RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14591
(164 letters)
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein
complex, armadillo repeats, structural protein; 2.10A
{Mus musculus}
Length = 233
Score = 52.5 bits (125), Expect = 5e-09
Identities = 12/59 (20%), Positives = 24/59 (40%)
Query: 100 KRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRA 158
+ + + H I CL+A MNNK+G+ +++ E I + ++
Sbjct: 54 RLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM 112
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO
proteins, formins, armadillo repeat, G-protein, GTPase,
alternative splicing; HET: GNP; 2.70A {Mus musculus}
PDB: 1z2c_B*
Length = 383
Score = 46.8 bits (110), Expect = 6e-07
Identities = 12/58 (20%), Positives = 24/58 (41%)
Query: 100 KRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLR 157
+ + + H I CL+A MNNK+G+ +++ E I + ++
Sbjct: 120 RLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPN 177
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 44.1 bits (103), Expect = 6e-06
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 99 KKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLR 157
K+ + + H I CL+A MNNK+G+ +++ E I + ++
Sbjct: 57 KRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPN 115
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 3e-04
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 18/68 (26%)
Query: 13 RKLKEEEEVKGQRKKAEEKKKK---------------KRRAEGRGGGERTEEEGGEEEEE 57
RK +EE+ + Q A K + +R++E E+ + ++
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV---EKNKINNRIADKA 144
Query: 58 EEEEEEEE 65
++ + +
Sbjct: 145 FYQQPDAD 152
Score = 32.1 bits (72), Expect = 0.052
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 12 ERKLKEEEEVKGQRKKAEEKKK--KKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
+L +E E RK EE++K ++ A + + E+ ++ EE + + E+
Sbjct: 77 ADRLTQEPES--IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Score = 30.1 bits (67), Expect = 0.23
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 25 RKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEG 66
R E + +K R E R +R +E + E+E E+
Sbjct: 79 RLTQEPESIRKWREEQR---KRLQELD-AASKVMEQEWREKA 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.012
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 18/92 (19%)
Query: 65 EGLPASTNPPANVISPQSLGHQRPSLDLA-SSPSVKKRSRHAARLNMGDPKDDIHVCILC 123
E P ++ PP+ + PS L+ S+ + ++ + + N P V I
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK-QVEI-- 368
Query: 124 LRAIMNNK------------YGLNMVIKHTEA 143
+++N YGLN+ ++ +A
Sbjct: 369 --SLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Score = 31.9 bits (72), Expect = 0.090
Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 34/141 (24%)
Query: 49 EEGGE--------------EEEEEEEEEEEEGLPAS-------TNPPAN-VIS--PQSLG 84
E E E+ ++ + LPA N N V+S PQSL
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 85 HQRPSLDLASSPSVKKRSR--HAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKH-T 141
+L A +PS +SR + R K L + + ++ L
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSER------KLKFSNRFLPVASPFHSHL-LVPASDLIN 440
Query: 142 EAINSIALSLMHKSLRATLFD 162
+ + +S K ++ ++D
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYD 461
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding
domain, ubiquitin-superfold, armadillo repeats,
actin-binding, coiled coil; 2.30A {Homo sapiens}
Length = 339
Score = 32.9 bits (74), Expect = 0.040
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 118 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKS 155
+ L +M G+ V+ H++ I + S
Sbjct: 178 SYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLS 215
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH
UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 31.8 bits (71), Expect = 0.050
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 16 KEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEE 64
E+++ + +KA E ++K+ E +E+ ++++E+EEEEEE
Sbjct: 24 AEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEE 72
Score = 31.0 bits (69), Expect = 0.083
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 16 KEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
E++ Q ++ + ++K G + E+E +++++E+EEEEEE
Sbjct: 23 AAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEE 72
Score = 26.4 bits (57), Expect = 3.1
Identities = 9/45 (20%), Positives = 27/45 (60%)
Query: 21 VKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
V + + ++ +++ AEG E +E +E+E+E+++++++
Sbjct: 20 VVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDD 64
Score = 26.4 bits (57), Expect = 3.5
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 18 EEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGLPASTNPPANV 77
+ V AE+ ++ + G E+ EE G E+E+E+E+E++++ V
Sbjct: 14 KITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEV 73
Query: 78 ISPQ 81
Sbjct: 74 TDQL 77
Score = 25.2 bits (54), Expect = 9.8
Identities = 7/49 (14%), Positives = 22/49 (44%)
