Query psy14594
Match_columns 125
No_of_seqs 106 out of 461
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 23:53:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14594.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14594hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1toh_A Tyroh, tyrosine hydroxy 100.0 2.1E-54 7.2E-59 361.9 5.6 125 1-125 209-342 (343)
2 1j8u_A Phenylalanine-4-hydroxy 100.0 4E-48 1.4E-52 322.2 1.5 101 1-101 216-325 (325)
3 1phz_A Protein (phenylalanine 100.0 3.9E-47 1.3E-51 325.6 2.0 103 1-103 318-429 (429)
4 1mlw_A Tryptophan 5-monooxygen 100.0 1.1E-42 3.7E-47 287.4 -0.3 89 1-89 204-301 (301)
5 2v27_A Phenylalanine hydroxyla 100.0 3E-40 1E-44 270.1 -0.5 83 1-83 155-238 (275)
6 3tk2_A Phenylalanine-4-hydroxy 100.0 1.7E-38 5.8E-43 262.5 -2.8 89 2-90 178-269 (302)
7 4hce_A Cell division control p 49.6 12 0.0004 28.1 2.9 63 59-123 20-94 (152)
8 1go4_E MAD1 (mitotic arrest de 31.7 92 0.0032 21.5 5.0 40 86-125 49-94 (100)
9 3nfg_A DNA-directed RNA polyme 30.2 38 0.0013 23.5 2.9 33 67-99 57-90 (102)
10 3k2t_A LMO2511 protein; lister 29.5 40 0.0014 20.9 2.6 26 73-98 13-43 (57)
11 1vd2_A Protein kinase C, IOTA 28.4 59 0.002 21.8 3.5 37 74-110 27-73 (89)
12 2y9k_A Protein INVG; protein t 28.1 82 0.0028 21.7 4.4 26 84-109 103-128 (137)
13 3ka5_A Ribosome-associated pro 27.9 46 0.0016 21.3 2.7 26 73-98 13-43 (65)
14 2ktr_A Sequestosome-1; autopha 26.7 64 0.0022 22.9 3.6 41 72-112 56-106 (117)
15 3gr5_A ESCC; secretin, type II 25.6 87 0.003 22.4 4.2 27 84-110 118-145 (156)
16 2kkc_A Sequestosome-1; P62, PB 24.7 68 0.0023 22.0 3.3 40 73-112 42-91 (102)
17 3lyv_A Ribosome-associated fac 23.5 51 0.0018 21.1 2.3 26 73-98 14-44 (66)
18 1txp_A HnRNP C, heterogeneous 23.2 1E+02 0.0035 16.9 3.4 24 102-125 2-25 (28)
19 3nff_A RNA polymerase I subuni 20.8 57 0.002 23.4 2.4 34 67-100 57-91 (122)
No 1
>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, P substrate; 2.30A {Rattus norvegicus} SCOP: d.178.1.1 PDB: 2toh_A* 2xsn_A
Probab=100.00 E-value=2.1e-54 Score=361.93 Aligned_cols=125 Identities=49% Similarity=0.928 Sum_probs=122.7
Q ss_pred CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD 80 (125)
Q Consensus 1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~ 80 (125)
+++|+||||||||||||+++|++||||||||||+||++||++++|+++||||+.+++|+|+|++|||+|||++||++|++
T Consensus 209 i~~LarlYWfTVEFGLi~e~g~lKaYGAGlLSS~GEl~~als~~p~~~pfd~~~~~~t~Y~I~~~Qp~YFV~eSfe~l~e 288 (343)
T 1toh_A 209 IEKLSTVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEEPEVRAFDPDTAAVQPYQDQTYQPVYFVSESFNDAKD 288 (343)
T ss_dssp HHHHHHHHHTTTTTCEEEETTEEEECCHHHHTCHHHHHHHTSSSSEEEECCHHHHHTCCCCSSSCCSEEEEESCHHHHHH
T ss_pred HHHHhhheeeeeecceeccCCceEEecccccCchHHHHHHcCCCCcccCCCHHHHcCCCCCCCCCccceEEeCCHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc---------eeeeecCccceEEeeCChhHHHHHHHHHHHHHHHHHHHhhcC
Q psy14594 81 KMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTSLKKI 125 (125)
