLFADVEFAQFSQEIGLASLGAP 298
Score = 104 bits (262), Expect = 6e-24
Identities = 39/47 (82%), Positives = 43/47 (91%)
Query: 163 TIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH 209
I ++DRFANQILSYG+ELDADHPGF DPVYRARRK FAD+AFNYKH
Sbjct: 108 KINDIDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAFNYKH 154
>gnl|CDD|239463 cd03347, eu_PheOH, Eukaryotic phenylalanine-4-hydroxylase
(eu_PheOH); a member of the biopterin-dependent aromatic
amino acid hydroxylase family of non-heme,
iron(II)-dependent enzymes that also includes
prokaryotic phenylalanine-4-hydroxylase (pro_PheOH),
eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic
tryptophan hydroxylase (TrpOH). PheOH catalyzes the
first and rate-limiting step in the metabolism of the
amino acid L-phenylalanine (L-Phe), the hydroxylation of
L-Phe to L-tyrosine (L-Tyr). It uses
(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the
physiological electron donor. The catalytic activity of
the tetrameric enzyme is tightly regulated by the
binding of L-Phe and BH4 as well as by phosphorylation.
Mutations in the human enzyme are linked to a severe
variant of phenylketonuria.
Length = 306
Score = 345 bits (886), Expect = e-114
Identities = 150/205 (73%), Positives = 165/205 (80%), Gaps = 28/205 (13%)
Query: 345 PWFPRRIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKHS------- 397
PWFPR I++LDRFANQILSYG+ELDADHPGF DPVYRARRK FAD+A+NYKH
Sbjct: 1 PWFPRTIQDLDRFANQILSYGAELDADHPGFKDPVYRARRKEFADIAYNYKHGQPIPRVE 60
Query: 398 ----------------ILLMP-----EHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDST 436
L P E+NHVFPLL +NCG++EDNIPQLED+S FL+ T
Sbjct: 61 YTEEEKKTWGTVFRELKSLYPTHACYEYNHVFPLLEKNCGFSEDNIPQLEDVSNFLQTCT 120
Query: 437 GFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPS 496
GF LRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKP+YTPEPD+CHELLGHVPLFADPS
Sbjct: 121 GFRLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPMYTPEPDICHELLGHVPLFADPS 180
Query: 497 FAQFSQEIGLASLGAPDEYVERLAT 521
FAQFSQEIGLASLGAPDEY+E+LAT
Sbjct: 181 FAQFSQEIGLASLGAPDEYIEKLAT 205
Score = 228 bits (582), Expect = 2e-69
Identities = 90/112 (80%), Positives = 100/112 (89%)
Query: 1 GEPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDI 60
G+P+PRV+YT EE KTWG VFR L LYPTHAC E+NHVFPLL +NCG++EDNIPQLED+
Sbjct: 53 GQPIPRVEYTEEEKKTWGTVFRELKSLYPTHACYEYNHVFPLLEKNCGFSEDNIPQLEDV 112
Query: 61 SKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPD 112
S FL+ TGF LRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKP+YTPEPD
Sbjct: 113 SNFLQTCTGFRLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPMYTPEPD 164
Score = 178 bits (452), Expect = 1e-50
Identities = 77/91 (84%), Positives = 82/91 (90%), Gaps = 3/91 (3%)
Query: 528 VPRLASLS---PDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDV 584
+P+L +S TGF LRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKP+YTPEPD+
Sbjct: 106 IPQLEDVSNFLQTCTGFRLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPMYTPEPDI 165
Query: 585 CHELLGHVPLFADPSFAQFSQEIGLASLGAP 615
CHELLGHVPLFADPSFAQFSQEIGLASLGAP
Sbjct: 166 CHELLGHVPLFADPSFAQFSQEIGLASLGAP 196
Score = 98.7 bits (246), Expect = 1e-22
Identities = 40/47 (85%), Positives = 45/47 (95%)
Query: 163 TIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH 209
TI++LDRFANQILSYG+ELDADHPGF DPVYRARRK FAD+A+NYKH
Sbjct: 6 TIQDLDRFANQILSYGAELDADHPGFKDPVYRARRKEFADIAYNYKH 52
>gnl|CDD|201173 pfam00351, Biopterin_H, Biopterin-dependent aromatic amino acid
hydroxylase. This family includes
phenylalanine-4-hydroxylase, the phenylketonuria disease
protein.
Length = 306
Score = 320 bits (821), Expect = e-105
Identities = 140/205 (68%), Positives = 153/205 (74%), Gaps = 28/205 (13%)
Query: 345 PWFPRRIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH-------- 396
PWFPR+I ELDR AN +L YG ELDADHPGF DPVYR RRKYFAD+AFNYKH
Sbjct: 1 PWFPRKISELDRCANLVLKYGPELDADHPGFKDPVYRQRRKYFADIAFNYKHGDPIPHVE 60
Query: 397 -------------SIL--LMP-----EHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDST 436
L L P E+ H FPLL + CG+ EDNIPQLED+S FLK+ T
Sbjct: 61 YTEEEIKTWGTVFKTLKKLYPTHACREYLHAFPLLEKYCGFREDNIPQLEDVSNFLKERT 120
Query: 437 GFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPS 496
GFSLRPVAGLLS+RDFLAGLAFRVFH TQYIRH S P+YTPEPD CHELLGHVPL ADPS
Sbjct: 121 GFSLRPVAGLLSARDFLAGLAFRVFHCTQYIRHASSPMYTPEPDCCHELLGHVPLLADPS 180
Query: 497 FAQFSQEIGLASLGAPDEYVERLAT 521
FAQFSQEIGLASLGA DE +E+L+T
Sbjct: 181 FAQFSQEIGLASLGASDEEIEKLST 205
Score = 216 bits (553), Expect = 3e-65
Identities = 84/113 (74%), Positives = 96/113 (84%)
Query: 1 GEPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDI 60
G+P+P V+YT EE KTWG VF+ L KLYPTHAC+E+ H FPLL + CG+ EDNIPQLED+
Sbjct: 53 GDPIPHVEYTEEEIKTWGTVFKTLKKLYPTHACREYLHAFPLLEKYCGFREDNIPQLEDV 112
Query: 61 SKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDT 113
S FLK+ TGFSLRPVAGLLS+RDFLAGLAFRVFH TQYIRH S P+YTPEPD
Sbjct: 113 SNFLKERTGFSLRPVAGLLSARDFLAGLAFRVFHCTQYIRHASSPMYTPEPDC 165
Score = 168 bits (426), Expect = 4e-47
Identities = 72/91 (79%), Positives = 78/91 (85%), Gaps = 3/91 (3%)
Query: 528 VPRLASLS---PDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDV 584
+P+L +S + TGFSLRPVAGLLS+RDFLAGLAFRVFH TQYIRH S P+YTPEPD
Sbjct: 106 IPQLEDVSNFLKERTGFSLRPVAGLLSARDFLAGLAFRVFHCTQYIRHASSPMYTPEPDC 165
Query: 585 CHELLGHVPLFADPSFAQFSQEIGLASLGAP 615
CHELLGHVPL ADPSFAQFSQEIGLASLGA
Sbjct: 166 CHELLGHVPLLADPSFAQFSQEIGLASLGAS 196
Score = 92.2 bits (229), Expect = 2e-20
Identities = 37/47 (78%), Positives = 39/47 (82%)
Query: 163 TIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH 209
I ELDR AN +L YG ELDADHPGF DPVYR RRKYFAD+AFNYKH
Sbjct: 6 KISELDRCANLVLKYGPELDADHPGFKDPVYRQRRKYFADIAFNYKH 52
>gnl|CDD|130337 TIGR01270, Trp_5_monoox, tryptophan 5-monooxygenase, tetrameric.
This model describes tryptophan 5-monooxygenase, a
member of the family of tetrameric, biopterin-dependent
aromatic amino acid hydroxylases found in metazoans. It
is closely related to tetrameric
phenylalanine-4-hydroxylase and tyrosine
3-monooxygenase, and more distantly related to the
monomeric phenylalanine-4-hydroxylase found in some
Gram-negative bacteria [Energy metabolism, Amino acids
and amines].
Length = 464
Score = 321 bits (825), Expect = e-103
Identities = 157/334 (47%), Positives = 194/334 (58%), Gaps = 50/334 (14%)
Query: 264 VIFSNHQDEVGALAKTLKLFKKHNVNLLHIESR-SSTRIENNYEFMVEC-APGGDLSSVI 321
+IFS + VG L+K + +F+ ++N+LH+ESR S + +V+ L +
Sbjct: 34 IIFSL-SNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAM 92
Query: 322 ESLRSSCSYINIISRNH--------------NQFHGVPWFPRRIRELDRFANQILSYGSE 367
+ L+S + S + GVPWFP++I +LD+ AN++L YGSE
Sbjct: 93 DLLKSGLDVHEVSSPIRPTLIEAQYTEPGSDDATTGVPWFPKKISDLDKCANRVLMYGSE 152
Query: 368 LDADHPGFTDPVYRARRKYFADLAFNYKH------------------SILL--------- 400
LDADHPGF D YR RR FADLA NYKH +I
Sbjct: 153 LDADHPGFKDTEYRKRRMMFADLALNYKHGEPIPRVEYTEEERKTWGTIYRELRRLYKTH 212
Query: 401 -MPEHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFR 459
E PLL + CGY EDNIPQLED+SKFLK TGF LRPVAG LS+RDFL+GLAFR
Sbjct: 213 ACKEFLDNLPLLEKYCGYREDNIPQLEDVSKFLKAKTGFRLRPVAGYLSARDFLSGLAFR 272
Query: 460 VFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGAPDEYVERL 519
VFH TQY+RH + P YTPEPD CHELLGH+PL ADPSFAQFSQEIGLASLGA +E +++L
Sbjct: 273 VFHCTQYVRHSADPFYTPEPDTCHELLGHMPLLADPSFAQFSQEIGLASLGASEEDIKKL 332
Query: 520 ATSNNFMIVPRLASLSPDSTGFSLRPV-AGLLSS 552
AT F I L D + AGLLSS
Sbjct: 333 ATLYFFTIEFGLCK-QDDEQ---FKVYGAGLLSS 362
Score = 196 bits (500), Expect = 7e-56
Identities = 80/113 (70%), Positives = 91/113 (80%)
Query: 1 GEPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDI 60
GEP+PRV+YT EE KTWG ++R L +LY THACKE PLL + CGY EDNIPQLED+
Sbjct: 182 GEPIPRVEYTEEERKTWGTIYRELRRLYKTHACKEFLDNLPLLEKYCGYREDNIPQLEDV 241
Query: 61 SKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDT 113
SKFLK TGF LRPVAG LS+RDFL+GLAFRVFH TQY+RH + P YTPEPDT
Sbjct: 242 SKFLKAKTGFRLRPVAGYLSARDFLSGLAFRVFHCTQYVRHSADPFYTPEPDT 294
Score = 160 bits (407), Expect = 7e-43
Identities = 66/90 (73%), Positives = 74/90 (82%), Gaps = 3/90 (3%)
Query: 528 VPRLASLS---PDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDV 584
+P+L +S TGF LRPVAG LS+RDFL+GLAFRVFH TQY+RH + P YTPEPD
Sbjct: 235 IPQLEDVSKFLKAKTGFRLRPVAGYLSARDFLSGLAFRVFHCTQYVRHSADPFYTPEPDT 294
Query: 585 CHELLGHVPLFADPSFAQFSQEIGLASLGA 614
CHELLGH+PL ADPSFAQFSQEIGLASLGA
Sbjct: 295 CHELLGHMPLLADPSFAQFSQEIGLASLGA 324
Score = 82.6 bits (204), Expect = 1e-16
Identities = 32/46 (69%), Positives = 36/46 (78%)
Query: 164 IRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH 209
I +LD+ AN++L YGSELDADHPGF D YR RR FADLA NYKH
Sbjct: 136 ISDLDKCANRVLMYGSELDADHPGFKDTEYRKRRMMFADLALNYKH 181
>gnl|CDD|239462 cd03346, eu_TrpOH, Eukaryotic tryptophan hydroxylase (TrpOH); a
member of the biopterin-dependent aromatic amino acid
hydroxylase family of non-heme, iron(II)-dependent
enzymes that also includes prokaryotic and eukaryotic
phenylalanine-4-hydroxylase (PheOH) and eukaryotic
tyrosine hydroxylase (TyrOH). TrpOH oxidizes
L-tryptophan to 5-hydroxy-L-tryptophan, the
rate-limiting step in the biosynthesis of serotonin
(5-hydroxytryptamine), a widely distributed hormone and
neurotransmitter.
Length = 287
Score = 292 bits (749), Expect = 2e-94
Identities = 136/236 (57%), Positives = 158/236 (66%), Gaps = 32/236 (13%)
Query: 345 PWFPRRIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKHSILL---- 400
PWFP++I +LD+ AN++L YGSELDADHPGF D VYR RRKYFAD+A NYKH +
Sbjct: 1 PWFPKKISDLDKCANRVLMYGSELDADHPGFKDNVYRKRRKYFADVAMNYKHGDPIPRVE 60
Query: 401 ------------------------MPEHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDST 436
E+ PLL ++CGY EDNIPQLED+S+FLK+ T
Sbjct: 61 YTEEEIKTWGTVYRELNRLYPTHACREYLKNLPLLEKHCGYREDNIPQLEDVSRFLKERT 120
Query: 437 GFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPS 496
GF++RPVAG LS RDFLAGLAFRVFH TQY+RH S P YTPEPD CHELLGHVPL ADPS
Sbjct: 121 GFTIRPVAGYLSPRDFLAGLAFRVFHCTQYVRHSSDPFYTPEPDTCHELLGHVPLLADPS 180
Query: 497 FAQFSQEIGLASLGAPDEYVERLATSNNFMIVPRLASLSPDSTGFSLRPVAGLLSS 552
FAQFSQEIGLASLGA DE +++LAT F + L + AGLLSS
Sbjct: 181 FAQFSQEIGLASLGASDEDIQKLATCYFFTVEFGLCKQDGQLKVYG----AGLLSS 232
Score = 201 bits (512), Expect = 1e-59
Identities = 80/113 (70%), Positives = 95/113 (84%)
Query: 1 GEPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDI 60
G+P+PRV+YT EE KTWG V+R L +LYPTHAC+E+ PLL ++CGY EDNIPQLED+
Sbjct: 53 GDPIPRVEYTEEEIKTWGTVYRELNRLYPTHACREYLKNLPLLEKHCGYREDNIPQLEDV 112
Query: 61 SKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDT 113
S+FLK+ TGF++RPVAG LS RDFLAGLAFRVFH TQY+RH S P YTPEPDT
Sbjct: 113 SRFLKERTGFTIRPVAGYLSPRDFLAGLAFRVFHCTQYVRHSSDPFYTPEPDT 165
Score = 161 bits (408), Expect = 8e-45
Identities = 68/90 (75%), Positives = 75/90 (83%), Gaps = 3/90 (3%)
Query: 528 VPRLASLS---PDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDV 584
+P+L +S + TGF++RPVAG LS RDFLAGLAFRVFH TQY+RH S P YTPEPD
Sbjct: 106 IPQLEDVSRFLKERTGFTIRPVAGYLSPRDFLAGLAFRVFHCTQYVRHSSDPFYTPEPDT 165
Query: 585 CHELLGHVPLFADPSFAQFSQEIGLASLGA 614
CHELLGHVPL ADPSFAQFSQEIGLASLGA
Sbjct: 166 CHELLGHVPLLADPSFAQFSQEIGLASLGA 195
Score = 81.8 bits (202), Expect = 4e-17
Identities = 34/46 (73%), Positives = 39/46 (84%)
Query: 164 IRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH 209
I +LD+ AN++L YGSELDADHPGF D VYR RRKYFAD+A NYKH
Sbjct: 7 ISDLDKCANRVLMYGSELDADHPGFKDNVYRKRRKYFADVAMNYKH 52
>gnl|CDD|130336 TIGR01269, Tyr_3_monoox, tyrosine 3-monooxygenase, tetrameric.
This model describes tyrosine 3-monooxygenase, a member
of the family of tetrameric, biopterin-dependent
aromatic amino acid hydroxylases found in metazoans. It
is closely related to tetrameric
phenylalanine-4-hydroxylase and tryptophan
5-monooxygenase, and more distantly related to the
monomeric phenylalanine-4-hydroxylase found in some
Gram-negative bacteria.
Length = 457
Score = 268 bits (687), Expect = 5e-83
Identities = 125/282 (44%), Positives = 168/282 (59%), Gaps = 33/282 (11%)
Query: 272 EVGALAKTLKLFKKHNVNLLHIESRSSTRIEN---NYEFMVEC-APGGDLSSVIESLRSS 327
E+ +L + LK + +NL+H E+R + + N +Y ++ A ++S +IESLR +
Sbjct: 48 EISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANEINMSLLIESLRGN 107
Query: 328 CSYINIISRNHNQFHGVPWFPRRIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYF 387
I N NQ WFP+ I ELD+ + + + +LD DHPGF D VYR RR+
Sbjct: 108 SFISGINLLN-NQNVKEDWFPKHISELDKCQHLLTKFQPDLDTDHPGFHDKVYRQRREAI 166
Query: 388 ADLAFNYKHSILL----------------------------MPEHNHVFPLLIQNCGYAE 419
A++AF YK+ + E+ F LL + C Y
Sbjct: 167 AEIAFQYKYGDPIPEVEYTKEEIETWRLVFTTMKDLHASHACREYIDAFQLLEKYCNYNS 226
Query: 420 DNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEP 479
++IPQL+ IS+FL +TGF LRPVAGLLS+RDFLA LAFRVF TQYIRH S P++TPEP
Sbjct: 227 ESIPQLQTISEFLHRTTGFRLRPVAGLLSARDFLASLAFRVFQCTQYIRHHSSPMHTPEP 286
Query: 480 DVCHELLGHVPLFADPSFAQFSQEIGLASLGAPDEYVERLAT 521
D HELLGH+P+ AD FAQFSQEIGLASLGA +E +E+L+T
Sbjct: 287 DCIHELLGHMPMLADRQFAQFSQEIGLASLGASEEEIEKLST 328
Score = 174 bits (442), Expect = 8e-48
Identities = 66/114 (57%), Positives = 85/114 (74%)
Query: 1 GEPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDI 60
G+P+P V+YT EE +TW VF + L+ +HAC+E+ F LL + C Y ++IPQL+ I
Sbjct: 176 GDPIPEVEYTKEEIETWRLVFTTMKDLHASHACREYIDAFQLLEKYCNYNSESIPQLQTI 235
Query: 61 SKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDTL 114
S+FL +TGF LRPVAGLLS+RDFLA LAFRVF TQYIRH S P++TPEPD +
Sbjct: 236 SEFLHRTTGFRLRPVAGLLSARDFLASLAFRVFQCTQYIRHHSSPMHTPEPDCI 289
Score = 145 bits (368), Expect = 9e-38
Identities = 63/90 (70%), Positives = 73/90 (81%), Gaps = 3/90 (3%)
Query: 528 VPRLASLSP---DSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDV 584
+P+L ++S +TGF LRPVAGLLS+RDFLA LAFRVF TQYIRH S P++TPEPD
Sbjct: 229 IPQLQTISEFLHRTTGFRLRPVAGLLSARDFLASLAFRVFQCTQYIRHHSSPMHTPEPDC 288
Query: 585 CHELLGHVPLFADPSFAQFSQEIGLASLGA 614
HELLGH+P+ AD FAQFSQEIGLASLGA
Sbjct: 289 IHELLGHMPMLADRQFAQFSQEIGLASLGA 318
Score = 59.2 bits (143), Expect = 3e-09
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 164 IRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH 209
I ELD+ + + + +LD DHPGF D VYR RR+ A++AF YK+
Sbjct: 130 ISELDKCQHLLTKFQPDLDTDHPGFHDKVYRQRREAIAEIAFQYKY 175
>gnl|CDD|239461 cd03345, eu_TyrOH, Eukaryotic tyrosine hydroxylase (TyrOH); a
member of the biopterin-dependent aromatic amino acid
hydroxylase family of non-heme, iron(II)-dependent
enzymes that also includes prokaryotic and eukaryotic
phenylalanine-4-hydroxylase (PheOH) and eukaryotic
tryptophan hydroxylase (TrpOH). TyrOH catalyzes the
conversion of tyrosine to L-dihydroxyphenylalanine
(L-DOPA), the rate-limiting step in the biosynthesis of
the catecholamines dopamine, noradrenaline, and
adrenaline.
Length = 298
Score = 260 bits (667), Expect = 4e-82
Identities = 116/204 (56%), Positives = 139/204 (68%), Gaps = 28/204 (13%)
Query: 346 WFPRRIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH--------- 396
WFPR I ELD+ + + Y +LD DHPGF+D VYR RRK A++AF YKH
Sbjct: 1 WFPRHISELDKCHHLVTKYEPDLDLDHPGFSDKVYRERRKLIAEIAFQYKHGDPIPRVEY 60
Query: 397 ------------SIL--LMP-----EHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDSTG 437
L L E+ F LL + CGY+ED IPQLED+S+FLK+ TG
Sbjct: 61 TAEEIATWKEVYKTLKDLHATHACKEYLDAFQLLEKECGYSEDRIPQLEDVSEFLKERTG 120
Query: 438 FSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSF 497
F LRPVAGLLS+RDFLA LAFRVF TQYIRH S P+++PEPD CHELLGHVP+ ADP+F
Sbjct: 121 FQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDCCHELLGHVPMLADPTF 180
Query: 498 AQFSQEIGLASLGAPDEYVERLAT 521
AQFSQ+IGLASLGA DE +E+L+T
Sbjct: 181 AQFSQDIGLASLGASDEEIEKLST 204
Score = 188 bits (479), Expect = 1e-54
Identities = 75/112 (66%), Positives = 91/112 (81%)
Query: 1 GEPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDI 60
G+P+PRV+YTAEE TW EV++ L L+ THACKE+ F LL + CGY+ED IPQLED+
Sbjct: 52 GDPIPRVEYTAEEIATWKEVYKTLKDLHATHACKEYLDAFQLLEKECGYSEDRIPQLEDV 111
Query: 61 SKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPD 112
S+FLK+ TGF LRPVAGLLS+RDFLA LAFRVF TQYIRH S P+++PEPD
Sbjct: 112 SEFLKERTGFQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPD 163
Score = 154 bits (391), Expect = 3e-42
Identities = 61/76 (80%), Positives = 68/76 (89%)
Query: 539 TGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADP 598
TGF LRPVAGLLS+RDFLA LAFRVF TQYIRH S P+++PEPD CHELLGHVP+ ADP
Sbjct: 119 TGFQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDCCHELLGHVPMLADP 178
Query: 599 SFAQFSQEIGLASLGA 614
+FAQFSQ+IGLASLGA
Sbjct: 179 TFAQFSQDIGLASLGA 194
Score = 63.6 bits (155), Expect = 6e-11
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 164 IRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH 209
I ELD+ + + Y +LD DHPGF+D VYR RRK A++AF YKH
Sbjct: 6 ISELDKCHHLVTKYEPDLDLDHPGFSDKVYRERRKLIAEIAFQYKH 51
>gnl|CDD|238215 cd00361, arom_aa_hydroxylase, Biopterin-dependent aromatic amino
acid hydroxylase; a family of non-heme,
iron(II)-dependent enzymes that includes prokaryotic and
eukaryotic phenylalanine-4-hydroxylase (PheOH),
eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic
tryptophan hydroxylase (TrpOH). PheOH converts
L-phenylalanine to L-tyrosine, an important step in
phenylalanine catabolism and neurotransmitter
biosynthesis, and is linked to a severe variant of
phenylketonuria in humans. TyrOH and TrpOH are involved
in the biosynthesis of catecholamine and serotonin,
respectively. The eukaryotic enzymes are all
homotetramers.
Length = 221
Score = 191 bits (489), Expect = 4e-57
Identities = 79/121 (65%), Positives = 89/121 (73%), Gaps = 5/121 (4%)
Query: 402 PEHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVF 461
E+ LL G ED IPQLED+S+FLK TG++L PVAGL+S RDF A LAFRVF
Sbjct: 30 REYLEGLELL----GLPEDRIPQLEDVSEFLKALTGWTLVPVAGLISPRDFFALLAFRVF 85
Query: 462 HSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGAPD-EYVERLA 520
TQYIRHP +P YTPEPD+ HEL GHVPL ADPSFA FSQE GLASLGA D E +E+LA
Sbjct: 86 PVTQYIRHPEEPDYTPEPDIFHELFGHVPLLADPSFADFSQEYGLASLGASDLEEIEKLA 145
Query: 521 T 521
Sbjct: 146 R 146
Score = 173 bits (440), Expect = 4e-50
Identities = 68/109 (62%), Positives = 78/109 (71%), Gaps = 4/109 (3%)
Query: 5 PRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDISKFL 64
PRVDYT EE TW ++R L KL PTHAC+E+ LL G ED IPQLED+S+FL
Sbjct: 1 PRVDYTEEEHATWRTLYRRLKKLLPTHACREYLEGLELL----GLPEDRIPQLEDVSEFL 56
Query: 65 KDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDT 113
K TG++L PVAGL+S RDF A LAFRVF TQYIRHP +P YTPEPD
Sbjct: 57 KALTGWTLVPVAGLISPRDFFALLAFRVFPVTQYIRHPEEPDYTPEPDI 105
Score = 155 bits (393), Expect = 2e-43
Identities = 70/135 (51%), Positives = 85/135 (62%), Gaps = 14/135 (10%)
Query: 481 VCHELLGHVPLFADPSFAQFSQEIGLASLGAPDEYVERLATSNNFMIVPRLASLSPDSTG 540
+ L +P A + + GL LG P++ + +L + F L +L TG
Sbjct: 16 LYRRLKKLLPTHACREYLE-----GLELLGLPEDRIPQLEDVSEF-----LKAL----TG 61
Query: 541 FSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSF 600
++L PVAGL+S RDF A LAFRVF TQYIRHP +P YTPEPD+ HEL GHVPL ADPSF
Sbjct: 62 WTLVPVAGLISPRDFFALLAFRVFPVTQYIRHPEEPDYTPEPDIFHELFGHVPLLADPSF 121
Query: 601 AQFSQEIGLASLGAP 615
A FSQE GLASLGA
Sbjct: 122 ADFSQEYGLASLGAS 136
>gnl|CDD|237020 PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed.
Length = 275
Score = 113 bits (286), Expect = 4e-28
Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 416 GYAEDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLY 475
G +D IPQL++I++ L+ +TG+ + PV GL+ F LA R F +IR P + Y
Sbjct: 62 GLPKDRIPQLDEINRVLQAATGWQVVPVPGLIPFDVFFELLANRRFPVATFIRRPEELDY 121
Query: 476 TPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGAPDEY-VERLA 520
EPD+ H++ GHVPL +P FA F Q G L A E +E LA
Sbjct: 122 LQEPDIFHDVFGHVPLLTNPVFADFMQAYGKLGLRASKEGRLEFLA 167
Score = 105 bits (264), Expect = 3e-25
Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 3 PLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDISK 62
P +DYTAEE W ++ L P AC E L G +D IPQL++I++
Sbjct: 21 DQPWIDYTAEEHAIWQTLYERQLALLPGRACDEFLEGLEAL----GLPKDRIPQLDEINR 76
Query: 63 FLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPD 112
L+ +TG+ + PV GL+ F LA R F +IR P + Y EPD
Sbjct: 77 VLQAATGWQVVPVPGLIPFDVFFELLANRRFPVATFIRRPEELDYLQEPD 126
Score = 97.2 bits (243), Expect = 2e-22
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 505 GLASLGAPDEYVERLATSNNFMIVPRLASLSPDSTGFSLRPVAGLLSSRDFLAGLAFRVF 564
GL +LG P + + +L N L + TG+ + PV GL+ F LA R F
Sbjct: 57 GLEALGLPKDRIPQLDEINR-----VLQAA----TGWQVVPVPGLIPFDVFFELLANRRF 107
Query: 565 HSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGA 614
+IR P + Y EPD+ H++ GHVPL +P FA F Q G L A
Sbjct: 108 PVATFIRRPEELDYLQEPDIFHDVFGHVPLLTNPVFADFMQAYGKLGLRA 157
>gnl|CDD|153176 cd04904, ACT_AAAH, ACT domain of the nonheme iron-dependent,
aromatic amino acid hydroxylases (AAAH). ACT domain of
the nonheme iron-dependent, aromatic amino acid
hydroxylases (AAAH): Phenylalanine hydroxylases (PAH),
tyrosine hydroxylases (TH) and tryptophan hydroxylases
(TPH), both peripheral (TPH1) and neuronal (TPH2)
enzymes. This family of enzymes shares a common
catalytic mechanism, in which dioxygen is used by an
active site containing a single, reduced iron atom to
hydroxylate an unactivated aromatic substrate,
concomitant with a two-electron oxidation of
tetrahydropterin (BH4) cofactor to its quinonoid
dihydropterin form. PAH catalyzes the hydroxylation of
L-Phe to L-Tyr, the first step in the catabolic
degradation of L-Phe; TH catalyses the hydroxylation of
L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting
step in the biosynthesis of catecholamines; and TPH
catalyses the hydroxylation of L-Trp to
5-hydroxytryptophan, the rate limiting step in the
biosynthesis of 5-hydroxytryptamine (serotonin) and the
first reaction in the synthesis of melatonin. Eukaryotic
AAAHs have an N-terminal ACT (regulatory) domain, a
middle catalytic domain and a C-terminal domain which is
responsible for the oligomeric state of the enzyme
forming a domain-swapped tetrameric coiled-coil. The
PAH, TH, and TPH enzymes contain highly conserved
catalytic domains but distinct N-terminal ACT domains
(this CD) and differ in their mechanisms of regulation.
