RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14589
(655 letters)
>d1j8ua_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Human (Homo
sapiens) [TaxId: 9606]}
Length = 307
Score = 255 bits (654), Expect = 1e-80
Identities = 143/206 (69%), Positives = 160/206 (77%), Gaps = 28/206 (13%)
Query: 344 VPWFPRRIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH------- 396
VPWFPR I+ELDRFANQILSYG+ELDADHPGF DPVYRARRK FAD+A+NY+H
Sbjct: 1 VPWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPRV 60
Query: 397 ----------------SILLMP-----EHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDS 435
L E+NH+FPLL + CG+ EDNIPQLED+S+FL+
Sbjct: 61 EYMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQTC 120
Query: 436 TGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADP 495
TGF LRPVAGLLSSRDFL GLAFRVFH TQYIRH SKP+YTPEPD+CHELLGHVPLF+D
Sbjct: 121 TGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSDR 180
Query: 496 SFAQFSQEIGLASLGAPDEYVERLAT 521
SFAQFSQEIGLASLGAPDEY+E+LAT
Sbjct: 181 SFAQFSQEIGLASLGAPDEYIEKLAT 206
Score = 162 bits (412), Expect = 8e-46
Identities = 82/112 (73%), Positives = 94/112 (83%)
Query: 1 GEPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDI 60
G+P+PRV+Y EE KTWG VF+ L LY THAC E+NH+FPLL + CG+ EDNIPQLED+
Sbjct: 54 GQPIPRVEYMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDV 113
Query: 61 SKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPD 112
S+FL+ TGF LRPVAGLLSSRDFL GLAFRVFH TQYIRH SKP+YTPEPD
Sbjct: 114 SQFLQTCTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPD 165
Score = 121 bits (305), Expect = 4e-31
Identities = 83/174 (47%), Positives = 94/174 (54%), Gaps = 25/174 (14%)
Query: 450 RDFLAGLAFRVFHSTQYIRHPSKPLYTPEP-----DVCHELLGHVPLFADPSFAQFSQEI 504
R A +A+ + Q I Y E V L A + +
Sbjct: 41 RKQFADIAYN-YRHGQPIPRVE---YMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLL 96
Query: 505 GLASLGAPDEYVERLATSNNFMIVPRLASLSP---DSTGFSLRPVAGLLSSRDFLAGLAF 561
D +P+L +S TGF LRPVAGLLSSRDFL GLAF
Sbjct: 97 EKYCGFHEDN-------------IPQLEDVSQFLQTCTGFRLRPVAGLLSSRDFLGGLAF 143
Query: 562 RVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGAP 615
RVFH TQYIRH SKP+YTPEPD+CHELLGHVPLF+D SFAQFSQEIGLASLGAP
Sbjct: 144 RVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSDRSFAQFSQEIGLASLGAP 197
Score = 92.1 bits (229), Expect = 5e-21
Identities = 39/46 (84%), Positives = 44/46 (95%)
Query: 164 IRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH 209
I+ELDRFANQILSYG+ELDADHPGF DPVYRARRK FAD+A+NY+H
Sbjct: 8 IQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRH 53
>d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 336
Score = 250 bits (639), Expect = 4e-78
Identities = 114/206 (55%), Positives = 140/206 (67%), Gaps = 28/206 (13%)
Query: 344 VPWFPRRIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH------- 396
VPWFPR++ ELD+ + + + +LD DHPGF+D VYR RRK A++AF YKH
Sbjct: 2 VPWFPRKVSELDKCHHLVTKFDPDLDLDHPGFSDQVYRQRRKLIAEIAFQYKHGEPIPHV 61
Query: 397 ---------------------SILLMPEHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDS 435
+ EH F LL + CGY ED+IPQLED+S+FLK+
Sbjct: 62 EYTAEEIATWKEVYVTLKGLYATHACREHLEGFQLLERYCGYREDSIPQLEDVSRFLKER 121
Query: 436 TGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADP 495
TGF LRPVAGLLS+RDFLA LAFRVF TQYIRH S P+++PEPD CHELLGHVP+ AD
Sbjct: 122 TGFQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDCCHELLGHVPMLADR 181
Query: 496 SFAQFSQEIGLASLGAPDEYVERLAT 521
+FAQFSQ+IGLASLGA DE +E+L+T
Sbjct: 182 TFAQFSQDIGLASLGASDEEIEKLST 207
