Query psy14594
Match_columns 125
No_of_seqs 106 out of 461
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 23:53:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3820|consensus 100.0 2.3E-55 5E-60 375.5 8.6 125 1-125 324-457 (461)
2 PF00351 Biopterin_H: Biopteri 100.0 6.2E-55 1.3E-59 365.2 5.0 124 1-124 200-332 (332)
3 TIGR01269 Tyr_3_monoox tyrosin 100.0 8.9E-54 1.9E-58 369.1 8.1 125 1-125 323-456 (457)
4 TIGR01268 Phe4hydrox_tetr phen 100.0 2.8E-53 6E-58 365.4 9.5 125 1-125 302-435 (436)
5 TIGR01270 Trp_5_monoox tryptop 100.0 5.9E-53 1.3E-57 365.3 8.4 125 1-125 329-463 (464)
6 cd03347 eu_PheOH Eukaryotic ph 100.0 2.2E-47 4.9E-52 316.9 5.6 98 1-98 200-306 (306)
7 cd03345 eu_TyrOH Eukaryotic ty 100.0 5.9E-44 1.3E-48 295.7 2.6 91 1-91 199-298 (298)
8 cd03346 eu_TrpOH Eukaryotic tr 100.0 1.5E-40 3.2E-45 274.4 3.1 85 1-85 200-285 (287)
9 cd00361 arom_aa_hydroxylase Bi 100.0 5.5E-40 1.2E-44 262.8 3.4 80 2-81 142-221 (221)
10 cd03348 pro_PheOH Prokaryotic 100.0 1.9E-39 4E-44 260.8 3.5 79 2-80 148-227 (228)
11 TIGR01267 Phe4hydrox_mono phen 100.0 4.7E-39 1E-43 261.1 4.2 82 2-83 148-230 (248)
12 PRK11913 phhA phenylalanine 4- 100.0 1.3E-38 2.8E-43 261.6 4.9 81 3-83 165-246 (275)
13 PRK14055 aromatic amino acid h 100.0 2.7E-37 5.8E-42 260.1 5.9 80 3-82 251-330 (362)
14 PRK14056 phenylalanine 4-monoo 100.0 1.4E-35 3E-40 261.5 5.7 82 2-83 201-282 (578)
15 COG3186 Phenylalanine-4-hydrox 100.0 5.2E-33 1.1E-37 227.8 2.2 81 3-83 180-261 (291)
16 PF12218 End_N_terminal: N ter 56.3 4.8 0.0001 27.4 0.5 47 19-75 20-66 (67)
17 PF07865 DUF1652: Protein of u 49.4 25 0.00055 23.7 3.2 30 87-116 31-69 (69)
18 smart00666 PB1 PB1 domain. Pho 47.9 49 0.0011 21.3 4.4 40 73-112 21-69 (81)
19 cd06398 PB1_Joka2 The PB1 doma 40.7 61 0.0013 22.7 4.2 39 73-111 25-73 (91)
20 PF08700 Vps51: Vps51/Vps67; 37.9 5.7 0.00012 26.3 -1.4 42 84-125 43-84 (87)
21 PF10213 MRP-S28: Mitochondria 35.7 45 0.00097 24.8 3.0 40 78-117 44-93 (127)
22 PRK00488 pheS phenylalanyl-tRN 34.6 43 0.00094 28.9 3.2 65 33-97 172-259 (339)
23 cd05992 PB1 The PB1 domain is 34.4 1E+02 0.0022 19.5 4.3 41 73-113 21-70 (81)
24 PF03088 Str_synth: Strictosid 33.4 33 0.00072 23.9 1.9 15 84-98 38-52 (89)
25 cd06830 PLPDE_III_ADC Type III 33.3 74 0.0016 27.2 4.4 62 28-92 66-148 (409)
26 cd06408 PB1_NoxR The PB1 domai 32.6 68 0.0015 22.6 3.4 40 74-114 23-70 (86)
27 PF00564 PB1: PB1 domain; Int 32.1 91 0.002 20.0 3.8 41 73-113 22-71 (84)
28 PLN02853 Probable phenylalanyl 29.6 52 0.0011 29.9 2.9 54 44-97 340-414 (492)
29 PF09741 DUF2045: Uncharacteri 28.9 50 0.0011 27.4 2.5 62 9-83 87-151 (237)
30 PF07833 Cu_amine_oxidN1: Copp 25.4 74 0.0016 20.4 2.4 27 75-101 9-35 (93)
31 TIGR03512 GldD_lipo gliding mo 22.2 1.1E+02 0.0023 24.7 3.2 50 63-123 134-184 (186)
32 PRK08961 bifunctional aspartat 22.1 41 0.00089 31.8 0.9 70 23-92 545-625 (861)
33 PF06148 COG2: COG (conserved 21.9 53 0.0011 23.7 1.3 38 84-121 47-84 (133)
34 cd06402 PB1_p62 The PB1 domain 21.7 97 0.0021 21.7 2.6 55 43-112 12-76 (87)
35 PF05377 FlaC_arch: Flagella a 21.2 1.1E+02 0.0023 20.1 2.5 26 100-125 8-33 (55)
36 cd07233 Glyoxalase_I Glyoxalas 21.0 1.7E+02 0.0037 18.9 3.6 20 64-83 70-89 (121)
37 PF02784 Orn_Arg_deC_N: Pyrido 20.6 42 0.0009 26.2 0.6 61 26-91 42-117 (251)
38 PF04491 Pox_T4_N: Poxvirus T4 20.5 74 0.0016 20.3 1.6 12 15-26 30-41 (46)
39 PF06507 Auxin_resp: Auxin res 20.4 69 0.0015 22.2 1.6 28 82-109 9-36 (83)
40 PRK05354 arginine decarboxylas 20.4 1.3E+02 0.0029 27.9 3.8 62 28-93 125-208 (634)
41 PF12447 DUF3683: Protein of u 20.3 1.2E+02 0.0027 22.6 2.9 37 84-121 56-92 (115)
No 1
>KOG3820|consensus
Probab=100.00 E-value=2.3e-55 Score=375.54 Aligned_cols=125 Identities=63% Similarity=1.067 Sum_probs=123.6
Q ss_pred CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD 80 (125)
Q Consensus 1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~ 80 (125)
|++|++|||||||||||+++|++||||||||||+|||+||+|++|++++|||+.++.|+|.||+|||.|||+|||+||++
T Consensus 324 IEKLaTlywFtVEFGLCkq~g~~KayGAGLLSS~gEL~hals~~pei~~FdP~vt~vq~y~it~yQp~YfvaeSFedAk~ 403 (461)
T KOG3820|consen 324 IEKLATLYWFTVEFGLCKQDGELKAYGAGLLSSYGELQHALSDKPEIKDFDPEVTAVQKYLITTYQPLYFVAESFEDAKE 403 (461)
T ss_pred HHHhheeeEEEEEEeeeccCCeeeeechhhhhhHHHHHHHhcCCccccCCCccceeeeeccccccccceeehhhHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc---------eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHHhhcC
Q psy14594 81 KMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI 125 (125)
Q Consensus 81 ~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~al~k~ 125 (125)
||| |+|||||||+||||||+.++|++++++|++||+.|++||+||
T Consensus 404 KlR~fa~ti~RPF~VrynpyT~svEvLds~~~l~~~~~~l~~dl~~l~~Al~ki 457 (461)
T KOG3820|consen 404 KLRKFASTIKRPFSVRYNPYTQSVEVLDSSAKLERLVSSLRSDLSILTHALSKI 457 (461)
T ss_pred HHHHHHHhCCCCceeeeccccceehhhcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999999999999999999999999999986
No 2
>PF00351 Biopterin_H: Biopterin-dependent aromatic amino acid hydroxylase; InterPro: IPR019774 Phenylalanine, tyrosine and tryptophan hydroxylases constitute a family of tetrahydrobiopterin-dependent aromatic amino acid hydroxylases, all of which are rate-limiting catalysts for important metabolic pathways []. The proteins are structurally and functionally related, each containing iron, and catalysing ring hydroxylation of aromatic amino acids, using tetra-hydrobiopterin (BH4) as a substrate. All are regulated by phosphorylation at serines in their N-termini. It has been suggested that the proteins each contain a conserved C-terminal catalytic (C) domain and an unrelated N-terminal regulatory (R) domain. It is possible that the R domains arose from genes that were recruited from different sources to combine with the common gene for the catalytic core. Thus, by combining with the same C domain, the proteins acquired the unique regulatory properties of the separate R domains. A variety of enzymes belong to this family that includes, phenylalanine-4-hydroxylase from Chromobacterium violaceum where it is copper-dependent; it is iron-dependent in Pseudomonas aeruginosa, phenylalanine-4-hydroxylase catalyzes the conversion of phenylalanine to tyrosine. In humans, deficiencies are the cause of phenylketonuria, the most common inborn error of amino acid metabolism [], tryptophan 5-hydroxylase catalyzes the rate-limiting step in serotonin biosynthesis: the conversion of tryptophan to 3-hydroxy-anthranilate and tyrosine 3-hydroxylase catalyzes the rate limiting step in catecholamine biosynthesis: the conversion of tyrosine to 3,4-dihydroxy-L-phenylalanine.; GO: 0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1PHZ_A 2PHM_A 2V28_A 2V27_A 1PAH_A 1DMW_A 1TG2_A 1KW0_A 1MMT_A 1TDW_A ....