Q Consensus 81 ~lr---------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~~~l~~l~~al~k~ 125 (125)
+|+ |.++|||||+||+|+|++++++++++++++|++.|++||+||
T Consensus 289 ~l~~fa~~~~rpf~~~y~p~t~~i~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~ 342 (343)
T 1toh_A 289 KLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTIQRSLEGVQDELHTLAHALSAI 342 (343)
T ss_dssp HHHHHHHTSCCSCEEEEETTTTEEEEECSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCceeeeCCCcceEEecCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 998 999999999999999999999999999999999999999987
No 2
>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate facial triad, tetrahydrobiopterin, oxidoreductase; HET: H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A* 1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 4anp_A* 2pah_A 1pah_A 3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A*
Probab=100.00 E-value=4e-48 Score=322.22 Aligned_cols=101 Identities=61% Similarity=1.130 Sum_probs=96.2
Q ss_pred CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD 80 (125)
Q Consensus 1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~ 80 (125)
+++|+||||||||||||+++|++||||||||||+||++||++++|+++||||+.+++|+|+|++|||+|||++||++|++
T Consensus 216 i~~LarlYWfTVEFGLi~e~g~lkaYGAGlLSS~GEl~~als~~p~~~pfd~~~~~~t~Y~I~~~Qp~YFV~~Sfe~l~~ 295 (325)
T 1j8u_A 216 IEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKE 295 (325)
T ss_dssp HHHHHHHHHHTTTTCEEEETTEEEECCHHHHTCHHHHHHHTSSSSEEEECCHHHHTTCCCCSSSCCSEEEEESCHHHHHH
T ss_pred HHHHhhheeeeeeeeeeccCCceEEecceeecChhHHHHhcCCCCeeccCCHHHHcCCCCCCCCcccceEEeCCHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc---------eeeeecCccceEEeeCCh
Q psy14594 81 KMM---------FGVRYNPYTQSVDVIDSK 101 (125)
Q Consensus 81 ~lr---------F~~~Yd~~t~si~~~~~~ 101 (125)
+|+ |.++|||||+||+|+|++
T Consensus 296 ~l~~fa~~~~rpf~~~y~~~t~~v~~~~~~ 325 (325)
T 1j8u_A 296 KVRNFAATIPRPFSVRYDPYTQRIEVLDNT 325 (325)
T ss_dssp HHHHHHTTSCCSSCEEEETTTTEEEEC---
T ss_pred HHHHHHHhCCCCceeeeCCCCceEEecCCC
Confidence 998 999999999999999874
No 3
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=100.00 E-value=3.9e-47 Score=325.63 Aligned_cols=103 Identities=62% Similarity=1.099 Sum_probs=98.9
Q ss_pred CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD 80 (125)
Q Consensus 1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~ 80 (125)
+++|+||||||||||||+++|++||||||||||+||++|||+++|+++||||+++++|+|+|++|||+|||++||++|++
T Consensus 318 i~~LarlyWfTVEFGLi~~~~~lk~YGAGlLSS~gE~~~~ls~~p~~~pfd~~~~~~~~y~i~~~Qp~yFv~~sf~~l~~ 397 (429)
T 1phz_A 318 IEKLATIYWFTVEFGLCKEGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTACQEYSVTEFQPLYYVAESFSDAKE 397 (429)
T ss_dssp HHHHHHHHHTTTTTCEEEETTEEEECCHHHHTCHHHHHHHTSSSSEEEECCHHHHTTCCCCSSSSCSEEEEESCHHHHHH
T ss_pred HHHHhhhheeeeeeceeccCCceeeeccccccChhHHHHhcCCCCeeccCCHHHHcCCCCCCCCcccceEEeCCHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc---------eeeeecCccceEEeeCChhH
Q psy14594 81 KMM---------FGVRYNPYTQSVDVIDSKVQ 103 (125)