Score = 159 bits (403), Expect = 3e-44
Identities = 76/112 (67%), Positives = 89/112 (79%)
Query: 1 GEPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDI 60
GEP+P V+YTAEE TW EV+ L LY THAC+EH F LL + CGY ED+IPQLED+
Sbjct: 55 GEPIPHVEYTAEEIATWKEVYVTLKGLYATHACREHLEGFQLLERYCGYREDSIPQLEDV 114
Query: 61 SKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPD 112
S+FLK+ TGF LRPVAGLLS+RDFLA LAFRVF TQYIRH S P+++PEPD
Sbjct: 115 SRFLKERTGFQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPD 166
Score = 117 bits (294), Expect = 2e-29
Identities = 75/172 (43%), Positives = 98/172 (56%), Gaps = 23/172 (13%)
Query: 450 RDFLAGLAFRVFHSTQ--YIRHPSKPLYTPEP-----DVCHELLGHVPLFADPSFAQFSQ 502
R +A +AF+ H ++ YT E +V L G A +
Sbjct: 42 RKLIAEIAFQYKHGEPIPHVE------YTAEEIATWKEVYVTLKGLYATHACREHLE-GF 94
Query: 503 EIGLASLGAPDEYVERLATSNNFMIVPRLASLSPDSTGFSLRPVAGLLSSRDFLAGLAFR 562
++ G ++ + +L + F+ + TGF LRPVAGLLS+RDFLA LAFR
Sbjct: 95 QLLERYCGYREDSIPQLEDVSRFL---------KERTGFQLRPVAGLLSARDFLASLAFR 145
Query: 563 VFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGA 614
VF TQYIRH S P+++PEPD CHELLGHVP+ AD +FAQFSQ+IGLASLGA
Sbjct: 146 VFQCTQYIRHASSPMHSPEPDCCHELLGHVPMLADRTFAQFSQDIGLASLGA 197
Score = 92.9 bits (231), Expect = 3e-21
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 164 IRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH 209
+ ELD+ + + + +LD DHPGF+D VYR RRK A++AF YKH
Sbjct: 9 VSELDKCHHLVTKFDPDLDLDHPGFSDQVYRQRRKLIAEIAFQYKH 54
>d1mlwa_ d.178.1.1 (A:) Tryptophan hydroxylase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 290
Score = 244 bits (624), Expect = 1e-76
Identities = 129/206 (62%), Positives = 145/206 (70%), Gaps = 28/206 (13%)
Query: 344 VPWFPRRIRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH------- 396
VPWFP++I +LD AN++L YGSELDADHPGF D VYR RRKYFADLA NYKH
Sbjct: 2 VPWFPKKISDLDHCANRVLMYGSELDADHPGFKDNVYRKRRKYFADLAMNYKHGDPIPKV 61
Query: 397 ---------------------SILLMPEHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDS 435
E+ PLL + CGY EDNIPQLED+S FLK+
Sbjct: 62 EFTEEEIKTWGTVFRELNKLYPTHACREYLKNLPLLSKYCGYREDNIPQLEDVSNFLKER 121
Query: 436 TGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADP 495
TGFS+RPVAG LS RDFL+GLAFRVFH TQY+RH S P YTPEPD CHELLGHVPL A+P
Sbjct: 122 TGFSIRPVAGYLSPRDFLSGLAFRVFHCTQYVRHSSDPFYTPEPDTCHELLGHVPLLAEP 181
Query: 496 SFAQFSQEIGLASLGAPDEYVERLAT 521
SFAQFSQEIGLASLGA +E V++LAT
Sbjct: 182 SFAQFSQEIGLASLGASEEAVQKLAT 207
Score = 154 bits (391), Expect = 5e-43
Identities = 79/112 (70%), Positives = 92/112 (82%)
Query: 1 GEPLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDI 60
G+P+P+V++T EE KTWG VFR L KLYPTHAC+E+ PLL + CGY EDNIPQLED+
Sbjct: 55 GDPIPKVEFTEEEIKTWGTVFRELNKLYPTHACREYLKNLPLLSKYCGYREDNIPQLEDV 114
Query: 61 SKFLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPD 112
S FLK+ TGFS+RPVAG LS RDFL+GLAFRVFH TQY+RH S P YTPEPD
Sbjct: 115 SNFLKERTGFSIRPVAGYLSPRDFLSGLAFRVFHCTQYVRHSSDPFYTPEPD 166
Score = 112 bits (281), Expect = 5e-28
Identities = 80/172 (46%), Positives = 98/172 (56%), Gaps = 23/172 (13%)
Query: 450 RDFLAGLAFRVFHSTQ--YIRHPSKPLYTPEP-----DVCHELLGHVPLFADPSFAQFSQ 502
R + A LA H + +T E V EL P A + + +
Sbjct: 42 RKYFADLAMNYKHGDPIPKVE------FTEEEIKTWGTVFRELNKLYPTHACREYLK-NL 94
Query: 503 EIGLASLGAPDEYVERLATSNNFMIVPRLASLSPDSTGFSLRPVAGLLSSRDFLAGLAFR 562
+ G ++ + +L +NF+ + TGFS+RPVAG LS RDFL+GLAFR
Sbjct: 95 PLLSKYCGYREDNIPQLEDVSNFLK---------ERTGFSIRPVAGYLSPRDFLSGLAFR 145
Query: 563 VFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGA 614