One commonality is that all three eukaryotic enzymes are
regulated in part by the phosphorylation of serine
residues N-terminal of the ACT domain. Members of this
CD belong to the superfamily of ACT regulatory domains.
Length = 74
Score = 93.4 bits (233), Expect = 3e-23
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 264 VIFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAPG-GDLSSVIE 322
+IFS ++EVGALA+ LKLF++ VNL HIESR S R + YEF V+C GDL +I
Sbjct: 3 LIFS-LKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLIS 61
Query: 323 SLRSSCSYINIIS 335
SLR + +NI+S
Sbjct: 62 SLRRVVADVNILS 74
>gnl|CDD|239464 cd03348, pro_PheOH, Prokaryotic phenylalanine-4-hydroxylase
(pro_PheOH); a member of the biopterin-dependent
aromatic amino acid hydroxylase family of non-heme,
iron(II)-dependent enzymes that also includes the
eukaryotic proteins, phenylalanine-4-hydroxylase
(eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan
hydroxylase (TrpOH). PheOH catalyzes the hydroxylation
of L-Phe to L-tyrosine (L-Tyr). It uses
(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the
physiological electron donor.
Length = 228
Score = 93.1 bits (232), Expect = 2e-21
Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 419 EDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPE 478
D IP D+S+ LK +TG+++ V GL+ +F LA R F T +IR P + Y E
Sbjct: 49 TDRIPDFADVSERLKAATGWTVVAVPGLIPDDEFFEHLANRRFPVTNFIRRPEELDYLQE 108
Query: 479 PDVCHELLGHVPLFADPSFAQFSQEIGLASLGAP----DEYVERL 519
PD+ H++ GHVP+ +P FA F Q G L A + RL
Sbjct: 109 PDIFHDIFGHVPMLTNPVFADFMQAYGKGGLKATGLEDRALLARL 153
Score = 80.4 bits (199), Expect = 4e-17
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 511 APDEYVERLATSNNFMI-VPRLASLSP---DSTGFSLRPVAGLLSSRDFLAGLAFRVFHS 566
A D ++E L +P A +S +TG+++ V GL+ +F LA R F
Sbjct: 34 ACDAFLEGLEKLGLPTDRIPDFADVSERLKAATGWTVVAVPGLIPDDEFFEHLANRRFPV 93
Query: 567 TQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGAP 615
T +IR P + Y EPD+ H++ GHVP+ +P FA F Q G L A
Sbjct: 94 TNFIRRPEELDYLQEPDIFHDIFGHVPMLTNPVFADFMQAYGKGGLKAT 142
Score = 79.6 bits (197), Expect = 8e-17
Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 7 VDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDISKFLKD 66
+DYT EE W ++ KL P AC L G D IP D+S+ LK
Sbjct: 9 IDYTPEEHAVWRTLYERQAKLLPGRACDAFLEGLEKL----GLPTDRIPDFADVSERLKA 64
Query: 67 STGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDT 113
+TG+++ V GL+ +F LA R F T +IR P + Y EPD
Sbjct: 65 ATGWTVVAVPGLIPDDEFFEHLANRRFPVTNFIRRPEELDYLQEPDI 111
>gnl|CDD|225727 COG3186, COG3186, Phenylalanine-4-hydroxylase [Amino acid transport
and metabolism].
Length = 291
Score = 82.9 bits (205), Expect = 2e-17
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 416 GYAEDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLY 475
G IP ++I++ L+ TG+ + V GL+ F LA R F ++R P + Y
Sbjct: 77 GLPLSRIPDFDEINRVLQRETGWQVVAVPGLVPFDVFFDLLANRRFPVATFMRTPDELDY 136
Query: 476 TPEPDVCHELLGHVPLFADPSFAQFSQEIG 505
EPD+ H++ GHVP+ P FA F Q G
Sbjct: 137 LQEPDIFHDVFGHVPMLTHPVFADFMQAYG 166
Score = 67.1 bits (164), Expect = 4e-12
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 539 TGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADP 598
TG+ + V GL+ F LA R F ++R P + Y EPD+ H++ GHVP+ P
Sbjct: 97 TGWQVVAVPGLVPFDVFFDLLANRRFPVATFMRTPDELDYLQEPDIFHDVFGHVPMLTHP 156
Query: 599 SFAQFSQEIG 608
FA F Q G
Sbjct: 157 VFADFMQAYG 166
Score = 65.6 bits (160), Expect = 1e-11
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 7 VDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDISKFLKD 66
+DY E W + TKL AC+E F ++ G IP ++I++ L+
Sbjct: 40 IDYPQAEHAVWRTLIDRQTKLLKGRACQE----FLDGLEALGLPLSRIPDFDEINRVLQR 95
Query: 67 STGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPD 112
TG+ + V GL+ F LA R F ++R P + Y EPD
Sbjct: 96 ETGWQVVAVPGLVPFDVFFDLLANRRFPVATFMRTPDELDYLQEPD 141
>gnl|CDD|130334 TIGR01267, Phe4hydrox_mono, phenylalanine-4-hydroxylase, monomeric
form. This model describes the smaller, monomeric form
of phenylalanine-4-hydroxylase, as found in a small
number of Gram-negative bacteria. The enzyme
irreversibly converts phenylalanine to tryosine and is
known to be the rate-limiting step in phenylalanine
catabolism in some systems. This family is of biopterin
and metal-dependent hydroxylases is related to a family
of longer, multimeric aromatic amino acid hydroxylases
that have additional N-terminal regulatory sequences.
These include tyrosine 3-monooxygenase,
phenylalanine-4-hydroxylase, and tryptophan
5-monoxygenase [Energy metabolism, Amino acids and
amines].
Length = 248
Score = 74.1 bits (182), Expect = 8e-15
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 412 IQNCGYAEDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPS 471
I+ G D IP ++I++ L+ +TG+ + V GL+ + F LA R F T ++R P
Sbjct: 42 IEQLGLPHDRIPDFDEINRKLQATTGWRIAAVPGLIPFQTFFEHLANRRFPVTTWLRTPE 101
Query: 472 KPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGAP----DEYVERL 519
+ Y EPD+ H++ GHVPL +P FA F+ G L A E + RL
Sbjct: 102 ELDYLQEPDIFHDIFGHVPLLTNPVFADFTHTYGKLGLKASALGRVEMLARL 153
Score = 59.1 bits (143), Expect = 1e-09
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 3 PLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDISK 62
Y+ EE W + KL AC+E + I+ G D IP ++I++
Sbjct: 5 DQGFDHYSEEEHAVWNTLITRQLKLIEGRACQE----YLDGIEQLGLPHDRIPDFDEINR 60
Query: 63 FLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPD 112
L+ +TG+ + V GL+ + F LA R F T ++R P + Y EPD
Sbjct: 61 KLQATTGWRIAAVPGLIPFQTFFEHLANRRFPVTTWLRTPEELDYLQEPD 110
Score = 58.0 bits (140), Expect = 2e-09
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 539 TGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADP 598
TG+ + V GL+ + F LA R F T ++R P + Y EPD+ H++ GHVPL +P
Sbjct: 66 TGWRIAAVPGLIPFQTFFEHLANRRFPVTTWLRTPEELDYLQEPDIFHDIFGHVPLLTNP 125
Query: 599 SFAQFSQEIG 608
FA F+ G
Sbjct: 126 VFADFTHTYG 135
>gnl|CDD|153152 cd04880, ACT_AAAH-PDT-like, ACT domain of the nonheme
iron-dependent, aromatic amino acid hydroxylases (AAAH).
ACT domain of the nonheme iron-dependent, aromatic
amino acid hydroxylases (AAAH): Phenylalanine
hydroxylases (PAH), tyrosine hydroxylases (TH) and
tryptophan hydroxylases (TPH), both peripheral (TPH1)
and neuronal (TPH2) enzymes. This family of enzymes
shares a common catalytic mechanism, in which dioxygen
is used by an active site containing a single, reduced
iron atom to hydroxylate an unactivated aromatic
substrate, concomitant with a two-electron oxidation of
tetrahydropterin (BH4) cofactor to its quinonoid
dihydropterin form. Eukaryotic AAAHs have an N-terminal
ACT (regulatory) domain, a middle catalytic domain and a
C-terminal domain which is responsible for the
oligomeric state of the enzyme forming a domain-swapped
tetrameric coiled-coil. The PAH, TH, and TPH enzymes
contain highly conserved catalytic domains but distinct
N-terminal ACT domains and differ in their mechanisms of
regulation. One commonality is that all three eukaryotic
enzymes appear to be regulated, in part, by the
phosphorylation of serine residues N-terminal of the ACT
domain. Also included in this CD are the C-terminal ACT
domains of the bifunctional chorismate mutase-prephenate
dehydratase (CM-PDT) enzyme and the prephenate
dehydratase (PDT) enzyme found in plants, fungi,
bacteria, and archaea. The P-protein of Escherichia coli
(CM-PDT) catalyzes the conversion of chorismate to
prephenate and then the decarboxylation and dehydration
to form phenylpyruvate. These are the first two steps in
the biosynthesis of L-Phe and L-Tyr via the shikimate
pathway in microorganisms and plants. The E. coli
P-protein (CM-PDT) has three domains with an N-terminal
domain with chorismate mutase activity, a middle domain
with prephenate dehydratase activity, and an ACT
regulatory C-terminal domain. The prephenate dehydratase
enzyme has a PDT and ACT domain. The ACT domain is
essential to bring about the negative allosteric
regulation by L-Phe binding. L-Phe binds with positive
cooperativity; with this binding, there is a shift in
the protein to less active tetrameric and higher
oligomeric forms from a more active dimeric form.
Members of this CD belong to the superfamily of ACT
regulatory domains.
Length = 75
Score = 67.1 bits (165), Expect = 4e-14
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 264 VIFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVEC---APGGDLSSV 320
++FS ++ GALAK LK+F + +NL IESR S + YEF V+ D+
Sbjct: 2 LVFSLK-NKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEA 60
Query: 321 IESLRSSCSYINII 334
+E L+ + ++
Sbjct: 61 LEELKRVTEDVKVL 74
>gnl|CDD|153203 cd04931, ACT_PAH, ACT domain of the nonheme iron-dependent aromatic
amino acid hydroxylase, phenylalanine hydroxylases
(PAH). ACT domain of the nonheme iron-dependent
aromatic amino acid hydroxylase, phenylalanine
hydroxylases (PAH). PAH catalyzes the hydroxylation of
L-Phe to L-Tyr, the first step in the catabolic
degradation of L-Phe. In PAH, an autoregulatory
sequence, N-terminal of the ACT domain, extends across
the catalytic domain active site and regulates the
enzyme by intrasteric regulation. It appears that the
activation by L-Phe induces a conformational change that
converts the enzyme to a high-affinity and high-activity
state. Modulation of activity is achieved through
inhibition by BH4 and activation by phosphorylation of
serine residues of the autoregulatory region. The
molecular basis for the cooperative activation process
is not fully understood yet. Members of this CD belong
to the superfamily of ACT regulatory domains.
Length = 90
Score = 64.4 bits (157), Expect = 7e-13
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 264 VIFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAPGGD--LSSVI 321
+IFS ++EVGALAK L+LF++ ++NL HIESR S ++ YEF + L +I
Sbjct: 17 LIFS-LKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPII 75
Query: 322 ESLRSS 327
+SLR+
Sbjct: 76 KSLRND 81
>gnl|CDD|153201 cd04929, ACT_TPH, ACT domain of the nonheme iron-dependent aromatic
amino acid hydroxylase, tryptophan hydroxylases (TPH),
both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT
domain of the nonheme iron-dependent aromatic amino acid
hydroxylase, tryptophan hydroxylases (TPH), both
peripheral (TPH1) and neuronal (TPH2) enzymes. TPH
catalyses the hydroxylation of L-Trp to
5-hydroxytryptophan, the rate limiting step in the
biosynthesis of 5-hydroxytryptamine (serotonin) and the
first reaction in the synthesis of melatonin. Very
little is known about the role of the ACT domain in TPH,
which appears to be regulated by phosphorylation but not
by its substrate or cofactor. Members of this CD belong
to the superfamily of ACT regulatory domains.
Length = 74
Score = 61.2 bits (149), Expect = 6e-12
Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 264 VIFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVEC 311
VIFS ++EVG LAK LKLF++ +N++HIESR S R + +E V+C
Sbjct: 3 VIFS-LKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49
>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family.
This group contains proteins related to the
zinc-dependent alcohol dehydrogenases. However, while
the group has structural zinc site characteristic of
these enzymes, it lacks the consensus site for a
catalytic zinc. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site, and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the cleft
between the catalytic and coenzyme-binding domains at
the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 342
Score = 64.6 bits (158), Expect = 4e-11
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
+T+ + GA G G AAIQ+ K +G TV A+ G + +A LGADYV+D+
Sbjct: 168 ETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYR 219
>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent
quinone reductase activity (QOR). Zeta-crystallin is a
eye lens protein with NADP-dependent quinone reductase
activity (QOR). It has been cited as a structural
component in mammalian eyes, but also has homology to
quinone reductases in unrelated species. QOR catalyzes
the conversion of a quinone and NAD(P)H to a
hydroquinone and NAD(P+. Quinones are cyclic diones
derived from aromatic compounds. Membrane bound QOR acts
in the respiratory chains of bacteria and mitochondria,
while soluble QOR acts to protect from toxic quinones
(e.g. DT-diaphorase) or as a soluble eye-lens protein in
some vertebrates (e.g. zeta-crystalin). QOR reduces
quinones through a semi-quinone intermediate via a
NAD(P)H-dependent single electron transfer. QOR is a
member of the medium chain dehydrogenase/reductase
family, but lacks the zinc-binding sites of the
prototypical alcohol dehydrogenases of this group.
Alcohol dehydrogenase in the liver converts ethanol and
NAD+ to acetaldehyde and NADH, while in yeast and some
other microorganisms ADH catalyzes the conversion
acetaldehyde to ethanol in alcoholic fermentation. ADH
is a member of the medium chain alcohol dehydrogenase
family (MDR), which has a NAD(P)(H)-binding domain in a
Rossmann fold of a beta-alpha form. The NAD(H)-binding
region is comprised of 2 structurally similar halves,
each of which contacts a mononucleotide. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site, and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 325
Score = 57.2 bits (139), Expect = 8e-09
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELDRFA 171
+T+ + G + G AA+Q+ + G V A+ G GAD V ++ R D A
Sbjct: 146 ETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNY--RAED-LA 202
Query: 172 NQILSY 177
++IL+
Sbjct: 203 DRILAA 208
>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR). QOR catalyzes the
conversion of a quinone + NAD(P)H to a hydroquinone +
NAD(P)+. Quinones are cyclic diones derived from
aromatic compounds. Membrane bound QOR acts in the
respiratory chains of bacteria and mitochondria, while
soluble QOR acts to protect from toxic quinones (e.g.
DT-diaphorase) or as a soluble eye-lens protein in some
vertebrates (e.g. zeta-crystalin). QOR reduces quinones
through a semi-quinone intermediate via a
NAD(P)H-dependent single electron transfer. QOR is a
member of the medium chain dehydrogenase/reductase
family, but lacks the zinc-binding sites of the
prototypical alcohol dehydrogenases of this group.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site, and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 323
Score = 54.8 bits (133), Expect = 5e-08
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIREL 167
+T+ ++GA G GLAA+Q+ KA G V A+ +A A LGAD+V+D+ +L
Sbjct: 141 ETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDL 196
>gnl|CDD|172547 PRK14055, PRK14055, aromatic amino acid hydroxylase; Provisional.
Length = 362
Score = 52.8 bits (126), Expect = 3e-07
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 426 EDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHEL 485
+ + KF + T FS PV+G ++ +L+ L R F +R K ++ PD+ H+L
Sbjct: 143 QAVIKFFELETHFSYYPVSGFVAPHQYLSLLQDRYFPIASVMRTLDKDNFSLTPDLIHDL 202
Query: 486 LGHVPLFADPSFAQFSQEIG 505
LGHVP PSF++F +G
Sbjct: 203 LGHVPWLLHPSFSEFFINMG 222
Score = 49.7 bits (118), Expect = 3e-06
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 539 TGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADP 598
T FS PV+G ++ +L+ L R F +R K ++ PD+ H+LLGHVP P
Sbjct: 153 THFSYYPVSGFVAPHQYLSLLQDRYFPIASVMRTLDKDNFSLTPDLIHDLLGHVPWLLHP 212
Query: 599 SFAQFSQEIG 608
SF++F +G
Sbjct: 213 SFSEFFINMG 222
>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone
oxidoreductase. PIG3 p53-inducible quinone
oxidoreductase, a medium chain dehydrogenase/reductase
family member, acts in the apoptotic pathway. PIG3
reduces ortho-quinones, but its apoptotic activity has
been attributed to oxidative stress generation, since
overexpression of PIG3 accumulates reactive oxygen
species. PIG3 resembles the MDR family member quinone
reductases, which catalyze the reduction of quinone to
hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES.
These proteins typically form dimers (typically higher
plants, mammals) or tetramers (yeast, bacteria), and
have 2 tightly bound zinc atoms per subunit, a catalytic
zinc at the active site, and a structural zinc in a lobe
of the catalytic domain. NAD(H) binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 323
Score = 52.1 bits (126), Expect = 4e-07
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELDRFA 171
+T+ I G G G AAIQ+ KA G V A+ G + LGAD +++ R D FA
Sbjct: 141 ETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACRALGADVAINY--RTED-FA 197
Query: 172 NQIL 175
++
Sbjct: 198 EEVK 201
>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically
binding an amino acid or other small ligand leading to
regulation of the enzyme. Members of this CD belong to
the superfamily of ACT regulatory domains. Pairs of ACT
domains are commonly involved in specifically binding an
amino acid or other small ligand leading to regulation
of the enzyme. The ACT domain has been detected in a
number of diverse proteins; some of these proteins are
involved in amino acid and purine biosynthesis,
phenylalanine hydroxylation, regulation of bacterial
metabolism and transcription, and many remain to be
characterized. ACT domain-containing enzymes involved in
amino acid and purine synthesis are in many cases
allosteric enzymes with complex regulation enforced by
the binding of ligands. The ACT domain is commonly
involved in the binding of a small regulatory molecule,
such as the amino acids L-Ser and L-Phe in the case of
D-3-phosphoglycerate dehydrogenase and the bifunctional
chorismate mutase-prephenate dehydratase enzyme
(P-protein), respectively. Aspartokinases typically
consist of two C-terminal ACT domains in a tandem
repeat, but the second ACT domain is inserted within
the first, resulting in, what is normally the terminal
beta strand of ACT2, formed from a region N-terminal of
ACT1. ACT domain repeats have been shown to have
nonequivalent ligand-binding sites with complex
regulatory patterns such as those seen in the
bifunctional enzyme, aspartokinase-homoserine
dehydrogenase (ThrA). In other enzymes, such as
phenylalanine hydroxylases, the ACT domain appears to
function as a flexible small module providing allosteric
regulation via transmission of conformational changes,
these conformational changes are not necessarily
initiated by regulatory ligand binding at the ACT domain
itself. ACT domains are present either singularly, N- or
C-terminal, or in pairs present C-terminal or between
two catalytic domains. Unique to cyanobacteria are four
ACT domains C-terminal to an aspartokinase domain. A few
proteins are composed almost entirely of ACT domain
repeats as seen in the four ACT domain protein, the ACR
protein, found in higher plants; and the two ACT domain
protein, the glycine cleavage system transcriptional
repressor (GcvR) protein, found in some bacteria. Also
seen are single ACT domain proteins similar to the
Streptococcus pneumoniae ACT domain protein
(uncharacterized pdb structure 1ZPV) found in both
bacteria and archaea. Purportedly, the ACT domain is an
evolutionarily mobile ligand binding regulatory module
that has been fused to different enzymes at various
times.
Length = 60
Score = 46.1 bits (110), Expect = 7e-07
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 269 HQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAPGGDLSSVIESLR 325
D G LAK L + + +N+ IE R+S + + GDL ++E+L
Sbjct: 5 GPDRPGLLAKVLSVLAEAGINITSIEQRTS-GDGGEADIFIVVDGDGDLEKLLEALE 60
>gnl|CDD|237598 PRK14056, PRK14056, phenylalanine 4-monooxygenase; Provisional.
Length = 578
Score = 52.0 bits (125), Expect = 8e-07
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 420 DNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEP 479
+ IP++E++++ L + G+ V G + F V IR YTP P
Sbjct: 60 ERIPKVEEMNECLAEI-GWGAVAVDGFIPPVAFFEFQGHGVLPIATDIRKVENIEYTPAP 118
Query: 480 DVCHELLGHVPLFADPSFAQFSQ---EIG 505
D+ HE GH P+ ADP++A++ + EIG
Sbjct: 119 DIIHEAAGHAPILADPTYAEYLRRFGEIG 147
Score = 43.5 bits (103), Expect = 3e-04
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 577 LYTPEPDVCHELLGHVPLFADPSFAQFSQ---EIG 608
YTP PD+ HE GH P+ ADP++A++ + EIG
Sbjct: 113 EYTPAPDIIHEAAGHAPILADPTYAEYLRRFGEIG 147
Score = 33.5 bits (77), Expect = 0.37
Identities = 41/163 (25%), Positives = 58/163 (35%), Gaps = 19/163 (11%)
Query: 8 DYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLL-IQNCGYAEDNIPQLEDISKFLKD 66
YT + W V R A H L +Q+ G + IP++E++++ L +
Sbjct: 20 QYTPVDHAVWRYVMRQNHSFLKDVA-----HPAYLNGLQSTGINIERIPKVEEMNECLAE 74
Query: 67 STGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDTLFIIGANRGNGLA 126
G+ V G + F V IR YTP PD II + G A
Sbjct: 75 I-GWGAVAVDGFIPPVAFFEFQGHGVLPIATDIRKVENIEYTPAPD---II--HEAAGHA 128
Query: 127 AIQVGKAYG--LTVFASVGCPVGVAKAYGLGADYVVDHTIREL 167
I Y L F +G KA D+ V +R L
Sbjct: 129 PILADPTYAEYLRRFGEIGA-----KAISSKEDHDVFEAVRTL 166
>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent
oxidoreductases [Energy production and conversion /
General function prediction only].
Length = 326
Score = 50.8 bits (122), Expect = 9e-07
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELDRFA 171
+T+ + GA G G AAIQ+ KA G TV A V + LGAD+V+++ + F
Sbjct: 144 ETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYR---EEDFV 200
Query: 172 NQIL 175
Q+
Sbjct: 201 EQVR 204
>gnl|CDD|190133 pfam01842, ACT, ACT domain. This family of domains generally have
a regulatory role. ACT domains are linked to a wide
range of metabolic enzymes that are regulated by amino
acid concentration. Pairs of ACT domains bind
specifically to a particular amino acid leading to
regulation of the linked enzyme. The ACT domain is found
in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95,
which is inhibited by serine. Aspartokinase EC:2.7.2.4,
which is regulated by lysine. Acetolactate synthase
small regulatory subunit, which is inhibited by valine.
Phenylalanine-4-hydroxylase EC:1.14.16.1, which is
regulated by phenylalanine. Prephenate dehydrogenase
EC:4.2.1.51. formyltetrahydrofolate deformylase
EC:3.5.1.10, which is activated by methionine and
inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5.
Length = 66
Score = 45.8 bits (109), Expect = 1e-06
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 264 VIFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAPGGDLSSVIES 323
V+ D G LA+ +N+ I +S + F+V DL + +E+
Sbjct: 2 VLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGD-KAGIVFIVVVVDEEDLEAALEA 60
Query: 324 LRS 326
L+
Sbjct: 61 LKK 63
>gnl|CDD|153202 cd04930, ACT_TH, ACT domain of the nonheme iron-dependent aromatic
amino acid hydroxylase, tyrosine hydroxylases (TH). ACT
domain of the nonheme iron-dependent aromatic amino acid
hydroxylase, tyrosine hydroxylases (TH). TH catalyses
the hydroxylation of L-Tyr to
3,4-dihydroxyphenylalanine, the rate limiting step in
the biosynthesis of catecholamines (dopamine,
noradrenaline and adrenaline), functioning as hormones
and neurotransmitters. The enzyme is not regulated by
its amino acid substrate, but instead by phosphorylation
at several serine residues located N-terminal of the ACT
domain, and by feedback inhibition by catecholamines at
the active site. Members of this CD belong to the
superfamily of ACT regulatory domains.
Length = 115
Score = 46.6 bits (111), Expect = 2e-06
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 274 GALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVEC-APGGDLSSVIESLRSSCSYIN 332
+L++ LK+F+ + H+ESR S + + E +V C DL +I SLR +
Sbjct: 53 SSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVR 112
Query: 333 I 333
+
Sbjct: 113 L 113
>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase,
PIG3 family. Members of this family are putative
quinone oxidoreductases that belong to the broader
superfamily (modeled by Pfam pfam00107) of
zinc-dependent alcohol (of medium chain length)
dehydrogenases and quinone oxiooreductases. The
alignment shows no motif of conserved Cys residues as
are found in zinc-binding members of the superfamily,
and members are likely to be quinone oxidoreductases
instead. A member of this family in Homo sapiens, PIG3,
is induced by p53 but is otherwise uncharacterized
[Unknown function, Enzymes of unknown specificity].