Q Consensus 81 ~lr---------F~~~Yd~~t~si~~~~~~~~ 103 (125)
+|+ |.++|||||+||+|+|++++
T Consensus 398 ~~~~f~~~~~~pf~~~y~~~t~~~~~~~~~~~ 429 (429)
T 1phz_A 398 KVRTFAATIPRPFSVRYDPYTQRVEVLDNTQQ 429 (429)
T ss_dssp HHHHHHTTSCCSSEEEEETTTTEEEEECCC--
T ss_pred HHHHHHHhCCCCcceeeCCCccEEEecCCCCC
Confidence 998 99999999999999999764
No 4
>1mlw_A Tryptophan 5-monooxygenase; aromatic amino acid hydroxylase catalytic domain fold, oxidoreductase; HET: HBI; 1.71A {Homo sapiens} SCOP: d.178.1.1 PDB: 3hf6_A* 3hf8_A* 3hfb_A* 3e2t_A*
Probab=100.00 E-value=1.1e-42 Score=287.35 Aligned_cols=89 Identities=58% Similarity=1.035 Sum_probs=81.2
Q ss_pred CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhhCCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD 80 (125)
Q Consensus 1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~als~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~ 80 (125)
+++|+||||||||||||+++|++||||||||||+||++||+|++|+++||||+.+++|+|+|++|||+|||++||++|++
T Consensus 204 i~~LarlYWfTVEFGLi~e~~~lkaYGAGlLSS~gEl~~als~~p~~~pfd~~~~~~t~Y~I~~~Qp~YFV~~Sfe~l~~ 283 (301)
T 1mlw_A 204 VQKLATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAKVKPFDPKITCKQECLITTFQDVYFVSESFEDAKE 283 (301)
T ss_dssp HHHHHHHHHTTTTTCEEEETTEEEECCHHHHTCHHHHHHHTSTTSEEEECCHHHHTTSCCCSSSCCSEEEECSCHHHHHH
T ss_pred HHHHhhhheeeeecceeccCCceEEeccccccChHHHHHHcCCCCeecCCCHHHHcCCCCCCCCCccceEEECCHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc---------eeeeec
Q psy14594 81 KMM---------FGVRYN 89 (125)
Q Consensus 81 ~lr---------F~~~Yd 89 (125)
+|+ |+++||
T Consensus 284 ~~~~fa~~~~rpf~~~y~ 301 (301)
T 1mlw_A 284 KMREFTKTIKRPFGVKYN 301 (301)
T ss_dssp HHHHHHTTC---------
T ss_pred HHHHHHHhCCCCcceeCC
Confidence 998 999997
No 5
>2v27_A Phenylalanine hydroxylase; cold adaptation, tetrahydrobiopterin, stability, flexibility, alkaptonuria, oxidoreductase; 1.50A {Colwellia psychrerythraea 34H} PDB: 2v28_A
Probab=100.00 E-value=3e-40 Score=270.09 Aligned_cols=83 Identities=34% Similarity=0.598 Sum_probs=80.0
Q ss_pred CccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhh-CCCCccccCChhhhccccCCCCcccceeEEecChHHHh
Q psy14594 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAK 79 (125)
Q Consensus 1 ~~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~al-s~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~ 79 (125)
+++|+||||||||||||+++|++||||||||||+||++||+ +++|+++||||+++++|+|+|++|||+|||++||++|+
T Consensus 155 ~~~LarlYWfTVEFGLi~e~~~lkaYGAGiLSS~gEl~~al~s~~p~~~pfd~~~~~~t~Y~I~~~Qp~YFv~~sfe~l~ 234 (275)
T 2v27_A 155 RVFLARLYWFTIEFGLLDTPKGLRIYGGGVLSSPGETDYAMNNTDVDRKPFDILDVLRTPYRIDIMQPIYYMLTKVSDLD 234 (275)
T ss_dssp HHHHHHHHHHTTTTCEEEETTEEEECCHHHHTCHHHHHHHHHCSSCEEEECCHHHHHTCCCCTTSCCSEEEEESSGGGGH
T ss_pred HHHHhhhhheeeeeeeecCCCceEEeccchhcCHHHHHHHhcCCCCeeccCCHHHHhCCCCCCCCCCCCeEEeCCHHHHH
Confidence 35799999999999999999999999999999999999999 78999999999999999999999999999999999999
Q ss_pred hccc