VFH TQY+RH S P YTPEPD CHELLGHVPL A+PSFAQFSQEIGLASLGA
Sbjct: 146 VFHCTQYVRHSSDPFYTPEPDTCHELLGHVPLLAEPSFAQFSQEIGLASLGA 197
Score = 92.2 bits (229), Expect = 3e-21
Identities = 35/46 (76%), Positives = 38/46 (82%)
Query: 164 IRELDRFANQILSYGSELDADHPGFTDPVYRARRKYFADLAFNYKH 209
I +LD AN++L YGSELDADHPGF D VYR RRKYFADLA NYKH
Sbjct: 9 ISDLDHCANRVLMYGSELDADHPGFKDNVYRKRRKYFADLAMNYKH 54
>d1ltza_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH
{Chromobacterium violaceum [TaxId: 536]}
Length = 277
Score = 140 bits (354), Expect = 4e-38
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 3 PLPRVDYTAEETKTWGEVFRNLTKLYPTHACKEHNHVFPLLIQNCGYAEDNIPQLEDISK 62
P P Y+AE+ TW +++ KL P AC E L D +P +++
Sbjct: 24 PQPLDRYSAEDHATWATLYQRQCKLLPGRACDEFLEGLERL----EVDADRVPDFNKLNE 79
Query: 63 FLKDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPD 112
L +TG+ + V GL+ F LA R F T ++R P + Y EPD
Sbjct: 80 KLMAATGWKIVAVPGLIPDDVFFEHLANRRFPVTWWLREPHQLDYLQEPD 129
Score = 139 bits (352), Expect = 9e-38
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 2/130 (1%)
Query: 394 YKHSILLMPEHNH-VFPLLIQNCGYAEDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRDF 452
Y+ L+P F ++ D +P +++ L +TG+ + V GL+ F
Sbjct: 42 YQRQCKLLPGRACDEFLEGLERLEVDADRVPDFNKLNEKLMAATGWKIVAVPGLIPDDVF 101
Query: 453 LAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFADPSFAQFSQEIGLASLGA- 511
LA R F T ++R P + Y EPDV H+L GHVPL +P FA + + G + A
Sbjct: 102 FEHLANRRFPVTWWLREPHQLDYLQEPDVFHDLFGHVPLLINPVFADYLEAYGKGGVKAK 161
Query: 512 PDEYVERLAT 521
+ LA
Sbjct: 162 ALGALPMLAR 171
Score = 113 bits (284), Expect = 1e-28
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 475 YTPEP-----DVCHELLGHVPLFADPSFAQFSQEIGLASLGAPDEYVERLATSNNFMIVP 529
Y+ E + +P A F + GL L + V N ++
Sbjct: 30 YSAEDHATWATLYQRQCKLLPGRACDEFLE-----GLERLEVDADRVPDFNKLNEKLM-- 82
Query: 530 RLASLSPDSTGFSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELL 589
+TG+ + V GL+ F LA R F T ++R P + Y EPDV H+L
Sbjct: 83 -------AATGWKIVAVPGLIPDDVFFEHLANRRFPVTWWLREPHQLDYLQEPDVFHDLF 135
Query: 590 GHVPLFADPSFAQFSQEIGLASLGA 614
GHVPL +P FA + + G + A
Sbjct: 136 GHVPLLINPVFADYLEAYGKGGVKA 160
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 97
Score = 67.2 bits (164), Expect = 2e-14
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 264 VIFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMV--ECAPGGDLSSVI 321
+IFS ++EVGALAK L+LF+++++NL HIESR S ++ YEF + L S+I
Sbjct: 19 LIFS-LKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSII 77
Query: 322 ESLRSSCSY-INIISRNH 338
+SLR+ ++ +SR+
Sbjct: 78 KSLRNDIGATVHELSRDK 95
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal
domain {Staphylococcus aureus [TaxId: 1280]}
Length = 80
Score = 57.4 bits (139), Expect = 4e-11
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 263 FVIFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVEC--APGGDLSSV 320
F+I H D+ G LA L F N+NL IESR Y F V+ A D+ V
Sbjct: 4 FLITPMH-DKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKV 62
Query: 321 IESLRSSCSYINII 334
I L + + +I
Sbjct: 63 IAILETLDFKVEMI 76
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal
domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 77
Score = 42.4 bits (100), Expect = 5e-06
Identities = 8/57 (14%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 271 DEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAP-GGDLSSVIESLRS 326
+++G L + + N+ ++ E+ + ++ GGD ++E +++
Sbjct: 10 NKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKT 66
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit
