RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14589
(655 letters)
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid
hydroxylase, phosphorylation, intrasteric regulation,
allosteric regulation; 2.20A {Rattus norvegicus} SCOP:
d.58.18.3 d.178.1.1 PDB: 2phm_A
Length = 429
Score = 250 bits (640), Expect = 1e-76
Identities = 174/294 (59%), Positives = 208/294 (70%), Gaps = 31/294 (10%)
Query: 264 VIFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMV--ECAPGGDLSSVI 321
+IFS +EVGALAK L+LF+++++NL HIESR S ++ YEF + L S+I
Sbjct: 37 LIFSLK-EEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSII 95
Query: 322 ESLRSSCSYINIISRNHNQFHGVPWFPRRIRELDRFANQILSYGSELDADHPGFTDPVYR 381
+SLR+ + + VPWFPR I+ELDRFANQILSYG+ELDADHPGF DPVYR
Sbjct: 96 KSLRNDIGATVHELSRDKEKNTVPWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYR 155
Query: 382 ARRKYFADLAFNYKHSI----------------LLM------------PEHNHVFPLLIQ 413
ARRK FAD+A+NY+H + EHNH+FPLL +
Sbjct: 156 ARRKQFADIAYNYRHGQPIPRVEYTEEEKQTWGTVFRTLKALYKTHACYEHNHIFPLLEK 215
Query: 414 NCGYAEDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKP 473
CG+ EDNIPQLED+S+FL+ TGF LRPVAGLLSSRDFL GLAFRVFH TQYIRH SKP
Sbjct: 216 YCGFREDNIPQLEDVSQFLQTCTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKP 275
Query: 474 LYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGAPDEYVERLATSNNFMI 527
+YTPEPD+CHELLGHVPLF+D SFAQFSQEIGLASLGAPDEY+E+LAT F +
Sbjct: 276 MYTPEPDICHELLGHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLATIYWFTV 329
Score = 143 bits (361), Expect = 3e-37
Identities = 83/113 (73%), Positives = 94/113 (83%)
Query: 2 EPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDIS 61
+P+PRV+YT EE +TWG VFR L LY THAC EHNH+FPLL + CG+ EDNIPQLED+S
Sbjct: 172 QPIPRVEYTEEEKQTWGTVFRTLKALYKTHACYEHNHIFPLLEKYCGFREDNIPQLEDVS 231
Query: 62 KFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDTL 114
+FL+ TGF LRPVAGLLSSRDFL GLAFRVFH TQYIRH SKP+YTPEPD
Sbjct: 232 QFLQTCTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDIC 284
Score = 111 bits (278), Expect = 2e-26
Identities = 75/135 (55%), Positives = 85/135 (62%), Gaps = 10/135 (7%)
Query: 481 VCHELLGHVPLFADPSFAQFSQEIGLASLGAPDEYVERLATSNNFMIVPRLASLSPDSTG 540
V L A + G ++ + +L + F+ TG
Sbjct: 190 VFRTLKALYKTHACYEHNH-IFPLLEKYCGFREDNIPQLEDVSQFLQ---------TCTG 239
Query: 541 FSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSF 600
F LRPVAGLLSSRDFL GLAFRVFH TQYIRH SKP+YTPEPD+CHELLGHVPLF+D SF
Sbjct: 240 FRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSDRSF 299
Query: 601 AQFSQEIGLASLGAP 615
AQFSQEIGLASLGAP
Sbjct: 300 AQFSQEIGLASLGAP 314
Score = 57.8 bits (139), Expect = 6e-09
Identities = 40/49 (81%), Positives = 45/49 (91%)
Query: 161 DHTIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH 209
TI+ELDRFANQILSYG+ELDADHPGF DPVYRARRK FAD+A+NY+H
Sbjct: 122 PRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRH 170
>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate
facial triad, tetrahydrobiopterin, oxidoreductase; HET:
H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A*
1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 4anp_A* 2pah_A 1pah_A
3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A*
Length = 325
Score = 213 bits (542), Expect = 1e-63
Identities = 145/225 (64%), Positives = 169/225 (75%), Gaps = 29/225 (12%)
Query: 331 INIISRNHNQFHGVPWFPRRIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADL 390
++ +SR+ + VPWFPR I+ELDRFANQILSYG+ELDADHPGF DPVYRARRK FAD+
Sbjct: 4 VHELSRD-KKKDTVPWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADI 62
Query: 391 AFNYKHSI----------------LLM------------PEHNHVFPLLIQNCGYAEDNI 422
A+NY+H + E+NH+FPLL + CG+ EDNI
Sbjct: 63 AYNYRHGQPIPRVEYMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNI 122
Query: 423 PQLEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVC 482
PQLED+S+FL+ TGF LRPVAGLLSSRDFL GLAFRVFH TQYIRH SKP+YTPEPD+C
Sbjct: 123 PQLEDVSQFLQTCTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDIC 182
Query: 483 HELLGHVPLFADPSFAQFSQEIGLASLGAPDEYVERLATSNNFMI 527
HELLGHVPLF+D SFAQFSQEIGLASLGAPDEY+E+LAT F +
Sbjct: 183 HELLGHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLATIYWFTV 227
Score = 140 bits (353), Expect = 5e-37
Identities = 81/113 (71%), Positives = 93/113 (82%)
Query: 2 EPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDIS 61
+P+PRV+Y EE KTWG VF+ L LY THAC E+NH+FPLL + CG+ EDNIPQLED+S
Sbjct: 70 QPIPRVEYMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDVS 129
Query: 62 KFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDTL 114
+FL+ TGF LRPVAGLLSSRDFL GLAFRVFH TQYIRH SKP+YTPEPD
Sbjct: 130 QFLQTCTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDIC 182
Score = 107 bits (267), Expect = 1e-25
Identities = 75/113 (66%), Positives = 82/113 (72%), Gaps = 8/113 (7%)
Query: 511 APDEYVERLATSNNFMI-----VPRLASLSP---DSTGFSLRPVAGLLSSRDFLAGLAFR 562
A EY + +P+L +S TGF LRPVAGLLSSRDFL GLAFR
Sbjct: 100 ACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQTCTGFRLRPVAGLLSSRDFLGGLAFR 159
Query: 563 VFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGAP 615
VFH TQYIRH SKP+YTPEPD+CHELLGHVPLF+D SFAQFSQEIGLASLGAP
Sbjct: 160 VFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSDRSFAQFSQEIGLASLGAP 212
Score = 62.0 bits (150), Expect = 2e-10
Identities = 39/46 (84%), Positives = 44/46 (95%)
Query: 164 IRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH 209
I+ELDRFANQILSYG+ELDADHPGF DPVYRARRK FAD+A+NY+H
Sbjct: 23 IQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRH 68
>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis,
non-heme iron, P substrate; 2.30A {Rattus norvegicus}
SCOP: d.178.1.1 PDB: 2toh_A* 2xsn_A
Length = 343
Score = 211 bits (537), Expect = 8e-63
Identities = 115/212 (54%), Positives = 141/212 (66%), Gaps = 28/212 (13%)
Query: 344 VPWFPRRIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKHSI----- 398
VPWFPR++ ELD+ + + + +LD DHPGF+D VYR RRK A++AF YKH
Sbjct: 9 VPWFPRKVSELDKCHHLVTKFDPDLDLDHPGFSDQVYRQRRKLIAEIAFQYKHGEPIPHV 68
Query: 399 -----------------------LLMPEHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDS 435
EH F LL + CGY ED+IPQLED+S+FLK+
Sbjct: 69 EYTAEEIATWKEVYVTLKGLYATHACREHLEGFQLLERYCGYREDSIPQLEDVSRFLKER 128
Query: 436 TGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADP 495
TGF LRPVAGLLS+RDFLA LAFRVF TQYIRH S P+++PEPD CHELLGHVP+ AD
Sbjct: 129 TGFQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDCCHELLGHVPMLADR 188
Query: 496 SFAQFSQEIGLASLGAPDEYVERLATSNNFMI 527
+FAQFSQ+IGLASLGA DE +E+L+T F +
Sbjct: 189 TFAQFSQDIGLASLGASDEEIEKLSTVYWFTV 220
Score = 140 bits (353), Expect = 6e-37
Identities = 76/114 (66%), Positives = 89/114 (78%)
Query: 1 GEPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDI 60
GEP+P V+YTAEE TW EV+ L LY THAC+EH F LL + CGY ED+IPQLED+
Sbjct: 62 GEPIPHVEYTAEEIATWKEVYVTLKGLYATHACREHLEGFQLLERYCGYREDSIPQLEDV 121
