Query psy14591
Match_columns 164
No_of_seqs 123 out of 150
Neff 2.6
Searched_HMMs 46136
Date Fri Aug 16 23:50:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06371 Drf_GBD: Diaphanous G 99.4 8.7E-14 1.9E-18 104.9 2.5 53 111-163 127-179 (187)
2 KOG1924|consensus 98.6 7E-09 1.5E-13 101.1 0.3 51 113-163 205-255 (1102)
3 PF11081 DUF2890: Protein of u 71.7 10 0.00022 32.1 5.3 22 116-137 124-145 (187)
4 PF09026 CENP-B_dimeris: Centr 56.2 3.7 8.1E-05 32.0 0.0 14 83-96 46-59 (101)
5 PF09026 CENP-B_dimeris: Centr 52.1 4.8 0.0001 31.4 0.0 6 63-68 37-42 (101)
6 KOG1572|consensus 49.7 6.1 0.00013 34.8 0.3 59 72-141 126-184 (249)
7 KOG2963|consensus 46.2 39 0.00084 31.7 4.8 10 43-52 366-375 (405)
8 KOG0329|consensus 36.7 11 0.00025 34.5 -0.0 51 69-122 23-74 (387)
9 PF06375 BLVR: Bovine leukaemi 30.2 17 0.00037 29.7 0.0 22 24-45 79-100 (154)
10 PF08389 Xpo1: Exportin 1-like 28.8 1.2E+02 0.0026 21.4 4.2 42 114-157 100-141 (148)
11 KOG1999|consensus 25.4 21 0.00046 36.9 -0.3 34 31-64 57-90 (1024)
12 PF10621 FpoO: F420H2 dehydrog 24.9 58 0.0013 26.1 2.1 23 105-127 79-101 (119)
13 PF14812 PBP1_TM: Transmembran 24.7 25 0.00053 26.3 0.0 7 62-68 48-54 (81)
14 cd00020 ARM Armadillo/beta-cat 23.9 54 0.0012 21.8 1.6 46 115-161 22-68 (120)
15 KOG2963|consensus 23.3 1.8E+02 0.004 27.4 5.3 24 34-57 360-383 (405)
16 PF10508 Proteasom_PSMB: Prote 22.6 61 0.0013 29.7 2.1 47 114-163 52-98 (503)
17 TIGR00927 2A1904 K+-dependent 22.1 41 0.00088 35.2 0.9 27 39-65 853-879 (1096)
18 PRK04019 rplP0 acidic ribosoma 21.3 30 0.00065 30.3 -0.1 21 47-67 302-322 (330)
19 TIGR02571 ComEB ComE operon pr 21.0 22 0.00047 28.2 -1.0 17 120-138 97-113 (151)
20 cd00786 cytidine_deaminase-lik 20.8 28 0.0006 24.7 -0.4 16 120-137 76-91 (96)
No 1
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=99.41 E-value=8.7e-14 Score=104.90 Aligned_cols=53 Identities=38% Similarity=0.689 Sum_probs=47.8
Q ss_pred CCCCcchHHHHHHHHHHhccHHhHHHHhcchhHHHHHHHHhcCCCcceeeccc
Q psy14591 111 GDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRATLFDF 163 (164)
Q Consensus 111 ~s~kd~qHeCIrCLKAIMNNKyGl~~VLsH~eaIn~IAlSLds~NprTKaLVL 163 (164)
..+.+.+|+|++|||||||+++|+..|+.|+.+|..|+.||++++++||.+|+
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999885
No 2
>KOG1924|consensus
Probab=98.62 E-value=7e-09 Score=101.12 Aligned_cols=51 Identities=25% Similarity=0.389 Sum_probs=47.7
Q ss_pred CCcchHHHHHHHHHHhccHHhHHHHhcchhHHHHHHHHhcCCCcceeeccc
Q psy14591 113 PKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRATLFDF 163 (164)
Q Consensus 113 ~kd~qHeCIrCLKAIMNNKyGl~~VLsH~eaIn~IAlSLds~NprTKaLVL 163 (164)
..+.+|++|+||||||||+||+..||...+++.++|++||+..|.+++-|+
T Consensus 205 ~~k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvv 255 (1102)
T KOG1924|consen 205 DIKNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPREPNMMTDVV 255 (1102)
T ss_pred HHHHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCccCccHHHHHH
Confidence 788999999999999999999999999999999999999999999887553
No 3
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=71.65 E-value=10 Score=32.07 Aligned_cols=22 Identities=18% Similarity=0.024 Sum_probs=14.7
Q ss_pred chHHHHHHHHHHhccHHhHHHH
Q psy14591 116 DIHVCILCLRAIMNNKYGLNMV 137 (164)
Q Consensus 116 ~qHeCIrCLKAIMNNKyGl~~V 137 (164)
.-+.|+-||-||.-..-|-...