{Methylococcus capsulatus [TaxId: 414]}
Length = 384
Score = 37.5 bits (87), Expect = 0.004
Identities = 20/154 (12%), Positives = 34/154 (22%), Gaps = 13/154 (8%)
Query: 134 YGL-TVFASVGCPVGVAKAYGLGADYVVDHTIRELD--RFANQILSYGSELDADHPGFTD 190
YGL + L V D A I L PGF +
Sbjct: 152 YGLFNAHSQGA-------REALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDE 204
Query: 191 PVYRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
+ ++ + + F + F + F + +
Sbjct: 205 STAVPKAEWTNGEVY---KSARLAVEGLWQEVFDWNESAFSVHAVYDALFGQFVRREFFQ 261
Query: 251 QSCHSCPFSLFDFVIFSNHQDEVGALAKTLKLFK 284
+ +L F I A L+
Sbjct: 262 RLAPRFGDNLTPFFINQAQTYFQIAKQGVQDLYY 295
Score = 27.5 bits (61), Expect = 5.4
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 356 RFANQILSYGSELDADHPGFTDPVYRARRKYFADLAF 392
A I L PGF + + ++ +
Sbjct: 183 DIAQMIQLERGFLAKIVPGFDESTAVPKAEWTNGEVY 219
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 34.9 bits (78), Expect = 0.024
Identities = 23/171 (13%), Positives = 41/171 (23%), Gaps = 14/171 (8%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPF 258
L Y F L +
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243
Query: 259 SLFDFVIFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAPGGDLS 318
+L + + GA A K N+ L + R++ N +
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL------RLQYNE------IELDAVR 291
Query: 319 SVIESLRSSCSYINIISRNHNQFHGVPWFPRRIRELDRFANQILSYGSELD 369
++ + + + N N+F IRE+ F+ + ELD
Sbjct: 292 TLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV--FSTRGRGELDELD 340
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter,
permease protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 248
Score = 31.8 bits (71), Expect = 0.21
Identities = 9/43 (20%), Positives = 12/43 (27%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQS 252
F F F F F F F ++ +I S
Sbjct: 6 FSFLLLVLFLFIFLTLSNMIFEQITEDFSGLVKAAGNRSVISS 48
Score = 31.1 bits (69), Expect = 0.30
Identities = 6/41 (14%), Positives = 8/41 (19%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
F F F F F F + +
Sbjct: 5 VFSFLLLVLFLFIFLTLSNMIFEQITEDFSGLVKAAGNRSV 45
>d1g5za_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme
disease spirochete (Borrelia burgdorferi), different
strains [TaxId: 139]}
Length = 164
Score = 30.8 bits (70), Expect = 0.25
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 55 PQLEDISKFLKDSTGFSL--RPVAGLLSSRDFLAGLA 89
P L +ISK + +S L + V LL+S D LA A
Sbjct: 1 PNLTEISKKITESNAVVLAVKEVETLLASIDELATKA 37
Score = 30.8 bits (70), Expect = 0.25
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 423 PQLEDISKFLKDSTGFSL--RPVAGLLSSRDFLAGLA 457
P L +ISK + +S L + V LL+S D LA A
Sbjct: 1 PNLTEISKKITESNAVVLAVKEVETLLASIDELATKA 37
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC
{Escherichia coli [TaxId: 562]}
Length = 129
Score = 30.3 bits (68), Expect = 0.25
Identities = 4/40 (10%), Positives = 8/40 (20%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFY 238
+ + F FF F + +
Sbjct: 47 LLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVV 86
Score = 29.5 bits (66), Expect = 0.55
Identities = 4/41 (9%), Positives = 9/41 (21%)
Query: 199 YFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYF 239
+ + + F FF F + +
Sbjct: 46 WLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVV 86
Score = 29.1 bits (65), Expect = 0.79
Identities = 4/32 (12%), Positives = 7/32 (21%)
Query: 209 HFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFF 240
F FF F + ++
Sbjct: 55 PEGFEQASAIMGSFFVKFIMWGILTALAYHVV 86