Query: 17 EEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
+ V ++ ++ G + E +E+E+E+E+++++
Sbjct: 14 KITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDD 62
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 32.5 bits (73), Expect = 0.062
Identities = 9/62 (14%), Positives = 23/62 (37%)
Query: 4 GVEALRTCERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEE 63
V+ + + ++ + A E + A + +R E+E E ++ ++
Sbjct: 637 SVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQ 696
Query: 64 EE 65
E
Sbjct: 697 SE 698
Score = 26.3 bits (57), Expect = 5.4
Identities = 13/60 (21%), Positives = 18/60 (30%)
Query: 6 EALRTCERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
EA E E E Q K + + AE + E E + E E +
Sbjct: 725 EAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKA 784
Score = 26.3 bits (57), Expect = 6.7
Identities = 12/54 (22%), Positives = 18/54 (33%)
Query: 12 ERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
+ E G K E + + R EG G + + + E E E E
Sbjct: 709 LEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERV 762
Score = 26.3 bits (57), Expect = 6.8
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 12 ERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
E+ KE E++ E K AE R E E E + + +
Sbjct: 700 EKARKELLELEAMSMAVESTGNAKAEAE-----SRAEAARIEGEGSVLQAKLKA 748
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.063
Identities = 26/175 (14%), Positives = 49/175 (28%), Gaps = 68/175 (38%)
Query: 43 GGERTEEEGGEEEEEEEEEEEEEGL-------PASTNPP-ANVISPQSLGHQRPSL---D 91
T + +E + L P +P+ L S+
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-----SIIAES 336
Query: 92 LASSPSVKKRSRH----------AARLNMGDPK-------------DDIHV-----CIL- 122
+ + +H + LN+ +P H+ ++
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 123 ------CLRAIMN--NKYGLNMVIKH----TEAINSIALSL---------MHKSL 156
+ ++N +KY L V K T +I SI L L +H+S+
Sbjct: 397 FDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 32.2 bits (72), Expect = 0.065
Identities = 7/59 (11%), Positives = 15/59 (25%)
Query: 16 KEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGLPASTNPP 74
+ + E + E E E + + ++E E A+
Sbjct: 73 ETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGD 131
Score = 31.5 bits (70), Expect = 0.12
Identities = 19/138 (13%), Positives = 34/138 (24%), Gaps = 3/138 (2%)
Query: 6 EALRTCERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
E E KL++ E V + A + E E EE+ E E
Sbjct: 53 EGEHARENKLEKAEGVATASETASPASNEAATTETA---EAASAAKPEEKASEVVAETPS 109
Query: 66 GLPASTNPPANVISPQSLGHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLR 125
+ P++ S A + +K + N +
Sbjct: 110 AEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWE 169
Query: 126 AIMNNKYGLNMVIKHTEA 143
++ + G
Sbjct: 170 ELLKWEPGAREDDAINRG 187
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 31.4 bits (70), Expect = 0.11
Identities = 6/52 (11%), Positives = 25/52 (48%)
Query: 14 KLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
++ +EE + + + E + + + +E++ ++ EE +++++
Sbjct: 284 QIDDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDD 335
Score = 30.6 bits (68), Expect = 0.22
Identities = 6/55 (10%), Positives = 25/55 (45%)
Query: 12 ERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEG 66
+ + EE++G ++ + + + + + EE +++++++E+
Sbjct: 286 DDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDEDA 340
Score = 28.7 bits (63), Expect = 0.90
Identities = 8/61 (13%), Positives = 22/61 (36%)
Query: 3 LGVEALRTCERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEE 62
+ + E L EE + EE + ++ E +++++++E
Sbjct: 279 RALASQIDDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDE 338
Query: 63 E 63
+
Sbjct: 339 D 339
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 30.1 bits (68), Expect = 0.25
Identities = 12/61 (19%), Positives = 21/61 (34%)
Query: 5 VEALRTCERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEE 64
V R +L+ E + + + AE G+ + EE E E+ +
Sbjct: 171 VLPPRLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDS 230
Query: 65 E 65
E
Sbjct: 231 E 231
Score = 27.4 bits (61), Expect = 1.8
Identities = 10/54 (18%), Positives = 17/54 (31%)
Query: 17 EEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGLPAS 70
EE++ + + A+ E E EE + E E+ S
Sbjct: 177 TAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDS 230
Score = 25.8 bits (57), Expect = 7.7
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 17 EEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEG 66
+ ++ + EG E + E E+ + E+ +
Sbjct: 187 AAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDA 236
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 30.3 bits (69), Expect = 0.25
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 14 KLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGL 67
KL+E+ + +R + E +K+++ + E E++ ++ +E E L
Sbjct: 10 KLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDL 63
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4;