Probab=100.00 E-value=6.2e-55 Score=365.20 Aligned_cols=124 Identities=57% Similarity=1.022 Sum_probs=111.0
Q ss_pred CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD 80 (125)
Q Consensus 1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~ 80 (125)
+++|+||||||||||||+|+|++||||||||||+||++||+|++|+++||||+++++|+|+|++|||+|||++||+||++
T Consensus 200 i~~LarlyWfTVEFGL~~e~g~lkaYGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~~~~ 279 (332)
T PF00351_consen 200 IEKLARLYWFTVEFGLCRENGELKAYGAGLLSSYGELEHALSDKPEIRPFDPERVARTPYDITTYQPVYFVIESFEDAKE 279 (332)
T ss_dssp HHHHHHHHHTTTTT-EEEETTEEEE--HHHHT-HHHHHHHTSSSSEEEE--HHHHCTS---SSSS-SEEEEESSHHHHHH
T ss_pred HHHHHhheeeeeEEEEEecCCceEEecccccccccccccccCCCCeeeccCHHHHhCCCCCCCcccceEEEECCHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc---------eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHHhhc
Q psy14594 81 KMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKK 124 (125)
Q Consensus 81 ~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~al~k 124 (125)
+|| |+++|||+|+||+|+|+++++++++++||+||++|++||+|
T Consensus 280 klr~fa~~i~rpf~~~ydp~t~svevl~~~~~~~~~~~~~~~~l~~l~~al~k 332 (332)
T PF00351_consen 280 KLREFAATIKRPFSVRYDPYTQSVEVLDSPQKIKNLVNDLKEELSILSNALSK 332 (332)
T ss_dssp HHHHHHHTS--SSEEEEETTTTEEEEE-SHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCccccCCCcceEEecCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999 99999999999999999999999999999999999999987
No 3
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=100.00 E-value=8.9e-54 Score=369.09 Aligned_cols=125 Identities=47% Similarity=0.858 Sum_probs=122.9
Q ss_pred CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD 80 (125)
Q Consensus 1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~ 80 (125)
+++|+||||||||||||+++|++||||||||||+||+.||+|++|+++||||+.+++|+|+|++|||+|||++||++|++
T Consensus 323 i~~LarlYWfTVEFGLi~e~g~lKaYGAGLLSS~GEl~~als~~p~~~pfdp~~~~~t~Y~I~~~Qp~YFV~eSfe~l~~ 402 (457)
T TIGR01269 323 IEKLSTLYWFTVEFGLCKENGETKAYGAGLLSSYGELEHAFSDLSEKRPFNPNDAAVQPYQDQGYQKIYFVTESFEDAKR 402 (457)
T ss_pred HHHHhHhHhhhhhcccccCCCceeEeeceeecCHHHHHHHcCCCCccCCCCHHHHhcCCCCCCCcCCceEEeCCHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc---------eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHHhhcC
Q psy14594 81 KMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI 125 (125)
Q Consensus 81 ~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~al~k~ 125 (125)
+|| |.++|||||+||+|+|+++++++++++||+||+.|++||+||
T Consensus 403 ~l~~f~~~~~rPf~v~y~pyt~svevl~~~~~~~~~~~~~~~e~~~l~~al~k~ 456 (457)
T TIGR01269 403 KLRNYINTSGRPFIVRFDPITETVEVLDRFSKRKELLKHVKEEIGQLTTALNHL 456 (457)
T ss_pred HHHHHHHhCCCCcceeecCccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999 999999999999999999999999999999999999999986
No 4
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=100.00 E-value=2.8e-53 Score=365.37 Aligned_cols=125 Identities=60% Similarity=1.086 Sum_probs=122.7
Q ss_pred CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD 80 (125)
Q Consensus 1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~ 80 (125)
+++|+||||||||||||+++|++||||||||||+||++||||++|+++||||+++++|+|+|++|||+|||++||++|++
T Consensus 302 i~~LarlyWfTVEFGL~~~~~~~k~YGAGlLSS~gE~~~~ls~~~~~~~fd~~~~~~~~y~i~~~Q~~YFv~~sf~~l~~ 381 (436)
T TIGR01268 302 IEKLATLYWFTIEFGLCKQDGEKKAYGAGLLSSFGELQYCLSDKPEVVDFDPEVTCVTKYPITEFQPLYFLAESFEDAKE 381 (436)
T ss_pred HHHHhhhheeeeccceecCCCceeEeccchhcCHHHHHHhcCCCCccCCCCHHHHhcCCCCCCCcCCceEEeCCHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc---------eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHHhhcC
Q psy14594 81 KMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI 125 (125)
Q Consensus 81 ~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~al~k~ 125 (125)
+|+ |.++|||||+||+|+|++++++++++.+|+|++.|++||+||
T Consensus 382 ~~~~~~~~~~~pf~~~y~~~t~~v~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 435 (436)
T TIGR01268 382 KLKSFAATIPRPFSVRYNAYTQRVEILDKKAQLQRLADDIRSEISILQEALGKL 435 (436)
T ss_pred HHHHHHHhCCCCccceecCccceEEecCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 997 999999999999999999999999999999999999999986
No 5
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=100.00 E-value=5.9e-53 Score=365.34 Aligned_cols=125 Identities=45% Similarity=0.794 Sum_probs=122.6
Q ss_pred CccceeeeeEEEEEEEeee-CCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHh
Q psy14594 1 MVEWSLCYWFTVEFGLCRQ-EGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAK 79 (125)
Q Consensus 1 ~~~LarlyWfTVEFGL~~e-~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~ 79 (125)
+++|+||||||||||||++ +|++||||||||||+||+.|||+++|+++||||+.+++|+|+|++|||+|||++||++|+
T Consensus 329 i~~LarlyWfTVEFGLi~e~~g~lkaYGAGlLSS~gEl~~~ls~~~~~~pfd~~~~~~~~Y~i~~~Qp~YFv~~Sfe~l~ 408 (464)
T TIGR01270 329 IKKLATLYFFTIEFGLCKQDDEQFKVYGAGLLSSVAELQHALSGSAKIKPFDPDRVCEQECLITTFQNAYFYTRSFEEAK 408 (464)
T ss_pred HHHHhHhhhhhhhccceecCCCCeEEeeceeeCCHHHHHHHccCCCccCCCCHHHHhcCCCCCCCcccceEEeCCHHHHH
Confidence 4679999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccc---------eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHHhhcC
Q psy14594 80 DKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI 125 (125)
Q Consensus 80 ~~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~al~k~ 125 (125)
++|+ |.++|||||+||+|+|+++++++++++||+||+.|++||+||
T Consensus 409 ~~l~~f~~~~~rpf~~~y~p~t~~v~vl~~~~~~~~~~~~~~~~~~~l~~al~~~ 463 (464)
T TIGR01270 409 EKMREFTNTIKRPFGVRYNPYTESVEVLKNSKSITLAVNELRSDLNLVAGALHKI 463 (464)
T ss_pred HHHHHHHHhcCCCccceEcCccceEEeeCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9997 999999999999999999999999999999999999999986
No 6
>cd03347 eu_PheOH Eukaryotic phenylalanine-4-hydroxylase (eu_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic phenylalanine-4-hydroxylase (pro_PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH catalyzes the first and rate-limiting step in the metabolism of the amino acid L-phenylalanine (L-Phe), the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor. The catalytic activity of the tetrameric enzyme is tightly regulated by the binding of L-Phe and BH4 as well as by phosphorylation. Mutations in the human enzyme are linked to a severe variant of phenylketonuria.
Probab=100.00 E-value=2.2e-47 Score=316.94 Aligned_cols=98 Identities=69% Similarity=1.262 Sum_probs=95.8
Q ss_pred CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD 80 (125)
Q Consensus 1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~ 80 (125)
+++|+||||||||||||+++|++||||||||||+||++||||++|+++||||+++++|+|+|++|||+|||++||+||++
T Consensus 200 i~~LarlYWfTVEFGLi~e~g~lkaYGAGlLSS~GE~~~als~~p~~~pfd~~~~~~t~Y~I~~~Qp~YFv~~Sfe~l~~ 279 (306)
T cd03347 200 IEKLATVYWFTVEFGLCKQGGSIKAYGAGLLSSFGELQYCLSDKPELLPFEPEKTAVTKYPITEFQPLYYVAESFEDAKE 279 (306)
T ss_pred HHHHhhheeeeeccccccCCCceeEeecchhcCHHHHHHHcCCCCccCCCCHHHHhCCCCCCCCcCCceEEeCCHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc---------eeeeecCccceEEee
Q psy14594 81 KMM---------FGVRYNPYTQSVDVI 98 (125)
Q Consensus 81 ~lr---------F~~~Yd~~t~si~~~ 98 (125)
+|| |.++|||||+||+|+
T Consensus 280 ~l~~f~~~~~rpf~~~y~~~t~~v~~~ 306 (306)
T cd03347 280 KLRNFAATIPRPFSVRYNPYTQRIEVL 306 (306)
T ss_pred HHHHHHHhCCCCccceecCccceEeeC
Confidence 999 999999999999986
No 7
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=100.00 E-value=5.9e-44 Score=295.66 Aligned_cols=91 Identities=62% Similarity=1.163 Sum_probs=89.0
Q ss_pred CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD 80 (125)
Q Consensus 1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~ 80 (125)
+++|+||||||||||||+++|++||||||||||+||++||+|++|+++||||+.+++|+|+|++|||+|||++||++|++
T Consensus 199 i~~LarlYWfTVEFGLi~e~g~lkaYGAGlLSS~gEl~~als~~p~~~pfd~~~~~~t~Y~i~~~Qp~YFv~~Sfe~l~~ 278 (298)
T cd03345 199 IEKLSTLYWFTVEFGLCKENGELKAYGAGLLSSYGELLHALSDEPEHRPFDPAATAVQPYQDQTYQPIYFVSESFSDAKD 278 (298)
T ss_pred HHHHhHhhhhhhhcccccCCCceeEeechhhcCHHHHHHHCCCCCccCCCCHHHHhcCCCCCCCcCCceEEeCCHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc---------eeeeecCc
Q psy14594 81 KMM---------FGVRYNPY 91 (125)
Q Consensus 81 ~lr---------F~~~Yd~~ 91 (125)
+|| |.++||||
T Consensus 279 ~l~~f~~~~~rpf~~~y~~~ 298 (298)
T cd03345 279 KLRNYASTMKRPFSVRYDPY 298 (298)
T ss_pred HHHHHHHhcCCCCcccCCCC
Confidence 999 99999997
No 8
>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH). TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.
Probab=100.00 E-value=1.5e-40 Score=274.38 Aligned_cols=85 Identities=58% Similarity=0.998 Sum_probs=82.1
Q ss_pred CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD 80 (125)
Q Consensus 1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~ 80 (125)
+++|+||||||||||||+++|++||||||||||+||++||++++|+++||||+.+++|+|+|++|||+|||++||++|++
T Consensus 200 i~~LarlYWfTVEFGLi~e~~~lkaYGAGiLSS~gE~~~als~~~~~~pfd~~~~~~t~Y~i~~~Qp~YFv~~Sfe~l~~ 279 (287)
T cd03346 200 IQKLATCYFFTVEFGLCKQDGQLKVYGAGLLSSIGELKHALSGEAKVKPFDPKVTCKQECLITTFQEAYFVSESFEEAKE 279 (287)
T ss_pred HHHHhHhhhhhcccccccCCCceeEeccchhcCHHHHHHHccCCCccCCCCHHHHhCCCCCCCCcCCceEEeCCHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-ee
Q psy14594 81 KMM-FG 85 (125)
Q Consensus 81 ~lr-F~ 85 (125)
+|| |.
T Consensus 280 ~l~~f~ 285 (287)
T cd03346 280 KMREFA 285 (287)
T ss_pred HHHHHh
Confidence 998 53
No 9
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=100.00 E-value=5.5e-40 Score=262.82 Aligned_cols=80 Identities=60% Similarity=1.037 Sum_probs=77.8
Q ss_pred ccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhhc
Q psy14594 2 VEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDK 81 (125)
Q Consensus 2 ~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~~ 81 (125)
.+|+||||||||||||+++|++||||||||||+||++||++++|+++||||+++++|+|+|++|||+|||++||++|+++
T Consensus 142 ~~LarlyWfTVEFGLi~e~~~lk~YGAGiLSS~gE~~~~l~~~~~~~~fd~~~v~~t~Y~i~~~Qp~yFvi~sf~~l~~~ 221 (221)
T cd00361 142 EKLARLYWFTVEFGLIKEDGELKAYGAGLLSSYGELQHALSDKPKRIPFDPERVARTPYDITSFQPTYFVIESFEQLKEK 221 (221)
T ss_pred HHHHHhhhhhcccccccCCCceeEeechhhcCHHHHHHHccCCCccCCCCHHHHhCCCCCCCCcCCceEEeCCHHHHhhC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999874
No 10
>cd03348 pro_PheOH Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan hydroxylase (TrpOH). PheOH catalyzes the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor.