Score = 28.0 bits (62), Expect = 1.8
Identities = 6/39 (15%), Positives = 8/39 (20%)
Query: 203 LAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFY 241
L + F FF F + Y
Sbjct: 48 LGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVV 86
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase,
regulatory (C-terminal) domain {Escherichia coli [TaxId:
562]}
Length = 84
Score = 28.9 bits (65), Expect = 0.35
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 265 IFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAPGGDLSSVIESL 324
+ H++ G L K+F + VN+ T + Y + A ++++
Sbjct: 14 LMHIHENRPGVLTALNKIFAEQGVNI--AAQYLQTSAQMGYVVIDIEADEDVAEKALQAM 71
Query: 325 RS 326
++
Sbjct: 72 KA 73
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 70
Score = 28.5 bits (64), Expect = 0.38
Identities = 5/26 (19%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 270 QDEVGALAKTLKLFKKHNVNLLHIES 295
+++ G L + ++ K N+N + +
Sbjct: 11 ENKSGRLTEVTEVLAKENIN---LSA 33
>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase
{Acinetobacter calcoaceticus [TaxId: 471]}
Length = 194
Score = 30.7 bits (68), Expect = 0.43
Identities = 8/33 (24%), Positives = 9/33 (27%)
Query: 111 PDTLFIIGANRGNGLAAIQVGKAYGLTVFASVG 143
D L A AAI K L +
Sbjct: 162 FDQLVKFYAFDEINQAAIDSRKGITLKPIIKIA 194
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit,
N-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 261
Score = 30.9 bits (70), Expect = 0.46
Identities = 6/31 (19%), Positives = 8/31 (25%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFF 240
+F F F F F F+
Sbjct: 221 MHSYFIFKDLVTVFLFMLILALFVFYSPNTL 251
Score = 30.5 bits (69), Expect = 0.51
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFF 231
F +K F F F F+
Sbjct: 225 FIFKDLVTVFLFMLILALFVFYSPNTL 251
Score = 30.1 bits (68), Expect = 0.64
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 215 FFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQP 248
+F F + F F F+ L P
Sbjct: 221 MHSYFIFKDLVTVFLFMLILALFVFYSPNTLGHP 254
Score = 29.7 bits (67), Expect = 1.1
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 213 FFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
+F F F + F FY L
Sbjct: 221 MHSYFIFKDLVTVFLFMLILALFVFYSPNTL 251
Score = 29.0 bits (65), Expect = 1.8
Identities = 6/31 (19%), Positives = 8/31 (25%)
Query: 212 FFFFFFFFFFFFFFFFYFFFFFFFFFYFFYF 242
+F F F F F F+
Sbjct: 221 MHSYFIFKDLVTVFLFMLILALFVFYSPNTL 251
Score = 28.2 bits (63), Expect = 3.2
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
+F F F F F ++ L
Sbjct: 221 MHSYFIFKDLVTVFLFMLILALFVFYSPNTL 251
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 412
Score = 30.9 bits (69), Expect = 0.55
Identities = 23/177 (12%), Positives = 42/177 (23%), Gaps = 37/177 (20%)
Query: 341 FHGVPWFPRRIRELDRFANQILSYGSE---------------------LDA--DHPGFTD 377
F V W + R+ F ++ G + LD
Sbjct: 37 FDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEALKWILDRKITADSVGL 96
Query: 378 PVYRARRKYFADLAFNYKHSILLMPEHNHVFPLLIQNCGYAEDNIPQLEDISKFLKDSTG 437
+ R + L L+ P + + + +
Sbjct: 97 GLTSELRSWLESLEPRKLAEYLIGGVAADDLPA---------SEGANILKMYREYLGHSS 147
Query: 438 FSLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFAD 494
F L P+ +RD + V + P E + + P FA+
Sbjct: 148 FLLPPLPNTQFTRDTTCWIYGGVT-----LNPMYWPARRQETLLTTAIYKFHPEFAN 199
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase,
regulatory (C-terminal) domain {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 78
Score = 28.3 bits (63), Expect = 0.55
