BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14594
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PAH|A Chain A, Tetrameric Human Phenylalanine Hydroxylase
pdb|2PAH|B Chain B, Tetrameric Human Phenylalanine Hydroxylase
Length = 335
Score = 149 bits (375), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 94/127 (74%), Gaps = 9/127 (7%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
YWFTVEFGLC+Q +KA+GAGLLSSFGELQYCLS+KP+ P E TA+Q Y +TE+QP
Sbjct: 208 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQP 267
Query: 68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
LY+VAESF DAK+K+ F VRY+PYTQ ++V+D+ QL L +IN E+ IL
Sbjct: 268 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDNTQQLKILADSINSEIGIL 327
Query: 119 LTSLKKI 125
++L+KI
Sbjct: 328 CSALQKI 334
>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
Length = 429
Score = 132 bits (331), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 78/105 (74%), Gaps = 9/105 (8%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
YWFTVEFGLC++ +KA+GAGLLSSFGELQYCLSDKP+ P E TA Q Y +TE+QP
Sbjct: 325 YWFTVEFGLCKEGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTACQEYSVTEFQP 384
Query: 68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQ 103
LY+VAESF DAK+K+ F VRY+PYTQ V+V+D+ Q
Sbjct: 385 LYYVAESFSDAKEKVRTFAATIPRPFSVRYDPYTQRVEVLDNTQQ 429
>pdb|1TOH|A Chain A, Tyrosine Hydroxylase Catalytic And Tetramerization Domains
From Rat
Length = 343
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 87/130 (66%), Gaps = 9/130 (6%)
Query: 5 SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
S YWFTVEFGLC+Q G+LKA+GAGLLSS+GEL + LS++P+ + F+P A+Q Y
Sbjct: 213 STVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEEPEVRAFDPDTAAVQPYQDQT 272
Query: 65 YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
YQP+YFV+ESF DAKDK+ F V+++PYT ++DV+DS + ++ + E+
Sbjct: 273 YQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTIQRSLEGVQDEL 332
Query: 116 QILLTSLKKI 125
L +L I
Sbjct: 333 HTLAHALSAI 342
>pdb|2TOH|A Chain A, Tyrosine Hydroxylase Catalytic And Tetramerization Domains
From Rat
Length = 343
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 87/130 (66%), Gaps = 9/130 (6%)
Query: 5 SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
S YWFTVEFGLC+Q G+LKA+GAGLLSS+GEL + LS++P+ + F+P A+Q Y
Sbjct: 213 STVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEEPEVRAFDPDTAAVQPYQDQT 272
Query: 65 YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
YQP+YFV+ESF DAKDK+ F V+++PYT ++DV+DS + ++ + E+
Sbjct: 273 YQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTIQRSLEGVQDEL 332
Query: 116 QILLTSLKKI 125
L +L I
Sbjct: 333 HTLAHALSAI 342
>pdb|4ANP|A Chain A, Crystal Structure Of Human Phenylalanine Hydroxylase In
Complex With A Pharmacological Chaperone
Length = 324
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 78/102 (76%), Gaps = 9/102 (8%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
YWFTVEFGLC+Q +KA+GAGLLSSFGELQYCLS+KP+ P E TA+Q Y +TE+QP
Sbjct: 222 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQP 281
Query: 68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDS 100
LY+VAESF DAK+K+ F VRY+PYTQ ++V+D+
Sbjct: 282 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDN 323