Query: 61 SKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDTL 114
S+FLK+ TGF LRPVAGLLS+RDFLA LAFRVF TQYIRH S P+++PEPD
Sbjct: 122 SRFLKERTGFQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDCC 175
Score = 104 bits (260), Expect = 2e-24
Identities = 63/91 (69%), Positives = 74/91 (81%), Gaps = 3/91 (3%)
Query: 528 VPRLASLSP---DSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDV 584
+P+L +S + TGF LRPVAGLLS+RDFLA LAFRVF TQYIRH S P+++PEPD
Sbjct: 115 IPQLEDVSRFLKERTGFQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDC 174
Query: 585 CHELLGHVPLFADPSFAQFSQEIGLASLGAP 615
CHELLGHVP+ AD +FAQFSQ+IGLASLGA
Sbjct: 175 CHELLGHVPMLADRTFAQFSQDIGLASLGAS 205
Score = 65.1 bits (158), Expect = 2e-11
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 163 TIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH 209
+ ELD+ + + + +LD DHPGF+D VYR RRK A++AF YKH
Sbjct: 15 KVSELDKCHHLVTKFDPDLDLDHPGFSDQVYRQRRKLIAEIAFQYKH 61
>1mlw_A Tryptophan 5-monooxygenase; aromatic amino acid hydroxylase
catalytic domain fold, oxidoreductase; HET: HBI; 1.71A
{Homo sapiens} SCOP: d.178.1.1 PDB: 3hf6_A* 3hf8_A*
3hfb_A* 3e2t_A*
Length = 301
Score = 201 bits (512), Expect = 1e-59
Identities = 130/212 (61%), Positives = 148/212 (69%), Gaps = 28/212 (13%)
Query: 344 VPWFPRRIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKHSI----- 398
VPWFP++I +LD AN++L YGSELDADHPGF D VYR RRKYFADLA NYKH
Sbjct: 4 VPWFPKKISDLDHCANRVLMYGSELDADHPGFKDNVYRKRRKYFADLAMNYKHGDPIPKV 63
Query: 399 -----------LLM------------PEHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDS 435
+ E+ PLL + CGY EDNIPQLED+S FLK+
Sbjct: 64 EFTEEEIKTWGTVFRELNKLYPTHACREYLKNLPLLSKYCGYREDNIPQLEDVSNFLKER 123
Query: 436 TGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADP 495
TGFS+RPVAG LS RDFL+GLAFRVFH TQY+RH S P YTPEPD CHELLGHVPL A+P
Sbjct: 124 TGFSIRPVAGYLSPRDFLSGLAFRVFHCTQYVRHSSDPFYTPEPDTCHELLGHVPLLAEP 183
Query: 496 SFAQFSQEIGLASLGAPDEYVERLATSNNFMI 527
SFAQFSQEIGLASLGA +E V++LAT F +
Sbjct: 184 SFAQFSQEIGLASLGASEEAVQKLATCYFFTV 215
Score = 140 bits (355), Expect = 1e-37
Identities = 79/113 (69%), Positives = 92/113 (81%)
Query: 2 EPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDIS 61
+P+P+V++T EE KTWG VFR L KLYPTHAC+E+ PLL + CGY EDNIPQLED+S
Sbjct: 58 DPIPKVEFTEEEIKTWGTVFRELNKLYPTHACREYLKNLPLLSKYCGYREDNIPQLEDVS 117
Query: 62 KFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDTL 114
FLK+ TGFS+RPVAG LS RDFL+GLAFRVFH TQY+RH S P YTPEPDT
Sbjct: 118 NFLKERTGFSIRPVAGYLSPRDFLSGLAFRVFHCTQYVRHSSDPFYTPEPDTC 170
Score = 105 bits (262), Expect = 4e-25
Identities = 73/123 (59%), Positives = 86/123 (69%), Gaps = 8/123 (6%)
Query: 500 FSQEIGLASLGAPDEYVERLATSNNFMI-----VPRLASLSP---DSTGFSLRPVAGLLS 551
F + L A EY++ L + + +P+L +S + TGFS+RPVAG LS
Sbjct: 77 FRELNKLYPTHACREYLKNLPLLSKYCGYREDNIPQLEDVSNFLKERTGFSIRPVAGYLS 136
Query: 552 SRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLAS 611
RDFL+GLAFRVFH TQY+RH S P YTPEPD CHELLGHVPL A+PSFAQFSQEIGLAS
Sbjct: 137 PRDFLSGLAFRVFHCTQYVRHSSDPFYTPEPDTCHELLGHVPLLAEPSFAQFSQEIGLAS 196
Query: 612 LGA 614
LGA
Sbjct: 197 LGA 199
Score = 58.2 bits (140), Expect = 2e-09
Identities = 35/47 (74%), Positives = 38/47 (80%)
Query: 164 IRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKHF 210
I +LD AN++L YGSELDADHPGF D VYR RRKYFADLA NYKH
Sbjct: 11 ISDLDHCANRVLMYGSELDADHPGFKDNVYRKRRKYFADLAMNYKHG 57
>1ltz_A Phenylalanine-4-hydroxylase; oxidoreductase, dihydrobiopterin,
bacterial enzyme; HET: HBI; 1.40A {Chromobacterium
violaceum} SCOP: d.178.1.1 PDB: 1ltv_A 1ltu_A*
Length = 297
Score = 164 bits (417), Expect = 3e-46
Identities = 43/182 (23%), Positives = 69/182 (37%), Gaps = 24/182 (13%)
Query: 370 ADHPGFTDPVYRARRKY-FADLAFNYKHSI---------------------LLMPEHNH- 406
D F P R+ + A ++ L+P
Sbjct: 2 NDRADFVVPDITTRKNVGLSHDANDFTLPQPLDRYSAEDHATWATLYQRQCKLLPGRACD 61
Query: 407 VFPLLIQNCGYAEDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQY 466
F ++ D +P +++ L +TG+ + V GL+ F LA R F T +
Sbjct: 62 EFLEGLERLEVDADRVPDFNKLNEKLMAATGWKIVAVPGLIPDDVFFEHLANRRFPVTWW 121
Query: 467 IRHPSKPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGA-PDEYVERLATSNNF 525
+R P + Y EPDV H+L GHVPL +P FA + + G + A + LA +
Sbjct: 122 LREPHQLDYLQEPDVFHDLFGHVPLLINPVFADYLEAYGKGGVKAKALGALPMLARLYWY 181
Query: 526 MI 527
+
Sbjct: 182 TV 183
Score = 135 bits (340), Expect = 2e-35
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 1 GEPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDI 60
P P Y+AE+ TW +++ KL P AC E D +P +
Sbjct: 28 TLPQPLDRYSAEDHATWATLYQRQCKLLPGRACDEFLEGLER----LEVDADRVPDFNKL 83
Query: 61 SKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDTL 114
++ L +TG+ + V GL+ F LA R F T ++R P + Y EPD
Sbjct: 84 NEKLMAATGWKIVAVPGLIPDDVFFEHLANRRFPVTWWLREPHQLDYLQEPDVF 137
Score = 111 bits (279), Expect = 3e-27
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 19/148 (12%)
Query: 475 YTPE-----PDVCHELLGHVPLFADPSFAQFSQEIGLASLGAPDEYVERLATSNNFMIVP 529
Y+ E + +P A F + GL L + V N ++
Sbjct: 36 YSAEDHATWATLYQRQCKLLPGRACDEFLE-----GLERLEVDADRVPDFNKLNEKLM-- 88
Query: 530 RLASLSPDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELL 589
+TG+ + V GL+ F LA R F T ++R P + Y EPDV H+L
Sbjct: 89 -------AATGWKIVAVPGLIPDDVFFEHLANRRFPVTWWLREPHQLDYLQEPDVFHDLF 141
Query: 590 GHVPLFADPSFAQFSQEIGLASLGAPYL 617
GHVPL +P FA + + G + A L
Sbjct: 142 GHVPLLINPVFADYLEAYGKGGVKAKAL 169
Score = 47.7 bits (113), Expect = 5e-06
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 183 ADHPGFTDPVYRARRKY-FADLAFNYKH 209
D F P R+ + A ++
Sbjct: 2 NDRADFVVPDITTRKNVGLSHDANDFTL 29
>2v27_A Phenylalanine hydroxylase; cold adaptation, tetrahydrobiopterin,
stability, flexibility, alkaptonuria, oxidoreductase;
1.50A {Colwellia psychrerythraea 34H} PDB: 2v28_A
Length = 275
Score = 132 bits (333), Expect = 8e-35
Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 13/149 (8%)
Query: 379 VYRARRKYFADLAFNYKHSILLMPEHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDSTGF 438
++ + D A E++ D IPQL+++SK LK STG+
Sbjct: 31 LFTRQIACIKDKAC---------DEYHEGLAK----LNLPTDRIPQLDEVSKVLKVSTGW 77
Query: 439 SLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSFA 498
PV L+ +F L+ + F +IR + Y EPD+ HE+ GH PL + SFA
Sbjct: 78 ECYPVPALIGFGEFFRLLSEKKFPVATFIRSREEMDYLQEPDIFHEIFGHCPLLTNSSFA 137
Query: 499 QFSQEIGLASLGAPDEYVERLATSNNFMI 527
+++ G L A E LA F I
Sbjct: 138 NYTEAYGKMGLNATKEQRVFLARLYWFTI 166
Score = 127 bits (320), Expect = 4e-33
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 1 GEPLPR----VDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQ 56
+P ++++ EE W E+F AC E++ D IPQ
Sbjct: 8 VSKVPDEHGFIEWSTEENLIWQELFTRQIACIKDKACDEYHEGLAK----LNLPTDRIPQ 63
Query: 57 LEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDTL 114
L+++SK LK STG+ PV L+ +F L+ + F +IR + Y EPD
Sbjct: 64 LDEVSKVLKVSTGWECYPVPALIGFGEFFRLLSEKKFPVATFIRSREEMDYLQEPDIF 121
Score = 106 bits (266), Expect = 7e-26