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 265 IFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAPGGDLSSVIESL 324
+ ++ D GAL K L VN+ + + V ++
Sbjct: 6 LIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLR--LDQDVPDDVRTAI 63
Query: 325 RS 326
+
Sbjct: 64 AA 65
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 71
Score = 28.1 bits (63), Expect = 0.56
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 271 DEVGALAKTLKLFKKHNVNLLHI 293
+ GALAK L V + ++
Sbjct: 8 NVPGALAKVLGFLSAEGVFIEYM 30
>d1f1ma_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme
disease spirochete (Borrelia burgdorferi), different
strains [TaxId: 139]}
Length = 162
Score = 29.6 bits (67), Expect = 0.65
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 55 PQLEDISKFLKDSTGF--SLRPVAGLLSSRDFLA 86
P L +ISK + +S +++ V LL+S D LA
Sbjct: 1 PNLTEISKKITESNAVVLAVKEVETLLTSIDELA 34
Score = 29.6 bits (67), Expect = 0.65
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 423 PQLEDISKFLKDSTGF--SLRPVAGLLSSRDFLA 454
P L +ISK + +S +++ V LL+S D LA
Sbjct: 1 PNLTEISKKITESNAVVLAVKEVETLLTSIDELA 34
>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic
domain {Escherichia coli [TaxId: 562]}
Length = 249
Score = 29.9 bits (66), Expect = 0.73
Identities = 7/38 (18%), Positives = 7/38 (18%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQP 248
F FF F F F Q
Sbjct: 34 RNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQ 71
Score = 29.2 bits (64), Expect = 1.4
Identities = 8/47 (17%), Positives = 9/47 (19%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSC 256
F FF F F F Q + S
Sbjct: 34 RNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSG 80
Score = 28.0 bits (61), Expect = 3.4
Identities = 6/31 (19%), Positives = 6/31 (19%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFF 240
F FF F F F
Sbjct: 32 MPRNFQQFFGDDSPFCQEGSPFQSSPFCQGG 62
>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit
{Methylosinus trichosporium [TaxId: 426]}
Length = 383
Score = 30.2 bits (68), Expect = 0.77
Identities = 26/168 (15%), Positives = 39/168 (23%), Gaps = 17/168 (10%)
Query: 134 YGL-TVFASVGCPVGVAKAYGLGADYVVDHTIRELD--RFANQILSYGSELDADHPGFTD 190
YGL +SVG L LD A I + PGF
Sbjct: 150 YGLFNAHSSVG-------RDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDA 202
Query: 191 PVYRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
++ + D ++ + + + + F F Q L
Sbjct: 203 STDVPKKIWTTDPIYSGARATVQEIWQGVQDWNEILWAGHAVYDATFGQFARREFFQRLA 262
Query: 251 QSCHSCPFSLFDFVI---FSNHQDEVGALAKTL----KLFKKHNVNLL 291
F F + + L F HN L
Sbjct: 263 TVYGDTLTPFFTAQSQTYFQTTRGAIDDLFVYCLANDSEFGAHNRTFL 310
Score = 27.5 bits (61), Expect = 6.2
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 12/47 (25%)
Query: 356 RFANQILSYGSELDADHPGF------------TDPVYRARRKYFADL 390
A I + PGF TDP+Y R ++
Sbjct: 181 DNAQMIQMERLFIAKLVPGFDASTDVPKKIWTTDPIYSGARATVQEI 227
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit,
N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 246
Score = 29.3 bits (66), Expect = 1.1
Identities = 2/27 (7%), Positives = 3/27 (11%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFF 231
+ K F
Sbjct: 210 YTIKDILGALLLILALMLLVLFAPDLL 236
Score = 28.5 bits (64), Expect = 2.5
Identities = 5/34 (14%), Positives = 7/34 (20%)
Query: 215 FFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQP 248
F ++ F LL P
Sbjct: 206 FHPYYTIKDILGALLLILALMLLVLFAPDLLGDP 239
Score = 28.1 bits (63), Expect = 3.3
Identities = 2/31 (6%), Positives = 4/31 (12%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFF 240