Length = 325
Score = 47.6 bits (114), Expect = 1e-05
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 113 TLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
T+ I G G G AIQ+ KA+G VF + G A LGAD +++
Sbjct: 142 TVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACEALGADIAINYR 192
>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 573
Score = 47.8 bits (115), Expect = 1e-05
Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 13/69 (18%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCH----------SCPFS 259
FFF FF FF +F + F + L S + S S F
Sbjct: 4 CLISFFFLFFLSLILFFLGLYFLLNDYSLFIEWELFS---LNSSSIVMTFLFDWMSLLFM 60
Query: 260 LFDFVIFSN 268
F I S
Sbjct: 61 SFVLFISSM 69
Score = 45.9 bits (110), Expect = 5e-05
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFS---LFDFV 264
FFF FF +F +F + F+ + S +S LFD++
Sbjct: 1 MSMCLISFFFLFFLSLILFFLGLYFLLNDYSLFIEWE---LFSLNSSSIVMTFLFDWM 55
Score = 35.5 bits (83), Expect = 0.082
Identities = 5/48 (10%), Positives = 12/48 (25%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQS 252
Y+ + + F +F + + + PL
Sbjct: 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLG 515
Score = 35.1 bits (82), Expect = 0.11
Identities = 3/37 (8%), Positives = 6/37 (16%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFY 241
K + + F + F
Sbjct: 537 NFLKKLSKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573
Score = 34.7 bits (81), Expect = 0.16
Identities = 4/38 (10%), Positives = 6/38 (15%)
Query: 207 YKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
Y + Y F + L
Sbjct: 536 YNFLKKLSKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573
Score = 34.7 bits (81), Expect = 0.16
Identities = 3/37 (8%), Positives = 9/37 (24%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
+ + + + F ++ LS
Sbjct: 467 WLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLS 503
Score = 34.3 bits (80), Expect = 0.18
Identities = 3/34 (8%), Positives = 7/34 (20%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
F + + + + FL
Sbjct: 460 FVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFL 493
Score = 34.0 bits (79), Expect = 0.27
Identities = 6/43 (13%), Positives = 12/43 (27%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQ 247
+ K++ F +F F Y ++ Q
Sbjct: 482 KSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQ 524
Score = 33.6 bits (78), Expect = 0.34
Identities = 6/44 (13%), Positives = 11/44 (25%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
L F + F+ F + + + L S
Sbjct: 440 LIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKS 483
Score = 33.6 bits (78), Expect = 0.37
Identities = 5/38 (13%), Positives = 10/38 (26%)
Query: 208 KHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
+ + F + + F + LLL
Sbjct: 533 QGLYNFLKKLSKLIQWLQNNNLKIYLLSFLLWMIILLL 570
Score = 33.6 bits (78), Expect = 0.37
Identities = 7/47 (14%), Positives = 15/47 (31%)
Query: 200 FADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
+ ++ +Y + F +F F + +Y LS
Sbjct: 472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLS 518
Score = 33.6 bits (78), Expect = 0.38
Identities = 4/37 (10%), Positives = 8/37 (21%)
Query: 209 HFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
+ F + + F + LL
Sbjct: 536 YNFLKKLSKLIQWLQNNNLKIYLLSFLLWMIILLLLF 572
Score = 33.2 bits (77), Expect = 0.47
Identities = 4/36 (11%), Positives = 7/36 (19%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
F + + F + L L
Sbjct: 538 FLKKLSKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573
Score = 33.2 bits (77), Expect = 0.52
Identities = 5/44 (11%), Positives = 9/44 (20%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYF 242
Y L F K F + + + +
Sbjct: 446 YMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLKNYKL 489
Score = 32.8 bits (76), Expect = 0.64
Identities = 3/35 (8%), Positives = 6/35 (17%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
F + + + Y L
Sbjct: 459 LFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFL 493
Score = 32.4 bits (75), Expect = 0.83
Identities = 7/45 (15%), Positives = 13/45 (28%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQ 247
L+ + + F +F F + +Y L L
Sbjct: 472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGS 516
Score = 31.3 bits (72), Expect = 1.8
Identities = 2/38 (5%), Positives = 8/38 (21%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYF 242
+N+ + + F + +
Sbjct: 536 YNFLKKLSKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573
Score = 31.3 bits (72), Expect = 1.8
Identities = 6/46 (13%), Positives = 12/46 (26%), Gaps = 2/46 (4%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFF--YFFFFFFFFFYFFYFLLLS 246
L + + + F +F F Y + L+
Sbjct: 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLN 513
Score = 31.3 bits (72), Expect = 1.9
Identities = 4/44 (9%), Positives = 10/44 (22%)
Query: 198 KYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFY 241
+L + F +F F + ++
Sbjct: 476 SLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSL 519
Score = 30.5 bits (70), Expect = 2.9
Identities = 4/34 (11%), Positives = 9/34 (26%)
Query: 198 KYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFF 231
K + L ++ + F + F
Sbjct: 540 KKLSKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573
Score = 30.5 bits (70), Expect = 3.1
Identities = 6/40 (15%), Positives = 11/40 (27%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPL 249
F + F+ + + Y + LS L
Sbjct: 442 FPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNL 481
Score = 30.5 bits (70), Expect = 3.2
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
+ F + F+ F + Y L
Sbjct: 439 WLIFPEPYMICLPFYLKLLTLFVILLGGWLGYEL 472
Score = 30.1 bits (69), Expect = 4.2
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHS 255
FF FF FFF + F Y+ + ++S ++
Sbjct: 367 MVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNN 411
Score = 29.3 bits (67), Expect = 7.3
Identities = 7/52 (13%), Positives = 12/52 (23%), Gaps = 4/52 (7%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFF----FFFFFYFFFFFFFFFYFFYFLLLS 246
Y L + + F F F + ++ L S
Sbjct: 470 YELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKS 521
>gnl|CDD|153177 cd04905, ACT_CM-PDT, C-terminal ACT domain of the bifunctional
chorismate mutase-prephenate dehydratase (CM-PDT) enzyme
and the prephenate dehydratase (PDT) enzyme. The
C-terminal ACT domain of the bifunctional chorismate
mutase-prephenate dehydratase (CM-PDT) enzyme and the
prephenate dehydratase (PDT) enzyme, found in plants,
fungi, bacteria, and archaea. The P-protein of E. coli
(CM-PDT, PheA) catalyzes the conversion of chorismate to
prephenate and then the decarboxylation and dehydration
to form phenylpyruvate. These are the first two steps in
the biosynthesis of L-Phe and L-Tyr via the shikimate
pathway in microorganisms and plants. The E. coli
P-protein (CM-PDT) has three domains with an N-terminal
domain with chorismate mutase activity, a middle domain
with prephenate dehydratase activity, and an ACT
regulatory C-terminal domain. The prephenate dehydratase
enzyme has a PDT and ACT domain. The ACT domain is
essential to bring about the negative allosteric
regulation by L-Phe binding. L-Phe binds with positive
cooperativity; with this binding, there is a shift in
the protein to less active tetrameric and higher
oligomeric forms from a more active dimeric form.
Members of this CD belong to the superfamily of ACT
regulatory domains.
Length = 80
Score = 42.9 bits (102), Expect = 2e-05
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 271 DEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVEC---APGGDLSSVIESLRSS 327
++ GAL L +F + +NL IESR S Y F ++ +++ +E L+
Sbjct: 10 NKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRL 69
Query: 328 CSYINII 334
++ ++
Sbjct: 70 TEFVKVL 76
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 45.8 bits (109), Expect = 3e-05
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELDRFA 171
DT+ ++GA G GL A Q+ KA G V + + A LGAD+V+D+ +E D
Sbjct: 136 DTVLVLGAG-GVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDY--KEEDLEE 192
Query: 172 NQILSYGSELDA 183
L+ G D
Sbjct: 193 ELRLTGGGGADV 204
>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. This group contains proteins that
share the characteristic catalytic and structural
zinc-binding sites of the zinc-dependent alcohol
dehydrogenase family. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the cleft
between the catalytic and coenzyme-binding domains at
the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine
(His-51), the ribose of NAD, a serine (Ser-48), then the
alcohol, which allows the transfer of a hydride to NAD+,
creating NADH and a zinc-bound aldehyde or ketone. In
yeast and some bacteria, the active site zinc binds an
aldehyde, polarizing it, and leading to the reverse
reaction.
Length = 332
Score = 45.8 bits (109), Expect = 4e-05
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVD 161
DT+ + GA G G+ AIQ+ KA G V A P + LGADYV+D
Sbjct: 164 DTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGADYVID 213
>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 319
Score = 44.5 bits (106), Expect = 1e-04
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGC-PVGVAKAYGLGADYVVDHT 163
+ I GA+ G G A+Q+ KA G V C LGAD V+D+T
Sbjct: 145 QRVLINGASGGVGTFAVQIAKALGAHVTGV--CSTRNAELVRSLGADEVIDYT 195
>gnl|CDD|214460 MTH00212, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 160
Score = 41.5 bits (98), Expect = 2e-04
Identities = 13/54 (24%), Positives = 15/54 (27%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQS 252
Y L+ N FF +F F Y F L L L S
Sbjct: 67 YMVALSPNEHLFFKKYFKGFGMILISLNLYLLLMTLGSSNFSPMLNLKLELNVS 120
>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 445
Score = 43.2 bits (103), Expect = 3e-04
Identities = 12/57 (21%), Positives = 17/57 (29%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFVIFS 267
F F F F ++ F F F+LL + F D + F
Sbjct: 4 FLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFG 60
Score = 41.7 bits (99), Expect = 9e-04
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 209 HFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F ++ F F F F FYF +S
Sbjct: 12 IPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNIS 49
Score = 41.7 bits (99), Expect = 0.001
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
+ ++ F F F F F+F YF
Sbjct: 14 LCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFF 52
Score = 40.1 bits (95), Expect = 0.003
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F+ + FF FF F ++ ++L+
Sbjct: 154 LLVGIFYLYNNSGSLSFFLLNFFGSLNFLWYLSMILA 190
Score = 40.1 bits (95), Expect = 0.003
Identities = 8/37 (21%), Positives = 10/37 (27%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F F F ++ F F F LS
Sbjct: 6 FMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLS 42
Score = 39.4 bits (93), Expect = 0.005
Identities = 7/37 (18%), Positives = 9/37 (24%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F F ++ F F F F S
Sbjct: 10 FLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFS 46
Score = 39.4 bits (93), Expect = 0.006
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F F F F F+F +FF F +LLS
Sbjct: 29 FLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLS 65
Score = 38.6 bits (91), Expect = 0.010
Identities = 6/37 (16%), Positives = 9/37 (24%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F F ++ F F + F L
Sbjct: 7 MLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSF 43
Score = 38.2 bits (90), Expect = 0.011
Identities = 9/35 (25%), Positives = 10/35 (28%), Gaps = 3/35 (8%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFY---FFFFFFFF 236
N F F F F F F+ FF
Sbjct: 82 KNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFF 116
Score = 38.2 bits (90), Expect = 0.013
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 207 YKHFFFFFFFFFFFFFFFFFFYFFFFF--FFFFYFFY 241
YK + F F F F F FY F+
Sbjct: 80 YKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFF 116
Score = 37.8 bits (89), Expect = 0.015
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 198 KYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
K+ L F F ++ F + F F ++F +
Sbjct: 3 KFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNI 48
Score = 37.8 bits (89), Expect = 0.017
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
F+ + FF FF F ++ FL
Sbjct: 159 FYLYNNSGSLSFFLLNFFGSLNFLWYLSMILAFL 192
Score = 37.1 bits (87), Expect = 0.029
Identities = 4/37 (10%), Positives = 9/37 (24%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F ++ + F F + F +
Sbjct: 11 LIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSN 47
Score = 35.9 bits (84), Expect = 0.058
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFF---FFFFFFYF 239
K+ + F F F F F F+ +F
Sbjct: 79 VYKKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFF 116
Score = 35.5 bits (83), Expect = 0.093
Identities = 8/35 (22%), Positives = 10/35 (28%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
F F+ + FF FF FL
Sbjct: 149 FASLPLLVGIFYLYNNSGSLSFFLLNFFGSLNFLW 183
Score = 35.1 bits (82), Expect = 0.12
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 6/46 (13%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFF------YFFYFLL 244
F + FF FF F ++ F +F + L
Sbjct: 159 FYLYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWL 204
Score = 34.0 bits (79), Expect = 0.27
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 215 FFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F F F F ++ LLS
Sbjct: 1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLS 32
Score = 33.6 bits (78), Expect = 0.30
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
F F F F ++ FLL
Sbjct: 1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLS 32
Score = 32.8 bits (76), Expect = 0.52
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 210 FFFFFFFFFF---FFFFFFFFYFFFFFFFFFYFFYFLLLS 246
+ F+ F F+ Y FF +F L+
Sbjct: 141 IYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFFGSLN 180
Score = 30.9 bits (71), Expect = 2.4
Identities = 6/34 (17%), Positives = 9/34 (26%)
Query: 212 FFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
F F+ + FF +F L
Sbjct: 149 FASLPLLVGIFYLYNNSGSLSFFLLNFFGSLNFL 182
Score = 30.5 bits (70), Expect = 3.3
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 24/89 (26%)
Query: 203 LAFNYKHFFFFFFFF------------------------FFFFFFFFFFYFFFFFFFFFY 238
L F+ + F+ FF + F+ F F+
Sbjct: 102 LTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYL 161
Query: 239 FFYFLLLSQPLIQSCHSCPFSLFDFVIFS 267
+ LS L+ S F + +I +
Sbjct: 162 YNNSGSLSFFLLNFFGSLNFLWYLSMILA 190
Score = 29.0 bits (66), Expect = 8.9
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 215 FFFFFFFFFFFFFYFFFFFFFFFYFFY 241
+ + F F F F F
Sbjct: 79 VYKKNNYSNLFLFLILFLLIFLLLTFS 105
>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional.
Length = 334
Score = 43.1 bits (102), Expect = 3e-04
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 110 EPDTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVD 161
+ +T+ + GA G G+ AIQV KA G V A AK ADYV+
Sbjct: 162 KGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSE-SKAKIVSKYADYVIV 212
>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members. This
group contains a structure identified as an arginate
lyase. Other members are identified quinone reductases,
alginate lyases, and other proteins related to the
zinc-dependent dehydrogenases/reductases. QOR catalyzes
the conversion of a quinone and NAD(P)H to a
hydroquinone and NAD(P+. Quinones are cyclic diones
derived from aromatic compounds. Membrane bound QOR acts
in the respiratory chains of bacteria and mitochondria,
while soluble QOR acts to protect from toxic quinones
(e.g. DT-diaphorase) or as a soluble eye-lens protein in
some vertebrates (e.g. zeta-crystalin). QOR reduces
quinones through a semi-quinone intermediate via a
NAD(P)H-dependent single electron transfer. QOR is a
member of the medium chain dehydrogenase/reductase
family, but lacks the zinc-binding sites of the
prototypical alcohol dehydrogenases of this group.
Alcohol dehydrogenase in the liver converts ethanol and
NAD+ to acetaldehyde and NADH, while in yeast and some
other microorganisms ADH catalyzes the conversion
acetaldehyde to ethanol in alcoholic fermentation. ADH
is a member of the medium chain alcohol dehydrogenase
family (MDR), which has a NAD(P)(H)-binding domain in a
Rossmann fold of a beta-alpha form. The NAD(H)-binding
region is comprised of 2 structurally similar halves,
each of which contacts a mononucleotide. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H) binding occurs in the cleft
between the catalytic and coenzyme-binding domains at
the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 336
Score = 42.5 bits (101), Expect = 4e-04
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 113 TLFIIGANRGNGLAAIQVGKAYG-LTVFASVGCPVGVAKAYGLGADYVVDH 162
TL IIG G G AIQ+ K LTV A+ P +A LGAD+V++H
Sbjct: 152 TLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGADHVINH 202
>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 350
Score = 42.3 bits (100), Expect = 5e-04
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVD 161
+T+ + GA+ G G A +Q+ K G V A G LGAD V+
Sbjct: 179 ETVLVTGASGGVGSALVQLAKRRGAIVIAVAG-AAKEEAVRALGADTVIL 227
>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family
protein. Members of this model form a distinct subset
of the larger family of oxidoreductases that includes
zinc-binding alcohol dehydrogenases and NADPH:quinone
reductases (pfam00107). While some current members of
this family carry designations as putative alginate
lyase, it seems no sequence with a direct
characterization as such is detected by this model
[Energy metabolism, Fermentation].
Length = 336
Score = 42.0 bits (99), Expect = 6e-04
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 109 PEPDTLFIIGANRGNGLAAIQVGKAY-GLTVFASVGCPVGVAKAYGLGADYVVDHT 163
+ L IIG G G IQ+ + GLTV A+ P LGA +V+DH+
Sbjct: 147 GDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHS 202
>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase
(QOR). NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 320
Score = 41.8 bits (99), Expect = 7e-04
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELDR-- 169
DTL I G GLAA+++ KA G TV A+ P A LGAD VV +D
Sbjct: 144 DTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKELGADEVV------IDDGA 197
Query: 170 FANQILSYGSELDA 183
A Q+ + D
Sbjct: 198 IAEQLRAAPGGFDK 211
>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 325
Score = 41.9 bits (99), Expect = 7e-04
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
T+ I G G G A+Q+ K GL V + LGAD+V+D+
Sbjct: 143 RTILITGGAGGVGSFAVQLAKRAGLRVITTCS-KRNFEYVKSLGADHVIDYN 193
>gnl|CDD|177159 MTH00097, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 121
Score = 39.5 bits (93), Expect = 7e-04
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFF-------FYFFYFLLL 245
+ FF F FFFFFF+F+ +FF +Y ++L++
Sbjct: 47 LKKPYLVFFSLFLSMFFFFFFYFFKVYFFSNLSLNVFELYYNIFWLIV 94
Score = 31.8 bits (73), Expect = 0.34
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
Query: 210 FFFFFFFFFFFFFFFFF----------FYFFFFFFFFFYFFYFLLL 245
FFFFFF+FF +FF ++ FF F +F+
Sbjct: 62 FFFFFFYFFKVYFFSNLSLNVFELYYNIFWLIVFFILFVLLFFMNF 107
>gnl|CDD|223155 COG0077, PheA, Prephenate dehydratase [Amino acid transport and
metabolism].
Length = 279
Score = 41.4 bits (98), Expect = 8e-04
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 271 DEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAPGGD---LSSVIESLRSS 327
++ GAL K L +F K +NL IESR Y F ++ D + +E L+
Sbjct: 203 NKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEI 262
Query: 328 CSYINII 334
++ I+
Sbjct: 263 TEFVKIL 269
>gnl|CDD|214445 MTH00166, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 160
Score = 39.8 bits (94), Expect = 0.001
Identities = 12/55 (21%), Positives = 13/55 (23%), Gaps = 7/55 (12%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFF-------FFFFYFFYFLLLS 246
Y LA N K F F F F +F LS
Sbjct: 66 YITSLASNEKFKFSLKLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLS 120
Score = 31.3 bits (72), Expect = 0.70
Identities = 9/46 (19%), Positives = 13/46 (28%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
N+ + F FF F + F F Y L+
Sbjct: 98 IKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLI 143
Score = 28.6 bits (65), Expect = 6.6
Identities = 13/78 (16%), Positives = 18/78 (23%), Gaps = 15/78 (19%)
Query: 205 FNYKHFFFFFFFFFFF-------FFFF--------FFFYFFFFFFFFFYFFYFLLLSQPL 249
K F+F + F F F + F F F L
Sbjct: 41 LMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLLILFLLMLLLMLNNFIKN 100
Query: 250 IQSCHSCPFSLFDFVIFS 267
+ + F FS
Sbjct: 101 SEMSNFNNNFNFFENSFS 118
>gnl|CDD|177158 MTH00095, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 527
Score = 41.4 bits (98), Expect = 0.001
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 213 FFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
FF F FF F F +YFF F FF LLL+
Sbjct: 140 FFIFLFFSGFIFSSYYFFSFSFFSSSMILMLLLT 173
Score = 39.1 bits (92), Expect = 0.006
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 17/63 (26%)
Query: 199 YFADLAFNYKHFFFFFFFFFF--------------FFFFFFF---FYFFFFFFFFFYFFY 241
Y + + N+ FF FF F + F+ FY F F F+FF
Sbjct: 394 YSSSVLMNFLSLMLVFFSVFFLWWLNFNLLNLPSLFLYLDFYVPLFYLFMIMLFSFFFFK 453
Query: 242 FLL 244
L
Sbjct: 454 LLF 456
Score = 38.7 bits (91), Expect = 0.008
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFV 264
+ FFFFF F F F FF + F F L+ FSL +
Sbjct: 4 LIFLILFFFFFLLLFILFLPFMKLNLFFLEWDFLSLKFNFYFNSLL-------FSLILLL 56
Query: 265 IFSN 268
+ +
Sbjct: 57 VTLS 60
Score = 38.7 bits (91), Expect = 0.009
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
F YK F FF F FFFF + F + F F FL
Sbjct: 489 FGYKGFNFFSSFSFFFFSYMKSFKYNSLLILLFLIFLFL 527
Score = 38.7 bits (91), Expect = 0.010
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFY----FFFFFFFFFYFFYFLLLS 246
F + ++ FF FFF F F Y + FF F S
Sbjct: 350 ELFFFNNYMIFFSLMFFFSVFLTFGYSYRLWKSFFLSFSKVVNVYSSS 397
Score = 38.0 bits (89), Expect = 0.015
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 208 KHFFFFFFFFFFFFFFFFFFYFFFFFFFFFY-----FFYFLLLSQPL 249
K FFF + FF +FF F F Y +FL S+ +
Sbjct: 345 KELILELFFFNNYMIFFSLMFFFSVFLTFGYSYRLWKSFFLSFSKVV 391
Score = 37.2 bits (87), Expect = 0.024
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 198 KYFAD-LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
K+F D A N + FF F F + F FF F F+FF ++
Sbjct: 462 KFFVDYFAKNVIYKLKNLKFFDLFLNKFGYKGFNFFSSFSFFFFSYM 508
Score = 37.2 bits (87), Expect = 0.025
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 207 YKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFVI 265
+K FF F + F FF F+ L+ L+ F DF +
Sbjct: 380 WKSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVFFLWWLNFNLL--NLPSLFLYLDFYV 436
Score = 35.7 bits (83), Expect = 0.089
Identities = 23/80 (28%), Positives = 26/80 (32%), Gaps = 15/80 (18%)
Query: 204 AFNYKHFF---FFFFFFFFFFFFFF------FFYFFFFFFFFFYFFYFLL------LSQP 248
F Y F+ F+ F F FFFF Y FF +F Y L L
Sbjct: 428 LFLYLDFYVPLFYLFMIMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLN 487
Query: 249 LIQSCHSCPFSLFDFVIFSN 268
FS F F FS
Sbjct: 488 KFGYKGFNFFSSFSFFFFSY 507
Score = 35.3 bits (82), Expect = 0.092
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
F + F+ F+ F F FFFF F
Sbjct: 427 SLFLYLDFYVPLFYLFMIMLFSFFFFKLLFKELK 460
Score = 34.5 bits (80), Expect = 0.19
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
L FN + F + F+ F+ F F FFFF + L
Sbjct: 418 LNFNLLNLPSLFLYLDFYVPLFYLFMIMLFSFFFFKLLFKELK 460
Score = 31.0 bits (71), Expect = 2.4
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 205 FNYKHF--FFFFFFFFFFFFFFF-------FFYFFFFFFFFFYFFYFLLLS 246
YK F +F + F F Y F FF F FF+F +
Sbjct: 459 LKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYKGFNFFSSFSFFFFSYMK 509
Score = 29.5 bits (67), Expect = 6.8
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFF 236
FF F F ++FF F FF
Sbjct: 145 FFSGFIFSSYYFFSFSFFSSSMILMLL 171
>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone
reductase-like medium chain degydrogenases/reductases.
Members identified as zinc-dependent alcohol
dehydrogenases and quinone oxidoreductase. QOR catalyzes
the conversion of a quinone + NAD(P)H to a hydroquinone
+ NAD(P)+. Quinones are cyclic diones derived from
aromatic compounds. Membrane bound QOR actin the
respiratory chains of bacteria and mitochondria, while
soluble QOR acts to protect from toxic quinones (e.g.
DT-diaphorase) or as a soluble eye-lens protein in some
vertebrates (e.g. zeta-crystalin). QOR reduces quinones
through a semi-quinone intermediate via a
NAD(P)H-dependent single electron transfer. QOR is a
member of the medium chain dehydrogenase/reductase
family, but lacks the zinc-binding sites of the
prototypical alcohol dehydrogenases of this group.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H) binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 309
Score = 40.6 bits (96), Expect = 0.002
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 110 EPDTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
T+ I GA G G A+Q+ KA G V A+ LGAD V+D+T
Sbjct: 144 AGQTVLIHGAAGGVGSFAVQLAKARGARVIATAS-AANADFLRSLGADEVIDYT 196
>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase. Enoylreductase in Polyketide
synthases.
Length = 287
Score = 40.4 bits (96), Expect = 0.002
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 122 GNGLAAIQVGKAYGLTVFASVGCP--VGVAKAYGLGADYVVDHTIRELDRFANQIL 175
G G AAIQ+ + G VFA+ G P +A G+ D++ R+L FA++IL
Sbjct: 115 GVGQAAIQLARHLGAEVFATAGSPEKRDFLRALGIPDDHIFSS--RDLS-FADEIL 167
>gnl|CDD|177157 MTH00094, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 403
Score = 40.7 bits (96), Expect = 0.002
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
L F + F FF F FF F F + + FFFF F + LL+
Sbjct: 3 LLFFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLI 45
Score = 39.5 bits (93), Expect = 0.004
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFF-------FFFFYFFYFLLLS 246
FFF F FF F FF F F FFFF F F+LL
Sbjct: 2 SLLFFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLI 45
Score = 38.0 bits (89), Expect = 0.012
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFF-----FFFFFFYFFYFLLL 245
+ FF F FF F FF F + + FFFF + F L+
Sbjct: 1 LSLLFFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIF 46
Score = 37.2 bits (87), Expect = 0.026
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFF--FFFYFFYFLLL 245
F+ FF F FF F F + + FFFF F F F+++
Sbjct: 7 FSPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMV 49
Score = 34.9 bits (81), Expect = 0.12
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 219 FFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
FFF + FF F FF F F S
Sbjct: 1 LSLLFFFSPFLFFLFLMFFSFLMFNNYS 28
Score = 34.5 bits (80), Expect = 0.16
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 212 FFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F F F FF+ FF+F FY+ FL++S
Sbjct: 334 FLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVS 368
Score = 33.3 bits (77), Expect = 0.36
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 207 YKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
Y FF F F F + FFFF +F FF + F+ L LS
Sbjct: 121 YAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFILSLS 160
Score = 33.0 bits (76), Expect = 0.57
Identities = 13/62 (20%), Positives = 17/62 (27%), Gaps = 21/62 (33%)
Query: 205 FNYKHFFFFFFFFFFFFFFFF---------------------FFYFFFFFFFFFYFFYFL 243
F F FFF FF+F F++ F F F+
Sbjct: 341 FMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFMMFNMFWLS 400
Query: 244 LL 245
L
Sbjct: 401 LF 402
Score = 31.8 bits (73), Expect = 1.1
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 208 KHFFFFFFFFFFFFFFFFFFYFFFFFFFFFY 238
K F F F F F F+ FY
Sbjct: 373 KKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403
Score = 31.4 bits (72), Expect = 1.4
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFF 240
+ ++ F F F + F F+ F+
Sbjct: 366 IVSSFMGKKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403
Score = 31.4 bits (72), Expect = 1.6
Identities = 7/31 (22%), Positives = 8/31 (25%)
Query: 213 FFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
F F F F F F+ F
Sbjct: 373 KKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403
Score = 31.0 bits (71), Expect = 1.9
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFFY 241
F F F F F F+ FY
Sbjct: 373 KKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403
Score = 29.5 bits (67), Expect = 6.0
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 212 FFFFFFFFFFFFFFFFYFFFFFFFFFYFFYF 242
F F F F F F+ ++
Sbjct: 373 KKFSNFNNFNVGLSLPLVFMMFNMFWLSLFY 403
>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 328
Score = 40.3 bits (95), Expect = 0.002
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 111 PDTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVD 161
D++ I A+ GLAAIQ+ A G TV A+ LGA +V+
Sbjct: 145 GDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLALGAAHVIV 195
>gnl|CDD|177152 MTH00087, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 195
Score = 39.2 bits (92), Expect = 0.002
Identities = 9/58 (15%), Positives = 16/58 (27%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFVIFS 267
FF F F F + ++ F+ LL+ + + F
Sbjct: 4 VFFLDVFMFVFLLQYLLYFKESMLNVLVKKFFGLLIIVFSYSNKLPLSSVISFFTFIV 61
Score = 30.7 bits (70), Expect = 1.7
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
+F D+ F + + +F FF F + L LS
Sbjct: 5 FFLDV-FMFVFLLQYLLYFKESMLNVLVKKFFGLLIIVFSYSNKLPLS 51
Score = 30.3 bits (69), Expect = 2.4
Identities = 8/33 (24%), Positives = 9/33 (27%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYF 242
F + FF F F F F Y
Sbjct: 42 FSYSNKLPLSSVISFFTFIVLLLFCFGGLFPYS 74
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 39.0 bits (91), Expect = 0.003
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 206 NYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSC----HSCPFSLF 261
N+K+F F + + F++ + F L L S S F LF
Sbjct: 83 NHKYFLLFLLYLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLF 142
Query: 262 DFVIFSNH 269
+ H
Sbjct: 143 LSFLLFFH 150
Score = 32.8 bits (75), Expect = 0.24
Identities = 11/41 (26%), Positives = 12/41 (29%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
FFF F FF F F F+ L L
Sbjct: 113 IRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFFHLYL 153
Score = 32.5 bits (74), Expect = 0.39
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 199 YFADLAFNYKHFFFFFFFFF--FFFFFFFFFYFFFFFFFFFYFFYFLLLSQ 247
Y L N + FFF F F+ F F F+ Y +L +
Sbjct: 108 YLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFFHLYLILKNI 158
Score = 31.7 bits (72), Expect = 0.61
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFF-FYFFYF 242
F L + ++ FFF F FF F + +F
Sbjct: 105 SFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFF 149
Score = 30.9 bits (70), Expect = 1.3
Identities = 10/46 (21%), Positives = 12/46 (26%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
Y FFF F FF + + L LI
Sbjct: 109 LVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFFHLYLI 154
Score = 30.5 bits (69), Expect = 1.6
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 193 YRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFF 233
R +F + + FF F F +F +
Sbjct: 113 IRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFFHLYL 153
Score = 29.8 bits (67), Expect = 2.6
Identities = 7/45 (15%), Positives = 10/45 (22%)
Query: 192 VYRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFF 236
+ R F FF F + FF +
Sbjct: 109 LVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFFHLYL 153
>gnl|CDD|214457 MTH00205, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 448
Score = 39.6 bits (93), Expect = 0.004
Identities = 16/42 (38%), Positives = 16/42 (38%)
Query: 209 HFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
FF FF FFF F F F F LS PLI
Sbjct: 22 SFFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLI 63
Score = 34.2 bits (79), Expect = 0.19
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
FF FFF F F F F L++
Sbjct: 29 LIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIM 64
Score = 34.2 bits (79), Expect = 0.22
Identities = 12/49 (24%), Positives = 15/49 (30%)
Query: 198 KYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F + F F + FF FF FFF F +S
Sbjct: 2 SIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNSFLMTSFIS 50
Score = 33.0 bits (76), Expect = 0.50
Identities = 12/52 (23%), Positives = 17/52 (32%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLF 261
F F + FF FF F+F L++ + S SL
Sbjct: 10 LIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLP 61
Score = 32.6 bits (75), Expect = 0.71
Identities = 14/58 (24%), Positives = 15/58 (25%), Gaps = 2/58 (3%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFVIFS 267
F F F F + FF FF S S S F F S
Sbjct: 4 FGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNSF--LMTSFISSSFSFDSLS 59
Score = 29.6 bits (67), Expect = 5.7
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 212 FFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
FF FFF F + F F ++LS
Sbjct: 32 LFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLS 66
>gnl|CDD|237013 PRK11898, PRK11898, prephenate dehydratase; Provisional.