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 19/165 (11%)
Query: 456 LAFRVFHSTQYIRHPSKPLYTPE-----PDVCHELLGHVPLFADPSFAQFSQEIGLASLG 510
+A + ++ ++ E ++ + + A + + GLA L
Sbjct: 1 MAKGTKYVSKVPDEHGFIEWSTEENLIWQELFTRQIACIKDKACDEYHE-----GLAKLN 55
Query: 511 APDEYVERLATSNNFMIVPRLASLSPDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYI 570
P + + +L + + STG+ PV L+ +F L+ + F +I
Sbjct: 56 LPTDRIPQLDEVSKVLK---------VSTGWECYPVPALIGFGEFFRLLSEKKFPVATFI 106
Query: 571 RHPSKPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGAP 615
R + Y EPD+ HE+ GH PL + SFA +++ G L A
Sbjct: 107 RSREEMDYLQEPDIFHEIFGHCPLLTNSSFANYTEAYGKMGLNAT 151
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 56.4 bits (137), Expect = 1e-08
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
+++ + GA+ G GLAA Q+ +AYGL + + G G GA V +H
Sbjct: 172 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHR 223
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 56.4 bits (137), Expect = 1e-08
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
+T+ ++GA G G AAIQ+ K G V A V +GAD V+
Sbjct: 161 ETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLE 212
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 54.5 bits (132), Expect = 3e-08
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELDR 169
+ + + A G AA+QV +A GL V A+ P +A LGA+ + E+
Sbjct: 127 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATY--AEVPE 182
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 54.2 bits (131), Expect = 6e-08
Identities = 8/52 (15%), Positives = 16/52 (30%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
+ I + K G +V +A +GA +V++
Sbjct: 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEK 217
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 54.1 bits (131), Expect = 6e-08
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
D + ++ A G +AAIQ+ K +G V A+ G + +A LGAD V++T
Sbjct: 168 DDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYT 219
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 53.8 bits (130), Expect = 7e-08
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
TL II G G A Q+ KAYGL V + + +GAD V++H
Sbjct: 152 KTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHK 203
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 53.4 bits (129), Expect = 1e-07
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT-------I 164
D L + G Q+ + + A + LGA YV+D + +
Sbjct: 146 DVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETV 205
Query: 165 REL 167
EL
Sbjct: 206 MEL 208
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 53.2 bits (128), Expect = 1e-07
Identities = 16/68 (23%), Positives = 20/68 (29%), Gaps = 5/68 (7%)
Query: 112 DTLFII-GANRGNGLAAIQVGKAYGLTVFASVGCPVG----VAKAYGLGADYVVDHTIRE 166
FI G G A Q+GK + + VA LGA V+
Sbjct: 168 KDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNN 227
Query: 167 LDRFANQI 174
F I
Sbjct: 228 SREFGPTI 235
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase
(PDT), staphylococcus aureu aureus MU50, structural
genomics, PSI-2; 2.30A {Staphylococcus aureus subsp}
SCOP: c.94.1.1 d.58.18.3
Length = 267
Score = 51.4 bits (124), Expect = 3e-07
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 263 FVIFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAPGGDLS---- 318
F+I H D+ G LA L F N+NL IESR Y F V+ ++
Sbjct: 191 FLITPMH-DKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD--SAITTDIK 247
Query: 319 SVIESLRSSCSYINII 334
VI L + + +I
Sbjct: 248 KVIAILETLDFKVEMI 263
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 52.1 bits (125), Expect = 3e-07
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
D + I GA+ G G AIQ K G A V A LG D V++
Sbjct: 222 DIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRA 273
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 51.9 bits (125), Expect = 3e-07
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAK----AYGLGADYVVDHT 163
D++ +N G G A IQ+ A GL V + K LGA++V+
Sbjct: 169 DSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEE 224
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 51.7 bits (124), Expect = 5e-07
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELDRFA 171
D + I GA+ G G A Q A G V P +GA+ ++D +
Sbjct: 230 DNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWK 289
Query: 172 NQILSYGSELDADHPGFTDPVYRARRKYFADLAFN 206
++ ++ + F + D+ F
Sbjct: 290 DE----NTQDPKEWKRFGKRIRELTGGEDIDIVFE 320
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 6e-07
Identities = 54/370 (14%), Positives = 107/370 (28%), Gaps = 108/370 (29%)
Query: 310 ECAPGGDLSSVIESLRSSCSYINIISRNHNQFHGVPWFPRRIRE-LDRFANQIL------ 362
A + ++ E + Y++ + F + + L F N L
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ----FDQVLNLCLTEFENCYLEGNDIH 102
Query: 363 SYGSELDADHPGFTDPVYRARRKYFADLAF------NYKHSILLM---PEHNHVFPLLI- 412
+ ++L ++ + Y +S L + + I
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV--AIF 160
Query: 413 --QNCGYAEDNIPQLEDISK----FLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQY 466
Q G +D +L D+ + + D FS ++ L+ + + + + ++
Sbjct: 161 GGQ--GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 467 IRHPSKPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGAPDEYVERLATSNNFM 526
+ +PS TP+ D L +P+ S IG+ L +++
Sbjct: 219 LENPSN---TPDKDY----LLSIPI----SCPL----IGVIQLA-------------HYV 250
Query: 527 IVPRLASLSPDSTGFSLRP-VAGLLS-SRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDV 584
+ +L +P LR + G S+ + +A
Sbjct: 251 VTAKLLGFTPG----ELRSYLKGATGHSQGLVTAVAIAE--------------------- 285
Query: 585 CHELLGHVPLFADPSFAQFSQEIGLASLGAPYLFY--YVCHELLGHVPLFADPSFAQFSQ 642
D S+ F LF+ C+E + L PS + S
Sbjct: 286 -----------TD-SWESFFV---SVRKAITVLFFIGVRCYEAYPNTSL--PPSILEDSL 328
Query: 643 EIGLASLGAP 652
E G P
Sbjct: 329 ENN---EGVP 335
Score = 33.9 bits (77), Expect = 0.20
Identities = 40/201 (19%), Positives = 58/201 (28%), Gaps = 87/201 (43%)
Query: 412 IQNCG-----YAEDNIPQ--LEDISKFLKDSTGFSLRPV--------------AGLLSSR 450
Q G Y Q KD+ GFS+ + R
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 451 DFLAGLAF-----------RVF-----HSTQYI-RHPSKPLYTPE---PDV------CHE 484
+ + + F ++F HST Y R L + P + E
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 485 LL---GHVPLFADPSFAQFSQEIGLASLGAPDEYVERLATSNNFMIVPRLASLSPDSTGF 541
L G +P AD +FA G SLG EY A LAS
Sbjct: 1746 DLKSKGLIP--ADATFA------GH-SLG---EYA---A----------LAS-------- 1772
Query: 542 SLRPVAGLLSSRDFLAGLAFR 562
+A ++S + + +R
Sbjct: 1773 ----LADVMSIESLVEVVFYR 1789
Score = 30.4 bits (68), Expect = 2.5
Identities = 30/158 (18%), Positives = 44/158 (27%), Gaps = 60/158 (37%)
Query: 44 IQNCG-----YAEDNIPQ--LEDISKFLKDSTGFSLRPV--------------AGLLSSR 82
Q G Y Q KD+ GFS+ + R
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 83 DFLAGLAF-----------RVF-----HSTQYI-RHPSKPLYTPE---PDTLFIIGANRG 122
+ + + F ++F HST Y R L + P L ++
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP-ALTLM----- 1739