F ++ F
Sbjct: 206 FHPYYTIKDILGALLLILALMLLVLFAPDLL 236
Score = 27.0 bits (60), Expect = 7.1
Identities = 2/31 (6%), Positives = 5/31 (16%)
Query: 213 FFFFFFFFFFFFFFFYFFFFFFFFFYFFYFL 243
F ++ + L
Sbjct: 206 FHPYYTIKDILGALLLILALMLLVLFAPDLL 236
>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human
(Homo sapiens) [TaxId: 9606]}
Length = 356
Score = 29.5 bits (65), Expect = 1.3
Identities = 13/142 (9%), Positives = 31/142 (21%)
Query: 126 AAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRELDRFANQILSYGSELDADH 185
+Q + + L + V +A G+ V + +
Sbjct: 58 LTLQPLRRFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVV 117
Query: 186 PGFTDPVYRARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLL 245
V++A LA F + + + +
Sbjct: 118 ASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQA 177
Query: 246 SQPLIQSCHSCPFSLFDFVIFS 267
S L++ + +
Sbjct: 178 SHQLLRILTDALVPYLVGQVVA 199
>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini
[TaxId: 2094]}
Length = 409
Score = 29.7 bits (66), Expect = 1.3
Identities = 18/163 (11%), Positives = 42/163 (25%), Gaps = 17/163 (10%)
Query: 341 FHGVPWFPRRIRELDRFANQILSYGSE------LDADHPGFTDPVYRARRKYFADLAFNY 394
F + +E +F ++ + L A+ + +
Sbjct: 44 FSAILESHDARKEHKQFVAELKANDINVVELIDLVAETYDLASQ---EAKDKLIEEFLED 100
Query: 395 KHSILLMPEHNHVFPLLIQ---NCGYAEDNIPQLEDISKFLKDSTGFSLRPVAGLLSSRD 451
+L V L + E + + ++ + P+ L +RD
Sbjct: 101 SEPVLSEEHKVVVRNFLKAKKTSRELVEIMMAGITKYDLGIEADHELIVDPMPNLYFTRD 160
Query: 452 FLAGLAFRVFHSTQYIRHPSKPLYTPEPDVCHELLGHVPLFAD 494
A + V I + + E + + P +
Sbjct: 161 PFASVGNGVT-----IHYMRYKVRQRETLFSRFVFSNHPKLIN 198
>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia
coli [TaxId: 562]}
Length = 77
Score = 26.8 bits (59), Expect = 2.1
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 113 TLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGA 156
+ + GA+ G G A+ + G V A G LGA
Sbjct: 34 EIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGA 77
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex
{Chlamydomonas reinhardtii [TaxId: 3055]}
Length = 156
Score = 27.8 bits (62), Expect = 2.5
Identities = 6/57 (10%), Positives = 14/57 (24%)
Query: 210 FFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFVIF 266
+F+ F + S Q+ + P + F++
Sbjct: 77 YFYPVFQILRVVPNKLLGVLLMAAVPAGLITVPFIESINKFQNPYRRPIATILFLLG 133
Score = 27.1 bits (60), Expect = 4.8
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 6/52 (11%)
Query: 186 PGFTDPVYRAR------RKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFF 231
P +DPV +A+ + + A+ + F F
Sbjct: 4 PDLSDPVLKAKLAKGMGHNTYGEPAWPNDLLYMFPVVILGTFACVIGLSVLD 55
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 27.3 bits (60), Expect = 3.3
Identities = 9/71 (12%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 107 YTPEPDTLFIIGANRGNGLAAIQVGKAYGLTVFASVGCPVGVAKAYGLGADYVVDHTIRE 166
P+ + + +++G+ F + G V K +G + V + +
Sbjct: 71 VLPDNVPIMSVEVLATTCWGKY-AHQSFGIDRFGASGKAPEVFKFFGFTPEGVAERAQKT 129
Query: 167 LDRF-ANQILS 176
+ + ++++S
Sbjct: 130 IAFYKGDKLIS 140
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 27.8 bits (60), Expect = 4.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFF 235
+F+ F FFFF+FF ++ FF +
Sbjct: 4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWL 34
Score = 27.4 bits (59), Expect = 5.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 214 FFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLI 250
F+ F FFFF+FF +F FF + +S+
Sbjct: 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT 45