Length = 283
Score = 39.0 bits (92), Expect = 0.004
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 264 VIFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVEC-APGGD--LSSV 320
++ + + GAL K L F +NL IESR + Y F ++ D ++
Sbjct: 199 LVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEA 258
Query: 321 IESLRSSCSYINII 334
++ L + + ++
Sbjct: 259 LKELEALGEDVKVL 272
>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase. Member
identified as possible enoyl reductase of the MDR
family. 2-enoyl thioester reductase (ETR) catalyzes the
NADPH-dependent dependent conversion of trans-2-enoyl
acyl carrier protein/coenzyme A (ACP/CoA) to
acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl
thioester reductase activity has been linked in Candida
tropicalis as essential in maintaining mitiochondrial
respiratory function. This ETR family is a part of the
medium chain dehydrogenase/reductase family, but lack
the zinc coordination sites characteristic of the
alcohol dehydrogenases in this family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. The N-terminal catalytic domain has a
distant homology to GroES. These proteins typically
form dimers (typically higher plants, mammals) or
tetramers (yeast, bacteria), and have 2 tightly bound
zinc atoms per subunit, a catalytic zinc at the active
site, and a structural zinc in a lobe of the catalytic
domain. NAD(H) binding occurs in the cleft between the
catalytic and coenzyme-binding domains at the active
site, and coenzyme binding induces a conformational
closing of this cleft. Coenzyme binding typically
precedes and contributes to substrate binding. Candida
tropicalis enoyl thioester reductase (Etr1p) catalyzes
the NADPH-dependent reduction of trans-2-enoyl
thioesters in mitochondrial fatty acid synthesis. Etr1p
forms homodimers, with each subunit containing a
nucleotide-binding Rossmann fold domain and a catalytic
domain.
Length = 324
Score = 39.3 bits (92), Expect = 0.004
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
D + + A G G +Q+ KA G TV + G P A LGAD VD+T
Sbjct: 144 DVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRALGADVAVDYT 195
>gnl|CDD|177150 MTH00083, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 256
Score = 38.8 bits (91), Expect = 0.006
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 200 FADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F L+ + + FF FF + F+ FFF Y L +S
Sbjct: 5 FHILSLSSYPYMMFFSSLGLTSSLVVFFKYGLFYSFFFSLLYLLFIS 51
Score = 32.6 bits (75), Expect = 0.57
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 209 HFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
H FF F F F F F FFF F+ FF L+
Sbjct: 67 HNFFVMDGFKFGMILFIFSEFMFFFSIFWTFFDAALV 103
Score = 32.2 bits (74), Expect = 0.71
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 206 NYKHFFFF--FFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
+Y + FF FF + F+ FFF Y + L
Sbjct: 12 SYPYMMFFSSLGLTSSLVVFFKYGLFYSFFFSLLYLLFISFL 53
Score = 28.8 bits (65), Expect = 9.4
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFF 240
FF + F+ FFF + F F +
Sbjct: 25 TSSLVVFFKYGLFYSFFFSLLYLLFISFLWG 55
>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1. Human
Reticulon 4 Interacting Protein 1 is a member of the
medium chain dehydrogenase/ reductase (MDR) family.
Riticulons are endoplasmic reticulum associated proteins
involved in membrane trafficking and neuroendocrine
secretion. The MDR/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 350
Score = 38.7 bits (91), Expect = 0.008
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 115 FIIGANRGNGLAAIQVGKAYGLTVFASVGCP---VGVAKAYGLGADYVVDHT 163
I+G + G G AIQ+ KA+G V + C + + K+ LGAD V+D+
Sbjct: 167 LILGGSGGVGTFAIQLLKAWGAHVTTT--CSTDAIPLVKS--LGADDVIDYN 214
>gnl|CDD|236301 PRK08577, PRK08577, hypothetical protein; Provisional.
Length = 136
Score = 36.5 bits (85), Expect = 0.009
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 12/63 (19%)
Query: 271 DEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECA-------PGGDLSSVIES 323
D G LAK L +H V++L E R E + EC DL + E
Sbjct: 65 DRPGVLAKITGLLAEHGVDILATECEELKRGE-----LAECVIIVDLSKSDIDLEELEEE 119
Query: 324 LRS 326
L+
Sbjct: 120 LKK 122
>gnl|CDD|165783 PLN00218, PLN00218, predicted protein; Provisional.
Length = 151
Score = 36.5 bits (84), Expect = 0.012
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 209 HFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFY 241
+F +F +FF FFFFFF+ F FFFF F+
Sbjct: 9 YFPYFRYFFLFFFFFFWRESSLVFLFFFFLAFH 41
Score = 36.1 bits (83), Expect = 0.017
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYF 242
+F +F +FF FFFFFF+ F FF+F F
Sbjct: 9 YFPYFRYFFLFFFFFFWRESSLVFLFFFFLAF 40
Score = 35.3 bits (81), Expect = 0.029
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 207 YKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFY 238
+ +F +FF FFFFFF+ F FFFF F+
Sbjct: 10 FPYFRYFFLFFFFFFWRESSLVFLFFFFLAFH 41
Score = 34.6 bits (79), Expect = 0.057
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFF 235
F Y +FF FFFFFF+ F FFFF F
Sbjct: 10 FPYFRYFFLFFFFFFWRESSLVFLFFFFLAF 40
Score = 34.2 bits (78), Expect = 0.081
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
+F +F +FF FFFF+F+ F FF+FL + ++
Sbjct: 9 YFPYFRYFFLFFFFFFWRESSLVFLFFFFLAFHEEVL 45
Score = 33.8 bits (77), Expect = 0.11
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 206 NYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFY 238
+Y +F +FF FFFFFF+ F FFFF +
Sbjct: 8 SYFPYFRYFFLFFFFFFWRESSLVFLFFFFLAF 40
>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like. Member
identified as possible enoyl reductase of the MDR
family. 2-enoyl thioester reductase (ETR) catalyzes the
NADPH-dependent dependent conversion of trans-2-enoyl
acyl carrier protein/coenzyme A (ACP/CoA) to
acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl
thioester reductase activity has been linked in Candida
tropicalis as essential in maintaining mitiochondrial
respiratory function. This ETR family is a part of the
medium chain dehydrogenase/reductase family, but lack
the zinc coordination sites characteristic of the
alcohol dehydrogenases in this family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. The N-terminal catalytic domain has a
distant homology to GroES. These proteins typically
form dimers (typically higher plants, mammals) or
tetramers (yeast, bacteria), and have 2 tightly bound
zinc atoms per subunit, a catalytic zinc at the active
site, and a structural zinc in a lobe of the catalytic
domain. NAD(H)-binding occurs in the cleft between the
catalytic and coenzyme-binding domains at the active
site, and coenzyme binding induces a conformational
closing of this cleft. Coenzyme binding typically
precedes and contributes to substrate binding. Candida
tropicalis enoyl thioester reductase (Etr1p) catalyzes
the NADPH-dependent reduction of trans-2-enoyl
thioesters in mitochondrial fatty acid synthesis. Etr1p
forms homodimers with each subunit containing a
nucleotide-binding Rossmann fold domain and a catalytic
domain.
Length = 339
Score = 37.9 bits (89), Expect = 0.012
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 86 AGLAFRVFHSTQYIRHPSKPLYTPEPDTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCP 145
A LA F P KP + + I G + G AIQ+ K G V + P
Sbjct: 132 AALAL--FQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTAS-P 188
Query: 146 VGVAKAYGLGADYVVDH 162
LGAD V D+
Sbjct: 189 KNFDLVKSLGADAVFDY 205
>gnl|CDD|220693 pfam10325, 7TM_GPCR_Srz, Serpentine type 7TM GPCR chemoreceptor
Srz. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srz is a solo families
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srz appear to be under
strong adaptive evolutionary pressure.
Length = 266
Score = 37.6 bits (88), Expect = 0.013
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFVIF 266
+F F F F FFF F F + +L +I +F +IF
Sbjct: 51 YFLFIFLIIFLILIFFFTKNSIIGFLFLLLLFLILYILYIIT-------QVFHLLIF 100
Score = 33.3 bits (77), Expect = 0.28
Identities = 11/48 (22%), Positives = 14/48 (29%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
L F K F + F F+ F F LL L+
Sbjct: 135 LVFVLKDIILFLLYVLSFSKDLSTEILELFYLITFIFLNILLFLSALL 182
Score = 29.9 bits (68), Expect = 3.4
Identities = 12/47 (25%), Positives = 14/47 (29%), Gaps = 11/47 (23%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFY-----FFFFFF------FFFYFF 240
F K+ F F F + Y F F F YFF
Sbjct: 66 FFTKNSIIGFLFLLLLFLILYILYIITQVFHLLIFLLAIQRFLIYFF 112
Score = 28.7 bits (65), Expect = 9.0
Identities = 13/88 (14%), Positives = 18/88 (20%), Gaps = 32/88 (36%)
Query: 207 YKHFFFFFFFFFFFFFFFF----------------------------FFYFFFFFFFFFY 238
+ + F F+ YF F F F
Sbjct: 2 FLLLLIVLLIIYLLIFPFYVYVFKLNRERDKKTLLFPITNHFYKMVKITYFLFIFLIIFL 61
Query: 239 FFYFLLLSQPLIQSCHSCPFSLFDFVIF 266
F +I F L F+I
Sbjct: 62 ILIFFFTKNSIIG----FLFLLLLFLIL 85
>gnl|CDD|144594 pfam01059, Oxidored_q5_N, NADH-ubiquinone oxidoreductase chain 4,
amino terminus.
Length = 110
Score = 35.2 bits (82), Expect = 0.017
Identities = 8/42 (19%), Positives = 10/42 (23%)
Query: 209 HFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
+ F + YF LS PLI
Sbjct: 26 TSTLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLI 67
>gnl|CDD|221704 pfam12676, DUF3796, Protein of unknown function (DUF3796). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 120 amino acids in length.
Length = 121
Score = 35.4 bits (82), Expect = 0.022
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYF 242
F F FF F F ++FF FF FF +F+
Sbjct: 12 FLGFLGFFTFSGDKVSFLFYFFAFFAFFSYFFE 44
Score = 32.7 bits (75), Expect = 0.17
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFF 231
L F F F+FF FF FF YFF
Sbjct: 16 LGFFTFSGDKVSFLFYFFAFFAFFSYFFE 44
Score = 30.8 bits (70), Expect = 0.74
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 206 NYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
N + F F F FF F F F+FF FF F
Sbjct: 2 NKLAYLGFLGFLGFLGFFTFSGDKVSFLFYFFAFFAFFS 40
Score = 30.8 bits (70), Expect = 0.88
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 206 NYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYF 242
Y F F F FF F F F+FF FF FF +
Sbjct: 5 AYLGFLGFLGFLGFFTFSGDKVSFLFYFFAFFAFFSY 41
>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.
Length = 131
Score = 35.4 bits (82), Expect = 0.024
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 124 GLAAIQVGKAYGL-TVFASVGCPVGVAKAYGLGADYVVDHT 163
GLAA+Q+ KA G V A + A LGAD+V+++
Sbjct: 3 GLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYR 43
>gnl|CDD|214436 MTH00151, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 565
Score = 37.5 bits (88), Expect = 0.024
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 218 FFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSL---FDFV--IFSN 268
F F + + F +F L+ L+ SC FS D+V FS
Sbjct: 7 SSFLLFSYSVFLFPLLGYFGLNGISLIFEWELLSVS-SCSFSFELVLDWVSLSFSG 61
Score = 30.2 bits (69), Expect = 4.1
Identities = 8/37 (21%), Positives = 9/37 (24%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F F FF + F F F F
Sbjct: 437 LFEGFSEEFFLPSYLKLLIGFVILLGLFLSFGFWDSG 473
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 37.5 bits (87), Expect = 0.024
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 357 FANQILSYGSELDADHPGFTDP--VYRARRKYFADLAFNYKHSILLMPEHNHVFPLLIQN 414
++ S S + D PGF +P + R F +L NY L + H+ F ++
Sbjct: 365 ISSSHHSIASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLER 424
Query: 415 CGYAEDNIP 423
YAE+ +
Sbjct: 425 --YAEEGVE 431
Score = 30.6 bits (69), Expect = 3.2
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 170 FANQILSYGSELDADHPGFTDP--VYRARRKYFADLAFNYKH 209
++ S S + D PGF +P + R F +L NY
Sbjct: 365 ISSSHHSIASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQ 406
>gnl|CDD|216883 pfam02118, Srg, Srg family chemoreceptor.
Length = 275
Score = 36.0 bits (84), Expect = 0.040
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSC 256
F + FF FF F ++Y + + L ++ L Q S
Sbjct: 59 LFLYVPPLCPFFLPFFKSPPGFLTIYYYLYNYFLHAKFLSQILLSV 104
>gnl|CDD|146748 pfam04276, DUF443, Protein of unknown function (DUF443). Family of
uncharacterized proteins.
Length = 197
Score = 35.7 bits (83), Expect = 0.043
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 206 NYKHFFFFFFFFFFF-FFFFFFFYFFF---------FFFFFFYFFYFLLLSQPLI 250
++K+FFF F + FF F F F + + F F L++ I
Sbjct: 133 SFKNFFFILFAYIFFGGFSILALSGFITIEVQNIIIFIGWIIFLFLFFLINMLSI 187
Score = 29.5 bits (67), Expect = 4.6
Identities = 13/49 (26%), Positives = 15/49 (30%), Gaps = 12/49 (24%)
Query: 198 KYFADLAFNYKHFFFFFFFFFFFFFFFF---------FFYFFFFFFFFF 237
K F + F Y FF F F F + F F FF
Sbjct: 135 KNFFFILFAY---IFFGGFSILALSGFITIEVQNIIIFIGWIIFLFLFF 180
>gnl|CDD|177218 MTH00162, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 89
Score = 33.2 bits (77), Expect = 0.054
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 11/44 (25%)
Query: 205 FNYKHFF-----------FFFFFFFFFFFFFFFFYFFFFFFFFF 237
KH FF F + FF + +F FF F
Sbjct: 20 SKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTF 63
Score = 31.3 bits (72), Expect = 0.33
Identities = 11/57 (19%), Positives = 15/57 (26%), Gaps = 18/57 (31%)
Query: 207 YKHFFFFFFFFFFFFFFFFF------------------FYFFFFFFFFFYFFYFLLL 245
F F FF F F+ F + FF + + LL
Sbjct: 2 MMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLL 58
Score = 30.5 bits (70), Expect = 0.47
Identities = 7/30 (23%), Positives = 8/30 (26%)
Query: 215 FFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
F F FF F + LL
Sbjct: 1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLL 30
Score = 27.0 bits (61), Expect = 7.7
Identities = 14/59 (23%), Positives = 15/59 (25%), Gaps = 26/59 (44%)
Query: 213 FFFFFFFFFFFFF--------------------------FFYFFFFFFFFFYFFYFLLL 245
F F FF FF F + FF Y YFLL
Sbjct: 1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLF 59
>gnl|CDD|214441 MTH00157, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 223
Score = 35.5 bits (83), Expect = 0.055
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 200 FADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFY-FLLLSQPLIQSCHSCPF 258
+L+ N+ F F F+ Y + F L P +
Sbjct: 14 SFNLSLNWLSTFLGLLFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFI 73
Query: 259 SLFDFVIFSN 268
SLF F++F+N
Sbjct: 74 SLFSFILFNN 83
>gnl|CDD|177156 MTH00093, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 77
Score = 32.9 bits (76), Expect = 0.057
Identities = 13/50 (26%), Positives = 16/50 (32%), Gaps = 13/50 (26%)
Query: 210 FFFFFFFFFFF-------------FFFFFFFYFFFFFFFFFYFFYFLLLS 246
F F FF F F +F +F FFYF+ S
Sbjct: 3 FLFISLLMLFFKYKRLIFILISLEFLMMSLFIYFMYFLNEMMFFYFMCFS 52
Score = 31.0 bits (71), Expect = 0.29
Identities = 15/63 (23%), Positives = 18/63 (28%), Gaps = 9/63 (14%)
Query: 213 FFFFFFFFFFFFFFFYFFFFFF---------FFFYFFYFLLLSQPLIQSCHSCPFSLFDF 263
F F FF + F F YF YFL C S S+
Sbjct: 1 MIFLFISLLMLFFKYKRLIFILISLEFLMMSLFIYFMYFLNEMMFFYFMCFSVISSVLGM 60
Query: 264 VIF 266
V+
Sbjct: 61 VVM 63
>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General
function prediction only].
Length = 339
Score = 36.0 bits (84), Expect = 0.058
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 116 IIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
++GA G G A+Q KA G V A + A LGAD+V++ +
Sbjct: 172 VVGA-GGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS 218
>gnl|CDD|177215 MTH00158, ATP8, ATP synthase F0 subunit 8; Provisional.
Length = 32
Score = 31.7 bits (73), Expect = 0.060
Identities = 7/23 (30%), Positives = 7/23 (30%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFF 232
F F F F YF F
Sbjct: 10 LILFILFLITFILFNILNYFIFI 32
Score = 30.9 bits (71), Expect = 0.12
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 217 FFFFFFFFFFFYFFFFFFFFFYF 239
F F F F +F +
Sbjct: 10 LILFILFLITFILFNILNYFIFI 32
Score = 30.1 bits (69), Expect = 0.20
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 220 FFFFFFFFYFFFFFFFFFYFFYF 242
F F F F YF +
Sbjct: 10 LILFILFLITFILFNILNYFIFI 32
Score = 29.7 bits (68), Expect = 0.24
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFF 236
F F F F +F F
Sbjct: 10 LILFILFLITFILFNILNYFIFI 32
Score = 29.3 bits (67), Expect = 0.39
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFF 233
F F F F +F F
Sbjct: 10 LILFILFLITFILFNILNYFIFI 32
Score = 29.0 bits (66), Expect = 0.47
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 213 FFFFFFFFFFFFFFFYFFFFFFF 235
F F F F +F F
Sbjct: 10 LILFILFLITFILFNILNYFIFI 32
Score = 28.6 bits (65), Expect = 0.61
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 219 FFFFFFFFFYFFFFFFFFFYFF 240
F F F F ++ F
Sbjct: 10 LILFILFLITFILFNILNYFIF 31
Score = 28.6 bits (65), Expect = 0.76
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 212 FFFFFFFFFFFFFFFFYFFFFFF 234
F F F F +F F
Sbjct: 10 LILFILFLITFILFNILNYFIFI 32
Score = 28.2 bits (64), Expect = 0.89
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 215 FFFFFFFFFFFFFYFFFFFFFFF 237
F F F + +F F
Sbjct: 10 LILFILFLITFILFNILNYFIFI 32
Score = 28.2 bits (64), Expect = 1.00
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 218 FFFFFFFFFFYFFFFFFFFFYFF 240
F F + F +F F
Sbjct: 10 LILFILFLITFILFNILNYFIFI 32
Score = 25.9 bits (58), Expect = 5.9
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 223 FFFFFYFFFFFFFFFYFFYFL 243
F F F F YF+
Sbjct: 10 LILFILFLITFILFNILNYFI 30
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 36.2 bits (84), Expect = 0.069
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 16/80 (20%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFF----------------FYFFYFLLLSQP 248
FN K F+ F F F + F F +L+
Sbjct: 774 FNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAFTVLVLIQLL 833
Query: 249 LIQSCHSCPFSLFDFVIFSN 268
L + S ++FSN
Sbjct: 834 LTLAVRSRGRPFLSSLLFSN 853
>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase.
Putative enoyl reductase of polyketide synthase.
Polyketide synthases produce polyketides in step by step
mechanism that is similar to fatty acid synthesis. Enoyl
reductase reduces a double to single bond. Erythromycin
is one example of a polyketide generated by 3 complex
enzymes (megasynthases). 2-enoyl thioester reductase
(ETR) catalyzes the NADPH-dependent dependent conversion
of trans-2-enoyl acyl carrier protein/coenzyme A
(ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis.
2-enoyl thioester reductase activity has been linked in
Candida tropicalis as essential in maintaining
mitiochondrial respiratory function. This ETR family is
a part of the medium chain dehydrogenase/reductase
family, but lack the zinc coordination sites
characteristic of the alcohol dehydrogenases in this
family. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes or ketones. Alcohol dehydrogenase in the liver
converts ethanol and NAD+ to acetaldehyde and NADH,
while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. The N-terminal catalytic domain has a
distant homology to GroES. These proteins typically
form dimers (typically higher plants, mammals) or
tetramers (yeast, bacteria), and have 2 tightly bound
zinc atoms per subunit, a catalytic zinc at the active
site, and a structural zinc in a lobe of the catalytic
domain. NAD(H) binding occurs in the cleft between the
catalytic and coenzyme-binding domains, at the active
site, and coenzyme binding induces a conformational
closing of this cleft. Coenzyme binding typically
precedes and contributes to substrate binding.
Length = 293
Score = 35.2 bits (82), Expect = 0.072
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVG 143
+++ I A G G AAIQ+ + G VFA+VG
Sbjct: 110 ESVLIHAAAGGVGQAAIQLAQHLGAEVFATVG 141
>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 326
Score = 35.6 bits (83), Expect = 0.074
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
T+ I G G G A+Q+ KA G V+A+ A A LGAD ++ +
Sbjct: 146 QTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAAFARSLGADPIIYYR 196
>gnl|CDD|222228 pfam13567, DUF4131, Domain of unknown function (DUF4131). This
domain is frequently found to the N-terminus of the
Competence domain, pfam03772.
Length = 173
Score = 34.3 bits (79), Expect = 0.095
Identities = 1/48 (2%), Positives = 4/48 (8%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCP 257
+ + + L
Sbjct: 27 LLLLLYRRKRRRTLLLLLLLLLLGGLGLGLRAYRRAANDLSHLLDGKE 74
Score = 32.4 bits (74), Expect = 0.43
Identities = 2/43 (4%), Positives = 4/43 (9%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQS 252
+ L L +
Sbjct: 21 ALLALLLLLLLYRRKRRRTLLLLLLLLLLGGLGLGLRAYRRAA 63
Score = 30.8 bits (70), Expect = 1.2
Identities = 1/43 (2%), Positives = 3/43 (6%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQS 252
+ L +
Sbjct: 23 LALLLLLLLYRRKRRRTLLLLLLLLLLGGLGLGLRAYRRAAND 65
Score = 28.9 bits (65), Expect = 6.3
Identities = 1/36 (2%), Positives = 2/36 (5%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
+ L
Sbjct: 18 LLLALLALLLLLLLYRRKRRRTLLLLLLLLLLGGLG 53
Score = 28.5 bits (64), Expect = 7.2
Identities = 1/31 (3%), Positives = 3/31 (9%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFF 233
L + +
Sbjct: 29 LLLYRRKRRRTLLLLLLLLLLGGLGLGLRAY 59
Score = 28.1 bits (63), Expect = 9.9
Identities = 2/32 (6%), Positives = 4/32 (12%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFF 234
L Y+ +
Sbjct: 28 LLLLYRRKRRRTLLLLLLLLLLGGLGLGLRAY 59
>gnl|CDD|233317 TIGR01218, Gpos_tandem_5TM, tandem five-transmembrane protein.
Members of this family of proteins, with average length
of 210, have no invariant residues but five predicted
transmembrane segments. Strangely, most members occur in
groups of consecutive paralogous genes. A striking
example is a set of eleven encoded consecutively,
head-to-tail, in Staphylococcus aureus strain COL.
Length = 208
Score = 34.5 bits (80), Expect = 0.097
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 193 YRARRKYFADLAFNYKHFFFFFF-FFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQ 251
+ ++K + L N K + F + F F Y FF F F+ F+ I
Sbjct: 118 KKNKKKLYNRLPNNNKRYKIKIRPTSFKYRIFILFLYIFFLGLSIFLFYLFINNGGENII 177
Query: 252 SCHSCPFSLFDFVIFSN 268
+ LF F++ +
Sbjct: 178 LVINGIIFLFFFLLINM 194
Score = 31.8 bits (73), Expect = 0.85
Identities = 10/46 (21%), Positives = 12/46 (26%), Gaps = 14/46 (30%)
Query: 210 FFFFFFFFFFFFFFFFFFY--------------FFFFFFFFFYFFY 241
F + FF F F+ F F FFF
Sbjct: 152 FLYIFFLGLSIFLFYLFINNGGENIILVINGIIFLFFFLLINMLPI 197
Score = 31.4 bits (72), Expect = 1.1
Identities = 13/53 (24%), Positives = 16/53 (30%), Gaps = 16/53 (30%)
Query: 208 KHFFFFFFFFFFF-FFFFFFFYFFF---------------FFFFFFYFFYFLL 244
K+ F F + FF F FY F F FFF +
Sbjct: 145 KYRIFILFLYIFFLGLSIFLFYLFINNGGENIILVINGIIFLFFFLLINMLPI 197
Score = 28.3 bits (64), Expect = 8.8
Identities = 8/55 (14%), Positives = 20/55 (36%)
Query: 192 VYRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
+ + +K + N + F + F + + FF F ++L ++
Sbjct: 116 INKKNKKKLYNRLPNNNKRYKIKIRPTSFKYRIFILFLYIFFLGLSIFLFYLFIN 170
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 35.3 bits (81), Expect = 0.10
Identities = 7/58 (12%), Positives = 9/58 (15%)
Query: 193 YRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
Y L + F F F L L+
Sbjct: 287 VLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALLL 344
Score = 32.2 bits (73), Expect = 0.94
Identities = 6/54 (11%), Positives = 9/54 (16%)
Query: 193 YRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
+ + A + F F F LL
Sbjct: 285 LQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSG 338
Score = 31.8 bits (72), Expect = 1.1
Identities = 8/54 (14%), Positives = 11/54 (20%)
Query: 193 YRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
R + + F + F F F LLL
Sbjct: 281 ARGGLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLI 334
Score = 30.7 bits (69), Expect = 2.9
Identities = 8/62 (12%), Positives = 10/62 (16%), Gaps = 1/62 (1%)
Query: 186 PGFTDPVYRARRKY-FADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
P P+ R L F FLL
Sbjct: 295 PALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALLLANVILAAFLL 354
Query: 245 LS 246
+
Sbjct: 355 IL 356
Score = 29.5 bits (66), Expect = 6.3
Identities = 2/37 (5%), Positives = 4/37 (10%)
Query: 212 FFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQP 248
F+ + P
Sbjct: 10 VFWGLILILLLILSIITLLLGYLLLVLPLSRPRKKLP 46
>gnl|CDD|239583 cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase
(Delta6-FADS)-like CD includes the integral-membrane
enzymes: delta-4, delta-5, delta-6, delta-8,
delta-8-sphingolipid, and delta-11 desaturases found in
vertebrates, higher plants, fungi, and bacteria. These
desaturases are required for the synthesis of highly
unsaturated fatty acids (HUFAs), which are mainly
esterified into phospholipids and contribute to
maintaining membrane fluidity. While HUFAs may be
required for cold tolerance in bacteria, plants and
fish, the primary role of HUFAs in mammals is cell
signaling. These enzymes are described as front-end
desaturases because they introduce a double bond between
the pre-exiting double bond and the carboxyl (front) end
of the fatty acid. Various substrates are involved, with
both acyl-coenzyme A (CoA) and acyl-lipid desaturases
present in this CD. Acyl-lipid desaturases are localized
in the membranes of cyanobacterial thylakoid, plant
endoplasmic reticulum (ER), and plastid; and acyl-CoA
desaturases are present in ER membrane. ER-bound plant
acyl-lipid desaturases and acyl-CoA desaturases require
cytochrome b5 as an electron donor. Most of the
eukaryotic desaturase domains have an adjacent
N-terminal cytochrome b5-like domain. This domain family
has extensive hydrophobic regions that would be capable
of spanning the membrane bilayer at least twice.