>pdb|1J8T|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase Fe(Ii)
pdb|1J8U|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase Fe(ii)
In Complex With Tetrahydrobiopterin
pdb|1LRM|A Chain A, Crystal Structure Of Binary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase With
Dihydrobiopterin (Bh2)
pdb|1KW0|A Chain A, Catalytic Domain Of Human Phenylalanine Hydroxylase
(Fe(Ii) ) In Complex With Tetrahydrobiopterin And
Thienylalanine
pdb|1MMK|A Chain A, Crystal Structure Of Ternary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase ((Feii))
Complexed With Tetrahydrobiopterin And Thienylalanine
pdb|1MMT|A Chain A, Crystal Structure Of Ternary Complex Of The Catalytic
Domain Of Human Phenylalanine Hydroxylase (Fe(Ii))
Complexed With Tetrahydrobiopterin And Norleucine
Length = 325
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 78/102 (76%), Gaps = 9/102 (8%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
YWFTVEFGLC+Q +KA+GAGLLSSFGELQYCLS+KP+ P E TA+Q Y +TE+QP
Sbjct: 223 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQP 282
Query: 68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDS 100
LY+VAESF DAK+K+ F VRY+PYTQ ++V+D+
Sbjct: 283 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDN 324
>pdb|2XSN|A Chain A, Crystal Structure Of Human Tyrosine Hydroxylase Catalytic
Domain
pdb|2XSN|B Chain B, Crystal Structure Of Human Tyrosine Hydroxylase Catalytic
Domain
pdb|2XSN|C Chain C, Crystal Structure Of Human Tyrosine Hydroxylase Catalytic
Domain
pdb|2XSN|D Chain D, Crystal Structure Of Human Tyrosine Hydroxylase Catalytic
Domain
Length = 343
Score = 128 bits (322), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 87/130 (66%), Gaps = 9/130 (6%)
Query: 5 SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
S YWFTVEFGLC+Q G++KA+GAGLLSS+GEL +CLS++P+ + F+P A+Q Y
Sbjct: 206 STLYWFTVEFGLCKQNGEVKAYGAGLLSSYGELLHCLSEEPEIRAFDPEAAAVQPYQDQT 265
Query: 65 YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
YQ +YFV+ESF DAKDK+ F V+++PYT ++DV+DS + ++ + E+
Sbjct: 266 YQSVYFVSESFSDAKDKLRSYASRIQRPFSVKFDPYTLAIDVLDSPQAVRRSLEGVQDEL 325
Query: 116 QILLTSLKKI 125
L +L I
Sbjct: 326 DTLAHALSAI 335
>pdb|1PAH|A Chain A, Human Phenylalanine Hydroxylase Dimer, Residues 117-424
pdb|3PAH|A Chain A, Human Phenylalanine Hydroxylase Catalytic Domain Dimer
With Bound Adrenaline Inhibitor
pdb|4PAH|A Chain A, Human Phenylalanine Hydroxylase Catalytic Domain Dimer
With Bound Nor- Adrenaline Inhibitor
pdb|5PAH|A Chain A, Human Phenylalanine Hydroxylase Catalytic Domain Dimer
With Bound Dopamine Inhibitor
pdb|6PAH|A Chain A, Human Phenylalanine Hydroxylase Catalytic Domain Dimer
With Bound L- Dopa (3,4-Dihydroxyphenylalanine)
Inhibitor
Length = 308
Score = 127 bits (319), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 76/100 (76%), Gaps = 9/100 (9%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
YWFTVEFGLC+Q +KA+GAGLLSSFGELQYCLS+KP+ P E TA+Q Y +TE+QP
Sbjct: 209 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQP 268
Query: 68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVI 98
LY+VAESF DAK+K+ F VRY+PYTQ ++V+
Sbjct: 269 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVL 308
>pdb|1TDW|A Chain A, Crystal Structure Of Double Truncated Human Phenylalanine
Hydroxylase Bh4-Responsive Pku Mutant A313t.