Probab=100.00 E-value=1.9e-39 Score=260.81 Aligned_cols=79 Identities=44% Similarity=0.809 Sum_probs=76.9
Q ss_pred ccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCC-CCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594 2 VEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSD-KPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD 80 (125)
Q Consensus 2 ~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~-~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~ 80 (125)
++|+||||||||||||+++|++||||||||||+||+.||+++ +|+++||||+++++|+|+|++|||+|||++||++|.+
T Consensus 148 ~~LarlyWfTVEFGLi~e~~~lk~YGAGiLSS~gE~~~al~~~~~~~~~fd~~~v~~t~Y~i~~~Qp~YFv~~sf~~L~~ 227 (228)
T cd03348 148 ALLARLYWYTVEFGLIQEPGGLRIYGAGILSSPGETLYALESPDPNRIPFDLERVMRTPYRIDSFQPTYFVIDSFEQLYD 227 (228)
T ss_pred HHHhHhhhhhccccccccCCceeEeccchhcCHHHHHHHcCCCCCcccCCCHHHHhCCCCCCCCcCCceEEeCCHHHHhh
Confidence 579999999999999999999999999999999999999988 8999999999999999999999999999999999976
No 11
>TIGR01267 Phe4hydrox_mono phenylalanine-4-hydroxylase, monomeric form. This family is of biopterin and metal-dependent hydroxylases is related to a family of longer, multimeric aromatic amino acid hydroxylases that have additional N-terminal regulatory sequences. These include tyrosine 3-monooxygenase, phenylalanine-4-hydroxylase, and tryptophan 5-monoxygenase.
Probab=100.00 E-value=4.7e-39 Score=261.08 Aligned_cols=82 Identities=38% Similarity=0.627 Sum_probs=78.8
Q ss_pred ccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhh-CCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594 2 VEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD 80 (125)
Q Consensus 2 ~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~al-s~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~ 80 (125)
++|+||||||||||||+++|++||||||||||+||++||+ |++|+++||||+++++|+|+|++|||+|||++||++|.+
T Consensus 148 ~~LarlyWfTVEFGLi~e~~~lr~YGAGiLSS~gE~~~al~s~~p~~~pfd~~~v~~t~Y~i~~~Qp~YFvi~sf~~L~~ 227 (248)
T TIGR01267 148 EMLARLYWYTIEFGLVETDQGKRIYGAGILSSPKETVYSLESDEPLHVAFDLLEAMRTPYRIDIFQPLYFVLPSFKRLFD 227 (248)
T ss_pred HHHhhhheeeeeccccccCCceeEecchhhcCHHHHHHHhcCCCCcccCCCHHHHhCCCCCCCCcCCceEEeCCHHHHHH
Confidence 5799999999999999999999999999999999999999 789999999999999999999999999999999999988
Q ss_pred ccc
Q psy14594 81 KMM 83 (125)
Q Consensus 81 ~lr 83 (125)
.+.
T Consensus 228 ~~~ 230 (248)
T TIGR01267 228 AAQ 230 (248)
T ss_pred HHH
Confidence 653
No 12
>PRK11913 phhA phenylalanine 4-monooxygenase; Reviewed
Probab=100.00 E-value=1.3e-38 Score=261.58 Aligned_cols=81 Identities=48% Similarity=0.806 Sum_probs=79.0
Q ss_pred cceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhh-CCCCccccCChhhhccccCCCCcccceeEEecChHHHhhc
Q psy14594 3 EWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDK 81 (125)
Q Consensus 3 ~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~al-s~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~~ 81 (125)
+|+||||||||||||+++|++||||||||||+||+.||+ +++|+++||||+.+++|+|+|++|||+|||++||++|.+.
T Consensus 165 ~LarlyWfTVEFGLi~e~~~lk~YGAGiLSS~gE~~~al~s~~p~~~pfd~~~v~~t~Y~i~~~Qp~YFvi~sf~~L~~~ 244 (275)
T PRK11913 165 FLARLYWFTVEFGLIRTPGGLRIYGAGILSSPGETLYALESDSPNRRPFDLERVMRTPYRIDIFQPTYFVIDSFEQLFDI 244 (275)
T ss_pred HHhhheeeeecccccccCCceeEeechhhcCHHHHHHHhcCCCCeeecCCHHHHhCCCCCCCCcCCceEEeCCHHHHHHH
Confidence 799999999999999999999999999999999999999 8899999999999999999999999999999999999987
Q ss_pred cc
Q psy14594 82 MM 83 (125)
Q Consensus 82 lr 83 (125)
+.
T Consensus 245 ~~ 246 (275)
T PRK11913 245 AE 246 (275)
T ss_pred HH
Confidence 65
No 13
>PRK14055 aromatic amino acid hydroxylase; Provisional
Probab=100.00 E-value=2.7e-37 Score=260.15 Aligned_cols=80 Identities=29% Similarity=0.409 Sum_probs=77.3
Q ss_pred cceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhhcc
Q psy14594 3 EWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDKM 82 (125)
Q Consensus 3 ~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~~l 82 (125)
.|+||||||||||||+++|++||||||||||+||+.||++++++++||||+++++|+|+||+|||+|||++||++|.+.+
T Consensus 251 ~LaRLYWFTVEFGLI~e~g~lKiYGAGILSS~GEl~~aL~~~~~r~pFD~~~v~rTpY~Id~~Qp~YFVieSfe~L~e~~ 330 (362)
T PRK14055 251 AIVRCFWFTVESGLIENHEGRKAYGAVLISSPQELGHAFIDNVRVLPLELDQIIRLPFNTSTPQETLFSIRHFDELVELT 330 (362)
T ss_pred HhhheeeeeeeeeeeccCCceeEecceeccChHHHHHHhcCCCCcCCCCHHHHhcCCCCCCCCCCceEEeCCHHHHHHHH
Confidence 58999999999999999999999999999999999999999988999999999999999999999999999999998754
No 14
>PRK14056 phenylalanine 4-monooxygenase; Provisional
Probab=100.00 E-value=1.4e-35 Score=261.47 Aligned_cols=82 Identities=39% Similarity=0.669 Sum_probs=80.3
Q ss_pred ccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhhc
Q psy14594 2 VEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDK 81 (125)
Q Consensus 2 ~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~~ 81 (125)
++|+||||||||||||+++|++||||||||||+||++||+++.|+++||||+.+++|+|+||+|||+|||++||++|.+.