Query: 123 NGLAAIQVGKAYGLT----VFA--SVG------CPVGV 148
AA + K+ GL FA S+G V
Sbjct: 1740 -EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV 1776
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 50.0 bits (120), Expect = 1e-06
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
+ + A G G A+Q+ K V + A LG D +++
Sbjct: 165 KKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYK 216
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 49.9 bits (120), Expect = 1e-06
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
+++ I G G G AIQ+ +A+G V+A+ G LGA +++
Sbjct: 169 ESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYR 220
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics,
midwest center for ST genomics, protein structure
initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter
aurescens}
Length = 313
Score = 49.5 bits (119), Expect = 1e-06
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 242 FLLLSQPLIQSCHSCPF--SLFDFVIFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSST 299
F+L+S+P + ++ + +D GAL + L F VNL IESR +
Sbjct: 184 FILVSRPGALPERTGADKTTV----VVPLPEDHPGALMEILDQFASRGVNLSRIESRPTG 239
Query: 300 RIENNYEFMVECAPGGDLS-----SVIESLRSSCSYINI 333
+ +Y F ++ G + + L
Sbjct: 240 QYLGHYFFSIDAD--GHATDSRVADALAGLHRISPATRF 276
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 49.3 bits (118), Expect = 2e-06
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 104 KPLYTPEPDTLFIIGANRGNGLAAIQVGKA-YGLTVFASVGCPVGVAKAYGLGADYVVDH 162
+ I+G G G A+Q+ + LTV A+ P LGA +V+DH
Sbjct: 165 NKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDH 224
Query: 163 T 163
+
Sbjct: 225 S 225
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 49.5 bits (119), Expect = 2e-06
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELDRFA 171
D + I G G AAIQ+ + G + G + A LGA ++ ++ D F+
Sbjct: 164 DYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNY--KKED-FS 220
Query: 172 NQILSY 177
L +
Sbjct: 221 EATLKF 226
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 47.6 bits (114), Expect = 7e-06
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
D + + G G L +Q+ KA G V + + +A+ LGAD+ ++
Sbjct: 191 DRVVVQGTG-GVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRL 241
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 47.8 bits (114), Expect = 7e-06
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
+ I+GA+ G G AIQV KA+ V A V LGAD V+D+
Sbjct: 185 KRVLILGASGGVGTFAIQVMKAWDAHVTA-VCSQDASELVRKLGADDVIDYK 235
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NAD binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 47.4 bits (113), Expect = 8e-06
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Query: 86 AGLAFRVFHSTQYIRHPSKPLYTPEPDTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCP 145
AGLA ++ +P +P + + G + +Q+ + G A+ P
Sbjct: 140 AGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCS-P 198
Query: 146 VGVAKAYGLGADYVVDHTIRELDRFANQILSYGSE 180
A GA+ V D+ A I +Y
Sbjct: 199 HNFDLAKSRGAEEVFDYR---APNLAQTIRTYTKN 230
>3luy_A Probable chorismate mutase; structural genomics, APC38059,
3-phenylp PSI-2, protein structure initiative; HET: PPY;
2.00A {Bifidobacterium adolescentis}
Length = 329
Score = 46.5 bits (111), Expect = 2e-05
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 9/101 (8%)
Query: 242 FLLLSQPLIQSCHSCPFSLFDF------VIFSNHQDEVGALAKTLKLFKKHNVNLLHIES 295
FL+LS + + G LA L +F+ +N+ S
Sbjct: 182 FLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFIS 241
Query: 296 RSSTRIENNYEFMVEC-APGGD--LSSVIESLRSSCSYINI 333
R Y F+V A + + + +
Sbjct: 242 RPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT 282
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 46.1 bits (109), Expect = 2e-05
Identities = 9/52 (17%), Positives = 14/52 (26%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
L A G Q+ G+ + V GA +V +
Sbjct: 173 SALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVHVCNAA 224
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 45.7 bits (109), Expect = 3e-05
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
D + I G G AIQ+ K G TV + A LGA+ +++
Sbjct: 154 DVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS-KRNHAFLKALGAEQCINYH 204
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL
tepidum TLS, structural genomics, PSI-2, protein
structure initiative; HET: PHE; 2.30A {Chlorobium
tepidum tls}
Length = 283
Score = 44.1 bits (105), Expect = 6e-05
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 264 VIFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAPGGDLSS---- 319
++F+ +E G+L + L F ++L IESR S + Y F + G
Sbjct: 203 IVFA-LPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI--GHREDQNVH 259
Query: 320 -VIESLRSSCSYINII 334
+E+LR + + ++
Sbjct: 260 NALENLREFATMVKVL 275
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 43.4 bits (103), Expect = 2e-04
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
T+ I G G G AIQ+ A G VFA+ + LGA +
Sbjct: 152 QTVLIQGGGGGVGHVAIQIALARGARVFATAR-GSDLEYVRDLGATPIDASR 202
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 43.0 bits (102), Expect = 2e-04
Identities = 8/52 (15%), Positives = 14/52 (26%), Gaps = 2/52 (3%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
+ I+G Q+ G V + A A G ++
Sbjct: 144 REVLIVGFG-AVNNLLTQMLNNAGYVVDLVSA-SLSQALAAKRGVRHLYREP 193
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 43.2 bits (102), Expect = 3e-04
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELDRFA 171
++L + A G G+AAIQ+ + G V+A+ +A L +++ R D F
Sbjct: 347 ESLLVHSAAGGVGMAAIQLARHLGAEVYATASED--KWQAVELSREHLASS--RTCD-FE 401
Query: 172 NQIL 175
Q L
Sbjct: 402 QQFL 405
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 42.2 bits (100), Expect = 3e-04
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
D + I A G G + + G TV +V A LG + ++++
Sbjct: 147 DYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYS 198
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 41.8 bits (99), Expect = 4e-04
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
+ A G GL A Q KA G + +VG A GA V+++
Sbjct: 142 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYR 193
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 41.0 bits (96), Expect = 5e-04
Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 11/71 (15%)
Query: 196 RRKY--FADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFF---------YFLL 244
R+KY + + + + ++ + F + F +F+
Sbjct: 61 RKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVN 120
Query: 245 LSQPLIQSCHS 255
P CH
Sbjct: 121 FYSPGCSHCHD 131
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 41.4 bits (98), Expect = 6e-04
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
D + + A G GL Q+ K G A + A GA+Y+++ +
Sbjct: 150 DYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINAS 201
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 41.1 bits (97), Expect = 7e-04