Comparison of sequences also reveals the existence of
three regions of conserved histidine cluster motifs that
contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH.
These histidine residues are reported to be
catalytically essential and proposed to be the ligands
for the iron atoms contained within the homolog,
stearoyl CoA desaturase.
Length = 204
Score = 34.2 bits (79), Expect = 0.13
Identities = 8/56 (14%), Positives = 12/56 (21%), Gaps = 1/56 (1%)
Query: 185 HPGFTDPVYRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFF 240
P + Y+HF+FF F + F
Sbjct: 74 LPLLARSEPAFGKDQKKRFLHRYQHFYFFPL-LALLLLAFLVVQLAGGLWLAVVFQ 128
Score = 31.8 bits (73), Expect = 0.64
Identities = 8/39 (20%), Positives = 11/39 (28%)
Query: 208 KHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
K F + F+FF F L L+
Sbjct: 86 KDQKKRFLHRYQHFYFFPLLALLLLAFLVVQLAGGLWLA 124
>gnl|CDD|177154 MTH00091, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 273
Score = 34.5 bits (80), Expect = 0.13
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 213 FFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
FF FFF F FF F + L+LS
Sbjct: 110 FFSKNFFFLLLFGLLICFFQMFLLKSYKNLLILS 143
Score = 34.5 bits (80), Expect = 0.15
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 212 FFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F FF FF+ F +F FLL S
Sbjct: 101 LPFLLVLLQFFSKNFFFLLLFGLLICFFQMFLLKS 135
Score = 34.1 bits (79), Expect = 0.18
Identities = 9/37 (24%), Positives = 11/37 (29%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F FF F F F F+ + LS
Sbjct: 210 IFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLS 246
Score = 32.9 bits (76), Expect = 0.44
Identities = 11/52 (21%), Positives = 14/52 (26%), Gaps = 14/52 (26%)
Query: 209 HFFFFFFFFFFFFFFFFFFYFFFFFFFF--------------FYFFYFLLLS 246
FF F F F F+ +FF+FL L
Sbjct: 217 LKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLM 268
Score = 32.5 bits (75), Expect = 0.49
Identities = 9/35 (25%), Positives = 11/35 (31%)
Query: 209 HFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
F FF FFF F F+ + L
Sbjct: 99 QKLPFLLVLLQFFSKNFFFLLLFGLLICFFQMFLL 133
Score = 32.1 bits (74), Expect = 0.78
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 13/55 (23%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFF-------------FFFFFYFFYFLLLS 246
FF F F F ++ FFF+F +LLS
Sbjct: 217 LKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLS 271
Score = 32.1 bits (74), Expect = 0.80
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 23/66 (34%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFF-----------------------FYFFFFFFFFFYF 239
L F K+FFF F FF F F+F FF FF +F
Sbjct: 108 LQFFSKNFFFLLLFGLLICFFQMFLLKSYKNLLILSSTESFNWLILSFFFSFFNVFFLFF 167
Query: 240 FYFLLL 245
+YFLL+
Sbjct: 168 YYFLLM 173
Score = 31.0 bits (71), Expect = 1.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYF 242
F + FFF FF FF +F++F F F
Sbjct: 148 FNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKF 180
Score = 30.2 bits (69), Expect = 3.3
Identities = 12/42 (28%), Positives = 12/42 (28%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
N FF F FF F F F L LS
Sbjct: 198 MNLPFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSLS 239
Score = 29.8 bits (68), Expect = 3.6
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 209 HFFFFFFFFFFFFFFFFFF-------YFFFFFFFFFYFFYFLLLSQPLI 250
HF+ F F + +F + FF F+FLLL LI
Sbjct: 77 HFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLI 125
Score = 29.1 bits (66), Expect = 6.8
Identities = 13/67 (19%), Positives = 17/67 (25%), Gaps = 31/67 (46%)
Query: 210 FFFFFFFFFFFFFFFFFFYFF-------------------------------FFFFFFFY 238
F FFF F FF F FF FF+++
Sbjct: 111 FSKNFFFLLLFGLLICFFQMFLLKSYKNLLILSSTESFNWLILSFFFSFFNVFFLFFYYF 170
Query: 239 FFYFLLL 245
L+
Sbjct: 171 LLMLFLI 177
Score = 28.7 bits (65), Expect = 8.3
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
L+F + F FF FF++F F F + + LL
Sbjct: 153 LSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVSWETLL 195
>gnl|CDD|217378 pfam03124, EXS, EXS family. We have named this region the EXS
family after (ERD1, XPR1, and SYG1). This family
includes C-terminus portions from the SYG1 G-protein
associated signal transduction protein from
Saccharomyces cerevisiae, and sequences that are thought
to be murine leukaemia virus (MLV) receptors (XPR1).
N-terminus portions from these proteins are aligned in
the SPX pfam03105 family. The previously noted
similarity between SYG1 and MLV receptors over their
whole sequences is thus borne out in pfam03105 and this
family. While the N-termini aligned in pfam03105 are
thought to be involved in signal transduction, the role
of the C-terminus sequences aligned in this family is
not known. This region of similarity contains several
predicted transmembrane helices. This family also
includes the ERD1 (ERD: ER retention defective) yeast
proteins. ERD1 proteins are involved in the localisation
of endogenous endoplasmic reticulum (ER) proteins. erd1
null mutants secrete such proteins even though they
possess the C-terminal HDEL ER lumen localisation label
sequence. In addition, null mutants also exhibit defects
in the Golgi-dependent processing of several
glycoproteins, which led to the suggestion that the
sorting of luminal ER proteins actually occurs in the
Golgi, with subsequent return of these proteins to the
ER via `salvage' vesicles.
Length = 337
Score = 34.5 bits (80), Expect = 0.15
Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 2/62 (3%)
Query: 206 NYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFVI 265
+++ FF + F Y ++ + PL+ F I
Sbjct: 46 SHRELLELASFFTVLWLLSFLLYLLLEHLELTKPASWVQV--PLVLLLIVLLILFLPFNI 103
Query: 266 FS 267
F
Sbjct: 104 FY 105
>gnl|CDD|190882 pfam04144, SCAMP, SCAMP family. In vertebrates, secretory carrier
membrane proteins (SCAMPs) 1-3 constitute a family of
putative membrane-trafficking proteins composed of
cytoplasmic N-terminal sequences with NPF repeats, four
central transmembrane regions (TMRs), and a cytoplasmic
tail. SCAMPs probably function in endocytosis by
recruiting EH-domain proteins to the N-terminal NPF
repeats but may have additional functions mediated by
their other sequences.
Length = 177
Score = 33.7 bits (78), Expect = 0.15
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 10/42 (23%)
Query: 191 PVYRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFF 232
PVY+A R D +FN FF+FFF FF F
Sbjct: 89 PVYKAFRT---DSSFN-------FFWFFFIFFLHILFCIIQA 120
>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional.
Length = 404
Score = 34.7 bits (81), Expect = 0.15
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 271 DEVGALAKTLKLFKKHNVNLLHIE-SRSSTRIENNY---EFMVECAPGGDLSSVIESLR 325
D G LAK L + + N++ ++ R S + E +E + ++++LR
Sbjct: 336 DRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALR 394
>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. This group has the characteristic
catalytic and structural zinc sites of the
zinc-dependent alcohol dehydrogenases. Alcohol
dehydrogenase in the liver converts ethanol and NAD+ to
acetaldehyde and NADH, while in yeast and some other
microorganisms ADH catalyzes the conversion acetaldehyde
to ethanol in alcoholic fermentation. ADH is a member of
the medium chain alcohol dehydrogenase family (MDR),
which has a NAD(P)(H)-binding domain in a Rossmann fold
of a beta-alpha form. The NAD(H)-binding region is
comprised of 2 structurally similar halves, each of
which contacts a mononucleotide. A GxGxxG motif after
the first mononucleotide contact half allows the close
contact of the coenzyme with the ADH backbone. The
N-terminal catalytic domain has a distant homology to
GroES. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit, a
catalytic zinc at the active site and a structural zinc
in a lobe of the catalytic domain. NAD(H)-binding occurs
in the cleft between the catalytic and coenzyme-binding
domains at the active site, and coenzyme binding induces
a conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 345
Score = 34.5 bits (80), Expect = 0.16
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
+ + + G G GL+A+ + A G V A + A LGA V+ +
Sbjct: 167 EWVAVHGCG-GVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNAS 217
>gnl|CDD|222059 pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 206
Score = 33.8 bits (78), Expect = 0.17
Identities = 8/45 (17%), Positives = 11/45 (24%)
Query: 202 DLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
D K+ F F F FF +L+
Sbjct: 6 DFYLIKKYLKILLIIFLLLLIVIFIFLNEDGSIFFIILLILILIM 50
Score = 32.2 bits (74), Expect = 0.62
Identities = 7/46 (15%), Positives = 13/46 (28%)
Query: 208 KHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSC 253
K + F F + FF L+L ++ +
Sbjct: 11 KKYLKILLIIFLLLLIVIFIFLNEDGSIFFIILLILILIMLVLTTF 56
Score = 31.8 bits (73), Expect = 0.83
Identities = 7/40 (17%), Positives = 9/40 (22%)
Query: 206 NYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
K F F F FF +L+
Sbjct: 13 YLKILLIIFLLLLIVIFIFLNEDGSIFFIILLILILIMLV 52
Score = 31.5 bits (72), Expect = 0.94
Identities = 7/42 (16%), Positives = 8/42 (19%), Gaps = 3/42 (7%)
Query: 206 NYKHFFFFFFFFFFFFFFFFF---FYFFFFFFFFFYFFYFLL 244
Y F F F FF +L
Sbjct: 12 KYLKILLIIFLLLLIVIFIFLNEDGSIFFIILLILILIMLVL 53
Score = 28.8 bits (65), Expect = 8.4
Identities = 10/48 (20%), Positives = 12/48 (25%), Gaps = 6/48 (12%)
Query: 210 FFFFFFFFFFFFF------FFFFFYFFFFFFFFFYFFYFLLLSQPLIQ 251
F ++ F F F F F L L LI
Sbjct: 129 IFGAILLPLYYKFGYEKGRIILIIIIFLIIFIIFAIFKILNLILSLIN 176
Score = 28.4 bits (64), Expect = 9.5
Identities = 5/36 (13%), Positives = 7/36 (19%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
F F F F ++L
Sbjct: 151 IIIIFLIIFIIFAIFKILNLILSLINNSSLLLIIIL 186
Score = 28.4 bits (64), Expect = 9.5
Identities = 5/37 (13%), Positives = 6/37 (16%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F F F +F S
Sbjct: 21 FLLLLIVIFIFLNEDGSIFFIILLILILIMLVLTTFS 57
>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the
cleft between the catalytic and coenzyme-binding
domains at the active site, and coenzyme binding induces
a conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 367
Score = 34.3 bits (79), Expect = 0.18
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGC-PVGVAKAYGLGADYVVD 161
+T+ +IG G G +AIQ+ KA+G + +V +AKA LGA + V+
Sbjct: 189 ETVAVIGVG-GVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVN 238
>gnl|CDD|177241 MTH00193, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 306
Score = 34.4 bits (80), Expect = 0.18
Identities = 8/38 (21%), Positives = 10/38 (26%)
Query: 207 YKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
Y F F F F+ F F F+
Sbjct: 230 YSSILFMSMLFVLMFLGGDLLSLLFYLKLLFISFLFIW 267
Score = 33.6 bits (78), Expect = 0.29
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
F F F F Y + +F FF F FL+
Sbjct: 152 LLSFIFLIGSFNLLDFMNYQKYIWFIFFSFPLFLIW 187
Score = 33.2 bits (77), Expect = 0.33
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
F F F F + Y +F FF F F +
Sbjct: 155 FIFLIGSFNLLDFMNYQKYIWFIFFSFPLFLIWF 188
Score = 32.4 bits (75), Expect = 0.68
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 206 NYKHFFF--FFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
NY ++F F F + + Y F F +FL S
Sbjct: 69 NYLLYYFSPVFSLFLSLLIWLIYPYLFNLISFNLGILFFLCCS 111
Score = 32.0 bits (74), Expect = 0.92
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPL 249
F F + F + + +F+ S PL
Sbjct: 148 LALILLSFIFLIGSFNLLDFMNYQKYIWFIFFSFPL 183
Score = 30.9 bits (71), Expect = 1.8
Identities = 7/35 (20%), Positives = 9/35 (25%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
F F F F+ F FL +
Sbjct: 232 SILFMSMLFVLMFLGGDLLSLLFYLKLLFISFLFI 266
Score = 30.9 bits (71), Expect = 2.0
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
F F F F + + +F +F + L L
Sbjct: 150 LILLSFIFLIGSFNLLDFMNYQKYIWFIFFSFPLFL 185
Score = 30.1 bits (69), Expect = 3.3
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
F F F F + + +F +F
Sbjct: 148 LALILLSFIFLIGSFNLLDFMNYQKYIWFIFFSF 181
Score = 29.0 bits (66), Expect = 9.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFF 232
FN F + + +F FF F F +F
Sbjct: 162 FNLLDFMNYQKYIWFIFFSFPLFLIWFV 189
>gnl|CDD|177153 MTH00090, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 284
Score = 34.1 bits (79), Expect = 0.18
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSL 260
F + F F F F + FL++ I + PF
Sbjct: 142 FSLYLLSIMLHNNSFSFVSSFSLSLFVIYLPFLIMI---IAELNRAPFDF 188
Score = 32.6 bits (75), Expect = 0.55
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 202 DLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFF-------YFLLLS 246
DL+F F + +F +FF F F + +F Y L+S
Sbjct: 64 DLSFLLVPGVSFVVMYLEWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLIS 115
Score = 29.5 bits (67), Expect = 5.6
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFF 236
FF FF F F + F F
Sbjct: 221 FFSVLTSVLFFKFSFLMLFLIFSLLIF 247
>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent
hydrolase [General function prediction only].
Length = 555
Score = 34.7 bits (80), Expect = 0.18
Identities = 11/63 (17%), Positives = 15/63 (23%), Gaps = 14/63 (22%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFF--------------FFFFFFYFFYFLLLSQP 248
++F F FF F F + LLLS P
Sbjct: 8 PKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLLLLSFP 67
Query: 249 LIQ 251
+
Sbjct: 68 RLL 70
Score = 32.7 bits (75), Expect = 0.65
Identities = 12/61 (19%), Positives = 15/61 (24%), Gaps = 4/61 (6%)
Query: 208 KHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFVIFS 267
+YF F F+ FL+ S L S F L V
Sbjct: 2 NLTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLS---FSFSFLLA-LVFAF 57
Query: 268 N 268
Sbjct: 58 L 58
Score = 29.3 bits (66), Expect = 6.8
Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 14/75 (18%)
Query: 195 ARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFF------FFFFFF------FYF--F 240
+ F + + F F F F F YF F
Sbjct: 31 FFLQVFLINSLDLSFSFSFLLALVFAFLLLLLLLSFPRLLKPLAGVLSLVSAAASYFAYF 90
Query: 241 YFLLLSQPLIQSCHS 255
Y +++ + ++ +
Sbjct: 91 YGIIIDKNMLLNVFE 105
>gnl|CDD|216181 pfam00902, TatC, Sec-independent protein translocase protein
(TatC). The bacterial Tat system has a remarkable
ability to transport folded proteins even enzyme
complexes across the cytoplasmic membrane. It is
structurally and mechanistically similar to the Delta
pH-driven thylakoidal protein import pathway. A
functional Tat system or Delta pH-dependent pathway
requires three integral membrane proteins: TatA/Tha4,
TatB/Hcf106 and TatC/cpTatC. The TatC protein is
essential for the function of both pathways. It might be
involved in twin-arginine signal peptide recognition,
protein translocation and proton translocation. Sequence
analysis predicts that TatC contains six transmembrane
helices (TMHs), and experimental data confirmed that N-
and C-termini of TatC or cpTatC are exposed to the
cytoplasmic or stromal face of the membrane. The
cytoplasmic N-terminus and the first cytoplasmic loop
region of the Escherichia coli TatC protein are
essential for protein export. At least two TatC
molecules co-exist within each Tat translocon.
Length = 212
Score = 33.6 bits (78), Expect = 0.19
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 207 YKH-FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
YK+ F F F F F F +F FLL
Sbjct: 91 YKNERRFLLPFVFASFLLFLLGAAFAYFVVLPIALKFLL 129
>gnl|CDD|214442 MTH00160, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 335
Score = 34.0 bits (79), Expect = 0.19
Identities = 6/41 (14%), Positives = 10/41 (24%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
L +N + F F + F + L
Sbjct: 295 LNYNKNKWNLKKKKNKFSLILNFLSFISLFGLILSSLLFLL 335
Score = 31.3 bits (72), Expect = 1.4
Identities = 10/49 (20%), Positives = 14/49 (28%)
Query: 196 RRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
R Y + + K+ + F F F F FLL
Sbjct: 287 RISYSSLMLNYNKNKWNLKKKKNKFSLILNFLSFISLFGLILSSLLFLL 335
Score = 30.2 bits (69), Expect = 3.3
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 6/65 (9%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFD 262
+ + +F + F F FF F ++ F LF
Sbjct: 184 SSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIK-----FLLF- 237
Query: 263 FVIFS 267
+ S
Sbjct: 238 LNLLS 242
Score = 29.4 bits (67), Expect = 5.6
Identities = 3/37 (8%), Positives = 9/37 (24%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
+F+ + + + + LS
Sbjct: 283 YFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFLS 319
>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR). 2-enoyl thioester
reductase (ETR) catalyzes the NADPH-dependent conversion
of trans-2-enoyl acyl carrier protein/coenzyme A
(ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis.
2-enoyl thioester reductase activity has been linked in
Candida tropicalis as essential in maintaining
mitiochondrial respiratory function. This ETR family is
a part of the medium chain dehydrogenase/reductase
family, but lack the zinc coordination sites
characteristic of the alcohol dehydrogenases in this
family. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. The N-terminal catalytic domain has a
distant homology to GroES. These proteins typically form
dimers (typically higher plants, mammals) or tetramers
(yeast, bacteria), and have 2 tightly bound zinc atoms
per subunit, a catalytic zinc at the active site, and a
structural zinc in a lobe of the catalytic domain.
NAD(H) binding occurs in the cleft between the catalytic
and coenzyme-binding domains, at the active site, and
coenzyme binding induces a conformational closing of
this cleft. Coenzyme binding typically precedes and
contributes to substrate binding. Candida tropicalis
enoyl thioester reductase (Etr1p) catalyzes the
NADPH-dependent reduction of trans-2-enoyl thioesters in
mitochondrial fatty acid synthesis. Etr1p forms
homodimers, with each subunit containing a
nucleotide-binding Rossmann fold domain and a catalytic
domain.
Length = 341
Score = 34.1 bits (79), Expect = 0.21
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 118 GANRGNGLAAIQVGKAYGLTVFASV--GCPVGVAKA--YGLGADYVV 160
GAN G A IQ+ K G+ V + K LGAD+V+
Sbjct: 154 GANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVL 200
>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA
dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase,
and other MDR family members. This group contains
enzymes of the zinc-dependent alcohol dehydrogenase
family, including members (aka MDR) identified as
6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and
N-benzyl-3-pyrrolidinol dehydrogenase.
6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase
catalyzes the conversion of
6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to
6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This
group displays the characteristic catalytic and
structural zinc sites of the zinc-dependent alcohol
dehydrogenases. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the cleft
between the catalytic and coenzyme-binding domains at
the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 338
Score = 34.1 bits (79), Expect = 0.21
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVD 161
+T+ +IG G GL A+Q+ KA G V A + A LGAD V++
Sbjct: 167 ETVLVIGLG-GLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLN 215
>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the
RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found
C-terminal of the RelA/SpoT domains. Enzymes of the
Rel/Spo family enable bacteria to survive prolonged
periods of nutrient limitation by controlling
guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp)
production and subsequent rRNA repression (stringent
response). Both the synthesis of (p)ppGpp from ATP and
GDP(GTP), and its hydrolysis to GDP(GTP) and
pyrophosphate, are catalyzed by Rel/Spo proteins. In
Escherichia coli and its close relatives, the metabolism
of (p)ppGpp is governed by two homologous proteins, RelA
and SpoT. The RelA protein catalyzes (p)ppGpp synthesis
in a reaction requiring its binding to ribosomes bearing
codon-specified uncharged tRNA. The major role of the
SpoT protein is the breakdown of (p)ppGpp by a
manganese-dependent (p)ppGpp pyrophosphohydrolase
activity. Although the stringent response appears to be
tightly regulated by these two enzymes in E. coli, a
bifunctional Rel/Spo protein has been discovered in most
gram-positive organisms studied so far. These
bifunctional Rel/Spo homologs (rsh) appear to modulate
(p)ppGpp levels through two distinct active sites that
are controlled by a reciprocal regulatory mechanism
ensuring inverse coupling of opposing activities. In
studies with the Streptococcus equisimilis Rel/Spo
homolog, the C-terminal domain appears to be involved in
this reciprocal regulation of the two opposing catalytic
activities present in the N-terminal domain, ensuring
that both synthesis and degradation activities are not
coinduced. Members of this CD belong to the superfamily
of ACT regulatory domains.
Length = 71
Score = 31.3 bits (72), Expect = 0.22
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 270 QDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYE--FMVECAPGGDLSSVIESLRS 326
D G LA + + +N+L + +R T + +E L+ ++ LR
Sbjct: 6 IDRPGLLADITTVIAEEKINILSVNTR--TDDDGLATIRLTLEVRDLEHLARIMRKLRQ 62
>gnl|CDD|214458 MTH00206, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 450
Score = 33.8 bits (78), Expect = 0.31
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 204 AFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPL-IQSCHSCPFSLF 261
+ ++ FF F F +F + + F + + LS PL I SC P
Sbjct: 19 KWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSNLYLSYDPLSSPLVILSCWLLPLMFL 77
Score = 29.5 bits (67), Expect = 7.0
Identities = 21/123 (17%), Positives = 33/123 (26%), Gaps = 34/123 (27%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFF-------FYFFF-------FFFFFF------------- 237
N + + F FF FY F
Sbjct: 88 INRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYY 147
Query: 238 YFFYFLLLSQPLI-------QSCHSCPFSLFDFVIFSNHQDEVGALAKTLKLFKKHNVNL 290
+ FY L+ S PL+ S S + F + + + LA L K +
Sbjct: 148 FLFYTLIGSLPLLIALLFLQNSLGSLSLYILYFSKLTTWNNNLWWLACILAFLVKLPLYG 207
Query: 291 LHI 293
+H+
Sbjct: 208 VHL 210
>gnl|CDD|214437 MTH00152, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 163
Score = 32.6 bits (75), Expect = 0.31
Identities = 14/48 (29%), Positives = 17/48 (35%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
Y L+ N F F FF F F FFFF + + L
Sbjct: 67 YVVSLSPNPLFGSNFKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSL 114
Score = 29.5 bits (67), Expect = 3.4
Identities = 14/47 (29%), Positives = 14/47 (29%)
Query: 221 FFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFVIFS 267
F F F FF F F L S SLFD S
Sbjct: 75 PLFGSNFKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGS 121
>gnl|CDD|133462 cd06852, GT_MraY, Phospho-N-acetylmuramoyl-pentapeptide-transferase
(mraY) is an enzyme responsible for the formation of the
first lipid intermediate in the synthesis of bacterial
cell wall peptidoglycan. It catalyzes the formation of
undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-
pentapeptide from UDP-MurNAc-pentapeptide and
undecaprenyl-phosphate. It is an integral membrane
protein with possibly ten transmembrane domains.
Length = 280
Score = 33.2 bits (77), Expect = 0.32
Identities = 14/75 (18%), Positives = 19/75 (25%), Gaps = 16/75 (21%)
Query: 194 RARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSC 253
AR+K F ++F FF Y
Sbjct: 69 SARQKLLLQFLIAI--VFALLLYYFNGSGTLITLPFFKNGLIDLGILYI----------- 115
Query: 254 HSCPFSLFDFVIFSN 268
PF++F V SN
Sbjct: 116 ---PFAIFVIVGSSN 127
>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR). Quinone
oxidoreductase (QOR) and 2-haloacrylate reductase. QOR
catalyzes the conversion of a quinone + NAD(P)H to a
hydroquinone + NAD(P)+. Quinones are cyclic diones
derived from aromatic compounds. Membrane bound QOR
actin the respiratory chains of bacteria and
mitochondria, while soluble QOR acts to protect from
toxic quinones (e.g. DT-diaphorase) or as a soluble
eye-lens protein in some vertebrates (e.g.
zeta-crystalin). QOR reduces quinones through a
semi-quinone intermediate via a NAD(P)H-dependent single
electron transfer. QOR is a member of the medium chain
dehydrogenase/reductase family, but lacks the
zinc-binding sites of the prototypical alcohol
dehydrogenases of this group. 2-haloacrylate reductase,
a member of this subgroup, catalyzes the NADPH-dependent
reduction of a carbon-carbon double bond in
organohalogen compounds. Although similar to QOR,
Burkholderia 2-haloacrylate reductase does not act on
the quinones 1,4-benzoquinone and 1,4-naphthoquinone.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES.
These proteins typically form dimers (typically higher
plants, mammals) or tetramers (yeast, bacteria), and
have 2 tightly bound zinc atoms per subunit, a catalytic
zinc at the active site and a structural zinc in a lobe
of the catalytic domain. NAD(H) binding occurs in the
cleft between the catalytic and coenzyme-binding domains
at the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 320
Score = 33.2 bits (77), Expect = 0.38
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
DT+ + A G GL Q KA G TV +V A GAD+V+++
Sbjct: 138 DTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYR 189
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 33.1 bits (76), Expect = 0.40
Identities = 6/34 (17%), Positives = 9/34 (26%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
F FF F ++ Y +L
Sbjct: 169 LLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYL 202
Score = 32.3 bits (74), Expect = 0.77
Identities = 7/45 (15%), Positives = 9/45 (20%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCH 254
F FF F Y+ L L +
Sbjct: 163 GLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLG 207
Score = 31.9 bits (73), Expect = 1.0
Identities = 8/41 (19%), Positives = 10/41 (24%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
F FF + +Y LL PL
Sbjct: 161 ILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLY 201
Score = 31.5 bits (72), Expect = 1.4
Identities = 6/43 (13%), Positives = 9/43 (20%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQS 252
F FF F ++ L +Q
Sbjct: 162 LGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQE 204
Score = 30.7 bits (70), Expect = 2.7
Identities = 3/37 (8%), Positives = 4/37 (10%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F F +F
Sbjct: 156 FLILAILGLLLALLLLFLLRLLLLLALAFFLLSFGYY 192
Score = 29.6 bits (67), Expect = 5.3
Identities = 7/55 (12%), Positives = 13/55 (23%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFV 264
F FF F ++ + + +L F L +
Sbjct: 172 FLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGIL 226
>gnl|CDD|220689 pfam10318, 7TM_GPCR_Srh, Serpentine type 7TM GPCR chemoreceptor
Srh. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srh is part of the Str
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 302
Score = 32.9 bits (76), Expect = 0.43
Identities = 9/46 (19%), Positives = 11/46 (23%), Gaps = 3/46 (6%)
Query: 210 FFFF---FFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQS 252
F +F FF F Y+L S S
Sbjct: 176 VFVLATDSTYFLISIVILILILIIQILFFVFLTIYYLFKSLKSSLS 221
Score = 28.7 bits (65), Expect = 9.3
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFY 238
LA + +F F+ F ++ F
Sbjct: 179 LATDSTYFLISIVILILILIIQILFFVFLTIYYLFK 214
>gnl|CDD|217381 pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family. This family
includes members from a wide variety of eukaryotes. It
includes the TB2/DP1 (deleted in polyposis) protein,
which in humans is deleted in severe forms of familial
adenomatous polyposis, an autosomal dominant oncological
inherited disease. The family also includes the plant
protein of known similarity to TB2/DP1, the HVA22
abscisic acid-induced protein, which is thought to be a
regulatory protein.
Length = 94
Score = 31.0 bits (71), Expect = 0.44
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFY 241
F F F + FY+ F +
Sbjct: 45 FLTLFESFSDIILSWIPFYYELKLLFLVWLVL 76
>gnl|CDD|234023 TIGR02814, pfaD_fam, PfaD family protein. The protein PfaD is part
of four gene locus, similar to polyketide biosynthesis
systems, responsible for omega-3 polyunsaturated fatty
acid biosynthesis in several high pressure and/or
cold-adapted bacteria. Several other members of the seed
alignment for this model are found in loci presumed to
act in polyketide biosyntheses per se.