T Consensus 201 ~~LaRLyWfTVEFGLI~e~~~lKiYGAGLLSS~GE~~~~lsd~~~k~pfd~~~v~~t~Y~It~~Qp~yFV~~sfe~L~~~ 280 (578)
T PRK14056 201 EQISRLFWWTVEYGLIGTLDNPKIYGAGLLSSVGESKHCLTDAVEKVPFSIEACTSTTYDITKMQPQLFVCPDFEELSEV 280 (578)
T ss_pred HHHhheeeeeeeeeeeccCCceeEecceeecCHHHHHHhccCCCccCCCCHHHHhCCCCCCCCcCCceEEeCCHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy14594 82 MM 83 (125)
Q Consensus 82 lr 83 (125)
++
T Consensus 281 l~ 282 (578)
T PRK14056 281 LE 282 (578)
T ss_pred HH
Confidence 88
No 15
>COG3186 Phenylalanine-4-hydroxylase [Amino acid transport and metabolism]
Probab=99.97 E-value=5.2e-33 Score=227.77 Aligned_cols=81 Identities=44% Similarity=0.758 Sum_probs=77.7
Q ss_pred cceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhh-CCCCccccCChhhhccccCCCCcccceeEEecChHHHhhc
Q psy14594 3 EWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDK 81 (125)
Q Consensus 3 ~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~al-s~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~~ 81 (125)
.|+|||||||||||+++++++|||||||+||++|+.||+ +++|++.|||++++|+++|+|+++||+|||++||++|.+.
T Consensus 180 ~laRlyW~TvEfGLv~~~~g~kiYGagi~SSp~E~~~A~~~~~p~~~pfdl~~vmRtpyrid~~Q~~yFvi~~f~~L~el 259 (291)
T COG3186 180 MLARLYWYTVEFGLVETPGGLKIYGAGILSSPTELVYALESDSPNRIPFDLEQVMRTPYRIDTFQPTYFVIPSFDQLFEL 259 (291)
T ss_pred HHHHHHHhhhhhceeeccccceeecceeecCchhhhhhhcCCCcccCCcCHHHHhhcccccCcccceeEeccCHHHHHHH
Confidence 689999999999999999999999999999999999995 8999999999999999999999999999999999999886
Q ss_pred cc
Q psy14594 82 MM 83 (125)
Q Consensus 82 lr 83 (125)
..
T Consensus 260 tq 261 (291)
T COG3186 260 TQ 261 (291)
T ss_pred HH
Confidence 43
No 16
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=56.29 E-value=4.8 Score=27.43 Aligned_cols=47 Identities=36% Similarity=0.498 Sum_probs=23.7
Q ss_pred eCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecCh
Q psy14594 19 QEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESF 75 (125)
Q Consensus 19 e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSf 75 (125)
++.+.|+=|+|+ .|-+|.-|.+..|-=-+- -|+=-.=||.|||++.|
T Consensus 20 ~~~g~~IDg~Gl-------TykVs~lPd~srf~N~rF---~~eri~gqpl~y~s~~f 66 (67)
T PF12218_consen 20 SPVGRKIDGAGL-------TYKVSSLPDISRFKNARF---VYERIPGQPLYYVSEGF 66 (67)
T ss_dssp S-TTS-EE-TT--------EEEESS---GGGEES-EE---EE-SSTT--EEEE-BTS
T ss_pred cCCCeEEecCCc-------eEEEeeCccHHhhccceE---EEeecCCCceEeeeccc
Confidence 567788899998 677777776655532222 23445579999999987
No 17
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=49.36 E-value=25 Score=23.75 Aligned_cols=30 Identities=17% Similarity=0.510 Sum_probs=25.1
Q ss_pred eecCccceEEe---------eCChhHHHHHHHHHHHHHH
Q psy14594 87 RYNPYTQSVDV---------IDSKVQLSELVQNINGEMQ 116 (125)
Q Consensus 87 ~Yd~~t~si~~---------~~~~~~~~~~~~~~~~~l~ 116 (125)
.|||.|..++. +.+...+.+++.+|+.|++
T Consensus 31 l~d~~sg~~~l~vtGI~~~~l~s~rdI~~LI~eLr~el~ 69 (69)
T PF07865_consen 31 LFDPASGRVELTVTGISTSALNSSRDIVRLIAELRAELD 69 (69)
T ss_pred EecCCCCcEEEEEcCcCHHHcCCHHHHHHHHHHHHHhcC
Confidence 47888888854 7889999999999999873
No 18
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=47.91 E-value=49 Score=21.31 Aligned_cols=40 Identities=25% Similarity=0.435 Sum_probs=33.1
Q ss_pred cChHHHhhccc---------eeeeecCccceEEeeCChhHHHHHHHHHH
Q psy14594 73 ESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNIN 112 (125)
Q Consensus 73 eSfe~l~~~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~ 112 (125)
-||+++.+++. |.+.|-..-...-.+.+.+.+..+++..+
T Consensus 21 ~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 21 ISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred CCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHHHHHHHHHHH
Confidence 47899988876 88899877777778899999999988775
No 19
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=40.67 E-value=61 Score=22.68 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=34.8
Q ss_pred cChHHHhhccc----------eeeeecCccceEEeeCChhHHHHHHHHH
Q psy14594 73 ESFEDAKDKMM----------FGVRYNPYTQSVDVIDSKVQLSELVQNI 111 (125)
Q Consensus 73 eSfe~l~~~lr----------F~~~Yd~~t~si~~~~~~~~~~~~~~~~ 111 (125)
-+|++|.+|++ |.++|-=.....-.+++-..+..+++..
T Consensus 25 ~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~ 73 (91)
T cd06398 25 LNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYF 73 (91)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHH
Confidence 48999999887 8889988899999999999999999875
No 20
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=37.93 E-value=5.7 Score=26.27 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=34.3
Q ss_pred eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHHhhcC
Q psy14594 84 FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI 125 (125)
Q Consensus 84 F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~al~k~ 125 (125)
=...|+.|++=|.+.+...++.+-+..|++.++.+...++++
T Consensus 43 r~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 43 RKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888888888888888888888888888877653
No 21
>PF10213 MRP-S28: Mitochondrial ribosomal subunit protein ; InterPro: IPR019349 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a conserved region of approx. 125 residues of one of the proteins that makes up the small subunit of the mitochondrial ribosome. In Saccharomyces cerevisiae (Baker's yeast) it is mitochondrial ribosomal protein S24 whereas in humans it is S35.
Probab=35.74 E-value=45 Score=24.76 Aligned_cols=40 Identities=30% Similarity=0.438 Sum_probs=27.0
Q ss_pred Hhhccc--eeeeecCccceEEeeCC--------hhHHHHHHHHHHHHHHH
Q psy14594 78 AKDKMM--FGVRYNPYTQSVDVIDS--------KVQLSELVQNINGEMQI 117 (125)
Q Consensus 78 l~~~lr--F~~~Yd~~t~si~~~~~--------~~~~~~~~~~~~~~l~~ 117 (125)
+++++. =+.||||.|+.|.+..+ .+-+..+++.|-+|-..