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 112 DTLFIIGANRGNGLAAIQVGKA-YGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
TL ++GA G G A+Q+ KA G T+ V A GADYV++ +
Sbjct: 172 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINAS 224
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 41.0 bits (97), Expect = 8e-04
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHT 163
+ + A G G A Q KA G + +V P A A LGA +D++
Sbjct: 142 EIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYS 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.003
Identities = 76/531 (14%), Positives = 135/531 (25%), Gaps = 183/531 (34%)
Query: 15 KTW--GEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLED----ISKFLKDST 68
KTW +V + CK +F L ++NC E + L+ I +
Sbjct: 163 KTWVALDVCLSYKVQ-----CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 69 GFSLRPVAGLLSSRDFLAGLAFRVFHSTQY---------IRHP---------SKPLYTPE 110
S + S + L R+ S Y +++ K L T
Sbjct: 218 DHSSNIKLRIHSIQAELR----RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-- 271
Query: 111 PDTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLG--ADYVVDHTIRELD 168
T R + T + + + Y +D ++L
Sbjct: 272 --T-------RFKQVTDFLSAATT--THISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLP 319
Query: 169 RFANQI----LSYGSELDADHPGFTDPVYRARRKYFADLAFNYKHFFFFFFFFFFFFFFF 224
R LS +E D A + + N
Sbjct: 320 REVLTTNPRRLSIIAESIRDGL--------ATWDNWKHV--NCDKL-------------- 355
Query: 225 FFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSC--PF---SLF-DFVIFSNHQDEVGALAK 278
+I+S + P +F +F
Sbjct: 356 ----------------------TTIIESSLNVLEPAEYRKMFDRLSVF---PPSAHIPTI 390
Query: 279 TLKLF--------KKHNVNLLHIESRSSTRIENNYEFMVECAPGGDLSSVIESLRSSCSY 330
L L VN LH + S + E + + S+ L+
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLH---KYSLVEKQPKESTIS------IPSIYLELKVKL-- 439
Query: 331 INIISRNHNQFHGVPWFPRRIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADL 390
N H R I + Y D P +YF
Sbjct: 440 -----ENEYALH------RSIVD---------HYNIPKTFDSDDLIPP---YLDQYF--- 473
Query: 391 AFNY--KH-SILLMPEHNHVFPLL------IQN-----------CGYAEDNIPQLEDISK 430
+++ H + PE +F ++ ++ G + + QL+
Sbjct: 474 -YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 431 FLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHS--TQYIR----HPSKPLY 475
++ D+ R V +L DFL + + S T +R + ++
Sbjct: 533 YICDNDPKYERLVNAIL---DFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 39.1 bits (90), Expect = 0.005
Identities = 48/318 (15%), Positives = 92/318 (28%), Gaps = 101/318 (31%)
Query: 265 IFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAPGGDLSSVIESL 324
+ + ++ L ++F K+NV +R++ P L + L
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNV----------SRLQ----------PYLKLRQALLEL 147
Query: 325 RSSCSYINIISRNHNQFHGVPWF---------PRRIRELDRFANQI--LSYGSELDAD-- 371
R + + I GV + + +I L+ + +
Sbjct: 148 RPA-KNVLI--------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 372 --------HPGFTDPVYRARRKYFADLAFNYKHSI--------LLMPEHNHVFPLLIQNC 415
+ DP + +R +D + N K I L+ + LL+
Sbjct: 199 LEMLQKLLYQ--IDPNWTSR----SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-- 250
Query: 416 GYAEDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQY---IRHPSK 472
N+ + + F S + LL++R + + +T + H S
Sbjct: 251 ----LNVQNAKAWNAF-----NLSCKI---LLTTRF--KQVTDFLSAATTTHISLDHHSM 296
Query: 473 PLYTPEPDVCHELLG---HVPLFADPSFAQFSQEIGLASLGAPDEYVERLATSNNF---- 525
L E LL P + L+ + + LAT +N+
Sbjct: 297 TLTPDEVK---SLLLKYLDCRPQDLPREVLTTNPRRLSIIAE--SIRDGLATWDNWKHVN 351
Query: 526 ------MIVPRLASLSPD 537
+I L L P
Sbjct: 352 CDKLTTIIESSLNVLEPA 369
Score = 37.9 bits (87), Expect = 0.011
Identities = 57/487 (11%), Positives = 114/487 (23%), Gaps = 202/487 (41%)
Query: 1 GEPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDI 60
+ + + R L K K + + LL+ N+ +
Sbjct: 217 SDHSSNIKLRIHSIQAE---LRRLLKS------KPYENC--LLVL------LNVQNAKAW 259
Query: 61 SKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQY---IRHPSKPLYTPEPDTLF-- 115
+ F S + LL++R + + +T + H S L E +L
Sbjct: 260 NAF-----NLSCKI---LLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 116 ----------------------IIGANRGNGLA---------------AIQVG------- 131
II + +GLA I+
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 132 ---KAY-GLTVF-ASVGCPVGVAKAYGLGADYVVDHTIRELDRFANQIL--------SYG 178
K + L+VF S P + + +++ L +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTIS 427
Query: 179 ------------SELDADHPGFTDPVYRARRKY-----FADLAFNYKHFFFFFFFFFFFF 221
A H D Y + + Y
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQY-------------- 472
Query: 222 FFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFVIFSNHQDEVGALAKTLK 281
F+ + + H + + +
Sbjct: 473 -------------FYSHIGH---------------------------HLKNIE-HPERMT 491
Query: 282 LFKKHNVNLLHIESRSSTRIENNYEFMVECAPGGDLSSVIESLRSSCSYINIISRNHNQF 341
LF+ ++ +E + I ++ G + + ++ L+ Y I N ++
Sbjct: 492 LFRMVFLDFRFLEQK----IRHD---STAWNASGSILNTLQQLKF---YKPYICDNDPKY 541
Query: 342 HGVPWFPRRIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKHSILLM 401
R + + F + L ++ + DL I LM
Sbjct: 542 E------RLVNAILDF---LPKIEENL-----------ICSK---YTDLL-----RIALM 573
Query: 402 PEHNHVF 408
E +F
Sbjct: 574 AEDEAIF 580
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 38.7 bits (90), Expect = 0.008
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCP----VGVAKAYGLGADYVVDHTIREL 167
+++ I + G G AAI + + G VF +VG A+ L + R+
Sbjct: 1669 ESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANS--RDT 1726
Query: 168 DRFANQIL 175
F +L
Sbjct: 1727 S-FEQHVL 1733
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 37.6 bits (88), Expect = 0.009
Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 5/54 (9%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAK--AYGLGADYVVDHT 163
++ + A G G A Q+ K A ++ D
Sbjct: 144 MSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA---STFKHEAIKDSVTHLFDRN 194
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 36.4 bits (85), Expect = 0.014
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELDRFA 171
+ + I A G G+AA+ + K G ++ + G LG +YV D R +D FA
Sbjct: 40 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDS--RSVD-FA 96
Query: 172 NQIL 175
++IL
Sbjct: 97 DEIL 100
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 35.2 bits (81), Expect = 0.023
Identities = 10/83 (12%), Positives = 22/83 (26%), Gaps = 4/83 (4%)
Query: 190 DPVYRAR--RKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQ 247
+ + + D N + + ++ Y +
Sbjct: 71 NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEE 130
Query: 248 PLIQSCHSCPFSLFDFVIFSNHQ 270
+ SC +C SL ++ NH
Sbjct: 131 VSLISCDTC--SLIIELLHYNHH 151
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 35.7 bits (83), Expect = 0.040
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 103 SKPLYTPEPDTLFIIGANRGNGLAAIQVGKA--YGLTVFASVGCPVGVAKAYGLGADYVV 160
+ P + + + I+ G + IQ+ KA +T+ A LGADYV