pdb|1TG2|A Chain A, Crystal Structure Of Phenylalanine Hydroxylase A313t
Mutant With 7,8-Dihydrobiopterin Bound
Length = 308
Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 76/100 (76%), Gaps = 9/100 (9%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
YWFTVEFGLC+Q +KA+GAGLLSSFGELQYCLS+KP+ P E TA+Q Y +TE+QP
Sbjct: 209 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQP 268
Query: 68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVI 98
LY+VAESF DAK+K+ F VRY+PYTQ ++V+
Sbjct: 269 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVL 308
>pdb|1DMW|A Chain A, Crystal Structure Of Double Truncated Human Phenylalanine
Hydroxylase With Bound 7,8-Dihydro-L-Biopterin
Length = 307
Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 76/100 (76%), Gaps = 9/100 (9%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
YWFTVEFGLC+Q +KA+GAGLLSSFGELQYCLS+KP+ P E TA+Q Y +TE+QP
Sbjct: 208 YWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQP 267
Query: 68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVI 98
LY+VAESF DAK+K+ F VRY+PYTQ ++V+
Sbjct: 268 LYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVL 307
>pdb|3E2T|A Chain A, The Catalytic Domain Of Chicken Tryptophan Hydroxylase 1
With Bound Tryptophan
Length = 314
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 75/103 (72%), Gaps = 9/103 (8%)
Query: 5 SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
+ CY+FTVEFGLC+QEGQL+ +GAGLLSS EL++ LS + KPF+P VT Q IT
Sbjct: 210 ATCYFFTVEFGLCKQEGQLRVYGAGLLSSISELKHSLSGSAKVKPFDPKVTCKQECLITT 269
Query: 65 YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVI 98
+Q +YFV+ESFE+AK+KM FGV+YNPYTQSV ++
Sbjct: 270 FQEVYFVSESFEEAKEKMREFAKTIKRPFGVKYNPYTQSVQIL 312
>pdb|1MLW|A Chain A, Crystal Structure Of Human Tryptophan Hydroxylase With
Bound 7,8-Dihydro-L-Biopterin Cofactor And Fe(Iii)
Length = 301
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 67/94 (71%), Gaps = 9/94 (9%)
Query: 5 SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
+ CY+FTVEFGLC+Q+GQL+ FGAGLLSS EL++ LS + KPF+P +T Q IT
Sbjct: 208 ATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAKVKPFDPKITCKQECLITT 267
Query: 65 YQPLYFVAESFEDAKDKMM---------FGVRYN 89
+Q +YFV+ESFEDAK+KM FGV+YN
Sbjct: 268 FQDVYFVSESFEDAKEKMREFTKTIKRPFGVKYN 301
>pdb|3HF6|A Chain A, Crystal Structure Of Human Tryptophan Hydroxylase Type 1
With Bound Lp-521834 And Fe
pdb|3HF8|A Chain A, Crystal Structure Of Human Tryoptophan Hydroxylase Type 1
With Bound Lp-533401 And Fe
pdb|3HFB|A Chain A, Crystal Structure Of Human Tryoptophan Hydroxylase Type 1
With Lp- 534193
Length = 290
Score = 101 bits (252), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 61/78 (78%)
Query: 5 SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
+ CY+FTVEFGLC+Q+GQL+ FGAGLLSS EL++ LS + KPF+P +T Q IT
Sbjct: 206 ATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAKVKPFDPKITCKQECLITT 265
Query: 65 YQPLYFVAESFEDAKDKM 82
+Q +YFV+ESFEDAK+KM
Sbjct: 266 FQDVYFVSESFEDAKEKM 283
>pdb|1LTU|A Chain A, Crystal Structure Of Chromobacterium Violaceum, Apo (No
Iron Bound) Structure
pdb|1LTV|A Chain A, Crystal Structure Of Chromobacterium Violaceum
Phenylalanine Hydroxylase, Structure With Bound Oxidized
Fe(Iii)
pdb|1LTZ|A Chain A, Crystal Structure Of Chromobacterium Violaceum
Phenylalanine Hydroxylase, Structure Has Bound Iron
(iii) And Oxidized Cofactor 7,8-dihydrobiopterin
Length = 297
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQ 66
YW+TVEFGL ++ +GAG+LSS E YCL S P R F+ Y I +Q
Sbjct: 179 YWYTVEFGLINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTRYRIDTFQ 238
Query: 67 PLYFVAESFE 76
YFV +SF+
Sbjct: 239 KTYFVIDSFK 248
>pdb|3TK2|A Chain A, Crystallographic Structure Of Phenylalanine Hydroxylase
From Chromobacterium Violaceum Cocrystallized With
Phenylalanine In A Site Distal To The Active Site
pdb|3TK4|A Chain A, Crystal Structure Of Phenylalanine Hydroxylase From
Chromobacterium Violaceum Bound To Cobalt