T Consensus 44 a~~Kl~~LaG~Ryd~~~d~l~i~sdr~~~~~qN~~~l~~~l~~L~~EA~~ 93 (127)
T PF10213_consen 44 ARHKLKLLAGPRYDPETDILKISSDRFPTRAQNKKYLSDLLTRLIHEAKD 93 (127)
T ss_pred HHHHHHHHhhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 355555 78999999999998654 44555555555555443
No 22
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=34.62 E-value=43 Score=28.89 Aligned_cols=65 Identities=26% Similarity=0.302 Sum_probs=42.4
Q ss_pred CHhhhhhhhCCCCccccCChhhhccccC-CCCc----ccceeEEec---ChHHHhhccc--------------eeeeecC
Q psy14594 33 SFGELQYCLSDKPQRKPFEPSVTALQTY-PITE----YQPLYFVAE---SFEDAKDKMM--------------FGVRYNP 90 (125)
Q Consensus 33 S~gEl~~als~~~~~~pfdp~~~~~~~y-~i~~----~Qp~YFv~e---Sfe~l~~~lr--------------F~~~Yd~ 90 (125)
|+..++...+.++.++=|.|-++.+.+. +-++ .|=--.+++ ||.||+..+. |.+.|-|
T Consensus 172 Sp~qir~L~~~~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg~~~~~R~rpsyFP 251 (339)
T PRK00488 172 SPVQIRTMEKQKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFGEDVKIRFRPSYFP 251 (339)
T ss_pred cHHHHHHHHhcCCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcCCCCeEEecCCCCC
Confidence 4555554445667778899999988776 3344 344445554 6777766544 8888999
Q ss_pred ccc-eEEe
Q psy14594 91 YTQ-SVDV 97 (125)
Q Consensus 91 ~t~-si~~ 97 (125)
+|+ |+||
T Consensus 252 FTePS~Ev 259 (339)
T PRK00488 252 FTEPSAEV 259 (339)
T ss_pred CCCCceEE
Confidence 985 5544
No 23
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=34.38 E-value=1e+02 Score=19.55 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=32.2
Q ss_pred cChHHHhhccc---------eeeeecCccceEEeeCChhHHHHHHHHHHH
Q psy14594 73 ESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNING 113 (125)
Q Consensus 73 eSfe~l~~~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~ 113 (125)
.||+++.++++ |.+.|--.-...-.+.+.+.+..+++..+.
T Consensus 21 ~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~~ 70 (81)
T cd05992 21 ISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDEDLEEAIEEARR 70 (81)
T ss_pred CCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCHHHHHHHHHHHhh
Confidence 48999988876 677776666677778888999999888764
No 24
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=33.37 E-value=33 Score=23.94 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=13.0
Q ss_pred eeeeecCccceEEee
Q psy14594 84 FGVRYNPYTQSVDVI 98 (125)
Q Consensus 84 F~~~Yd~~t~si~~~ 98 (125)
=-++|||.|++++|+
T Consensus 38 Rll~ydp~t~~~~vl 52 (89)
T PF03088_consen 38 RLLRYDPSTKETTVL 52 (89)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred CEEEEECCCCeEEEe
Confidence 668999999999875
No 25
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=33.28 E-value=74 Score=27.16 Aligned_cols=62 Identities=23% Similarity=0.173 Sum_probs=35.7
Q ss_pred cce-ecCHhhhhhhhC-CC-Ccc-ccCChhhhccccCCCCc-cc------ceeEEecChHHHhhc--c--------ceee
Q psy14594 28 AGL-LSSFGELQYCLS-DK-PQR-KPFEPSVTALQTYPITE-YQ------PLYFVAESFEDAKDK--M--------MFGV 86 (125)
Q Consensus 28 AGl-LSS~gEl~~als-~~-~~~-~pfdp~~~~~~~y~i~~-~Q------p~YFv~eSfe~l~~~--l--------rF~~ 86 (125)
+|+ .+|.||++.++. +- ++. .-+.+ +++.=.+.. .+ .+.+++||++|+... + +..+
T Consensus 66 ~g~DvaS~~El~~al~~G~~~~~ii~~~g---~K~~~~l~~a~~~~~~g~~v~i~vDs~~EL~~l~~~a~~~~~~~~v~l 142 (409)
T cd06830 66 IGLEAGSKPELLAALALLKTPDALIICNG---YKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGVKPLLGV 142 (409)
T ss_pred eeEEeCCHHHHHHHHhcCCCCCCEEEECC---cCCHHHHHHHHhcCcCCceEEEEECCHHHHHHHHHHHHHcCCCceEEE
Confidence 887 789999999985 32 222 22222 111111111 11 357899999998442 2 2777
Q ss_pred eecCcc
Q psy14594 87 RYNPYT 92 (125)
Q Consensus 87 ~Yd~~t 92 (125)
|.||..
T Consensus 143 Rinp~~ 148 (409)
T cd06830 143 RIKLAS 148 (409)
T ss_pred EEccCC
Confidence 888863
No 26
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=32.62 E-value=68 Score=22.60 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=28.5
Q ss_pred ChHHHhhccc--------eeeeecCccceEEeeCChhHHHHHHHHHHHH
Q psy14594 74 SFEDAKDKMM--------FGVRYNPYTQSVDVIDSKVQLSELVQNINGE 114 (125)
Q Consensus 74 Sfe~l~~~lr--------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~ 114 (125)
+|+|+.+++| |.++|--. ..--.+.+...|..++..-+..
T Consensus 23 ~f~dL~~kIrdkf~~~~~~~iKykDE-GD~iti~sq~DLd~Ai~~a~~~ 70 (86)
T cd06408 23 GFADFEDKIRDKFGFKRRLKIKMKDD-GDMITMGDQDDLDMAIDTARSE 70 (86)
T ss_pred CHHHHHHHHHHHhCCCCceEEEEEcC-CCCccccCHHHHHHHHHHHHHH
Confidence 5889988888 67777555 4444567778888888777653
No 27
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=32.13 E-value=91 Score=19.97 Aligned_cols=41 Identities=24% Similarity=0.426 Sum_probs=32.3
Q ss_pred cChHHHhhccc---------eeeeecCccceEEeeCChhHHHHHHHHHHH
Q psy14594 73 ESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNING 113 (125)
Q Consensus 73 eSfe~l~~~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~ 113 (125)
.||+++.++++ |.+.|--.-...-.+.+.+.+..+++..+.
T Consensus 22 ~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 22 VSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKE 71 (84)
T ss_dssp SHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHh
Confidence 37888877776 888887777777778889999999887764
No 28
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=29.64 E-value=52 Score=29.89 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=37.8
Q ss_pred CCccccCChhhhccccCCCCccccee-----EEec---ChHHHhhccc------------eeeeecCccc-eEEe
Q psy14594 44 KPQRKPFEPSVTALQTYPITEYQPLY-----FVAE---SFEDAKDKMM------------FGVRYNPYTQ-SVDV 97 (125)
Q Consensus 44 ~~~~~pfdp~~~~~~~y~i~~~Qp~Y-----Fv~e---Sfe~l~~~lr------------F~~~Yd~~t~-si~~ 97 (125)
.|+.+-|-|.++.+.+-.+.+.=|.+ .|++ ||.+|+..++ |.+.|.|||+ |+|+
T Consensus 340 ~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~~~lg~~~~RfrP~yfPfTEPS~Ei 414 (492)
T PLN02853 340 FKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGLTLGDLIGVLEDFFSRLGMTKLRFKPAYNPYTEPSMEI 414 (492)
T ss_pred CCCcEEEeccceecCCCCCcccCccceeEEEEEEeCCCCHHHHHHHHHHHHHHcCCceEEEecCCCCCCCCeEEE
Confidence 36778888998888877555544544 4554 7787755433 9999999986 5654
No 29
>PF09741 DUF2045: Uncharacterized conserved protein (DUF2045); InterPro: IPR019141 This entry is the conserved 250 residues of proteins of approximately 450 amino acids. It contains several highly conserved motifs including a CVxLxxxD motif. The function is unknown.