Sbjct: 162 ALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVS 221
Query: 161 DHT-----IREL 167
+ I +L
Sbjct: 222 EMKDAESLINKL 233
>2a9g_A Arginine deiminase; arginine degradation pathway, catalyti
mechanism, hydrolase; HET: ARG; 2.30A {Pseudomonas
aeruginosa} SCOP: d.126.1.4 PDB: 1rxx_A 2abr_A* 2aci_A
2aaf_A*
Length = 418
Score = 36.0 bits (82), Expect = 0.040
Identities = 28/188 (14%), Positives = 53/188 (28%), Gaps = 19/188 (10%)
Query: 341 FHGVPWFPRRIRELDRFANQILSYGSEL----DADHPGFTDPVYRARR-------KYFAD 389
F V W + R+ F ++ G ++ + +P
Sbjct: 42 FDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEALKWILDRKITADSVGL 101
Query: 390 LAFNYKHSILLMPEHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDSTG---FSLRPVAGL 446
+ S L E + LI + + +I K ++ G F L P+
Sbjct: 102 GLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNT 161
Query: 447 LSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGL 506
+RD + V + P E + + P FA+ F + +
Sbjct: 162 QFTRDTTCWIYGGVT-----LNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDK 216
Query: 507 ASLGAPDE 514
+ E
Sbjct: 217 DHGSSTLE 224
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center
monooxygenase; 1.70A {Methylococcus capsulatus str}
SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C
1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C
1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ...
Length = 384
Score = 35.1 bits (80), Expect = 0.059
Identities = 14/117 (11%), Positives = 27/117 (23%), Gaps = 3/117 (2%)
Query: 169 RFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFY 228
A I L PGF + + ++ + + F +
Sbjct: 183 DIAQMIQLERGFLAKIVPGFDESTAVPKAEWTNGEVYK---SARLAVEGLWQEVFDWNES 239
Query: 229 FFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFVIFSNHQDEVGALAKTLKLFKK 285
F + F + + + +L F I A L+
Sbjct: 240 AFSVHAVYDALFGQFVRREFFQRLAPRFGDNLTPFFINQAQTYFQIAKQGVQDLYYN 296
>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5-
helix bundle domain, raction intermediate; HET: ARG;
1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A*
Length = 410
Score = 34.4 bits (78), Expect = 0.10
Identities = 18/172 (10%), Positives = 43/172 (25%), Gaps = 11/172 (6%)
Query: 329 SYINIISRNHNQFHGVPWFPRRIRELDRFANQILSYGSE------LDADHPGFTDPVYRA 382
YI + F + +E +F ++ + L A+ +
Sbjct: 33 DYITPARLDELLFSAILESHDARKEHKQFVAELKANDINVVELIDLVAETYDLASQEAKD 92
Query: 383 RRKYFADLAFNYKHSILLMPEHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDSTGFSLRP 442
+ S + + E + + ++ + P
Sbjct: 93 KLIEEFLEDSEPVLSEEHKVVVRNFLKAKKTSRELVEIMMAGITKYDLGIEADHELIVDP 152
Query: 443 VAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFAD 494
+ L +RD A + V I + + E + + P +
Sbjct: 153 MPNLYFTRDPFASVGNGVT-----IHYMRYKVRQRETLFSRFVFSNHPKLIN 199
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 32.6 bits (75), Expect = 0.33
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYG-LTVFA-SVGCPVGVAKAYGLGADYVVD 161
+ I+G G G A+Q+ K TV A V + A LGAD+VVD
Sbjct: 188 AYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVK-EEKLKLAERLGADHVVD 237
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 32.3 bits (74), Expect = 0.35
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 95 STQYIRHPSKPLYTPEPD---TLFIIGANRGNGLA---AIQVGKAYGLTVFASVGCPVGV 148
S+ + H S L P ++ I G NRG GL A+ +F +
Sbjct: 3 SSHHHHHHSSGL-VPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA 61
Query: 149 AKAYGLGADYVVDHTIRELD 168
+ L ++ H + E+D
Sbjct: 62 KELEDLAKNHSNIHIL-EID 80
>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher
plant, zinc ION, hydrolase; 2.80A {Arabidopsis thaliana}
PDB: 1zy0_A 1zy1_A
Length = 197
Score = 32.2 bits (74), Expect = 0.37
Identities = 14/86 (16%), Positives = 21/86 (24%), Gaps = 10/86 (11%)
Query: 119 ANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELDRFAN-QILSY 177
G GLAA Q+G + V + +L N +
Sbjct: 44 LAPGVGLAAPQIGVPLRIIVL---EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKER 100
Query: 178 GSELDADH------PGFTDPVYRARR 197
++ GF V R
Sbjct: 101 SNKKALFFEGCLSVDGFRAAVERYLE 126
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_B* 3b8e_B*
Length = 305
Score = 32.4 bits (73), Expect = 0.42
Identities = 9/51 (17%), Positives = 14/51 (27%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFV 264
+F F F+ F+ F L +P Q + P
Sbjct: 33 WFKIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKYQDRVAPPGLSHAPY 83
Score = 30.1 bits (67), Expect = 2.3
Identities = 5/51 (9%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 187 GFTDPVY-RARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFF 236
G+ ++ ++++ ++ F F+ F+ F
Sbjct: 12 GWKKFLWDSEKKEFLGRTGSSWFKIFLFYLIFYGCLAGIFIGTIQVLLLTL 62
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 32.4 bits (74), Expect = 0.43
Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 91 RVFHSTQYIRHPSKPLYTPEPDTLFIIGANRGN-GLAAIQVGKAYGLT-VFASVGCPVGV 148
+ + + + T + ++G G G+ + + YGL A+ P V
Sbjct: 161 EILEVQKRVPVWTCDDGTLNCRKVLVVGT--GPIGVLFTLLFRTYGLEVWMANRREPTEV 218
Query: 149 AKAYGLGADYVVDHTIRELDRFANQ 173
+ ++ D+ +
Sbjct: 219 EQTVIEETKTNYYNSSNGYDKLKDS 243
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 32.3 bits (74), Expect = 0.52
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 112 DTLFIIGANRGN-GLAAIQVGKAYGLT-VFASVGCPVGVAKAYGLGADYVVD 161
D + I+G G GLAA+ + K G + V S V A LGAD+V+D
Sbjct: 215 DNVVILGG--GPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVID 264
>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron,
metal-bindi mitochondrion, protein biosynthesis, transit
peptide; HET: BB2; 1.70A {Homo sapiens} PDB: 3g5p_A
Length = 183
Score = 31.4 bits (72), Expect = 0.57
Identities = 16/86 (18%), Positives = 24/86 (27%), Gaps = 10/86 (11%)
Query: 119 ANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELDRFAN-QILSY 177
R GL+A Q+G + P + + + L F N +
Sbjct: 45 RRRCVGLSAPQLGVPRQVLAL---ELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVL 101
Query: 178 GSELDADH------PGFTDPVYRARR 197
S L GF V R +
Sbjct: 102 DSRLVTFPEGCESVAGFLACVPRFQA 127
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 31.8 bits (73), Expect = 0.70
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 112 DTLFIIGANRGN-GLAAIQVGKAYGLTVFAS--VGCPVGVAKAYGLGADYVVDHTIRELD 168
T+ +IGA G GL ++ KAYG V + + VAK G VVD E
Sbjct: 170 TTVLVIGA--GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEES 227
Query: 169 RFANQI 174
+I
Sbjct: 228 SIIERI 233
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 31.1 bits (70), Expect = 1.1
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYF 239
F +F + + F F FF +F
Sbjct: 217 FRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF 251
Score = 28.4 bits (63), Expect = 7.9
Identities = 9/74 (12%), Positives = 18/74 (24%), Gaps = 2/74 (2%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPF 258
+D K+ + F FF F F + + + C +
Sbjct: 65 LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI--YLGFCFNAGA 122