1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB:
1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A*
1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A*
2ea4_A* 2ga2_A* 2oaz_A*
Length = 478
Score = 30.3 bits (68), Expect = 0.29
Identities = 10/64 (15%), Positives = 25/64 (39%)
Query: 12 ERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGLPAST 71
+ + EE + KKK++++ + +G E+E +E +E + ++
Sbjct: 17 DLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSAL 76
Query: 72 NPPA 75
Sbjct: 77 EDKE 80
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 29.7 bits (67), Expect = 0.45
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 6 EALRTCERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
EA R L +EE+ RK+ + + +K+ E E ++ E E+ E +E+
Sbjct: 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE-----EWADKYKHETEQLVSELKEQN 1032
Score = 28.9 bits (65), Expect = 0.96
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 10 TCERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
E+ + E +E K +E+ ++ + + E E++ EE ++ E + +E
Sbjct: 1020 ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDE 1075
Score = 27.8 bits (62), Expect = 1.9
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 12 ERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGL 67
+KLK E + KK + K + + + +E + E+ L
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIM-------QLQRKIDEQNKEYKSLLEKMNNL 954
Score = 25.8 bits (57), Expect = 9.3
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 4 GVEALRTCERKLKEEEEVKGQ--RKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEE--- 58
G A R LK ++ R A+ + KK + + G E + +
Sbjct: 876 GWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQR 935
Query: 59 --EEEEEE 64
+E+ +E
Sbjct: 936 KIDEQNKE 943
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 29.5 bits (67), Expect = 0.51
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 42 GGGERTEEEGGEEEEEEEEEEEEEGLPASTNPPANVISPQSLGHQRPSLDLASSPSVKKR 101
G E +G E+EE ++EE+ E +P + P+ + + PSV+K
Sbjct: 79 PGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKY 138
Query: 102 SR 103
+R
Sbjct: 139 AR 140
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 29.6 bits (67), Expect = 0.51
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 6 EALRTCERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGG 43
E L ++ ++ K ++KA E KKK GG
Sbjct: 427 EELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGG 464
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 28.5 bits (64), Expect = 0.75
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 12 ERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
E+++ E+ ++ +++ + E GG EE GGEE E E+
Sbjct: 5 EKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTA 58
Score = 26.6 bits (59), Expect = 3.2
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 17 EEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
E+ E + + ++ ++++ E + EE GG EE EE E
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAE 50
Score = 26.2 bits (58), Expect = 5.1
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 15 LKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
+++ E+ ++ +E ++++ E E G EE EE E
Sbjct: 1 MEQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEP 51
Score = 25.5 bits (56), Expect = 8.4
Identities = 12/61 (19%), Positives = 20/61 (32%)
Query: 16 KEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGLPASTNPPA 75
+ E++V Q E ++++ E E EE EE E + A
Sbjct: 3 QGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELA 62
Query: 76 N 76
Sbjct: 63 A 63
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 28.7 bits (65), Expect = 0.76
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 6 EALRTCERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGG 43
E + + L E EE KG R K +E K+ R G
Sbjct: 417 EEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDG 454
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 28.7 bits (65), Expect = 0.82
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 6 EALRTCERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGG 43
L +C ++ +E+ K R+ ++ RA G G
Sbjct: 400 SGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKG 437
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 28.5 bits (63), Expect = 1.0
Identities = 6/51 (11%), Positives = 13/51 (25%)
Query: 25 RKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGLPASTNPPA 75
R+ + + R+ + R + E+ E G
Sbjct: 96 RRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGG 146
>3iz5_S 60S ribosomal protein L18A (L18AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_S 3izc_S 3izs_S
Length = 178
Score = 28.6 bits (63), Expect = 1.1
Identities = 0/52 (0%), Positives = 0/52 (0%), Gaps = 1/52 (1%)
Query: 16 KEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGL 67
Sbjct: 263 - 313
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 28.1 bits (63), Expect = 1.2
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 18/89 (20%)