Probab=28.92 E-value=50 Score=27.35 Aligned_cols=62 Identities=16% Similarity=0.426 Sum_probs=38.2
Q ss_pred eEEEEEEEeeeCCceEEeecceecCH---hhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhhccc
Q psy14594 9 WFTVEFGLCRQEGQLKAFGAGLLSSF---GELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDKMM 83 (125)
Q Consensus 9 WfTVEFGL~~e~~~lkayGAGlLSS~---gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~~lr 83 (125)
=||+-...|...+.-- |+.. ....| ..|-+++.|..... .-.+|=.+||.+|+||++.+.+-
T Consensus 87 ~y~lTvAvC~~~~~~~------l~~~~k~~~~Vy---ASPsr~~md~k~~~----e~~~YP~i~F~vD~Fde~F~~~~ 151 (237)
T PF09741_consen 87 SYTLTVAVCTRTSPQN------LQIIKKVSQRVY---ASPSRRRMDSKGEG----EEITYPNICFTVDDFDEVFDDVV 151 (237)
T ss_pred cEEEEEEEEcCcCCCc------eeeEEeeeeEEe---cCCccccccccccc----cccccCeEEEEecChhhhhheEE
Confidence 4777888886442211 2221 11122 34555666665433 33488899999999999999765
No 30
>PF07833 Cu_amine_oxidN1: Copper amine oxidase N-terminal domain; InterPro: IPR012854 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents a domain found at the N-terminal of certain copper amine oxidases, as well as in related proteins such as cell wall hydrolase and N-acetylmuramoyl-L-alanine amidase. This domain consists of a five-stranded antiparallel beta-sheet twisted around an alpha helix [, ]. ; PDB: 1SPU_A 2WGQ_A 2WO0_A 1JRQ_A 1QAF_B 1D6U_B 1QAL_A 2WOF_A 1OAC_B 1QAK_A ....
Probab=25.40 E-value=74 Score=20.43 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=20.5
Q ss_pred hHHHhhccceeeeecCccceEEeeCCh
Q psy14594 75 FEDAKDKMMFGVRYNPYTQSVDVIDSK 101 (125)
Q Consensus 75 fe~l~~~lrF~~~Yd~~t~si~~~~~~ 101 (125)
+..+.+.+.+.+.||+.++++.+-.+.
T Consensus 9 l~~i~~~lg~~v~~d~~~~~v~i~~~~ 35 (93)
T PF07833_consen 9 LRFIAEALGAKVSWDNKTKTVTITKGK 35 (93)
T ss_dssp HHHHHHHHT-EEEEETTTTEEEEEETT
T ss_pred HHHHHHHcCCEEEEEcCCcEEEEEeee
Confidence 456677778999999999999886543
No 31
>TIGR03512 GldD_lipo gliding motility-associated lipoprotein GldD. Members of this protein family are found a number of Bacteriodetes lineage bacteria, including both species such as Flavobacterium johnsoniae, which possess a poorly understood form of rapid gliding motility, and other species which apparently do not. Mutation of GldD blocks both this motility and chitin utilization in the model species, Flavobacterium johnsoniae.
Probab=22.18 E-value=1.1e+02 Score=24.66 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=36.5
Q ss_pred CcccceeEEecChHHHhhc-cceeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHHhh
Q psy14594 63 TEYQPLYFVAESFEDAKDK-MMFGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLK 123 (125)
Q Consensus 63 ~~~Qp~YFv~eSfe~l~~~-lrF~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~al~ 123 (125)
..-|-++|+.||-.+-..- +-|. .-.+.++|.-+++=||+||.+|-+.++
T Consensus 134 aASq~QFy~TDSt~HFl~GaLYF~-----------~~Pn~DSi~Pa~~Yik~Di~~lmeTl~ 184 (186)
T TIGR03512 134 AASQIQFYVTDSTKHFLRGSVYFR-----------TSPNFDSIAPAASYMKEDVMHLMETLK 184 (186)
T ss_pred CCccceEEEeccccceeeeeEEEc-----------cCCCccchhHHHHHHHHHHHHHHHhcc
Confidence 4468899999996653321 1133 346788999999999999999987764
No 32
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=22.11 E-value=41 Score=31.81 Aligned_cols=70 Identities=21% Similarity=0.275 Sum_probs=39.5
Q ss_pred eEEeecce-ecCHhhhhhhhCC----CCccccCChhhhccccCCCCcccceeEEecChHHHhhccc------eeeeecCc
Q psy14594 23 LKAFGAGL-LSSFGELQYCLSD----KPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDKMM------FGVRYNPY 91 (125)
Q Consensus 23 lkayGAGl-LSS~gEl~~als~----~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~~lr------F~~~Yd~~ 91 (125)
++..|+|+ .+|.+|++.++.- .|+..-|..-.--...+.----.-+...+||++|+..-.+ ..+|.||.
T Consensus 545 l~~~G~g~dvaS~~El~~al~~~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv~i~vDS~~EL~~i~~~~~~~~v~lRinp~ 624 (861)
T PRK08961 545 LEEEGFGFECVSIGELRRVFELFPELSPERVLFTPNFAPRAEYEAAFALGVTVTLDNVEPLRNWPELFRGREVWLRIDPG 624 (861)
T ss_pred HHHcCCeEEEcCHHHHHHHHHhcCCCCCCeEEECCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHhCCCCcEEEEECCC
Confidence 34567887 7899999999852 2333333221100011110011234578999999865322 77888886
Q ss_pred c
Q psy14594 92 T 92 (125)
Q Consensus 92 t 92 (125)
.
T Consensus 625 ~ 625 (861)
T PRK08961 625 H 625 (861)
T ss_pred C
Confidence 3
No 33
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=21.95 E-value=53 Score=23.68 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=5.8
Q ss_pred eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHH
Q psy14594 84 FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTS 121 (125)
Q Consensus 84 F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~a 121 (125)
..+.=+-|..=|....+.....+.+++|+.+|..+...
T Consensus 47 i~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~ 84 (133)
T PF06148_consen 47 IELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREE 84 (133)
T ss_dssp ---------------------------HHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555666666665554443
No 34
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=21.71 E-value=97 Score=21.74 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=41.1
Q ss_pred CCCccccCChhhhccccCCCCcccceeEEecChHHHhhccc----------eeeeecCccceEEeeCChhHHHHHHHHHH
Q psy14594 43 DKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKDKMM----------FGVRYNPYTQSVDVIDSKVQLSELVQNIN 112 (125)
Q Consensus 43 ~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~~lr----------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~ 112 (125)
++++++.|-+..-. .-||+++.++++ |.+.|-=.-+-.-.+.+...+..|++.++
T Consensus 12 ~~~EIRRf~l~~~~---------------~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 12 ANAEIRRFAIDEDV---------------STSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN 76 (87)
T ss_pred CccceEEEEecCCC---------------CcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence 56778887665432 246788888777 88888777777777888999999888765
No 35
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.22 E-value=1.1e+02 Score=20.06 Aligned_cols=26 Identities=15% Similarity=0.251 Sum_probs=18.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhcC
Q psy14594 100 SKVQLSELVQNINGEMQILLTSLKKI 125 (125)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~l~~al~k~ 125 (125)
+..++...++.+|.+...|...+++|
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778888887777777653
No 36
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=20.96 E-value=1.7e+02 Score=18.95 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=17.0
Q ss_pred cccceeEEecChHHHhhccc
Q psy14594 64 EYQPLYFVAESFEDAKDKMM 83 (125)
Q Consensus 64 ~~Qp~YFv~eSfe~l~~~lr 83 (125)
..+-.+|.++|++++.+++.