Query: 259 SLFDFVIFSNHQDE 272
+ I +
Sbjct: 123 PAVEAFIEKVSRRS 136
Score = 28.4 bits (63), Expect = 8.9
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 216 FFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQP 248
+F + + F F F+ +
Sbjct: 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATG 254
Score = 28.4 bits (63), Expect = 9.4
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFF 240
+F + + + F FF FF
Sbjct: 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFF 251
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 31.0 bits (71), Expect = 1.1
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYG-LTVFASVGCPVGV-----AKAYGLGADYVVD 161
T +IG G G IQ+ +A V A V + A A +GAD V
Sbjct: 173 STAVVIGVG-GLGHVGIQILRAVSAARVIA-----VDLDDDRLALAREVGADAAVK 222
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism,
TYRR protei nucleotide-binding, transcription
regulation, activator; HET: PG4; 2.30A {Escherichia
coli}
Length = 190
Score = 30.3 bits (68), Expect = 1.3
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 270 QDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAPGGDLSSVIESLRS 326
+D +G + L L ++L IE RI N+ + SS++ +R
Sbjct: 8 EDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEF----ESFSSLMAEIRR 60
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 30.3 bits (69), Expect = 1.7
Identities = 6/44 (13%), Positives = 9/44 (20%), Gaps = 3/44 (6%)
Query: 196 RRKY--FADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFF 237
R +Y + F + F F F
Sbjct: 86 RAEYDQLWQHRNDP-GFGRQRQTHEQSYSQQDFDDIFSSMFGQQ 128
Score = 29.9 bits (68), Expect = 2.5
Identities = 11/79 (13%), Positives = 17/79 (21%), Gaps = 24/79 (30%)
Query: 168 DRF-----ANQILSYGSELDADHPGFTDPVYRAR----RKYFADLAFNYKHFFFFFFFFF 218
+F A ++L D RA ++ D F +
Sbjct: 68 AKFKDLAEAWEVLK-------------DEQRRAEYDQLWQHRNDPGFG--RQRQTHEQSY 112
Query: 219 FFFFFFFFFYFFFFFFFFF 237
F F F
Sbjct: 113 SQQDFDDIFSSMFGQQAHQ 131
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 30.4 bits (69), Expect = 1.8
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 108 TPEPDTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVD 161
+PE ++ + GA G G A+ + G V AS G LGA V+
Sbjct: 148 SPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVIS 201
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 30.2 bits (69), Expect = 1.9
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 112 DTLFIIGANRGN-GLAAIQVGKAYGLT-VFASVGCPVGVAKAYGLGADYVVD 161
++ I GA G GL I V KA G V S A +GADYV++
Sbjct: 169 KSVLITGA--GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVIN 218
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto
reductase; rossmann fold, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Cavia
porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A*
2dm6_A* 1zsv_A 2y05_A*
Length = 333
Score = 30.2 bits (69), Expect = 2.3
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 112 DTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELDRFA 171
+T+ + A G Q+ K G V + G +A +G D ++ + ++
Sbjct: 147 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNY--KTVNSLE 204
Query: 172 NQI 174
+
Sbjct: 205 EAL 207
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure
INIT midwest center for structural genomics, MCSG,
unknown funct; 1.90A {Streptococcus pneumoniae} SCOP:
d.58.18.7
Length = 91
Score = 28.1 bits (63), Expect = 2.3
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 270 QDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNY--EFMVECAPGGDLSSVIESL 324
+D+ G +A + +N+ I S T ++ + +V D + +
Sbjct: 13 KDKSGIVAGVSGKIAELGLNIDDI---SQTVLDEYFTMMAVVSSDEKQDFTYLRNEF 66
>1wd3_A Alpha-L-arabinofuranosidase B; beta-sandwich, beta-trefoil,
hydrolase; HET: NAG; 1.75A {Aspergillus kawachii} SCOP:
b.29.1.21 b.42.8.1 PDB: 1wd4_A* 2d44_A* 2d43_A*
Length = 482
Score = 30.0 bits (67), Expect = 2.6
Identities = 34/163 (20%), Positives = 53/163 (32%), Gaps = 35/163 (21%)
Query: 462 HSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSFA-----QFSQEIGLASLGAPDEYV 516
++T+YI H + T D L + S+ SQ S+ P Y+
Sbjct: 342 YTTRYIAHTDTTVNTQVVDD----DSSTTLKEEASWTVVTGLANSQCFSFESVDTPGSYI 397
Query: 517 ERLATSNNFMIVPRLASLSPDSTGF----SLRPVAGLLSSRDFLAGLAFRVF-HSTQYIR 571
NF ++ + + + F + P A L G + R + + T+Y R
Sbjct: 398 ----RHYNFELL---LNANDGTKQFHEDATFCPQAALNGE-----GTSLRSWSYPTRYFR 445
Query: 572 HPSKPLYTPEPDVCHELLGHVPLFADPSFAQ---FSQEIGLAS 611
H LY G + SF F E AS
Sbjct: 446 HYENVLYAASNG------GVQTFDSKTSFNNDVSFEIETAFAS 482
Score = 28.1 bits (62), Expect = 9.3
Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 18/87 (20%)
Query: 426 EDISKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVF-HSTQYIRHPSKPLYTPEPDVCHE 484
+ +F +D+T P A L G + R + + T+Y RH LY
Sbjct: 410 DGTKQFHEDAT---FCPQAALNGE-----GTSLRSWSYPTRYFRHYENVLYAASNG---- 457
Query: 485 LLGHVPLFADPSFAQ---FSQEIGLAS 508
G + SF F E AS
Sbjct: 458 --GVQTFDSKTSFNNDVSFEIETAFAS 482
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 29.9 bits (68), Expect = 2.9
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 112 DTLFIIGANRGN-GLAAIQVGKAYGLT-VFASVGCPVGVAKAYGLGADYVVD 161
T+ I+G G GL +Q+ + G T V S A +GA VD
Sbjct: 184 STVAILGG--GVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVD 233
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics,
protein structure initiative, MCSG; HET: DTY; 2.80A
{Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Length = 328
Score = 29.6 bits (67), Expect = 3.2
Identities = 18/54 (33%), Positives = 23/54 (42%)
Query: 108 TPEPDTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVD 161
TPE + + GA G G A+ + G TV AS G LGA V+
Sbjct: 147 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLA 200
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 29.5 bits (67), Expect = 3.3
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 116 IIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAK---AYGLGADYVVDHT 163
I GA G G A+Q KA G V +G G K +G + +D T
Sbjct: 175 ISGAAGGLGSLAVQYAKAMGYRV---LGIDGGEGKEELFRSIGGEVFIDFT 222
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 29.5 bits (67), Expect = 3.4
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 112 DTLFIIGANRGN-GLAAIQVGKAYG-LTVFASVGCPVGVAKAYGLGADYVVD 161
+ IIGA G GL AIQ A G +V A +A A GA +
Sbjct: 162 KNVIIIGA--GTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFN 211
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical,
heterotrimeric membrane protein complex, ATP- hydrolase,
ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa}
PDB: 3n2f_B* 3n23_B*
Length = 286
Score = 29.3 bits (65), Expect = 3.5
Identities = 7/44 (15%), Positives = 13/44 (29%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCP 257
+F F+ F+ F + +P Q + P
Sbjct: 15 WFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDRVAPP 58
>3hh0_A Transcriptional regulator, MERR family; protein structure
initiative II(PSI II), NYSGXRC, 11183J, structural