Query: 1 MRLGVEALRTC--ERKLKEEE---------EVKGQRKK--AEEKKKKKRRAEGRGGGERT 47
++ + + + K K+ E E G K + ++ A+ +
Sbjct: 193 VKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQ-----KEI 247
Query: 48 EEEGGEEEEEEEEEEEEEGLPASTNPPAN 76
+ E+E++ + + A AN
Sbjct: 248 NGDDDEDEDDSDNVMSSDDENAPVATNAN 276
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 27.9 bits (61), Expect = 1.4
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 12 ERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGLPAST 71
R+ E + +RK E K+ +RR + +++ ++E +++ + LP
Sbjct: 129 RRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWD--LPEDE 186
Query: 72 NPPA 75
+ P+
Sbjct: 187 DIPS 190
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 317
Score = 28.2 bits (62), Expect = 1.4
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
Query: 3 LGVEALRTCERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEE 62
L VE + E+VK A + E +EE EE
Sbjct: 251 LSVET----DYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEE 306
Query: 63 EEEGL 67
+E +
Sbjct: 307 SDEDM 311
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES
stationary phase, ribosome hibernation,
ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB:
3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Length = 119
Score = 27.2 bits (61), Expect = 1.5
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 32 KKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEE 64
K + + E R ++ EE EEE
Sbjct: 86 NKLQHKGEARRAATSVKDANFVEEVEEEHHHHH 118
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 27.9 bits (62), Expect = 1.5
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 12 ERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEE 58
+K +E EE + K A+EK +K+R + + + + +E
Sbjct: 383 NQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGV 429
Score = 27.1 bits (60), Expect = 3.1
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 12 ERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGL 67
E + + E E K +R K ++K +K R E + E+ + E +E + E L
Sbjct: 382 ENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDSLLEAL 437
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 27.9 bits (63), Expect = 1.7
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 6 EALRTCERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGG 43
E+++ E+ R+K + K+ +A + G
Sbjct: 402 ESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNG 439
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 27.5 bits (61), Expect = 1.9
Identities = 12/60 (20%), Positives = 23/60 (38%)
Query: 16 KEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGLPASTNPPA 75
+E + ++G+ K EE + + ++E EEE E EE+ +
Sbjct: 176 REVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQN 235
Score = 26.0 bits (57), Expect = 6.1
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 2 RLGVEALRTCERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEE 61
R + + E V K ++K E G E EE+ E +E E E+
Sbjct: 176 REVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEE-EEGAEGAEEKVAEVKEGEAEQ 234
Query: 62 EEEE 65
+
Sbjct: 235 NTDN 238
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 293
Score = 27.5 bits (61), Expect = 1.9
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 39 EGRGGGERTEEEGGEEEEEEEEEEEEEGLPASTNPPA 75
R G + E+E EEEEEEE EE ++G+ T PA
Sbjct: 256 NQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPA 292
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 27.5 bits (60), Expect = 2.4
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 12 ERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGLPAST 71
+K K+E+ + KK E ++K+K R ++ +E E +EE + +
Sbjct: 825 AKKTKKEKGPNEEEKKKEHEEKEKERETN----KKGIKETKENDEEFYKNKYSSKPYKVD 880
Query: 72 NP 73
N
Sbjct: 881 NM 882
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 26.9 bits (59), Expect = 3.0
Identities = 4/40 (10%), Positives = 9/40 (22%)
Query: 26 KKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
+ K ++ R + E + E
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEA 259
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome,
ribosomal R ribosomal protein, STM1; 3.00A
{Saccharomyces cerevisiae} PDB: 3izc_s 3izs_s 3j16_G*
3o5h_M 3jyw_8
Length = 312
Score = 27.0 bits (59), Expect = 3.4
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 16 KEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGL 67
E E++ R + EK A EEEEE +++ G
Sbjct: 258 PEIEDLV-DRIENPEKYAAAAPAATSAASGDAAPAEEAAAEEEEESDDDMGF 308
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.1 bits (60), Expect = 3.6
Identities = 9/62 (14%), Positives = 25/62 (40%)
Query: 6 EALRTCERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
E L+ E EE++ + +++ ++ E E + E+++ +++
Sbjct: 899 EKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQML 958
Query: 66 GL 67
L
Sbjct: 959 DL 960
Score = 26.0 bits (57), Expect = 7.0
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 14 KLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEE 65