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 26.5 bits (58), Expect = 4.8
Identities = 5/51 (9%), Positives = 12/51 (23%), Gaps = 3/51 (5%)
Query: 194 RARRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLL 244
+R + D Y + F + F + ++
Sbjct: 6 LEKRGWLDDH---YHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVI 53
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 27.1 bits (58), Expect = 6.6
Identities = 15/164 (9%), Positives = 38/164 (23%), Gaps = 5/164 (3%)
Query: 205 FNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFV 264
F + L + L S
Sbjct: 175 KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN 234
Query: 265 IFSNHQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAPGG----DLSS- 319
++ + +L + + +N + P ++S+
Sbjct: 235 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN 294
Query: 320 VIESLRSSCSYINIISRNHNQFHGVPWFPRRIRELDRFANQILS 363
+ L + + + + N VP P+ +++L N +
Sbjct: 295 KLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLRE 338
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
subunit I {Thermus thermophilus [TaxId: 274]}
Length = 549
Score = 27.3 bits (60), Expect = 7.7
Identities = 9/46 (19%), Positives = 11/46 (23%)
Query: 196 RRKYFADLAFNYKHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFY 241
RR Y A + Y H F F + F
Sbjct: 436 RRAYIAQVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGLFSVLLS 481
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 26.9 bits (58), Expect = 9.6
Identities = 4/49 (8%), Positives = 10/49 (20%)
Query: 208 KHFFFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSC 256
+ F + + F+ F F + +
Sbjct: 252 RMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 300
>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 202
Score = 26.3 bits (57), Expect = 9.8
Identities = 16/191 (8%), Positives = 37/191 (19%), Gaps = 26/191 (13%)
Query: 211 FFFFFFFFFFFFFFFFFYFFFFFFFFFYFFYFLLLSQPLIQSCHSCPFSLFDFV--IFSN 268
+ F F ++ +
Sbjct: 25 LLILPYQEEAFVEAHGGPLFRVAQTIHSMSKRGVVRGIHYTVTPPGTAKYVYCARGKAMD 84
Query: 269 HQDEVGALAKTLKLFKKHNVNLLHIESRSSTRIENNYEFMVECAPGGDLSSVIESLRSSC 328
++ + T + ++ V G + V +
Sbjct: 85 IVIDIRVGSPTFGQWDSVLMD-------------QQDPRAVYLPVGVGHAFVALEDDTVM 131
Query: 329 SYINIISRNHNQFHGVPWFPRRIR-ELDRFANQILSYGSELDADHPGFTD-------PVY 380
SY+ S + + +D I+ S+ D + P Y
Sbjct: 132 SYMLSRSYVTQDELALSALDPALGLPIDIGVEPIV---SDRDRVAITLAEAQRQGLLPDY 188
Query: 381 RARRKYFADLA 391
++ L
Sbjct: 189 TTSQEIERRLT 199
>d2incb1 a.25.1.2 (B:8-329) Toluene, o-xylene monooxygenase
oxygenase subunit TouE {Pseudomonas stutzeri [TaxId:
316]}
Length = 322
Score = 26.7 bits (59), Expect = 9.9
Identities = 10/77 (12%), Positives = 17/77 (22%), Gaps = 13/77 (16%)
Query: 151 AYGLGADYVVDHTIRELD--RFANQILSYGSELDADHPGF-----------TDPVYRARR 197
+ T D R+ EL +P DP ++ R
Sbjct: 137 QIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRERDVWENDPAWQGFR 196
Query: 198 KYFADLAFNYKHFFFFF 214
+ + F
Sbjct: 197 ELIEKALIAWDWGEAFT 213
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.143 0.452
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,581,210
Number of extensions: 128561
Number of successful extensions: 1267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1000
Number of HSP's successfully gapped: 116
Length of query: 655
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 564
Effective length of database: 1,158,166
Effective search space: 653205624
Effective search space used: 653205624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.1 bits)