Length = 444
Score = 33.1 bits (76), Expect = 0.46
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 128 IQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTI 164
I+VG A G+ G P A A+ LGAD++V ++
Sbjct: 225 IRVGAAGGI------GTPEAAAAAFMLGADFIVTGSV 255
>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family. This
group resembles the zinc-dependent alcohol dehydrogenase
and has the catalytic and structural zinc-binding sites
characteristic of this group. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines. Other MDR members have only a catalytic zinc,
and some contain no coordinated zinc.
Length = 384
Score = 32.9 bits (75), Expect = 0.50
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 124 GLAAIQVGKAYGLT-VFASVGCPVGVAKAYGLGADYVVDHTIRELDRFANQILSYGSELD 182
GLAAI + KA G + V A A +GADYV + T +++
Sbjct: 216 GLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWG 275
Query: 183 AD 184
AD
Sbjct: 276 AD 277
>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family.
This group resembles the zinc-dependent alcohol
dehydrogenases of the medium chain dehydrogenase family.
However, this subgroup does not contain the
characteristic catalytic zinc site. Also, it contains an
atypical structural zinc-binding pattern:
DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the cleft
between the catalytic and coenzyme-binding domains at
the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 325
Score = 32.7 bits (75), Expect = 0.52
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAY--GLGADYVVD 161
+T+ + GA+ G+ A+Q+ K G V A K + GAD VVD
Sbjct: 164 ETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR------KDWLKEFGADEVVD 209
>gnl|CDD|216975 pfam02326, YMF19, Plant ATP synthase F0. This family corresponds
to subunit 8 (YMF19) of the F0 complex of plant and
algae mitochondrial F-ATPases (EC:3.6.1.34).
Length = 84
Score = 30.4 bits (69), Expect = 0.53
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHS 255
F +F FF+ FFF FY F F L L + L+ S S
Sbjct: 5 KFTYFTQFFWLCLFFFTFYIFLLNFILPKISRILKLRKKLLSSLIS 50
Score = 27.7 bits (62), Expect = 5.3
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 209 HFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFF 240
+F FF+ FFF F+ F F
Sbjct: 7 TYFTQFFWLCLFFFTFYIFLLNFILPKISRIL 38
>gnl|CDD|222001 pfam13239, 2TM, 2TM domain. This short region contains two
transmembrane alpha helices that are found associated
with a wide range of other domains. This domain may be
involved in cell lysis or peptidoglycan turnover.
Length = 83
Score = 30.3 bits (69), Expect = 0.54
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 194 RARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
RA+++ F Y H + F +F+F + + + L
Sbjct: 4 RAKKRVKRIKGF-YIHLIVYLIVNLFLIVINLLTGPGYFWFLWPILGWGIGL 54
>gnl|CDD|211387 cd11301, Fut1_Fut2_like, Alpha-1,2-fucosyltransferase.
Alpha-1,2-fucosyltransferases (Fut1, Fut2) catalyze the
transfer of alpha-L-fucose to the terminal
beta-D-galactose residue of glycoconjugates via an
alpha-1,2-linkage, generating carbohydrate structures
that exhibit H-antigenicity for blood-group
carbohydrates. These structures also act as ligands for
morphogenesis, the adhesion of microbes, and
metastasizing cancer cells. Fut1 is responsible for
producing the H antigen on red blood cells. Fut2 is
expressed in epithelia of secretory tissues, and
individuals termed "secretors" have at least one
functional copy of the gene; they secrete H antigen
which is further processed into A and/or B antigens
depending on the ABO genotype. O-fucosyltransferase-like
proteins are GDP-fucose dependent enzymes with
similarities to the family 1 glycosyltransferases (GT1).
They are soluble ER proteins that may be proteolytically
cleaved from a membrane-associated preprotein, and are
involved in the O-fucosylation of protein substrates,
the core fucosylation of growth factor receptors, and
other processes.
Length = 265
Score = 32.4 bits (74), Expect = 0.54
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 205 FNYKHFFFFFFFFFFFFFFF---FFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSC 256
NY+H+ ++ F+ +F+ F FF L + +++ +S
Sbjct: 85 ENYRHYLGRYYQFWKYFYSIKGEIRQEFKFFEDLEEENNKILKKLKEELKNTNSV 139
Score = 29.7 bits (67), Expect = 4.5
Identities = 16/130 (12%), Positives = 30/130 (23%), Gaps = 20/130 (15%)
Query: 169 RFANQILSYGSELDADHPGFTDPVYR--ARRKYFADLAFNYKHFFFFFFFFFFFFFFFFF 226
NQ+ Y R A++ L + +F FF
Sbjct: 10 GLGNQLFQYAF-------------LRALAKKLGRRKLFLDTSGYFERNLLKLLEFFNISL 56
Query: 227 FYF-----FFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFVIFSNHQDEVGALAKTLK 281
+L H + F + + E+ K +
Sbjct: 57 PILSRKEILLLKNLRLLNEDPVLKKLLRENYRHYLGRYYQFWKYFYSIKGEIRQEFKFFE 116
Query: 282 LFKKHNVNLL 291
++ N +L
Sbjct: 117 DLEEENNKIL 126
>gnl|CDD|222537 pfam14093, DUF4271, Domain of unknown function (DUF4271). This
family of integral membrane proteins is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are typically between
221 and 326 amino acids in length.
Length = 207
Score = 32.2 bits (74), Expect = 0.55
Identities = 5/41 (12%), Positives = 12/41 (29%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
+ + +F F +F F+ L++
Sbjct: 121 WLFSKLSLSSYFGLLLFPLVLLLVYFDSLSFYIAVIILLII 161
Score = 29.1 bits (66), Expect = 5.1
Identities = 13/67 (19%), Positives = 18/67 (26%), Gaps = 16/67 (23%)
Query: 194 RARRKYFADL-AFNYKHFFFFFFFFF-----FFFFFFF----------FFYFFFFFFFFF 237
+ R KYF + F F F F + + F F
Sbjct: 34 KFRDKYFIIETGKENRPFQLFLFLQTCLLLSLFIYLYLRDFGLELFFSVQLIVFGLIFGG 93
Query: 238 YFFYFLL 244
F + LL
Sbjct: 94 VFLFILL 100
Score = 29.1 bits (66), Expect = 5.1
Identities = 10/38 (26%), Positives = 12/38 (31%)
Query: 207 YKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
+ F FF F F F F Y Y L+
Sbjct: 71 LRDFGLELFFSVQLIVFGLIFGGVFLFILLKYILYRLI 108
Score = 28.3 bits (64), Expect = 8.9
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
F + + F FF F F F F+LL
Sbjct: 65 LFIYLYLRDFGLELFFSVQLIVFGLIFGGVFLFILL 100
>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 331
Score = 32.6 bits (75), Expect = 0.56
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFA 140
+ I GA+ G G A +++ G V+
Sbjct: 141 QRVLIHGASGGVGQALLELALLAGAEVYG 169
>gnl|CDD|177155 MTH00092, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 111
Score = 31.0 bits (71), Expect = 0.56
Identities = 8/37 (21%), Positives = 9/37 (24%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F F F Y FF F + S
Sbjct: 1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSS 37
Score = 30.2 bits (69), Expect = 1.1
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
F F FF F FF F+ ++Y L+
Sbjct: 73 FLGLLVSDFSSLISFFMLMIFIFFGFYMEWWYGKLI 108
Score = 28.7 bits (65), Expect = 3.6
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFFFYFFYF 242
F F FF F F+ FY
Sbjct: 72 MFLGLLVSDFSSLISFFMLMIFIFFGFYM 100
Score = 28.7 bits (65), Expect = 4.0
Identities = 6/33 (18%), Positives = 8/33 (24%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYF 242
F F F + F+ F F
Sbjct: 6 FVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSF 38
Score = 27.9 bits (63), Expect = 6.9
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFF 232
F L + FF F FF F+ +++
Sbjct: 72 MFLGLLVSDFSSLISFFMLMIFIFFGFYMEWWYG 105
Score = 27.6 bits (62), Expect = 7.5
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 202 DLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFF 240
DL F FF + FF F+ +++
Sbjct: 67 DLEIVMFLGLLVSDFSSLISFFMLMIFIFFGFYMEWWYG 105
>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and
related eicosanoids are metabolized by the oxidation of
the 15(S)-hydroxyl group of the NAD+-dependent (type I
15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH)
followed by reduction by NADPH/NADH-dependent (type II
15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to
15-keto-13,14,-dihydroprostaglandins. 13-PGR is a
bifunctional enzyme, since it also has leukotriene B(4)
12-hydroxydehydrogenase activity. These 15-PGDH and
related enzymes are members of the medium chain
dehydrogenase/reductase family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 329
Score = 32.5 bits (75), Expect = 0.59
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAK-AY---GLGADYVVDH 162
+T+ + A G Q+ K G V G K + LG D +++
Sbjct: 147 ETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSD---EKCRWLVEELGFDAAINY 198
>gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase
sniffer-like, classical (c) SDRs. Sniffer is an
NADPH-dependent carbonyl reductase of the classical SDR
family. Studies in Drosophila melanogaster implicate
Sniffer in the prevention of neurodegeneration due to
aging and oxidative-stress. This subgroup also includes
Rhodococcus sp. AD45 IsoH, which is an NAD-dependent
1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase
involved in isoprene metabolism, Aspergillus nidulans
StcE encoded by a gene which is part of a proposed
sterigmatocystin biosynthesis gene cluster, Bacillus
circulans SANK 72073 BtrF encoded by a gene found in the
butirosin biosynthesis gene cluster, and Aspergillus
parasiticus nor-1 involved in the biosynthesis of
aflatoxins. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 233
Score = 32.3 bits (74), Expect = 0.62
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 115 FIIGANRGNGLA-AIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELD 168
I GA+RG GL Q+ TV A+ P + LGA + H I ELD
Sbjct: 2 LITGASRGIGLELVRQLLARGNNTVIATCRDPSAATELAALGASHSRLH-ILELD 55
>gnl|CDD|177136 MTH00064, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 151
Score = 31.4 bits (72), Expect = 0.64
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFV 264
+Y + FFFFFF F+ + FY S+ + C +F F+
Sbjct: 79 VSYSNLGELGVFFFFFFGLLLCVLVFYSLVNVEFSFYLCTSSEGVFYLFL-CLVLMFGFI 137
Query: 265 IFS 267
+ S
Sbjct: 138 VLS 140
>gnl|CDD|224209 COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy
production and conversion].
Length = 381
Score = 32.3 bits (74), Expect = 0.69
Identities = 10/55 (18%), Positives = 15/55 (27%)
Query: 212 FFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFVIF 266
+F F+ F F L + ++S P VIF
Sbjct: 281 YFLPFYAILRAIPSKLGGVLAMFPILILFLLPFLDRSKVRSPRDRPVFTGIGVIF 335
>gnl|CDD|177132 MTH00060, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 116
Score = 30.6 bits (70), Expect = 0.71
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFF 235
F FF FF F YFF +
Sbjct: 2 LVLLFVFFVFFLLFLVIYFFHSGLW 26
Score = 28.3 bits (64), Expect = 4.4
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 16/60 (26%)
Query: 203 LAFNYKHFFFFFFFFFFFFF----------------FFFFFYFFFFFFFFFYFFYFLLLS 246
L+ N F +FF FF F F+ F+Y++FF F F L S
Sbjct: 50 LSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGLLFYNFWYYYFFLLLLFLGFVVELFS 109
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 32.9 bits (75), Expect = 0.71
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 200 FADLAFNYKHFFFFFFFFFFFFFFFFFFYF 229
+A +AF + FF+F+F FF F +F Y+
Sbjct: 1315 YAMVAFEWTAAKFFWFYFISFFSFLYFTYY 1344
Score = 29.8 bits (67), Expect = 6.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 221 FFFFFFFYFFFFFFFFFY 238
FF+F+F FF F +F +Y
Sbjct: 1327 FFWFYFISFFSFLYFTYY 1344
Score = 29.8 bits (67), Expect = 6.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 225 FFFYFFFFFFFFFYFFYF 242
FF+++F FF F YF Y+
Sbjct: 1327 FFWFYFISFFSFLYFTYY 1344
Score = 29.4 bits (66), Expect = 8.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 215 FFFFFFFFFFFFFYFFFF 232
FF+F+F FF F YF ++
Sbjct: 1327 FFWFYFISFFSFLYFTYY 1344
>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion].
Length = 386
Score = 32.4 bits (74), Expect = 0.74
Identities = 13/71 (18%), Positives = 15/71 (21%), Gaps = 11/71 (15%)
Query: 205 FNYKHFFFFFFFFFFFFFF--------FFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSC 256
F F FF F F F LLL + C
Sbjct: 31 VLGSQAVLLDFLGRPFGFFGLQFWAQEFLLLALLLIGALFGLFLITLLLGRVFC--GWVC 88
Query: 257 PFS-LFDFVIF 266
P L +
Sbjct: 89 PQGVLTELAEG 99
>gnl|CDD|240093 cd04742, NPD_FabD, 2-Nitropropane dioxygenase (NPD)-like domain,
associated with the (acyl-carrier-protein)
S-malonyltransferase FabD. NPD is part of the
nitroalkaneoxidizing enzyme family, that catalyzes
oxidative denitrification of nitroalkanes to their
corresponding carbonyl compounds and nitrites. NDPs are
members of the NAD(P)H-dependent flavin oxidoreductase
family that reduce a range of alternative electron
acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as
electron donor. Some contain 4Fe-4S cluster to transfer
electron from FAD to FMN.
Length = 418
Score = 32.2 bits (74), Expect = 0.78
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 128 IQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTI 164
I+VG A G+ G P A A+ LGAD++V +I
Sbjct: 220 IRVGAAGGI------GTPEAAAAAFALGADFIVTGSI 250
>gnl|CDD|214338 CHL00025, ndhF, NADH dehydrogenase subunit 5.
Length = 741
Score = 32.6 bits (75), Expect = 0.81
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFF 234
+ F + F+ F YFFF F
Sbjct: 718 SYLFLYLFYVSIFLLILYFFFSFI 741
Score = 31.8 bits (73), Expect = 1.3
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 212 FFFFFFFFFFFFFFFFYFFFFFFF 235
+ F + F+ F +FFF F
Sbjct: 718 SYLFLYLFYVSIFLLILYFFFSFI 741
Score = 31.8 bits (73), Expect = 1.5
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 209 HFFFFFFFFFFFFFFFFFFYFFF 231
+ F + F+ F +FF+ F
Sbjct: 719 YLFLYLFYVSIFLLILYFFFSFI 741
Score = 31.0 bits (71), Expect = 2.2
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 213 FFFFFFFFFFFFFFFYFFFFFFFF 236
+ F + F+ F +FFF F
Sbjct: 718 SYLFLYLFYVSIFLLILYFFFSFI 741
Score = 31.0 bits (71), Expect = 2.3
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 209 HFFFFFFFFFFFFFFFFFFYFFFF 232
+ F + F+ F +F+F F
Sbjct: 718 SYLFLYLFYVSIFLLILYFFFSFI 741
Score = 30.6 bits (70), Expect = 3.2
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFFF 237
+ F + F+ F +FFF F
Sbjct: 718 SYLFLYLFYVSIFLLILYFFFSFI 741
Score = 29.9 bits (68), Expect = 4.7
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFF 233
+ F + F+ F ++FF F
Sbjct: 718 SYLFLYLFYVSIFLLILYFFFSFI 741
Score = 29.9 bits (68), Expect = 5.4
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 215 FFFFFFFFFFFFFYFFFFFFFFFY 238
+ F + F+ F +FFF F
Sbjct: 718 SYLFLYLFYVSIFLLILYFFFSFI 741
Score = 29.9 bits (68), Expect = 5.7
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 218 FFFFFFFFFFYFFFFFFFFFYFFY 241
+ F + F+ F +FF+ F
Sbjct: 718 SYLFLYLFYVSIFLLILYFFFSFI 741
Score = 29.5 bits (67), Expect = 7.5
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 220 FFFFFFFFYFFFFFFFFFYFFYFL 243
+ F + FY F ++FF F+
Sbjct: 718 SYLFLYLFYVSIFLLILYFFFSFI 741
>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 365
Score = 32.1 bits (73), Expect = 0.85
Identities = 5/63 (7%), Positives = 7/63 (11%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPF 258
+ F F F + L I
Sbjct: 35 SGLLILFLALVIALFDLRLQVLGFLLLILILVLLLLILAWLGLPGLSLGFFILIFLLIYL 94
Query: 259 SLF 261
Sbjct: 95 LGV 97
Score = 32.1 bits (73), Expect = 0.94
Identities = 7/63 (11%), Positives = 12/63 (19%), Gaps = 1/63 (1%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI-QSCHSCPFSLFDF 263
F + FF + L+ + + F L
Sbjct: 53 LQVLGFLLLILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLLLL 112
Query: 264 VIF 266
I
Sbjct: 113 AIA 115
Score = 31.7 bits (72), Expect = 1.2
Identities = 5/46 (10%), Positives = 6/46 (13%)
Query: 197 RKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYF 242
R + FF F Y
Sbjct: 52 RLQVLGFLLLILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGV 97
Score = 31.3 bits (71), Expect = 1.6
Identities = 9/88 (10%), Positives = 16/88 (18%), Gaps = 5/88 (5%)
Query: 196 RRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFF-----FFFFFFFYFFYFLLLSQPLI 250
+F L + F F L+L L+
Sbjct: 9 FLLWFLILLLLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVLL 68
Query: 251 QSCHSCPFSLFDFVIFSNHQDEVGALAK 278
+ + F + L
Sbjct: 69 LLILAWLGLPGLSLGFFILIFLLIYLLG 96
Score = 30.1 bits (68), Expect = 4.0
Identities = 6/56 (10%), Positives = 9/56 (16%)
Query: 196 RRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQ 251
L F + FF F + + L
Sbjct: 49 FDLRLQVLGFLLLILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALAL 104
Score = 30.1 bits (68), Expect = 4.2
Identities = 9/73 (12%), Positives = 13/73 (17%)
Query: 174 ILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFF 233
I A D + L + FF F +
Sbjct: 34 ISGLLILFLALVIALFDLRLQVLGFLLLILILVLLLLILAWLGLPGLSLGFFILIFLLIY 93
Query: 234 FFFFYFFYFLLLS 246
F L+
Sbjct: 94 LLGVRGFALALIL 106
>gnl|CDD|177151 MTH00086, CYTB, cytochrome b; Provisional.
Length = 355
Score = 32.2 bits (74), Expect = 0.91
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 217 FFFFFFFFFFFYFFFFFFFFFYFF 240
F F F F YFF F F+
Sbjct: 332 FLFLSQIFSFIYFFLILLMLFLFY 355
Score = 31.1 bits (71), Expect = 1.7
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFY 228
F + F F +FF F FY
Sbjct: 332 FLFLSQIFSFIYFFLILLMLFLFY 355
Score = 31.1 bits (71), Expect = 1.8
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFFF 237
F F F F +FF F F+
Sbjct: 332 FLFLSQIFSFIYFFLILLMLFLFY 355
Score = 30.3 bits (69), Expect = 3.6
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFF 233
F F F F +FF F F+
Sbjct: 332 FLFLSQIFSFIYFFLILLMLFLFY 355
Score = 29.9 bits (68), Expect = 4.2
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 215 FFFFFFFFFFFFFYFFFFFFFFFY 238
F F F F +F+ F FY
Sbjct: 332 FLFLSQIFSFIYFFLILLMLFLFY 355
Score = 29.9 bits (68), Expect = 4.8
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 212 FFFFFFFFFFFFFFFFYFFFFFFF 235
F F F F +FF F F+
Sbjct: 332 FLFLSQIFSFIYFFLILLMLFLFY 355
Score = 29.5 bits (67), Expect = 6.3
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFF 234
F F F F +FF F F+
Sbjct: 332 FLFLSQIFSFIYFFLILLMLFLFY 355
Score = 29.5 bits (67), Expect = 6.4
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 213 FFFFFFFFFFFFFFFYFFFFFFFF 236
F F F F +FF F F+
Sbjct: 332 FLFLSQIFSFIYFFLILLMLFLFY 355
>gnl|CDD|215958 pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone
oxidoreductase, chain 3.
Length = 102
Score = 30.2 bits (69), Expect = 0.92
Identities = 5/33 (15%), Positives = 7/33 (21%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYF 242
+ F F F F F +
Sbjct: 61 LLLPWAVVFNGLGFLSFVEMFLFLLILLLGLLY 93
Score = 29.4 bits (67), Expect = 1.6
Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 187 GFTDPVYRARRKYFADLAFNYKHFFFFFFF--------FFFFFFFFFFFYFFFFFFFFFY 238
GF DP+ +AR L F+ + F F + F F F F
Sbjct: 30 GF-DPLGKAR------LPFSLRFFLIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFL 82
Query: 239 FFYFLLLS 246
F LLL
Sbjct: 83 FLLILLLG 90
>gnl|CDD|215360 PLN02672, PLN02672, methionine S-methyltransferase.
Length = 1082
Score = 32.4 bits (74), Expect = 0.97
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 50 AEDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFH 94
A++ IP L ++ LK + F P AG R+ +AG R++H
Sbjct: 400 ADEKIPFLAYLASALKGLSYFPCEPPAGSKRFRNLIAGF-MRIYH 443
Score = 32.4 bits (74), Expect = 0.97
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 418 AEDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFH 462
A++ IP L ++ LK + F P AG R+ +AG R++H
Sbjct: 400 ADEKIPFLAYLASALKGLSYFPCEPPAGSKRFRNLIAGF-MRIYH 443
>gnl|CDD|180774 PRK06953, PRK06953, short chain dehydrogenase; Provisional.
Length = 222
Score = 31.2 bits (71), Expect = 1.1
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 113 TLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGAD-YVVDHT 163
T+ I+GA+RG G ++ +A G V A+ +A LGA+ +D
Sbjct: 3 TVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQALGAEALALDVA 54
>gnl|CDD|224610 COG1696, DltB, Predicted membrane protein involved in D-alanine
export [Cell envelope biogenesis, outer membrane].
Length = 425
Score = 31.9 bits (73), Expect = 1.1
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 8/82 (9%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFF--------FFFFFFYFFYFLLLSQPLIQSCHSCPFSLF 261
F F FF+ F F ++ F F+ L ++ + +
Sbjct: 2 FSFLFFYLFLLAFLPIYWLGLFGKRLQNYLLLVSNFFLLAIFSLVFLILVALYIYFNYQL 61
Query: 262 DFVIFSNHQDEVGALAKTLKLF 283
++F + + LA +
Sbjct: 62 ALLLFYDRYRKRRILAGCGVFY 83
>gnl|CDD|220694 pfam10326, 7TM_GPCR_Str, Serpentine type 7TM GPCR chemoreceptor
Str. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Str is a member of the
Str superfamily of chemoreceptors. Almost a quarter
(22.5%) of str and srj family genes and pseudogenes in
C. elegans appear to have been newly formed by gene
duplications since the species split. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 307
Score = 31.3 bits (72), Expect = 1.4
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFF 232
F+ K +F + F + +FFF
Sbjct: 120 FSGKKLILWFLYPLIFGIIWGLLVYFFF 147
Score = 30.9 bits (71), Expect = 2.2
Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 9/45 (20%)
Query: 209 HFFFFFF---------FFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
F + + +F +F Y F + YF
Sbjct: 103 QFIYRYLAVCRPGKLKYFSGKKLILWFLYPLIFGIIWGLLVYFFF 147
>gnl|CDD|211613 TIGR00882, 2A0105, oligosaccharide:H+ symporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 396
Score = 31.6 bits (72), Expect = 1.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 209 HFFFFFFFFFFFFFFFFFFYFFFF 232
F+ F FFF +FF YF FF
Sbjct: 2 TNFWMFGLFFFLYFFIMSAYFPFF 25
Score = 28.9 bits (65), Expect = 9.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 213 FFFFFFFFFFFFFFFYFFFFFF 234
F+ F FFF +FF +F FF
Sbjct: 4 FWMFGLFFFLYFFIMSAYFPFF 25
>gnl|CDD|237227 PRK12846, PRK12846, peptide deformylase; Reviewed.
Length = 165
Score = 30.5 bits (70), Expect = 1.5
Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 29/93 (31%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELDRFA 171
+T+ A G GLAA Q+G + + V D V T+
Sbjct: 38 ETM---RAADGVGLAAPQIGVSLRVVVI---DLG-----------DDRVPPTV-----LI 75
Query: 172 NQILSYGSELDADH-------PGFTDPVYRARR 197
N ++ S + PG V R R
Sbjct: 76 NPEITELSPEEEVGWEGCLSVPGLRGEVERPAR 108
>gnl|CDD|216329 pfam01148, CTP_transf_1, Cytidylyltransferase family. The members
of this family are integral membrane protein
cytidylyltransferases. The family includes phosphatidate
cytidylyltransferase EC:2.7.7.41 as well as Sec59 from
yeast. Sec59 is a dolichol kinase EC:2.7.1.108.
Length = 259
Score = 31.2 bits (71), Expect = 1.5
Identities = 6/39 (15%), Positives = 10/39 (25%)
Query: 207 YKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
Y F+ F FF + +L+
Sbjct: 100 YHRVSSTLLPLFYVGLFLSLLLITNPFFGLLWALLLILV 138
>gnl|CDD|153158 cd04886, ACT_ThrD-II-like, C-terminal ACT domain of biodegradative
(catabolic) threonine dehydratase II (ThrD-II) and other
related ACT domains. This CD includes the C-terminal
ACT domain of biodegradative (catabolic) threonine
dehydratase II (ThrD-II) and other related ACT domains.
The Escherichia coli tdcB gene product, ThrD-II,
anaerobically catalyzes the pyridoxal
phosphate-dependent dehydration of L-threonine and
L-serine to ammonia and to alpha-ketobutyrate and
pyruvate, respectively. Tetrameric ThrD-II is subject to
allosteric activation by AMP, inhibition by alpha-keto
acids, and catabolite inactivation by several
metabolites of glycolysis and the citric acid cycle.
Also included in this CD are N-terminal ACT domains
present in smaller (~170 a.a.) archaeal proteins of
unknown function. Members of this CD belong to the
superfamily of ACT regulatory domains.
Length = 73
Score = 28.7 bits (65), Expect = 1.5
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 270 QDEVGALAKTLKLFKKHNVNLLHIE-SRSSTRIENNY---EFMVECAPGGDLSSVIESLR 325
D G LAK L + + N++ + R+ + E +E + +I +LR
Sbjct: 6 PDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALR 65
>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn
finger [General function prediction only].
Length = 309
Score = 31.3 bits (71), Expect = 1.6
Identities = 19/110 (17%), Positives = 28/110 (25%), Gaps = 19/110 (17%)
Query: 206 NYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFVI 265
NY+ F+ F + Y+ + + F+I
Sbjct: 151 NYRFFY--------QFLLYTILVALVVLLSTAYYIAGIFSIRHD-------TSLAICFLI 195
Query: 266 FSNHQDEVGALAKTLKLFKKHN----VNLLHIESRSSTRIENNYEFMVEC 311
F V T L NL IE +R + EF C
Sbjct: 196 FGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLC 245
>gnl|CDD|215206 PLN02362, PLN02362, hexokinase.
Length = 509
Score = 31.4 bits (71), Expect = 1.6
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 363 SYGSELDADHPGFTDPVYRA--RRKYFADLAFNYKHSILLMPEHNHVF---------PLL 411
SY +LDA+ P D + Y D+ + IL M + + +F P +
Sbjct: 297 SYDIDLDAESPNPNDQGFEKMISGMYLGDIV---RRVILRMSQESDIFGPVSSRLSTPFV 353
Query: 412 IQNCGYA---EDNIPQLEDISKFLKDSTGFSLRPV 443
++ A ED+ P+L+++++ LK++ G S P+
Sbjct: 354 LRTPSVAAMHEDDSPELQEVARILKETLGISEVPL 388
>gnl|CDD|218768 pfam05832, DUF846, Eukaryotic protein of unknown function (DUF846).
This family consists of several of unknown function
from a variety of eukaryotic organisms.