L+E+ E + + EK+K+ E E+ ++E +
Sbjct: 1127 DLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDY 1178
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 26.8 bits (59), Expect = 3.6
Identities = 11/59 (18%), Positives = 18/59 (30%)
Query: 16 KEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGLPASTNPP 74
+E ++G + E E++ EE EE EEE +
Sbjct: 179 REVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQA 237
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 26.6 bits (59), Expect = 3.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 12 ERKLKEEEEVKGQRKKAEEKKKKKRR 37
+K +E EE + K A+EK +K+R
Sbjct: 312 NQKRRETEEKMRRAKLAKEKAEKERL 337
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 26.4 bits (59), Expect = 3.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 45 ERTEEEGGEEEEEEEEEEEEE 65
+TE EEEE +EE+E
Sbjct: 216 SKTETVEEPMEEEEAAKEEKE 236
Score = 26.0 bits (58), Expect = 7.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 45 ERTEEEGGEEEEEEEEEEEEE 65
T EE EEEE +EE+E+
Sbjct: 218 TETVEEPMEEEEAAKEEKEDS 238
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD,
oskar mRNA localization, translation; 1.90A {Drosophila
melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Length = 165
Score = 25.9 bits (57), Expect = 4.7
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 17 EEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGLPAS 70
+E+ +G + E+ K +K R G R E E+++E E G S
Sbjct: 16 DEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRS 69
>4ae8_A Thioesterase superfamily member 4; hydrolase, hotdog-fold; 1.59A
{Homo sapiens}
Length = 211
Score = 26.1 bits (57), Expect = 4.8
Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 20/124 (16%)
Query: 58 EEEEEEEEGLPASTNPPANVISPQSLGHQRPSLDLASSPSVKKRSRHAA---RLNMGDPK 114
EE ++ +P + + + PS K+ + + DPK
Sbjct: 10 EEVILKDCSVPNPSWNKDLRLLFDQFMKKCEDGSWKRLPSYKRTPTEWIQDFKTHFLDPK 69
Query: 115 ----DDIHVCILCLRAIMNNKYGLNMVIKHTEAINSI------------ALSLMHKSLRA 158
+ + L R+ + G V+ + + + +H A
Sbjct: 70 LMKEEQMSQAQLFTRSFDDGL-GFEYVMFYNDIEKRMVCLFQGGPYLEGPPGFIHGGAIA 128
Query: 159 TLFD 162
T+ D
Sbjct: 129 TMID 132
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 26.4 bits (59), Expect = 5.8
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 12 ERKLKE--EEEVKGQRKKAEEKKKKKRRAEGRGG 43
E+ LK+ +++ KK +E K+ R A GG
Sbjct: 416 EKGLKDLMDKD-SIVHKKVQEMKEMSRNAVVDGG 448
>1tns_A MU-transposase; DNA-binding protein; NMR {Enterobacteria phage
MU} SCOP: a.6.1.7 PDB: 1tnt_A
Length = 76
Score = 24.8 bits (54), Expect = 6.2
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 21 VKGQRKKAEEKKKKKRRAEGRGGGERTE 48
G A+++ + R G GG+ E
Sbjct: 20 SAGVIYVAKKQGWQNRTRAGVKGGKAIE 47
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 26.0 bits (57), Expect = 6.2
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 16 KEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEEEGL 67
+ ++E + RKK EE++++ R E + + +E EE E + L
Sbjct: 390 EAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDL 441
Score = 26.0 bits (57), Expect = 7.3
Identities = 9/52 (17%), Positives = 25/52 (48%)
Query: 12 ERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEE 63
+E E ++ ++++ E + + + + + + ER + E EE E ++
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDD 440
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 26.0 bits (58), Expect = 7.0
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 53 EEEEEEEEEEEEEGLPASTNPPA 75
EE E+ +E S PPA
Sbjct: 346 ASLEEPEDVVDEAVAITSDAPPA 368
Score = 25.7 bits (57), Expect = 8.5
Identities = 9/74 (12%), Positives = 19/74 (25%), Gaps = 21/74 (28%)
Query: 1 MRLGVEALRTCER--------KLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGG 52
+R + R +L + E+++ + E E+
Sbjct: 310 VRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDAS-------------LEEPEDVVD 356
Query: 53 EEEEEEEEEEEEEG 66
E + EG
Sbjct: 357 EAVAITSDAPPAEG 370
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 25.0 bits (55), Expect = 9.3
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 14 KLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEEEEEEEE 64
+ K KA+++++++R E E + EEEEEE
Sbjct: 91 RTKHAVTEASPMVKAKDERRERRDDFAN------ETADDAEAGDSEEEEEE 135
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt
pseudomonas, protein binding; 2.50A {Pseudomonas
fluorescens}
Length = 452
Score = 25.5 bits (56), Expect = 9.8
Identities = 13/53 (24%), Positives = 20/53 (37%)
Query: 6 EALRTCERKLKEEEEVKGQRKKAEEKKKKKRRAEGRGGGERTEEEGGEEEEEE 58
+ E L + +GQR +E + A+ +EE GEE E
Sbjct: 394 DLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQSTLQLHALQEEDGEESLLE 446
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.128 0.349
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,495,034
Number of extensions: 150741
Number of successful extensions: 1572
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1221
Number of HSP's successfully gapped: 293
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.2 bits)