T Consensus 70 ~~~~i~~~v~did~~~~~l~ 89 (121)
T cd07233 70 GFGHLAFAVDDVYAACERLE 89 (121)
T ss_pred CeEEEEEEeCCHHHHHHHHH
Confidence 45668999999999998887
No 37
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=20.62 E-value=42 Score=26.25 Aligned_cols=61 Identities=26% Similarity=0.337 Sum_probs=35.0
Q ss_pred eecce-ecCHhhhhhhhCCCCccccCChhhhc-cccCC----C---CcccceeEEecChHHHhhccc------eeeeecC
Q psy14594 26 FGAGL-LSSFGELQYCLSDKPQRKPFEPSVTA-LQTYP----I---TEYQPLYFVAESFEDAKDKMM------FGVRYNP 90 (125)
Q Consensus 26 yGAGl-LSS~gEl~~als~~~~~~pfdp~~~~-~~~y~----i---~~~Qp~YFv~eSfe~l~~~lr------F~~~Yd~ 90 (125)
.|.|+ .+|.+|++.|+.- -|+|++++ .-|.. | -...-..+++||.+|+....+ ..+|.||
T Consensus 42 ~g~g~dv~S~~El~~a~~~-----g~~~~~Ii~~gp~k~~~~l~~a~~~~~~~i~vDs~~el~~l~~~~~~~~v~lRin~ 116 (251)
T PF02784_consen 42 EGCGFDVASPGELELALKA-----GFPPDRIIFTGPGKSDEELEEAIENGVATINVDSLEELERLAELAPEARVGLRINP 116 (251)
T ss_dssp TTCEEEESSHHHHHHHHHT-----TTTGGGEEEECSS--HHHHHHHHHHTESEEEESSHHHHHHHHHHHCTHEEEEEBE-
T ss_pred cCCceEEecccchHHHHhh-----hccccceeEecCcccHHHHHHHHhCCceEEEeCCHHHHHHHhccCCCceeeEEEee
Confidence 35555 7899999999752 23333333 11111 1 111456899999999864322 5666666
Q ss_pred c
Q psy14594 91 Y 91 (125)
Q Consensus 91 ~ 91 (125)
-
T Consensus 117 ~ 117 (251)
T PF02784_consen 117 G 117 (251)
T ss_dssp S
T ss_pred c
Confidence 5
No 38
>PF04491 Pox_T4_N: Poxvirus T4 protein, N terminus; InterPro: IPR007580 Poxvirus T4 protein is thought to be secreted or retained in the endoplasmic reticulum if the protein also contains an additional C-terminal region (IPR007579 from INTERPRO). M-T4 of myxoma virus (O55698 from SWISSPROT) is thought to protect infected lymphocytes from apoptosis and modulate the inflammatory response to virus infection [].
Probab=20.55 E-value=74 Score=20.26 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=7.5
Q ss_pred EEeeeCCceEEe
Q psy14594 15 GLCRQEGQLKAF 26 (125)
Q Consensus 15 GL~~e~~~lkay 26 (125)
|||.|.++.|+|
T Consensus 30 GLItegNGfki~ 41 (46)
T PF04491_consen 30 GLITEGNGFKIF 41 (46)
T ss_pred cEEeeCCcEEEE
Confidence 566666666655
No 39
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors. The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
Probab=20.43 E-value=69 Score=22.24 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=21.6
Q ss_pred cceeeeecCccceEEeeCChhHHHHHHH
Q psy14594 82 MMFGVRYNPYTQSVDVIDSKVQLSELVQ 109 (125)
Q Consensus 82 lrF~~~Yd~~t~si~~~~~~~~~~~~~~ 109 (125)
..|.|.|+|-+..-|.+=...+..++++
T Consensus 9 ~~F~V~Y~PRa~~sEFVV~~~k~~~al~ 36 (83)
T PF06507_consen 9 SPFEVFYYPRASPSEFVVPASKYDKALN 36 (83)
T ss_pred CeEEEEECCCCCCcceEEEHHHHHHHhc
Confidence 3499999999988887777777766654
No 40
>PRK05354 arginine decarboxylase; Provisional
Probab=20.39 E-value=1.3e+02 Score=27.94 Aligned_cols=62 Identities=26% Similarity=0.303 Sum_probs=37.4
Q ss_pred cce-ecCHhhhhhhhCCCCccccCChhhhccccCCCCcc----------c-ceeEEecChHHHhhccc----------ee
Q psy14594 28 AGL-LSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEY----------Q-PLYFVAESFEDAKDKMM----------FG 85 (125)
Q Consensus 28 AGl-LSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~----------Q-p~YFv~eSfe~l~~~lr----------F~ 85 (125)
.|+ .+|.+|+.-|+.-.+. | +.-.+++ .|....+ - .+++++||++|+..-.+ ..
T Consensus 125 ~GlEv~S~~EL~~AL~~g~~--~-~~lIi~N-G~Kd~e~I~~Al~~~~lG~~v~ivIDs~~EL~~I~~~a~~~~~~p~Ig 200 (634)
T PRK05354 125 LGLEAGSKPELMAVLALAGD--P-GALIVCN-GYKDREYIRLALIGRKLGHKVFIVIEKLSELELILEEAKELGVKPRLG 200 (634)
T ss_pred eeEEECCHHHHHHHHHcCCC--C-CcEEEcC-CCCCHHHHHHHHHhHhcCCCEEEEECCHHHHHHHHHHHHhcCCCCeEE
Confidence 455 7899999999963221 0 1111222 2433221 1 47999999999865333 67
Q ss_pred eeecCccc
Q psy14594 86 VRYNPYTQ 93 (125)
Q Consensus 86 ~~Yd~~t~ 93 (125)
+|.+|.+.
T Consensus 201 lRi~~~~~ 208 (634)
T PRK05354 201 VRARLASQ 208 (634)
T ss_pred EEEecCCC
Confidence 88888643
No 41
>PF12447 DUF3683: Protein of unknown function (DUF3683); InterPro: IPR022153 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF02754 from PFAM, PF01565 from PFAM, PF02913 from PFAM.
Probab=20.26 E-value=1.2e+02 Score=22.63 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=31.9
Q ss_pred eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHH
Q psy14594 84 FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTS 121 (125)
Q Consensus 84 F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~a 121 (125)
+-++=|||-+- +.+|+++..+.++..+.|+|+.+..-
T Consensus 56 wvv~RNPyL~d-dLld~~~Rr~~L~~al~hrL~~I~~r 92 (115)
T PF12447_consen 56 WVVRRNPYLQD-DLLDNPKRRRALFEALRHRLDEIEKR 92 (115)
T ss_pred eeeecCchhHH-HHccCHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999654 57899999999999999999888653
Done!