Length = 141
Score = 29.9 bits (68), Expect = 1.7
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
F+ + F+ F F + LL+ L
Sbjct: 93 LFWLALYVSPLFWVVLAIINLISFKFKWLLLVFIALF 129
Score = 29.5 bits (67), Expect = 2.3
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
FF F + F F + LLLS
Sbjct: 9 FFHLLFKLLAILLYLLGGLFSDNFILQFIIIILLLS 44
Score = 28.0 bits (63), Expect = 9.2
Identities = 4/30 (13%), Positives = 8/30 (26%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFF 240
F+ + F+ F F +
Sbjct: 93 LFWLALYVSPLFWVVLAIINLISFKFKWLL 122
Score = 28.0 bits (63), Expect = 9.7
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 192 VYRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFF 237
V+ +R F A + F+ + F+ F F +
Sbjct: 76 VFESRPPPFVPNAIDSNLFWLALYVSPLFWVVLAIINLISFKFKWL 121
>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This
group contains members identified as related to
zinc-dependent alcohol dehydrogenase and other members
of the MDR family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group includes
various activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
ADH-like proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and generally have 2 tightly bound zinc atoms per
subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 337
Score = 31.0 bits (71), Expect = 1.8
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 112 DTLFIIGANRGN-GLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVD 161
DT+ ++GA G GL IQV KA G V + A LGAD ++
Sbjct: 161 DTVLVVGA--GPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTIN 209
>gnl|CDD|236173 PRK08177, PRK08177, short chain dehydrogenase; Provisional.
Length = 225
Score = 30.8 bits (70), Expect = 1.9
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 111 PDTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGA 156
T IIGA+RG GL + G V A+V P + L A
Sbjct: 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGP---QQDTALQA 43
>gnl|CDD|223866 COG0795, COG0795, Predicted permeases [General function prediction
only].
Length = 364
Score = 31.2 bits (71), Expect = 2.0
Identities = 10/70 (14%), Positives = 13/70 (18%), Gaps = 8/70 (11%)
Query: 197 RKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFF-----FFFYFFYFLLLSQPLIQ 251
+Y K F LLLS P +
Sbjct: 5 DRYLLREYL--KTFLAILLVLLAILLIIDLLELLNGKAVDGRYPALDVLLLLLLSLPTLL 62
Query: 252 SCHSCPFSLF 261
P +L
Sbjct: 63 P-LVLPLALL 71
>gnl|CDD|224376 COG1459, PulF, Type II secretory pathway, component PulF [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 397
Score = 31.0 bits (71), Expect = 2.0
Identities = 7/37 (18%), Positives = 11/37 (29%)
Query: 215 FFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQ 251
F F + + Y LLL +P +
Sbjct: 205 FLLALSDFLREWGWLLLLIIIIIAIGYLLLLRKPAGR 241
Score = 29.9 bits (68), Expect = 5.1
Identities = 7/50 (14%), Positives = 10/50 (20%), Gaps = 9/50 (18%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFY---------FLLLSQPLI 250
F F + + + LLL PL
Sbjct: 205 FLLALSDFLREWGWLLLLIIIIIAIGYLLLLRKPAGRRRLDRLLLRLPLF 254
>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1066
Score = 31.2 bits (72), Expect = 2.0
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 18/60 (30%)
Query: 345 PWFPRRIRELDRFANQILSYGSELDAD------HPGFTDP------------VYRARRKY 386
PWF +I E+ ++ G LDA+ GF+D V + R+
Sbjct: 457 PWFLEQIEEIVELEEELKENGLPLDAELLREAKRLGFSDARIAKLLGVTEDEVRKLRKAL 516
>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and
metabolism].
Length = 447
Score = 31.1 bits (71), Expect = 2.0
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 263 FVIFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAPGGDLSSVIE 322
V VG A+ + + +N+ I S E + F V P D +
Sbjct: 311 TVSGPGMNGMVGFAARVFGILAEAGINVDLITQSIS---EVSISFTV---PESDAPRALR 364
Query: 323 SLRS 326
+L
Sbjct: 365 ALLE 368
>gnl|CDD|198110 smart01042, Brr6_like_C_C, Di-sulfide bridge nucleocytoplasmic
transport domain. Brr6_like_C_C is the highly conserved
C-terminal region of a group of proteins found in fungi.
It carries four highly conserved cysteine residues. It
is suggested that members of the family interact with
each other via di-sulfide bridges to form a complex
which is involved in nucleocytoplasmic transport.
Length = 134
Score = 29.9 bits (68), Expect = 2.0
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 3/28 (10%)
Query: 204 AFNYKHFFFFFFFFFFFFF---FFFFFY 228
++K F F F F FY
Sbjct: 106 PLSWKTLLFILILILLSIFASNFAFGFY 133
>gnl|CDD|216682 pfam01757, Acyl_transf_3, Acyltransferase family. This family
includes a range of acyltransferase enzymes. This domain
is found in many as yet uncharacterized C. elegans
proteins and it is approximately 300 amino acids long.
Length = 326
Score = 31.0 bits (70), Expect = 2.1
Identities = 3/35 (8%), Positives = 5/35 (14%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
+ +FLL
Sbjct: 158 ALLLLLSLLYILILLVGLPPTVLNLLIGLLPFFLL 192
>gnl|CDD|223839 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 31.2 bits (71), Expect = 2.2
Identities = 5/28 (17%), Positives = 6/28 (21%)
Query: 208 KHFFFFFFFFFFFFFFFFFFYFFFFFFF 235
F F F F F+
Sbjct: 10 GRLFRRRLNLLFLIIFLLFALLILRLFY 37
Score = 30.8 bits (70), Expect = 2.4
Identities = 5/29 (17%), Positives = 7/29 (24%)
Query: 206 NYKHFFFFFFFFFFFFFFFFFFYFFFFFF 234
+ F F F F F+
Sbjct: 9 KGRLFRRRLNLLFLIIFLLFALLILRLFY 37
Score = 29.7 bits (67), Expect = 6.0
Identities = 6/26 (23%), Positives = 6/26 (23%)
Query: 216 FFFFFFFFFFFFYFFFFFFFFFYFFY 241
F F F F FY
Sbjct: 12 LFRRRLNLLFLIIFLLFALLILRLFY 37
Score = 28.9 bits (65), Expect = 9.1
Identities = 4/26 (15%), Positives = 6/26 (23%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFFFYF 239
F F F F ++
Sbjct: 12 LFRRRLNLLFLIIFLLFALLILRLFY 37
Score = 28.9 bits (65), Expect = 9.5
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYF 229
F + F F F ++
Sbjct: 13 FRRRLNLLFLIIFLLFALLILRLFY 37
>gnl|CDD|239584 cd03507, Delta12-FADS-like, The Delta12 Fatty Acid Desaturase
(Delta12-FADS)-like CD includes the integral-membrane
enzymes, delta-12 acyl-lipid desaturases, oleate
12-hydroxylases, omega3 and omega6 fatty acid
desaturases, and other related proteins, found in a wide
range of organisms including higher plants, green algae,
diatoms, nematodes, fungi, and bacteria. The expression
of these proteins appears to be temperature dependent:
decreases in temperature result in increased levels of
fatty acid desaturation within membrane lipids
subsequently altering cell membrane fluidity. An
important enzyme for the production of polyunsaturates
in plants is the oleate delta-12 desaturase (Arabidopsis
FAD2) of the endoplasmic reticulum. This enzyme accepts
l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate
and requires NADH:cytochrome b oxidoreductase,
cytochrome b, and oxygen for activity. FAD2 converts
oleate(18:1) to linoleate (18:2) and is closely related
to oleate 12-hydroxylase which catalyzes the
hydroxylation of oleate to ricinoleate. Plastid-bound
desaturases (Arabidopsis delta-12 desaturase (FAD6),
omega-3 desaturase (FAD8), omega-6 desaturase (FAD6)),
as well as, the cyanobacterial thylakoid-bound FADSs
require oxygen, ferredoxin, and ferredoxin
oxidoreductase for activity. As in higher plants, the
cyanobacteria delta-12 (DesA) and omega-3 (DesB) FADSs
desaturate oleate (18:1) to linoleate (18:2) and
linoleate (18:2) to linolenate (18:3), respectively.
Omega-3 (DesB/FAD8) and omega-6 (DesD/FAD6) desaturases
catalyze reactions that introduce a double bond between
carbons three and four, and carbons six and seven,
respectively, from the methyl end of fatty acids. As
with other members of this superfamily, this domain
family has extensive hydrophobic regions that would be
capable of spanning the membrane bilayer at least twice.
Comparison of sequences also reveals the existence of
three regions of conserved histidine cluster motifs that
contain eight histidine residues: HXXXH, HXX(X)HH, and
HXXHH. These histidine residues are reported to be
catalytically essential and proposed to be the ligands
for the iron atoms contained within the homologue,
stearoyl CoA desaturase. Mutation of any one of four of
these histidines in the Synechocystis delta-12
acyl-lipid desaturase resulted in complete inactivity.
Length = 222
Score = 30.3 bits (69), Expect = 2.2
Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 2/65 (3%)
Query: 180 ELDADHPGFTDPVYRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYF 239
E D T+ Y K Y++ F + ++ ++ +
Sbjct: 99 EGDEVWVPVTEEEYAELPKRL--PYRLYRNPFLMLSLGWPYYLLLNVLLYYLIPYLVVNA 156
Query: 240 FYFLL 244
+ L+
Sbjct: 157 WLVLI 161
>gnl|CDD|215952 pfam00499, Oxidored_q3, NADH-ubiquinone/plastoquinone
oxidoreductase chain 6.
Length = 140
Score = 29.9 bits (68), Expect = 2.2
Identities = 13/62 (20%), Positives = 18/62 (29%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFV 264
F K F F FF F F + L+ S +S F L +
Sbjct: 69 FKKKSKFLLLLLLLLFILLLFFLLFSNLSFSLNSISSSNVNLLSLLYSSNSLIFILLSLL 128
Query: 265 IF 266
+
Sbjct: 129 LL 130
Score = 28.7 bits (65), Expect = 4.6
Identities = 12/52 (23%), Positives = 15/52 (28%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
Y L+ N K F F F FF F F +S +
Sbjct: 57 YVVSLSPNEKFKFKKKSKFLLLLLLLLFILLLFFLLFSNLSFSLNSISSSNV 108
>gnl|CDD|226888 COG4485, COG4485, Predicted membrane protein [Function unknown].
Length = 858
Score = 31.3 bits (71), Expect = 2.3
Identities = 11/51 (21%), Positives = 12/51 (23%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPL 249
F + Y F F F F FF SQ L
Sbjct: 287 KFNAIPMIYVGIFPLALIVLLFTLKSIRFRVKRLFAGLTAFFIISFYSQYL 337
Score = 30.9 bits (70), Expect = 2.3
Identities = 10/37 (27%), Positives = 10/37 (27%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQ 247
F F F FF FY Y L Q
Sbjct: 306 LLFTLKSIRFRVKRLFAGLTAFFIISFYSQYLDLFWQ 342
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 30.7 bits (70), Expect = 2.3
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 212 FFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
+ F + +F F F+ L +P +
Sbjct: 22 LLLIWIANFVYALKKLKKRSLYFLFLITFFVFLFGRPFL 60
Score = 30.3 bits (69), Expect = 3.7
Identities = 12/60 (20%), Positives = 15/60 (25%), Gaps = 7/60 (11%)
Query: 192 VYRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFF-------FFFFFFFYFFYFLL 244
+ + Y A +F FF F Y F Y Y LL
Sbjct: 149 LIVSSGGYLAYYQSFLSSLPYFIILIGSFFPIAFCLYLATKPSKKKILFILIIYLLYLLL 208
>gnl|CDD|220690 pfam10321, 7TM_GPCR_Srt, Serpentine type 7TM GPCR chemoreceptor
Srt. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srt is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 313
Score = 30.6 bits (70), Expect = 2.4
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 228 YFFFFFFFFFYFFYFLLLSQPLI-QSCHSCPFSLFDFVIFSNHQD 271
+ Y YFL ++P+I S + F FD +IF +
Sbjct: 150 TYIVLILPIIYGIYFLFFTKPVIFNSKYMSWF--FDPLIFGKDPE 192
>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 278
Score = 30.8 bits (70), Expect = 2.4
Identities = 7/55 (12%), Positives = 11/55 (20%), Gaps = 7/55 (12%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFF-------FFYFFYFLLLS 246
L + + F + + F LLLS
Sbjct: 161 LLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVISILILLLS 215
Score = 28.8 bits (65), Expect = 7.3
Identities = 4/43 (9%), Positives = 7/43 (16%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQS 252
F F F + + L +
Sbjct: 163 FGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAIL 205
>gnl|CDD|152707 pfam12272, DUF3610, Protein of unknown function (DUF3610). This
domain family is found in eukaryotes, and is typically
between 146 and 160 amino acids in length. There are two
conserved sequence motifs: FNN and IDS.
Length = 157
Score = 29.7 bits (67), Expect = 2.4
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 14 TKTWGEVFR-NLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDSTGFSL 72
+ W NL L P A K N V+ L+ C ++ P++ D+++F D+
Sbjct: 55 SGDWTICASFNLESLEP--AIKAFNKVYKSLVDICDKYKNLCPEILDLTEF-ADTILRD- 110
Query: 73 RPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKP 105
GL+ + D L R+ S + +P +
Sbjct: 111 ----GLIDTLDTLDFKVKRLSLSEDDVSNPYQN 139
>gnl|CDD|227865 COG5578, COG5578, Predicted integral membrane protein [Function
unknown].
Length = 208
Score = 30.3 bits (69), Expect = 2.6
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 200 FADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYF 242
+ +L + F F F F F Y F + F +F
Sbjct: 93 YVNLYLLVQLPGLLLFILTFVFVFALFLYVIAFLYVFPVLVHF 135
>gnl|CDD|153161 cd04889, ACT_PDH-BS-like, C-terminal ACT domain of the
monofunctional, NAD dependent, prephenate dehydrogenase
(PDH) enzyme that catalyzes the formation of
4-hydroxyphenylpyruvate from prephenate. Included in
this CD is the C-terminal ACT domain of the
monofunctional, NAD dependent, prephenate dehydrogenase
(PDH) enzyme that catalyzes the formation of
4-hydroxyphenylpyruvate from prephenate, found in
Bacillus subtilis (BS) and other Firmicutes, Deinococci,
and Bacteroidetes. PDH is the first enzyme in the
aromatic amino acid pathway specific for the
biosynthesis of tyrosine. This enzyme is feedback
inhibited by tyrosine in B. subtilis and other
microorganisms. Both phenylalanine and tryptophan have
been shown to be inhibitors of this activity in B.
subtilis. Bifunctional chorismate mutase-PDH (TyrA)
enzymes such as those seen in Escherichia coli do not
contain an ACT domain. Also included in this CD is the
N-terminal ACT domain of a novel protein composed almost
entirely of two tandem ACT domains as seen in the
uncharacterized structure (pdb 2F06) of the Bt0572
protein from Bacteroides thetaiotaomicron and related
ACT domains. Members of this CD belong to the
superfamily of ACT regulatory domains.
Length = 56
Score = 27.9 bits (63), Expect = 2.6
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 271 DEVGALAKTLKLFKKHNVNLLHIE 294
++ G LA+ ++ + +N+ I
Sbjct: 7 NKPGRLAEVTEILAEAGINIKAIS 30
>gnl|CDD|153154 cd04882, ACT_Bt0572_2, C-terminal ACT domain of a novel protein
composed of just two ACT domains. Included in this CD
is the C-terminal ACT domain of a novel protein composed
of just two ACT domains, as seen in the yet
uncharacterized structure (pdb 2F06) of the Bt0572
protein from Bacteroides thetaiotaomicron and related
proteins. Members of this CD belong to the superfamily
of ACT regulatory domains.
Length = 65
Score = 28.0 bits (63), Expect = 2.6
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 270 QDEVGALAKTLKLFKKHNVNL 290
D+ G L + L++ + +N+
Sbjct: 7 PDKPGGLHEILQILSEEGINI 27
>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These
alcohol dehydrogenases are related to the cinnamyl
alcohol dehydrogenases (CAD), members of the medium
chain dehydrogenase/reductase family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Cinnamyl alcohol dehydrogenases
(CAD) reduce cinnamaldehydes to cinnamyl alcohols in the
last step of monolignal metabolism in plant cells walls.
CAD binds 2 zinc ions and is NADPH- dependent. CAD
family members are also found in non-plant species, e.g.
in yeast where they have an aldehyde reductase activity.
The medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 341
Score = 30.6 bits (70), Expect = 2.7
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 116 IIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAK---AYGLGADYVVD 161
I GA G G +Q KA GL V + VG K A LGAD VD
Sbjct: 171 ISGAGGGLGHLGVQYAKAMGLRV---IAIDVGDEKLELAKELGADAFVD 216
>gnl|CDD|215632 PLN03207, PLN03207, stomagen; Provisional.
Length = 113
Score = 29.1 bits (65), Expect = 2.7
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 235 FFFYFFYFLLLSQPLIQSCHSCPFSLFDFVIFSNHQDEVGALAK 278
F+ +FLLL +IQ + +D I HQ+ V L
Sbjct: 14 TLFFLLFFLLLGAYVIQGSRNQSILPYDQSISYPHQETVKLLNG 57
>gnl|CDD|240604 cd12921, VKOR_4, Vitamin K epoxide reductase (VKOR) family in
bacteria. This family includes vitamin K epoxide
reductase (VKOR) present only in bacteria. VKOR (also
named VKORC1) is an integral membrane protein that
catalyzes the reduction of vitamin K 2,3-epoxide and
vitamin K to vitamin K hydroquinone, an essential
co-factor subsequently used in the gamma-carboxylation
of glutamic acid residues in blood coagulation enzymes.
All homologs of VKOR contain an active site CXXC motif,
which is switched between reduced and disulfide-bonded
states during the reaction cycle. In some bacterial
homologs, the VKOR domain is fused with domains of the
thioredoxin family of oxidoreductases which may function
as redox partners in initiating the reduction cascade.
This family also has a cysteine peptidase domain present
at the N-terminus of the VKOR domain.
Length = 128
Score = 29.2 bits (66), Expect = 2.7
Identities = 7/35 (20%), Positives = 9/35 (25%)
Query: 216 FFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
+FF F LLL+ P
Sbjct: 62 LLYFFGLLLLLLLSPLNSSLLFLLSLLLLLALPAE 96
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 518
Score = 30.8 bits (70), Expect = 2.8
Identities = 11/87 (12%), Positives = 22/87 (25%), Gaps = 10/87 (11%)
Query: 191 PVYRARRKYFADLAFNYKHFFFFFFFFFFF----------FFFFFFFYFFFFFFFFFYFF 240
+ R + LA + F F FF F+ +
Sbjct: 50 WLVRGAPTSWEGLAKSGFLFGFGFFLAGFYWLGTSLGVGLGLLAVALPLLVLLLAAWLAL 109
Query: 241 YFLLLSQPLIQSCHSCPFSLFDFVIFS 267
+ LL++ + + +V
Sbjct: 110 FLLLVAVLTCRLWFALLVVPSAWVAAE 136
>gnl|CDD|217907 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily.
This superfamily includes fatty acid and carotene
hydroxylases and sterol desaturases. Beta-carotene
hydroxylase is involved in zeaxanthin synthesis by
hydroxylating beta-carotene, but the enzyme may be
involved in other pathways. This family includes C-5
sterol desaturase and C-4 sterol methyl oxidase. Members
of this family are involved in cholesterol biosynthesis
and biosynthesis a plant cuticular wax. These enzymes
contain two copies of a HXHH motif. Members of this
family are integral membrane proteins.
Length = 114
Score = 29.0 bits (65), Expect = 2.9
Identities = 2/34 (5%), Positives = 2/34 (5%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
F Y
Sbjct: 53 LLALIPLLLLLLLFGLHLLVILLGLLLGTLLYLF 86
>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl
glycosylphosphotransferase. Members of this family are
generally found near other genes involved in the
biosynthesis of a variety of exopolysaccharides. These
proteins consist of two fused domains, an N-terminal
hydrophobic domain of generally low conservation and a
highly conserved C-terminal sugar transferase domain
(pfam02397). Characterized and partially characterized
members of this subfamily include Salmonella WbaP
(originally RfbP) , E. coli WcaJ , Methylobacillus EpsB,
Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B
Streptococcus CpsE (originally CpsD), and Streptococcus
suis Cps2E. Each of these is believed to act in
transferring the sugar from, for instance, UDP-glucose
or UDP-galactose, to a lipid carrier such as
undecaprenyl phosphate as the first (priming) step in
the synthesis of an oligosaccharide "block". This
function is encoded in the C-terminal domain. The
liposaccharide is believed to be subsequently
transferred through a "flippase" function from the
cytoplasmic to the periplasmic face of the inner
membrane by the N-terminal domain. Certain closely
related transferase enzymes such as Sinorhizobium ExoY
and Lactococcus EpsD lack the N-terminal domain and are
not found by this model.
Length = 445
Score = 30.6 bits (70), Expect = 2.9
Identities = 6/36 (16%), Positives = 9/36 (25%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F F F F ++ +LL
Sbjct: 70 LLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLL 105
>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is
a conserved membrane protein. The yfhO gene is
transcribed in Difco sporulation medium and the
transcription is affected by the YvrGHb two-component
system. Some members of this family have been annotated
as glycosyl transferases of the PMT family.
Length = 835
Score = 30.7 bits (70), Expect = 2.9
Identities = 11/78 (14%), Positives = 18/78 (23%), Gaps = 7/78 (8%)
Query: 199 YFADLAFNYKHFFFFFFFFF-------FFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQ 251
L++ F F F F +Y
Sbjct: 64 MLGLLSYYLLSPFNLLVFLFPASQLPDAILLIILLKIGLAGLSFAYYLRKRFKKISKWSA 123
Query: 252 SCHSCPFSLFDFVIFSNH 269
S ++L FVI++
Sbjct: 124 LLFSTAYALSGFVIYNRF 141
Score = 30.7 bits (70), Expect = 3.0
Identities = 6/39 (15%), Positives = 7/39 (17%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPL 249
+FF F F PL
Sbjct: 286 LPLLLLILYFFNKLIKLKEKLLFALLLLFLILSFYLPPL 324
>gnl|CDD|233790 TIGR02227, sigpep_I_bact, signal peptidase I, bacterial type. This
model represents signal peptidase I from most bacteria.
Eukaryotic sequences are likely organellar. Several
bacteria have multiple paralogs, but these represent
isozymes of signal peptidase I. Virtually all known
bacteria may be presumed to A related model finds a
simlar protein in many archaea and a few bacteria, as
well as a microsomal (endoplasmic reticulum) protein in
eukaryotes [Protein fate, Protein and peptide secretion
and trafficking].
Length = 163
Score = 29.5 bits (67), Expect = 3.0
Identities = 3/23 (13%), Positives = 4/23 (17%)
Query: 212 FFFFFFFFFFFFFFFFYFFFFFF 234
F FF +
Sbjct: 1 LILSLLIAILLALLIRTFVFFPY 23
Score = 29.5 bits (67), Expect = 3.6
Identities = 4/23 (17%), Positives = 4/23 (17%)
Query: 216 FFFFFFFFFFFFYFFFFFFFFFY 238
F FF Y
Sbjct: 1 LILSLLIAILLALLIRTFVFFPY 23
Score = 29.1 bits (66), Expect = 4.6
Identities = 3/23 (13%), Positives = 4/23 (17%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFF 236
F FF +
Sbjct: 1 LILSLLIAILLALLIRTFVFFPY 23
>gnl|CDD|235400 PRK05305, PRK05305, phosphatidylserine decarboxylase; Provisional.
Length = 206
Score = 30.1 bits (69), Expect = 3.0
Identities = 4/31 (12%), Positives = 7/31 (22%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFF 240
++ + F YFF
Sbjct: 12 AAALVLLILGLLWWPLAWIGLLLTLFCLYFF 42
Score = 29.4 bits (67), Expect = 4.5
Identities = 2/32 (6%), Positives = 7/32 (21%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFY 241
++ + F +F+
Sbjct: 11 AAAALVLLILGLLWWPLAWIGLLLTLFCLYFF 42
>gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the
nitroalkane oxidizing enzyme families, catalyzes
oxidative denitrification of nitroalkanes to their
corresponding carbonyl compounds and nitrites. NDP is a
member of the NAD(P)H-dependent flavin oxidoreductase
family that reduce a range of alternative electron
acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as
electron donor. Some contain 4Fe-4S cluster to transfer
electron from FAD to FMN.
Length = 236
Score = 30.1 bits (69), Expect = 3.0
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 122 GNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVV 160
G ++ KA G+ V +V KA GAD +V
Sbjct: 89 GPPAEVVERLKAAGIKVIPTVTSVEEARKAEAAGADALV 127
>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase. Polyketide
synthases produce polyketides in step by step mechanism
that is similar to fatty acid synthesis. Enoyl reductase
reduces a double to single bond. Erythromycin is one
example of a polyketide generated by 3 complex enzymes
(megasynthases). 2-enoyl thioester reductase (ETR)
catalyzes the NADPH-dependent dependent conversion of
trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA)
to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl
thioester reductase activity has been linked in Candida
tropicalis as essential in maintaining mitiochondrial
respiratory function. This ETR family is a part of the
medium chain dehydrogenase/reductase family, but lack
the zinc coordination sites characteristic of the
alcohol dehydrogenases in this family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. The N-terminal catalytic domain has a
distant homology to GroES. These proteins typically form
dimers (typically higher plants, mammals) or tetramers
(yeast, bacteria), and have 2 tightly bound zinc atoms
per subunit, a catalytic zinc at the active site, and a
structural zinc in a lobe of the catalytic domain.
NAD(H)-binding occurs in the cleft between the catalytic
and coenzyme-binding domains at the active site, and
coenzyme binding induces a conformational closing of
this cleft. Coenzyme binding typically precedes and
contributes to substrate binding.
Length = 303
Score = 30.1 bits (68), Expect = 3.4
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELD 168
+ + I A G GL A+Q+ + G ++A+ + LG +V+++ + +
Sbjct: 122 EHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLKQLGVPHVINYVEEDFE 178
>gnl|CDD|240077 cd04726, KGPDC_HPS, 3-Keto-L-gulonate 6-phosphate decarboxylase
(KGPDC) and D-arabino-3-hexulose-6-phosphate synthase
(HPS). KGPDC catalyzes the formation of L-xylulose
5-phosphate and carbon dioxide from 3-keto-L-gulonate
6-phosphate as part of the anaerobic pathway for
L-ascorbate utilization in some eubacteria. HPS
catalyzes the formation of
D-arabino-3-hexulose-6-phosphate from D-ribulose
5-phosphate and formaldehyde in microorganisms that can
use formaldehyde as a carbon source. Both catalyze
reactions that involve the Mg2+-assisted formation and
stabilization of 1,2-enediolate reaction intermediates.
Length = 202
Score = 29.9 bits (68), Expect = 3.4
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 126 AAIQVGKAYGLTVFA---SVGCPVGVAKAYGLGADYVVDHT 163
A++ K YG V V P AK LG D V+ H
Sbjct: 94 KAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHR 134
>gnl|CDD|131901 TIGR02854, spore_II_GA, sigma-E processing peptidase SpoIIGA.
Members of this protein family are the stage II
sporulation protein SpoIIGA. This protein acts as an
activating protease for Sigma-E, one of several
specialized sigma factors of the sporulation process in
Bacillus subtilis and related endospore-forming bacteria
[Cellular processes, Sporulation and germination].
Length = 288
Score = 30.0 bits (68), Expect = 3.6
Identities = 19/63 (30%), Positives = 21/63 (33%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFD 262
+AF K FF F F+F F F FF L I S F L
Sbjct: 74 IAFGPKSLRFFLKLLFLFYFVSFATGGGLFALHFFLATNEPALFNAFIGDGVSWKFILIG 133
Query: 263 FVI 265
F I
Sbjct: 134 FPI 136
>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family. This family
includes many hypothetical membrane proteins of unknown
function. Many of the proteins contain two copies of the
aligned region. The family used to be known as DUF6.
Length = 126
Score = 28.7 bits (65), Expect = 3.6
Identities = 10/73 (13%), Positives = 13/73 (17%), Gaps = 13/73 (17%)
Query: 187 GFTDPVYRARRKYFADLAFNYKHFFFFFFFFFFFFFFF-------------FFFYFFFFF 233
+ + + L F F F Y F
Sbjct: 4 ALYFVFSKKLLERISPLTFTAYRFLIAGILLILLLFLLRKPFALLSLKAILALLYLGLFG 63
Query: 234 FFFFYFFYFLLLS 246
Y YF L
Sbjct: 64 TALGYLLYFYALK 76
>gnl|CDD|217505 pfam03348, Serinc, Serine incorporator (Serinc). This is a family
of eukaryotic membrane proteins which incorporate serine
into membranes and facilitate the synthesis of the
serine-derived lipids phosphatidylserine and
sphingolipid. Members of this family contain 11
transmembrane domains and form intracellular complexes
with key enzymes involved in serine and sphingolipid
biosynthesis.