T Consensus 124 lR~~I~~tLyaifqqsrG~~~~ 145 (187)
T PF11081_consen 124 LRNRIFPTLYAIFQQSRGNEQE 145 (187)
T ss_pred HHHHHHHHHHHHHHHhcCCccc
Confidence 3355999999997665554333
No 4
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=56.18 E-value=3.7 Score=31.95 Aligned_cols=14 Identities=7% Similarity=0.173 Sum_probs=6.0
Q ss_pred cCCCCCcccccccc
Q psy14591 83 LGHQRPSLDLASSP 96 (164)
Q Consensus 83 ~~~~~~~~d~~lt~ 96 (164)
++.+...++.+.+|
T Consensus 46 fgea~~~~~~v~rY 59 (101)
T PF09026_consen 46 FGEAMAYFTMVKRY 59 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhhcchHhhh
Confidence 44444444444333
No 5
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=52.09 E-value=4.8 Score=31.38 Aligned_cols=6 Identities=50% Similarity=1.027 Sum_probs=0.0
Q ss_pred HhhCCC
Q psy14591 63 EEEGLP 68 (164)
Q Consensus 63 ~~~~~~ 68 (164)
+++++|
T Consensus 37 e~de~p 42 (101)
T PF09026_consen 37 EEDEVP 42 (101)
T ss_dssp ------
T ss_pred cccccc
Confidence 334444
No 6
>KOG1572|consensus
Probab=49.73 E-value=6.1 Score=34.81 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=40.6
Q ss_pred CCCCcccCCCCcCCCCCccccccccccccccccccccccCCCCcchHHHHHHHHHHhccHHhHHHHhcch
Q psy14591 72 NPPANVISPQSLGHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHT 141 (164)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~d~~lt~~l~~rrr~i~k~~~~s~kd~qHeCIrCLKAIMNNKyGl~~VLsH~ 141 (164)
+|+.|...-....++.--||..--|.|+++++. +-+.-..|.|||.||| |-+..||+..
T Consensus 126 ~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rG---------khRtg~lVgclRklq~--W~lssil~Ey 184 (249)
T KOG1572|consen 126 EPFVNIPDHSIRKALKVLLDKRNYPILIHCKRG---------KHRTGCLVGCLRKLQN--WSLSSILDEY 184 (249)
T ss_pred CCCCCChHHHHHHHHHHHhcccCCceEEecCCC---------CcchhhhHHHHHHHhc--cchhHHHHHH
Confidence 777766655555566666676667777776653 2344568999999999 7777777653
No 7
>KOG2963|consensus
Probab=46.24 E-value=39 Score=31.75 Aligned_cols=10 Identities=50% Similarity=1.049 Sum_probs=4.0
Q ss_pred CcccccccCC
Q psy14591 43 GGERTEEEGG 52 (164)
Q Consensus 43 ~~~~~~~~~~ 52 (164)
||+..+.+|+
T Consensus 366 G~~~s~~~~~ 375 (405)
T KOG2963|consen 366 GGEGSEKDGD 375 (405)
T ss_pred cccccCcCCC
Confidence 3333344444
No 8
>KOG0329|consensus
Probab=36.72 E-value=11 Score=34.54 Aligned_cols=51 Identities=16% Similarity=0.269 Sum_probs=31.8
Q ss_pred CCCCCCCcccCCCCcCCCCCcc-ccccccccccccccccccccCCCCcchHHHHH
Q psy14591 69 ASTNPPANVISPQSLGHQRPSL-DLASSPSVKKRSRHAARLNMGDPKDDIHVCIL 122 (164)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~-d~~lt~~l~~rrr~i~k~~~~s~kd~qHeCIr 122 (164)
..++||++..--.-.+.-++.+ |.++.|-+. |++.-.-+.-....||+||-
T Consensus 23 ~~~~~~~~d~kgsyv~ihssgfrdfllkpell---raivdcgfehpsevqhecip 74 (387)
T KOG0329|consen 23 SAPAGPKKDKKGSYVSIHSSGFRDFLLKPELL---RAIVDCGFEHPSEVQHECIP 74 (387)
T ss_pred CCCCCccccccCcEEEEeccchhhhhcCHHHH---HHHHhccCCCchHhhhhhhh
Confidence 4556777655544444445555 776666665 45555566667788999884
No 9
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=30.18 E-value=17 Score=29.65 Aligned_cols=22 Identities=32% Similarity=0.515 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhhhcCCCCcc
Q psy14591 24 QRKKAEEKKKKKRRAEGRGGGE 45 (164)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~ 45 (164)
+.++...||+||....+..++.