genomics; 2.67A {Bacillus cereus atcc 14579}
Length = 146
Score = 28.5 bits (64), Expect = 3.5
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 49 YAEDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDF 84
Y +D++ L+ I + K GFSL + ++ RD
Sbjct: 43 YTKDDLYVLQQI-QSFKH-LGFSLGEIQNIILQRDI 76
Score = 28.5 bits (64), Expect = 3.5
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 417 YAEDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDF 452
Y +D++ L+ I + K GFSL + ++ RD
Sbjct: 43 YTKDDLYVLQQI-QSFKH-LGFSLGEIQNIILQRDI 76
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta
monomeric protein, structural genomics, PSI, protein
structure initiative; HET: MES; 2.00A {Escherichia coli}
SCOP: c.50.1.2
Length = 184
Score = 28.7 bits (65), Expect = 3.9
Identities = 11/24 (45%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 143 GCPVGVAK---AYGLGADYVVDHT 163
CP G A A L A VV HT
Sbjct: 59 DCPTGHAVITLAGDLPAKAVV-HT 81
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition,
juxtamembrane domain, transferase; 2.10A {Homo sapiens}
SCOP: d.144.1.7
Length = 344
Score = 29.2 bits (66), Expect = 4.1
Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 277 AKTLKLFKKH-N-VNLLHIESRSSTRIENNYEFMVECAPGGDLSSVIESLRSSCSYINII 334
K + H N VNLL T Y + E GDL + + S R S I
Sbjct: 99 LKMMTQLGSHENIVNLLGA----CTLSGPIY-LIFEYCCYGDLLNYLRSKREKFSEDEIE 153
Query: 335 SRNHNQFHGVPWFPR-RIRELDRFANQI 361
N + +L FA Q+
Sbjct: 154 YENQKRLEEEEDLNVLTFEDLLCFAYQV 181
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 29.3 bits (65), Expect = 4.2
Identities = 7/71 (9%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPF 258
+ + ++ F + + FF ++ + + + P C +
Sbjct: 34 FTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDH---IEDPSWTPCVTNLN 90
Query: 259 SLFDFVIFSNH 269
+FS
Sbjct: 91 GFVSAFLFSIE 101
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr
B556(FDN) subunit; oxidoreductase, selenium,
selenocysteine, seCys, molybdenum; HET: MGD HEM CDL;
1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Length = 217
Score = 29.0 bits (64), Expect = 4.5
Identities = 5/69 (7%), Positives = 9/69 (13%), Gaps = 2/69 (2%)
Query: 200 FADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFF--YFLLLSQPLIQSCHSCP 257
+ + F F F F + +
Sbjct: 52 MGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVEVLKGNEHKVADVGKYNA 111
Query: 258 FSLFDFVIF 266
F
Sbjct: 112 GQKMMFWSI 120
Score = 28.2 bits (62), Expect = 6.8
Identities = 7/42 (16%), Positives = 9/42 (21%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFF 240
L + FF F F F F +
Sbjct: 39 TLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNI 80
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Length = 490
Score = 29.3 bits (65), Expect = 5.0
Identities = 6/43 (13%), Positives = 12/43 (27%)
Query: 186 PGFTDPVYRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFY 228
P F + +F + F + F +F +
Sbjct: 343 PTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKW 385
Score = 28.5 bits (63), Expect = 8.7
Identities = 5/30 (16%), Positives = 8/30 (26%)
Query: 212 FFFFFFFFFFFFFFFFYFFFFFFFFFYFFY 241
FF F + F +F +
Sbjct: 356 FFKGVTQQPLTFITYSAFILVTGIWFADKW 385
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD
protease, aspartyl protease, intramembrane proteolysis;
3.60A {Methanococcus maripaludis}
Length = 237
Score = 28.5 bits (63), Expect = 5.9
Identities = 8/77 (10%), Positives = 16/77 (20%), Gaps = 12/77 (15%)
Query: 204 AFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFF------------FFYFFYFLLLSQPLIQ 251
+ + F F Y F + + + L
Sbjct: 51 SITLLDYSILINSISGFVICFILGYMMFLSGIGGGDGKMLIGLGALVPKFQMPIYTSLGT 110
Query: 252 SCHSCPFSLFDFVIFSN 268
+ F ++F N
Sbjct: 111 LLNLNYVPTFPIMVFIN 127
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 28.8 bits (65), Expect = 6.4
Identities = 0/18 (0%), Positives = 0/18 (0%)
Query: 210 FFFFFFFFFFFFFFFFFF 227
Sbjct: 48 PGSAGNDEENQPNNRPPQ 65
>3qu1_A Peptide deformylase 2; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding; 1.80A
{Vibrio cholerae}
Length = 171
Score = 27.8 bits (63), Expect = 7.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 119 ANRGNGLAAIQVG 131
+ G GLAA QVG
Sbjct: 44 TDNGIGLAAPQVG 56
>2x47_A Macro domain-containing protein 1; signaling protein, signal
transduction, estrogen signaling; 1.70A {Homo sapiens}
Length = 235
Score = 28.1 bits (63), Expect = 7.7
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 143 GCPVGVAK---AYGLGADYVVDHT 163
C G AK Y L A YV+ HT
Sbjct: 114 SCKTGKAKITGGYRLPAKYVI-HT 136
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 8.5
Identities = 4/30 (13%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 294 ESRSSTRIENNYE-FMVECAPGGDLSSVIE 322
E ++ +++ + + + + AP + + +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome,
protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris}
Length = 476
Score = 28.4 bits (63), Expect = 8.6
Identities = 5/35 (14%), Positives = 9/35 (25%)
Query: 200 FADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFF 234
F + + H + F FF +
Sbjct: 351 FGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGS 385
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 28.6 bits (65), Expect = 8.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 345 PWFPRRIRELDRFANQILSYG-SELDADHPGFTDPVYRARRKYFAD 389
WF +I EL R ++ G + L+AD + + +RK FAD
Sbjct: 460 RWFLVQIEELVRLEEKVAEVGITGLNADF------LRQLKRKGFAD 499
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix
bundle, carboxylate bridge, metalloenzyme,
oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri}
SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B
3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B
3rne_B 3rnf_B* 3rng_B 2ind_B*
Length = 322
Score = 28.1 bits (62), Expect = 9.3
Identities = 10/83 (12%), Positives = 17/83 (20%), Gaps = 13/83 (15%)
Query: 151 AYGLGADYVVDHTIRELD--RFANQILSYGSELDADHPGF-----------TDPVYRARR 197
+ T D R+ EL +P DP ++ R
Sbjct: 137 QIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRERDVWENDPAWQGFR 196
Query: 198 KYFADLAFNYKHFFFFFFFFFFF 220
+ + F
Sbjct: 197 ELIEKALIAWDWGEAFTAINLVT 219
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 28.1 bits (63), Expect = 9.8
Identities = 6/30 (20%), Positives = 6/30 (20%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFF 240
F FF F F F
Sbjct: 44 RNFQQFFGDDSPFCQEGSPFQSSPFCQGGQ 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.143 0.452
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,564,186
Number of extensions: 670509
Number of successful extensions: 3572
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3246
Number of HSP's successfully gapped: 172
Length of query: 655
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 555
Effective length of database: 3,909,693
Effective search space: 2169879615
Effective search space used: 2169879615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)