Length = 428
Score = 30.3 bits (69), Expect = 3.9
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 210 FFFFFFFFFFF----FFFFFFFYFFFFFFFFFYFFYFLLL 245
FF FFFF + Y F F +LL
Sbjct: 117 LLIGLIVGAFFIPNGFFFFVWMYIGVIGSFLFILIQLILL 156
>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family.
Presenilin 1 and presenilin 2 are polytopic membrane
proteins, whose genes are mutated in some individuals
with Alzheimer's disease. Distant homologues, present in
eukaryotes and archaea, also contain conserved aspartic
acid residues which are predicted to contribute to
catalysis. At least one member of this family has been
shown to possess signal peptide peptidase activity.
Length = 249
Score = 29.9 bits (68), Expect = 4.0
Identities = 6/38 (15%), Positives = 10/38 (26%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQ 247
F + FF + +F F + L
Sbjct: 19 FVLVLLYKFFKYLVIVLVIYFSSLGVLFLYSLLYPLEV 56
Score = 29.5 bits (67), Expect = 4.8
Identities = 7/42 (16%), Positives = 11/42 (26%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
N F F + F+ + YF +L
Sbjct: 5 LNSLVAIVFPIVATFVLVLLYKFFKYLVIVLVIYFSSLGVLF 46
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family. Members of this family are
involved in long chain fatty acid elongation systems
that produce the 26-carbon precursors for ceramide and
sphingolipid synthesis. Predicted to be integral
membrane proteins, in eukaryotes they are probably
located on the endoplasmic reticulum. Yeast ELO3 affects
plasma membrane H+-ATPase activity, and may act on a
glucose-signaling pathway that controls the expression
of several genes that are transcriptionally regulated by
glucose such as PMA1.
Length = 244
Score = 29.9 bits (68), Expect = 4.1
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 207 YKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFY 241
Y + F Y+ + F F F+
Sbjct: 199 YNYTKGGCGGPFPKAVRLGLVYYVSYLFLFLNFYI 233
>gnl|CDD|132773 cd06863, PX_Atg24p, The phosphoinositide binding Phox Homology
domain of yeast Atg24p, an autophagic degradation
protein. The PX domain is a phosphoinositide (PI)
binding module present in many proteins with diverse
functions. The yeast Atg24p is a sorting nexin (SNX)
which is involved in membrane fusion events at the
vacuolar surface during pexophagy. This is facilitated
via binding of Atg24p to phosphatidylinositol
3-phosphate (PI3P) through its PX domain. SNXs make up
the largest group among PX domain containing proteins.
They are involved in regulating membrane traffic and
protein sorting in the endosomal system. The PX domain
of SNXs binds PIs and targets the protein to PI-enriched
membranes. SNXs differ from each other in PI-binding
specificity and affinity, and the presence of other
protein-protein interaction domains, which help
determine subcellular localization and specific function
in the endocytic pathway.
Length = 118
Score = 28.8 bits (65), Expect = 4.1
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 159 VVDHTIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH 209
+V +ELD ++ +SY + P F+ ++ RR+Y +D F ++
Sbjct: 4 LVSDPQKELDGSSDTYISYLITTKTNLPSFSRKEFKVRRRY-SDFVFLHEC 53
Score = 28.4 bits (64), Expect = 5.5
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 352 RELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH 396
+ELD ++ +SY + P F+ ++ RR+Y +D F ++
Sbjct: 10 KELDGSSDTYISYLITTKTNLPSFSRKEFKVRRRY-SDFVFLHEC 53
>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional.
Length = 334
Score = 30.0 bits (68), Expect = 4.5
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCP--VGVAKAYGLGADYVVDHTIRELDR 169
++ I G G AA Q+ + YG + V K ++ E
Sbjct: 142 QSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLA---AIILIRYPDEEG- 197
Query: 170 FANQILS 176
FA ++
Sbjct: 198 FAPKVKK 204
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH [Cellular processes, Cell
division, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 495
Score = 29.9 bits (68), Expect = 4.6
Identities = 5/24 (20%), Positives = 6/24 (25%)
Query: 209 HFFFFFFFFFFFFFFFFFFYFFFF 232
F F +FFF
Sbjct: 1 SLLGFLFSLLPPILLLVGVWFFFR 24
>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General
function prediction only].
Length = 340
Score = 30.0 bits (68), Expect = 4.6
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAY-GLGADYVVDH 162
+T+ + A G Q+ K G V G LG D +D+
Sbjct: 152 ETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDY 203
>gnl|CDD|223701 COG0628, yhhT, Predicted permease, member of the PurR regulon
[General function prediction only].
Length = 355
Score = 29.9 bits (68), Expect = 4.7
Identities = 4/42 (9%), Positives = 6/42 (14%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
+FF +LL
Sbjct: 9 TLLLGLRILLLLLLLLLLLAILYFFQPILLPLLLALVLAYLL 50
>gnl|CDD|110319 pfam01306, LacY_symp, LacY proton/sugar symporter. This family is
closely related to the sugar transporter family.
Length = 413
Score = 29.7 bits (67), Expect = 4.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 209 HFFFFFFFFFFFFFFFFFFYFFFF 232
F+ F FFFF+FF YF FF
Sbjct: 7 TNFWMFGLFFFFYFFIMSAYFPFF 30
>gnl|CDD|223843 COG0772, FtsW, Bacterial cell division membrane protein [Cell
division and chromosome partitioning].
Length = 381
Score = 29.9 bits (68), Expect = 4.8
Identities = 9/57 (15%), Positives = 13/57 (22%), Gaps = 10/57 (17%)
Query: 199 YFADLAFNYKHFFFFFF----------FFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
Y A A + F+F F F Y ++L
Sbjct: 34 YSASSAVAERRGPFYFLIRQLVWLLLGLILALLVILRLPLRFLRKRSFAILLYVIIL 90
>gnl|CDD|177124 MTH00049, COX3, cytochrome c oxidase subunit III; Validated.
Length = 215
Score = 29.1 bits (66), Expect = 5.1
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFVI 265
F F F + + F + + +S L+Q H + + F++
Sbjct: 11 FVGFGLVGLFLWKPFILLVFLILWVLLIVIFVSDGLVQVKHHYESAFWLFIL 62
>gnl|CDD|222420 pfam13858, DUF4199, Protein of unknown function (DUF4199). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 167 and 182 amino
acids in length.
Length = 162
Score = 28.8 bits (65), Expect = 5.2
Identities = 8/54 (14%), Positives = 16/54 (29%)
Query: 194 RARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQ 247
+ RK ++ F F + + +F F F+ + Q
Sbjct: 50 KRYRKKANGGFISFGQAFKFGLLISLIAALISTVFQYIYFNFIDPGFFENYIEQ 103
>gnl|CDD|222635 pfam14264, Glucos_trans_II, Glucosyl transferase GtrII. This
family includes glucosyl transferase II from the
Shigella phage SfII, which mediates seroconversion of S.
flexneri when the phage is integrated into the host
chromosome.
Length = 317
Score = 29.5 bits (67), Expect = 5.3
Identities = 6/43 (13%), Positives = 11/43 (25%)
Query: 206 NYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQP 248
N K FF F + ++ + F +
Sbjct: 225 NIKEFFSFLKSQSGYPYYTYLLIVLLLLFLLLILLVVRKRKKR 267
>gnl|CDD|177131 MTH00059, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 289
Score = 29.5 bits (67), Expect = 5.3
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 213 FFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLS 246
F +FF FF F F F F F+ + S
Sbjct: 79 LLFSDLYFFIFFGFVVKFGLFPFMFWVYRVFSNS 112
>gnl|CDD|233780 TIGR02210, rodA_shape, rod shape-determining protein RodA. This
protein is a member of the FtsW/RodA/SpoVE family
(pfam01098). It is found only in species with rod (or
spiral) shapes. In many species, mutation of rodA has
been shown to correlate with loss of the normal rod
shape. Note that RodA homologs are found, scoring below
the cutoffs for this model, in a number of both
rod-shaped and coccoid bacteria, including four proteins
in Bacillus anthracis, for example [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan, Cellular processes, Cell division].
Length = 352
Score = 29.4 bits (67), Expect = 5.5
Identities = 12/55 (21%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 192 VYRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFY-FFFFFFFFFYFFYFLLL 245
+Y A A A K +F Y F + Y LLL
Sbjct: 19 LYSASGGSLAPFA--LKQLVWFGIGLVLMIIVALIDYRFLRRLAYPLYVLGLLLL 71
>gnl|CDD|100082 cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease (S2P), a zinc
metalloprotease (MEROPS family M50B), regulates
intramembrane proteolysis (RIP), and is involved in the
pro-sigmaK pathway of bacterial spore formation. SpoIVFB
(sporulation protein, stage IV cell wall formation, F
locus, promoter-distal B) is one of 4 proteins involved
in endospore formation; the others are SpoIVFA
(sporulation protein, stage IV cell wall formation, F
locus, promoter-proximal A), BofA (bypass-of-forespore
A), and SpoIVB (sporulation protein, stage IV cell wall
formation, B locus). SpoIVFB is negatively regulated by
SpoIVFA and BofA and activated by SpoIVB. It is thought
that SpoIVFB, SpoIVFA, and BofA are located in the
mother-cell membrane that surrounds the forespore and
that SpoIVB is secreted from the forespore into the
space between the two where it activates SpoIVFB.
Length = 208
Score = 29.0 bits (66), Expect = 5.5
Identities = 5/33 (15%), Positives = 6/33 (18%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYF 242
F F F + F Y
Sbjct: 167 QLFAILLVVLGLFLLFLGLGNLWLLLIALFIYL 199
>gnl|CDD|177217 MTH00161, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 113
Score = 28.2 bits (64), Expect = 5.6
Identities = 5/32 (15%), Positives = 7/32 (21%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFY 241
F F + FF +Y
Sbjct: 73 LPMIFIFKTSNMMSWLITSSFFILILLLGLYY 104
>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General
function prediction only].
Length = 453
Score = 29.8 bits (67), Expect = 5.6
Identities = 5/35 (14%), Positives = 7/35 (20%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
F F + FY +L
Sbjct: 251 LLAGTFLFLLRRLGRWIGPALPLLLGLLALFYAIL 285
>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase. L-threonine dehydrogenase
(TDH) catalyzes the zinc-dependent formation of
2-amino-3-ketobutyrate from L-threonine via NAD(H)-
dependent oxidation. THD is a member of the
zinc-requiring, medium chain NAD(H)-dependent alcohol
dehydrogenase family (MDR). MDRs have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The N-terminal region typically
has an all-beta catalytic domain. These proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria) and have 2 tightly bound
zinc atoms per subunit. Sorbitol and aldose reductase
are NAD(+) binding proteins of the polyol pathway, which
interconverts glucose and fructose.
Length = 341
Score = 29.5 bits (67), Expect = 5.6
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 124 GLAAIQVGKAYGL-TVFASVGCPVGVAKAYGLGADYVVD 161
GL AI V KA G V AS P + A +GAD V++
Sbjct: 176 GLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVIN 214
>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 305
Score = 29.6 bits (67), Expect = 5.7
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 115 FIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVV 160
+ GA+ G G A+Q+ G V A VG P LGA VV
Sbjct: 137 LVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVV 182
>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase.
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent
medium chain alcohol dehydrogenase, catalyzes the
NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and
meso-butanediol to acetoin. BDH functions as a
homodimer. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Sorbitol and aldose reductase are NAD(+) binding
proteins of the polyol pathway, which interconverts
glucose and fructose. Sorbitol dehydrogenase is
tetrameric and has a single catalytic zinc per subunit.
Length = 351
Score = 29.4 bits (67), Expect = 5.7
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 112 DTLFIIGANRGN-GLAAIQVGKAYGLT-VFASVGCPVGVAKAYGLGADYVVD-------H 162
DT ++GA G GL I KA G + + S A LGA V+D
Sbjct: 174 DTALVLGA--GPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVA 231
Query: 163 TIREL 167
+R+L
Sbjct: 232 EVRKL 236
>gnl|CDD|197841 smart00714, LITAF, Possible membrane-associated motif in
LPS-induced tumor necrosis factor alpha factor (LITAF),
also known as PIG7, and other animal proteins.
Length = 67
Score = 26.9 bits (60), Expect = 5.9
Identities = 4/23 (17%), Positives = 5/23 (21%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFF 232
+ F FF F
Sbjct: 23 VLAWLICFLLFFLCFCCCLPCCL 45
>gnl|CDD|235343 PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase;
Provisional.
Length = 346
Score = 29.5 bits (67), Expect = 5.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 144 CPVGVAKAYGLGADYV 159
P VAKA+G GAD+V
Sbjct: 224 VPGDVAKAFGGGADFV 239
>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase. Sorbitol and aldose
reductase are NAD(+) binding proteins of the polyol
pathway, which interconverts glucose and fructose.
Sorbitol dehydrogenase is tetrameric and has a single
catalytic zinc per subunit. Aldose reductase catalyzes
the NADP(H)-dependent conversion of glucose to sorbital,
and SDH uses NAD(H) in the conversion of sorbitol to
fructose. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 343
Score = 29.4 bits (67), Expect = 6.0
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 12/79 (15%)
Query: 112 DTLFIIGANRGN-GLAAIQVGKAYGLTVFASVGCPVGV-----AKAYGLGADYVVDHTIR 165
DT+ + GA G GL V KA+G A+ + A LGA + V+
Sbjct: 164 DTVLVFGA--GPIGLLTAAVAKAFG----ATKVVVTDIDPSRLEFAKELGATHTVNVRTE 217
Query: 166 ELDRFANQILSYGSELDAD 184
+ A +I D
Sbjct: 218 DTPESAEKIAELLGGKGPD 236
>gnl|CDD|216278 pfam01066, CDP-OH_P_transf, CDP-alcohol phosphatidyltransferase.
All of these members have the ability to catalyze the
displacement of CMP from a CDP-alcohol by a second
alcohol with formation of a phosphodiester bond and
concomitant breaking of a phosphoride anhydride bond.
Length = 97
Score = 27.6 bits (62), Expect = 6.1
Identities = 2/33 (6%), Positives = 3/33 (9%)
Query: 212 FFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
+ LL
Sbjct: 10 LLRLILGLLAALLLLLGQYLLLAALLLLLAVLL 42
>gnl|CDD|223692 COG0619, CbiQ, ABC-type cobalt transport system, permease component
CbiQ and related transporters [Inorganic ion transport
and metabolism].
Length = 252
Score = 29.3 bits (66), Expect = 6.3
Identities = 5/45 (11%), Positives = 8/45 (17%)
Query: 207 YKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQ 251
F F F F F ++ +
Sbjct: 58 PLKFLLLLLGFLLLGLLLIAFTNGFSLGPAVGLFGLGPVTIGSLV 102
>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins,
alkaline phosphatase superfamily [Cell envelope
biogenesis, outer membrane].
Length = 650
Score = 29.7 bits (67), Expect = 6.4
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 218 FFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
FF F F F + YFL P++
Sbjct: 14 FFPIFLGFGILLVFLLWLLTLLIYFLGFVLPIL 46
>gnl|CDD|220687 pfam10316, 7TM_GPCR_Srbc, Serpentine type 7TM GPCR chemoreceptor
Srbc. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srbc is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 272
Score = 29.0 bits (66), Expect = 6.4
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 194 RARRKYFADLAFNYKHFF---FFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPL 249
+ ++K D++ Y F F+ F + ++ + FF FY L S +
Sbjct: 34 KKKKK--PDMSLFYFRFALDVFYGFSVSIYLLYYILYSISPEFFVKNLIFYLGLPSSNI 90
>gnl|CDD|220572 pfam10104, Brr6_like_C_C, Di-sulfide bridge nucleocytoplasmic
transport domain. Brr6_like_C_C is the highly conserved
C-terminal region of a group of proteins found in fungi.
It carries four highly conserved cysteine residues. It
is suggested that members of the family interact with
each other via di-sulfide bridges to form a complex
which is involved in nucleocytoplasmic transport. Brr6
in yeast is an essential integral membrane protein of
the NE-ER, wit two predicted transmembrane domains, and
is a dosage suppressor of Apq12, pfam12716.
Length = 135
Score = 28.4 bits (64), Expect = 6.6
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 3/31 (9%)
Query: 204 AFNYKHFFFFFFFFFFFFFFFFFFYFFFFFF 234
++K F F F F F FF
Sbjct: 107 PLSFK---TLLFILIIFLISLFSSNFAFGFF 134
>gnl|CDD|214408 MTH00036, ATP8, ATP synthase F0 subunit 8; Validated.
Length = 54
Score = 26.6 bits (59), Expect = 6.7
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 222 FFFFFFYFFFFFFFFFYFFYFLLLSQPLIQS 252
F ++ F F + F F +LLL+ +
Sbjct: 6 FTWWLFNFLLAWSLVFIVFTYLLLNNWPSTN 36
>gnl|CDD|139556 PRK13414, PRK13414, flagellar biosynthesis protein FliZ;
Provisional.
Length = 209
Score = 29.0 bits (65), Expect = 6.8
Identities = 9/23 (39%), Positives = 9/23 (39%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFF 227
FN FF FFF F F
Sbjct: 60 FNISDLVTIVLFFLIFFFIIFLF 82
>gnl|CDD|214456 MTH00203, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 112
Score = 27.9 bits (63), Expect = 6.9
Identities = 4/31 (12%), Positives = 5/31 (16%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFF 240
FF F F+
Sbjct: 1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPD 31
>gnl|CDD|214434 MTH00149, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 97
Score = 27.5 bits (62), Expect = 7.0
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
F F F F F + + LL
Sbjct: 2 MFMLLLLSLFGFLMGVFALLFQYKHLLSILLS 33
>gnl|CDD|238179 cd00290, cytochrome_b_C, Cytochrome b(C-terminus)/b6/petD:
Cytochrome b is a subunit of cytochrome bc1, an
11-subunit mitochondrial respiratory enzyme. Cytochrome
b spans the mitochondrial membrane with 8 transmembrane
helices (A-H) in eukaryotes. In plants and
cyanobacteria, cytochrome b6 is analogous to eukaryote
cytochrome b, containing two chains: helices A-D are
encoded by the petB gene and helices E-H are encoded by
the petD gene in these organisms. Cytochrome b/b6
contains two bound hemes and two ubiquinol/ubiquinone
binding sites. The C-terminal domain is involved in
forming the ubiquinol/ubiquinone binding sites, but not
the heme binding sites. The N-terminal portion of
cytochrome b, which contains both heme binding sites,
is described in a separate CD.
Length = 147
Score = 28.4 bits (64), Expect = 7.4
Identities = 7/41 (17%), Positives = 11/41 (26%)
Query: 201 ADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFY 241
LA + F +F+ F F F+
Sbjct: 3 LGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNL 43
>gnl|CDD|204446 pfam10322, 7TM_GPCR_Sru, Serpentine type 7TM GPCR chemoreceptor
Sru. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Sru is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 307
Score = 29.1 bits (66), Expect = 7.4
Identities = 10/63 (15%), Positives = 13/63 (20%), Gaps = 24/63 (38%)
Query: 208 KHFFFFFFFFFFFFFFFFFFYFFFF------------------------FFFFFYFFYFL 243
H F FF + F F +YF Y
Sbjct: 58 PHVFLVISLSQLSNLLFFISDYLTVRLPSTGIFTSWCASQEPNHYLKLLFLFTYYFNYTS 117
Query: 244 LLS 246
+L
Sbjct: 118 MLF 120
>gnl|CDD|237042 PRK12291, PRK12291, apolipoprotein N-acyltransferase; Reviewed.
Length = 418
Score = 29.2 bits (66), Expect = 7.7
Identities = 14/51 (27%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 196 RRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFF--FFFFYFFYFLL 244
R F + F K F F F + FF Y F Y LL
Sbjct: 5 LRTNFL-IFFIIKGFLIAILFSNFIYLSFFENYISIFLSSLLALLGLYLLL 54
>gnl|CDD|224203 COG1284, COG1284, Uncharacterized conserved protein [Function
unknown].
Length = 289
Score = 29.1 bits (66), Expect = 8.1
Identities = 11/54 (20%), Positives = 12/54 (22%), Gaps = 12/54 (22%)
Query: 209 HFFFFFFFFFFFFFF---FFFFYFFFF--FFFFFYFFY-------FLLLSQPLI 250
F F FF F + F FL L Q L
Sbjct: 53 ALFGIPPFGLTFFLLNIPLFILGYKKIGKRFTLLSTIIGVLLLSLFLWLFQRLP 106
>gnl|CDD|218678 pfam05656, DUF805, Protein of unknown function (DUF805). This
family consists of several bacterial proteins of unknown
function.
Length = 112
Score = 27.6 bits (62), Expect = 8.1
Identities = 7/51 (13%), Positives = 10/51 (19%), Gaps = 1/51 (1%)
Query: 194 RARRK-YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
RA R Y+ + FN F+
Sbjct: 8 RASRSEYWWFVLFNILITLVLLILAALLSGSSSLLSGGGLLLGLISLAIFI 58
>gnl|CDD|217379 pfam03125, Sre, C. elegans Sre G protein-coupled chemoreceptor.
Caenorhabditis elegans Sre proteins are candidate
chemosensory receptors. There are four main recognised
groups of such receptors: Odr-10, Sra, Sro, and Srg. Sre
(this family), Sra pfam02117 and Srb pfam02175 comprise
the Sra group. All of the above receptors are thought to
be G protein-coupled seven transmembrane domain
proteins. The existence of several different
chemosensory receptors underlies the fact that in spite
of having only 20-30 chemosensory neurones, C. elegans
detects hundreds of different chemicals, with the
ability to discern individual chemicals among
combinations.
Length = 363
Score = 29.2 bits (66), Expect = 8.1
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 10/63 (15%)
Query: 191 PVYRARRKYFADLAFNYKHFFFFFFFFFFFF----------FFFFFFYFFFFFFFFFYFF 240
PVY +FA L + F+ + F F F F +F
Sbjct: 14 PVYFYNEPFFAQLLLSIFELLFYILCAYIVFVSLYVILKIRLFHKNLTILFIPLFGIWFE 73
Query: 241 YFL 243
+
Sbjct: 74 LII 76
>gnl|CDD|220321 pfam09624, DUF2393, Protein of unknown function (DUF2393). The
function of this protein is unknown. It is always found
as part of a two-gene operon with IPR013416, a protein
that appears to span the membrane seven times. It has so
far been found in the bacteria Nostoc sp. PCC 7120,
Agrobacterium tumefaciens, Rhizobium meliloti, and
Gloeobacter violaceus.
Length = 149
Score = 28.1 bits (63), Expect = 8.2
Identities = 2/37 (5%), Positives = 6/37 (16%), Gaps = 3/37 (8%)
Query: 210 FFFFFFFFFF---FFFFFFFFYFFFFFFFFFYFFYFL 243
F F+ + ++
Sbjct: 5 LILFLGIKLKKKSLALSLIIASIILLILIPFFGYKWI 41
>gnl|CDD|177244 MTH00197, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 323
Score = 28.9 bits (65), Expect = 8.2
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 220 FFFFFFFFYFFFFFFFFFYFFY 241
F ++ YF F F +
Sbjct: 185 IFMLYYLIYFVIMFMLFLFLSK 206
>gnl|CDD|218966 pfam06271, RDD, RDD family. This family of proteins contain three
highly conserved amino acids: one arginine and two
aspartates, hence the name of RDD family. This region
contains two predicted transmembrane regions. The
arginine occurs at the N terminus of the first helix and
the first aspartate occurs in the middle of this helix.
The molecular function of this region is unknown.
However this region may be involved in transport of an
as yet unknown set of ligands (Bateman A pers. obs.).
Length = 131
Score = 28.0 bits (63), Expect = 8.4
Identities = 5/27 (18%), Positives = 5/27 (18%)
Query: 208 KHFFFFFFFFFFFFFFFFFFYFFFFFF 234
F F F F F
Sbjct: 92 LRELLKFLLLSLLSFILLLIGFLFLLF 118
Score = 28.0 bits (63), Expect = 8.5
Identities = 5/38 (13%), Positives = 5/38 (13%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQ 247
F YF FL
Sbjct: 28 LLGALGNLADSGGLLLLLLLLLLLVFLVYFVLFLSKKG 65
>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This
group contains proteins identified as sorbitol
dehydrogenases and other sugar dehydrogenases of the
medium-chain dehydrogenase/reductase family (MDR), which
includes zinc-dependent alcohol dehydrogenase and
related proteins. Sorbitol and aldose reductase are
NAD(+) binding proteins of the polyol pathway, which
interconverts glucose and fructose. Sorbitol
dehydrogenase is tetrameric and has a single catalytic
zinc per subunit. NAD(P)(H)-dependent oxidoreductases
are the major enzymes in the interconversion of alcohols
and aldehydes, or ketones. Related proteins include
threonine dehydrogenase, formaldehyde dehydrogenase, and
butanediol dehydrogenase. The medium chain alcohol
dehydrogenase family (MDR) has a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit. Horse
liver alcohol dehydrogenase is a dimeric enzyme and each
subunit has two domains. The NAD binding domain is in a
Rossmann fold and the catalytic domain contains a zinc
ion to which substrates bind. There is a cleft between
the domains that closes upon formation of the ternary
complex.
Length = 343
Score = 28.7 bits (65), Expect = 8.9
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 112 DTLFIIGANRGN-GLAAIQVGKAYGLT-VFASVGCPVGVAKAYGLGADYVVD 161
DT+ +IGA G GL AIQ K G V A +A A LGAD ++
Sbjct: 161 DTVVVIGA--GTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTIN 210
>gnl|CDD|177252 MTH00209, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 564
Score = 29.2 bits (66), Expect = 8.9
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPF 258
+ F+ F F F F F +F + + +S PLI S F
Sbjct: 1 FKKMQMFSLMLLFLFSFLMFVIFMWFQKIVILEWELL---SLNSMSISFPLIIDKMSLLF 57
Query: 259 SLFDFVI 265
S +I
Sbjct: 58 SSVVLLI 64
>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose
phosphotransferase. This family of proteins encompasses
the E. coli WcaJ protein involved in colanic acid
biosynthesis , the Methylobacillus EpsB protein involved
in methanolan biosynthesis , as well as the GumD protein
involved in the biosynthesis of xanthan. All of these
are closely related to the well-characterized WbaP
(formerly RfbP) protein which is the first enzyme in
O-antigen biosynthesis in Salmonella typhimurium. The
enzyme transfers galactose from UDP-galactose (NOTE: not
glucose) to a polyprenyl carrier (utilizing the highly
conserved C-terminal sugar transferase domain,
pfam02397) a reaction which takes place at the
cytoplasmic face of the inner membrane. The N-terminal
hydrophobic domain is then believed to facilitate the
"flippase" function of transferring the liposaccharide
unit from the cytoplasmic face to the periplasmic face
of the inner membrane. Most of these genes are found
within large operons dedicated to the production of
complex exopolysaccharides such as the enterobacterial
O-antigen. Colanic acid biosynthesis utilizes a
glucose-undecaprenyl carrier , knockout of EpsB
abolishes incorporation of UDP-glucose into the lipid
phase and the C-terminal portion of GumD has been shown
to be responsible for the glucosyl-1-transferase
activity.
Length = 451
Score = 29.1 bits (66), Expect = 9.7
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 193 YRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFF---FFFFFFFYFFYFLLLS 246
+R R + L + F F + F + +F LLL
Sbjct: 54 WRRRSRLREMLLRILLAWTLTFLILALLAFLLKYGTEFSRLWLLLWFLLALALLLLG 110
>gnl|CDD|217735 pfam03798, TRAM_LAG1_CLN8, TLC domain.
Length = 198
Score = 28.4 bits (64), Expect = 9.7
Identities = 9/54 (16%), Positives = 11/54 (20%)
Query: 197 RKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
RK+ L F F FF F + P
Sbjct: 120 RKFLNYLGKKKSCDVLFVLFLVSFFLVRLVLGPFLILLSILDEARLDIPGGPFN 173
>gnl|CDD|237159 PRK12651, PRK12651, putative monovalent cation/H+ antiporter
subunit E; Reviewed.
Length = 158
Score = 27.9 bits (63), Expect = 9.8
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 205 FNYKHFFFFFFFFFFFFFFF--FF---FYFFFFFFFFFYFFYFL 243
F+ +F F F F F FY + FL
Sbjct: 22 FSLGNFIIGFILGLFVLFLFRRLLPARFYLRRIYKLIKLVPIFL 65
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.143 0.452
Gapped
Lambda K H
0.267 0.0865 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,710,370
Number of extensions: 3744143
Number of successful extensions: 25000
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17521
Number of HSP's successfully gapped: 1225
Length of query: 655
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 552
Effective length of database: 6,369,140
Effective search space: 3515765280
Effective search space used: 3515765280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (27.4 bits)