T Consensus 79 ~~~~k~kKK~KKkkKkkKk~~k 100 (154)
T PF06375_consen 79 QKSKKKKKKKKKKKKKKKKSKK 100 (154)
T ss_dssp ----------------------
T ss_pred hhhhhhhhhccchhcccccCCC
Confidence 3333333443333333444444
No 10
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=28.81 E-value=1.2e+02 Score=21.44 Aligned_cols=42 Identities=19% Similarity=0.375 Sum_probs=31.4
Q ss_pred CcchHHHHHHHHHHhccHHhHHHHhcchhHHHHHHHHhcCCCcc
Q psy14591 114 KDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLR 157 (164)
Q Consensus 114 kd~qHeCIrCLKAIMNNKyGl~~VLsH~eaIn~IAlSLds~Npr 157 (164)
......++.|+++++. -.....+++++ -++.+...|.+++.+
T Consensus 100 ~~~~~~~L~~l~s~i~-~~~~~~i~~~~-~l~~~~~~l~~~~~~ 141 (148)
T PF08389_consen 100 EELVKAALKCLKSWIS-WIPIELIINSN-LLNLIFQLLQSPELR 141 (148)
T ss_dssp HHHHHHHHHHHHHHTT-TS-HHHHHSSS-HHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHHHHHHHH-hCCHHHhccHH-HHHHHHHHcCCHHHH
Confidence 4456679999999998 45777777755 889999988666653
No 11
>KOG1999|consensus
Probab=25.42 E-value=21 Score=36.87 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=19.1
Q ss_pred HHHhhhhhcCCCCcccccccCCchhhhhhHHHHh
Q psy14591 31 KKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEE 64 (164)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (164)
+|.||-+..|+-++++..+...+++++++|.|++
T Consensus 57 ~~~k~~s~~gf~~~e~dvDdeveddd~~~edEed 90 (1024)
T KOG1999|consen 57 EKDKKESGGGFIDREADVDDEVEDDDDDEEDEED 90 (1024)
T ss_pred hhccccccccccccccccccccccccchhccCcc
Confidence 3445566667777777655555555444444443
No 12
>PF10621 FpoO: F420H2 dehydrogenase subunit FpoO ; InterPro: IPR018288 This entry represents the FpoO subunit of membrane-bound multi-subunit F420H2 dehydrogenase, which oxidises the reduced coenzyme F420H2 to coenzyme F420 and feeds the electrons via an FeS cluster into an energy-conserving electron transport chain [, ]. This enzyme plays a role in the methanogenic pathway in methanogenic archaea. Reduced coenzyme F420H2 is the major cytoplasmic electron carrier of methanogens and a reversible hydride donor, much like NADH []. F420H2 + COB-S-S-CoM = F420 + CoM-SH + CoB-SH Where CoB-S-S-CoM (the heterosulphide of 2-mercaptoethanesulphonate and 7-mercaptoheptanoylthreonine phosphate) is the terminal electron acceptor of the methanogenic pathway, and is reduced with the concomitant generation of a transmembrane proton potential and ATP synthesis. The FpoO subunit of F420H2 dehydrogenase probably participates in the reduction of methanophenazine, where it acts as a special mechanism for the reduction of the methanogenic cofactor [].
Probab=24.95 E-value=58 Score=26.12 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=18.4
Q ss_pred ccccccCCCCcchHHHHHHHHHH
Q psy14591 105 AARLNMGDPKDDIHVCILCLRAI 127 (164)
Q Consensus 105 i~k~~~~s~kd~qHeCIrCLKAI 127 (164)
|+..+-++..++.|.|-+||.|.
T Consensus 79 IPsFskg~~~~~~~lC~~CLe~~ 101 (119)
T PF10621_consen 79 IPSFSKGSVKKDVHLCRRCLEAC 101 (119)
T ss_pred cCCcccccchhHHHHHHHHHHHH
Confidence 34456677889999999999995
No 13
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=24.71 E-value=25 Score=26.26 Aligned_cols=7 Identities=71% Similarity=1.104 Sum_probs=0.0
Q ss_pred HHhhCCC
Q psy14591 62 EEEEGLP 68 (164)
Q Consensus 62 ~~~~~~~ 68 (164)
|||+-.|
T Consensus 48 eeee~m~ 54 (81)
T PF14812_consen 48 EEEEPMP 54 (81)
T ss_dssp -------
T ss_pred hhccccc
Confidence 3444333
No 14
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=23.91 E-value=54 Score=21.76 Aligned_cols=46 Identities=7% Similarity=0.070 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHHhcc-HHhHHHHhcchhHHHHHHHHhcCCCcceeec
Q psy14591 115 DDIHVCILCLRAIMNN-KYGLNMVIKHTEAINSIALSLMHKSLRATLF 161 (164)
Q Consensus 115 d~qHeCIrCLKAIMNN-KyGl~~VLsH~eaIn~IAlSLds~NprTKaL 161 (164)
+....++.||..+.-+ ......++. ..++..|...|.+++++++..