Length = 302
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQ 66
YW+TVEFGL ++ +GAG+LSS E YCL S P R F+ Y I +Q
Sbjct: 184 YWYTVEFGLINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTRYRIDTFQ 243
Query: 67 PLYFVAESFE 76
YFV +SF+
Sbjct: 244 KTYFVIDSFK 253
>pdb|3TCY|A Chain A, Crystallographic Structure Of Phenylalanine Hydroxylase
From Chromobacterium Violaceum (Cpah) Bound To
Phenylalanine In A Site Distal To The Active Site
Length = 302
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQ 66
YW+TVEFGL ++ +GAG+LSS E YCL S P R F+ Y I +Q
Sbjct: 184 YWYTVEFGLINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTRYRIDTFQ 243
Query: 67 PLYFVAESFE 76
YFV +SF+
Sbjct: 244 KTYFVIDSFK 253
>pdb|2V27|A Chain A, Structure Of The Cold Active Phenylalanine Hydroxylase
From Colwellia Psychrerythraea 34h
pdb|2V27|B Chain B, Structure Of The Cold Active Phenylalanine Hydroxylase
From Colwellia Psychrerythraea 34h
Length = 275
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKP-QRKPFEPSVTALQTYPITEYQ 66
YWFT+EFGL L+ +G G+LSS GE Y +++ RKPF+ Y I Q
Sbjct: 162 YWFTIEFGLLDTPKGLRIYGGGVLSSPGETDYAMNNTDVDRKPFDILDVLRTPYRIDIMQ 221
Query: 67 PLYFVAESFEDAKDKMMFGV 86
P+Y++ D + F V
Sbjct: 222 PIYYMLTKVSDLDEIRKFEV 241
>pdb|2V28|A Chain A, Apo Structure Of The Cold Active Phenylalanine Hydroxylase
From Colwellia Psychrerythraea 34h
pdb|2V28|B Chain B, Apo Structure Of The Cold Active Phenylalanine Hydroxylase
From Colwellia Psychrerythraea 34h
Length = 267
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKP-QRKPFEPSVTALQTYPITEYQ 66
YWFT+EFGL L+ +G G+LSS GE Y +++ RKPF+ Y I Q
Sbjct: 162 YWFTIEFGLLDTPKGLRIYGGGVLSSPGETDYAMNNTDVDRKPFDILDVLRTPYRIDIMQ 221
Query: 67 PLYFVAESFEDAKDKMMFGV 86
P+Y++ D + F V
Sbjct: 222 PIYYMLTKVSDLDEIRKFEV 241
>pdb|2JZL|A Chain A, Structure Of Nccvnh (N. Crassa Cvnh) (Casp Target)
Length = 114
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 99 DSKVQLSELVQNINGEMQ 116
D V L+E+V+N+NGE Q
Sbjct: 94 DRDVNLTEIVENVNGEFQ 111
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 62 ITEYQPLYFVAESFEDAKDKMMFGVR---YNPYTQSVDVIDS-KVQLSE 106
++E QPL+F+AE+ + G+R +N + D++D KV+ S+
Sbjct: 107 VSELQPLFFLAENVPGIMQEKYSGIRNKAFNLVSGDYDILDPIKVKASD 155
>pdb|2F40|A Chain A, Structure Of A Novel Protein From Backbone-Centered Nmr
Data And Nmr- Assisted Structure Prediction
Length = 96
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 84 FGVRYNPYTQSVDVI--DSKVQLSELVQNINGEM 115
+ V NPY + +V+ DSKV + EL + + GE+
Sbjct: 37 YRVFINPYAKVAEVVIDDSKVNIEELKEKLKGEV 70
>pdb|3N09|C Chain C, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|D Chain D, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|E Chain E, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|F Chain F, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|G Chain G, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|H Chain H, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|I Chain I, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|J Chain J, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|K Chain K, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|L Chain L, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|M Chain M, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|N Chain N, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|O Chain O, Atomic Model Of An Infectious Rotavirus Particle
Length = 397
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 68 LYFVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNING 113
LY ++++ +DA+DK++ G Y+ +V D Q ++++ +NG
Sbjct: 4 LYSLSKTLKDARDKIVEGTLYS------NVSDLIQQFNQMIITMNG 43
