BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14591
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BNX|A Chain A, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
pdb|2BNX|B Chain B, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
Length = 386
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 118 HVCILCLRAIMNNKYGLNMVIKHTEAI 144
H I CL+A MNNK+G+ +++ E I
Sbjct: 76 HEIIRCLKAFMNNKFGIKTMLETEEGI 102
>pdb|3EG5|B Chain B, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|D Chain D, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 383
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 118 HVCILCLRAIMNNKYGLNMVIKHTEAI 144
H I CL+A MNNK+G+ +++ E I
Sbjct: 138 HEIIRCLKAFMNNKFGIKTMLETEEGI 164
>pdb|1Z2C|B Chain B, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|D Chain D, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 383
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 118 HVCILCLRAIMNNKYGLNMVIKHTEAI 144
H I CL+A MNNK+G+ +++ E I
Sbjct: 138 HEIIRCLKAFMNNKFGIKTMLETEEGI 164
>pdb|3O4X|A Chain A, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|B Chain B, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|C Chain C, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|D Chain D, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 330
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 118 HVCILCLRAIMNNKYGLNMVIKHTEAI 144
H I CL+A MNNK+G+ +++ E I
Sbjct: 78 HEIIRCLKAFMNNKFGIKTMLETEEGI 104
>pdb|2F31|A Chain A, Crystal Structure Of The Autoinhibitory Switch In Formin
Mdia1; The DidDAD COMPLEX
Length = 233
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 118 HVCILCLRAIMNNKYGLNMVIKHTEAI 144
H I CL+A MNNK+G+ +++ E I
Sbjct: 72 HEIIRCLKAFMNNKFGIKTMLETEEGI 98
>pdb|3OBV|A Chain A, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|B Chain B, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|C Chain C, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|D Chain D, Autoinhibited Formin Mdia1 Structure
Length = 327
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 118 HVCILCLRAIMNNKYGLNMVIKHTEAI 144
H I CL+A MNNK+G+ +++ E I
Sbjct: 76 HEIIRCLKAFMNNKFGIKTMLETEEGI 102
>pdb|2BAP|B Chain B, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
pdb|2BAP|A Chain A, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
Length = 317
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 118 HVCILCLRAIMNNKYGLNMVIKHTEAI 144
H I CL+A MNNK+G+ +++ E I
Sbjct: 72 HEIIRCLKAFMNNKFGIKTMLETEEGI 98
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 84 GHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRA------IMNNKYGLNMV 137
GHQ+ L+ +P++ A+ DD +C+ + A +++ K N+
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSAS--------DDHTICLWDINATPKEHRVIDAK---NIF 231
Query: 138 IKHTEAINSIALSLMHKSLRATLFD 162
HT + +A L+H+SL ++ D
Sbjct: 232 TGHTAVVEDVAWHLLHESLFGSVAD 256
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 84 GHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRA------IMNNKYGLNMV 137
GHQ+ L+ +P++ A+ DD +C+ + A +++ K N+
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSAS--------DDHTICLWDINATPKEHRVIDAK---NIF 229
Query: 138 IKHTEAINSIALSLMHKSLRATLFD 162
HT + +A L+H+SL ++ D
Sbjct: 230 TGHTAVVEDVAWHLLHESLFGSVAD 254
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 84 GHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRA------IMNNKYGLNMV 137
GHQ+ L+ +P++ A+ DD +C+ + A +++ K N+
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSAS--------DDHTICLWDINATPKEHRVIDAK---NIF 227
Query: 138 IKHTEAINSIALSLMHKSLRATLFD 162
HT + +A L+H+SL ++ D
Sbjct: 228 TGHTAVVEDVAWHLLHESLFGSVAD 252
>pdb|3TJ4|A Chain A, Crystal Structure Of An Enolase From Agrobacterium
Tumefaciens (Efi Target Efi-502087) No Mg
pdb|3TJ4|B Chain B, Crystal Structure Of An Enolase From Agrobacterium
Tumefaciens (Efi Target Efi-502087) No Mg
pdb|4H19|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|C Chain C, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|D Chain D, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|E Chain E, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|F Chain F, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|G Chain G, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|H Chain H, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|I Chain I, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|K Chain K, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|L Chain L, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|M Chain M, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|N Chain N, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|P Chain P, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|J Chain J, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|O Chain O, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
Length = 372
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 83 LGHQRPSLDLASSPSVKKRSRHAARLNM-GDPKDDIHVC 120
+GH P++D+A +V++R A R+ + G+ K D+ C
Sbjct: 175 VGHDDPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTC 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,290,235
Number of Sequences: 62578
Number of extensions: 92919
Number of successful extensions: 150
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 11
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)