T Consensus 22 ~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~ 68 (120)
T cd00020 22 NVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKA 68 (120)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHH
Confidence 4456688888887655 455666655 478899999999888776543
No 15
>KOG2963|consensus
Probab=23.34 E-value=1.8e+02 Score=27.44 Aligned_cols=24 Identities=42% Similarity=0.688 Sum_probs=17.2
Q ss_pred hhhhhcCCCCcccccccCCchhhh
Q psy14591 34 KKRRAEGRGGGERTEEEGGEEEEE 57 (164)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~ 57 (164)
.+++|+|..|.+...+.++|+.++
T Consensus 360 e~~a~eG~~~s~~~~~~~de~~~~ 383 (405)
T KOG2963|consen 360 EKRAAEGGEGSEKDGDMGDEDSSE 383 (405)
T ss_pred HHHHhhcccccCcCCCcccccchh
Confidence 345778887777777777777666
No 16
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=22.60 E-value=61 Score=29.67 Aligned_cols=47 Identities=9% Similarity=0.118 Sum_probs=37.3
Q ss_pred CcchHHHHHHHHHHhccHHhHHHHhcchhHHHHHHHHhcCCCcceeeccc
Q psy14591 114 KDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRATLFDF 163 (164)
Q Consensus 114 kd~qHeCIrCLKAIMNNKyGl~~VLsH~eaIn~IAlSLds~NprTKaLVL 163 (164)
.+..-.|+.||+-+|...++-.. -++....|...|.++++.+|.+++
T Consensus 52 ~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr~l~l 98 (503)
T PF10508_consen 52 REQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVRRLAL 98 (503)
T ss_pred hHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHHHHHH
Confidence 34455588999999998877766 455678899999999999998864
No 17
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=22.14 E-value=41 Score=35.16 Aligned_cols=27 Identities=63% Similarity=0.916 Sum_probs=0.0
Q ss_pred cCCCCcccccccCCchhhhhhHHHHhh
Q psy14591 39 EGRGGGERTEEEGGEEEEEEEEEEEEE 65 (164)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (164)
+|++||.--+.|..++++||||+|||+
T Consensus 853 ~~~~~~d~~dse~~~~~~~~~e~~~~e 879 (1096)
T TIGR00927 853 DGGGGSDGGDSEEEEEEEEEEEEEEEE 879 (1096)
T ss_pred cccCCCCcccccccccccchhhhcccc
No 18
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=21.31 E-value=30 Score=30.34 Aligned_cols=21 Identities=67% Similarity=0.757 Sum_probs=0.0
Q ss_pred ccccCCchhhhhhHHHHhhCC
Q psy14591 47 TEEEGGEEEEEEEEEEEEEGL 67 (164)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~ 67 (164)
.+++..++|||+++++||++.
T Consensus 302 ~~~~~~~~~ee~~~~~ee~~~ 322 (330)
T PRK04019 302 EEEEEEEEEEEEEEPSEEEAA 322 (330)
T ss_pred ccccchhhhhhhcccchhhhh
No 19
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=20.97 E-value=22 Score=28.16 Aligned_cols=17 Identities=24% Similarity=0.841 Sum_probs=14.4
Q ss_pred HHHHHHHHhccHHhHHHHh
Q psy14591 120 CILCLRAIMNNKYGLNMVI 138 (164)
Q Consensus 120 CIrCLKAIMNNKyGl~~VL 138 (164)
|.+|.+||.+ .|+..|.
T Consensus 97 C~~Ca~ai~~--agI~~Vv 113 (151)
T TIGR02571 97 CLQCTKSIIQ--AGIKKIY 113 (151)
T ss_pred cHHHHHHHHH--hCCCEEE
Confidence 9999999997 5777765
No 20
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=20.85 E-value=28 Score=24.73 Aligned_cols=16 Identities=31% Similarity=0.654 Sum_probs=12.2
Q ss_pred HHHHHHHHhccHHhHHHH
Q psy14591 120 CILCLRAIMNNKYGLNMV 137 (164)
Q Consensus 120 CIrCLKAIMNNKyGl~~V 137 (164)
|.+|..||... |+..|
T Consensus 76 C~mC~~ai~~~--gi~~V 91 (96)
T cd00786 76 CGACAQLIIEL--GIKDV 91 (96)
T ss_pred hHHHHHHHHHh--CCCCE
Confidence 99999999874 55443
Done!