>pdb|3KZ4|C Chain C, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|D Chain D, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|E Chain E, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|F Chain F, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|G Chain G, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|H Chain H, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|I Chain I, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|J Chain J, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|K Chain K, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|L Chain L, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|M Chain M, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|N Chain N, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|O Chain O, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|4F5X|C Chain C, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|D Chain D, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|E Chain E, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|F Chain F, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|G Chain G, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|H Chain H, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|I Chain I, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|J Chain J, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|K Chain K, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|L Chain L, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|M Chain M, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|N Chain N, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|O Chain O, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 397
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 68 LYFVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNING 113
LY ++++ +DA+DK++ G Y+ +V D Q ++++ +NG
Sbjct: 4 LYSLSKTLKDARDKIVEGTLYS------NVSDLIQQFNQMIITMNG 43
>pdb|1QHD|A Chain A, Crystal Structure Of Vp6, The Major Capsid Protein Of
Group A Rotavirus
Length = 398
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 68 LYFVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNING 113
LY ++++ +DA+DK++ G Y+ +V D Q ++++ +NG
Sbjct: 5 LYSLSKTLKDARDKIVEGTLYS------NVSDLIQQFNQMIITMNG 44
>pdb|3GZU|C Chain C, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|D Chain D, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|E Chain E, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|F Chain F, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|G Chain G, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|H Chain H, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|I Chain I, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|J Chain J, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|K Chain K, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|L Chain L, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|M Chain M, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|N Chain N, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|O Chain O, Vp7 Recoated Rotavirus Dlp
Length = 397
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 68 LYFVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNING 113
LY ++++ +DA+DK++ G Y+ +V D Q ++++ +NG
Sbjct: 4 LYSLSKTLKDARDKIVEGTLYS------NVSDLIQQFNQMIITMNG 43
>pdb|1BH8|A Chain A, Htafii18HTAFII28 HETERODIMER CRYSTAL STRUCTURE
pdb|1BH9|A Chain A, Htafii18HTAFII28 HETERODIMER CRYSTAL STRUCTURE WITH BOUND
Pcmbs
Length = 45
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 84 FGVRYNPYTQSVDVIDSKV 102
FG NPYT+SVD+++ V
Sbjct: 13 FGDDQNPYTESVDILEDLV 31
>pdb|3TCV|A Chain A, Crystal Structure Of A Gcn5-Related N-Acetyltransferase
From Brucella Melitensis
pdb|3TCV|B Chain B, Crystal Structure Of A Gcn5-Related N-Acetyltransferase
From Brucella Melitensis
Length = 246
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 44 KPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDKMMFGVRYNPYTQS 94
KP+RK FE L+ ++ F A S EDA+ + + P T++
Sbjct: 33 KPERKIFEGRYVRLEPLNAQKHGDELFAASSVEDAEQRFTWLFETPPATRA 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,585,948
Number of Sequences: 62578
Number of extensions: 127137
Number of successful extensions: 236
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 29
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)