Q psy14594 80 DKMM 83 (125)
Q Consensus 80 ~~lr 83 (125)
++++
T Consensus 235 ~~~~ 238 (275)
T 2v27_A 235 EIRK 238 (275)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9876
No 6
>3tk2_A Phenylalanine-4-hydroxylase; protein-substate complex, mixed alpha, beta, tetrahydrobiopterin, iron (II), molecular OX hydroxylation; HET: PHE; 1.35A {Chromobacterium violaceum} PDB: 3tk4_A 3tcy_A* 1ltz_A* 1ltv_A 1ltu_A*
Probab=100.00 E-value=1.7e-38 Score=262.49 Aligned_cols=89 Identities=37% Similarity=0.629 Sum_probs=83.7
Q ss_pred ccceeeeeEEEEEEEeeeCCceEEeecceecCHhhhhhhh-CCCCccccCChhhhccccCCCCcccceeEEecChHHHhh
Q psy14594 2 VEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQTYPITEYQPLYFVAESFEDAKD 80 (125)
Q Consensus 2 ~~LarlyWfTVEFGL~~e~~~lkayGAGlLSS~gEl~~al-s~~~~~~pfdp~~~~~~~y~i~~~Qp~YFv~eSfe~l~~ 80 (125)
++|+||||||||||||+++|++||||||||||+||+.||| +++|+++||||+++++|+|+|++|||+|||++||++|++
T Consensus 178 ~~LarlyWfTVEFGLi~~~~~~kiYGAGlLSS~gE~~~~l~s~~p~~~pfd~~~~~~~~y~i~~~Qp~yFv~~sfe~L~d 257 (302)
T 3tk2_A 178 PMLARLYWYTVEFGLINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTRYRIDTFQKTYFVIDSFKQLFD 257 (302)
T ss_dssp HHHHHHHHHTTTTCEECCTTCCEECCHHHHTCSSHHHHHHHCSSSEEEECCHHHHHTBCCCSSSCCSEEEEESCHHHHHH
T ss_pred HHhhheeEEEEEEEEEecCCceEEEeeeccCCHHHHHHHhcCCCCcccCCCHHHHhcCCCCcCCCCCCeEEeCCHHHHHH
Confidence 5799999999999999999999999999999999999999 688999999999999999999999999999999999999
Q ss_pred ccc--eeeeecC
Q psy14594 81 KMM--FGVRYNP 90 (125)
Q Consensus 81 ~lr--F~~~Yd~ 90 (125)
+++ |...|..
T Consensus 258 ~~~~df~~l~~~ 269 (302)
T 3tk2_A 258 ATAPDFAPLYLQ 269 (302)
T ss_dssp HTCSCCHHHHHH
T ss_pred HHHHhHHHHHHH
Confidence 887 6555544
No 7
>4hce_A Cell division control protein 13; OB fold, oligonucleotide/oligosaccharide binding fold; 2.30A {Saccharomyces cerevisiae}
Probab=49.56 E-value=12 Score=28.13 Aligned_cols=63 Identities=21% Similarity=0.266 Sum_probs=49.1
Q ss_pred cCCCCcccceeEEecChHHHhh-ccc--eeeeec--------CccceEE-eeCChhHHHHHHHHHHHHHHHHHHHhh
Q psy14594 59 TYPITEYQPLYFVAESFEDAKD-KMM--FGVRYN--------PYTQSVD-VIDSKVQLSELVQNINGEMQILLTSLK 123 (125)
Q Consensus 59 ~y~i~~~Qp~YFv~eSfe~l~~-~lr--F~~~Yd--------~~t~si~-~~~~~~~~~~~~~~~~~~l~~l~~al~ 123 (125)
+-.|-.+=|++| +|+++++. .+| |.+.++ |...+|| ++.+.+-++++...|-++-+.+..-|-
T Consensus 20 ~Gkii~mfP~~F--~sl~dLk~~tLRLYF~P~~~e~p~~~lIPnvNCIEi~V~~~~ei~elFG~Lv~~S~sl~~iL~ 94 (152)
T 4hce_A 20 EGKIVGMNPPQF--ASINEFKYCTLKLYFTQLLPNVPDKVLVPGVNCIEIVIPTRERICELFGVLNCQSDKISDILL 94 (152)
T ss_dssp EEEEEEEESSCC--CSGGGGSSSCEEEEEECCCSSSCCCCBCBTTTBEEEEECCHHHHHHHHCGGGCSHHHHHHHHT
T ss_pred EEEEEEecCCCc--chhhhhhccEEEEEEEeCCCcCCcccccCCCCeEEEEecCHHHHHHHHhHhhcCHHHHHHHHh
Confidence 344566677777 78999887 677 888662 3478899 789999999999999999888877653
No 8
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=31.70 E-value=92 Score=21.55 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=30.4
Q ss_pred eeecC-ccceEEeeCChhH-----HHHHHHHHHHHHHHHHHHhhcC
Q psy14594 86 VRYNP-YTQSVDVIDSKVQ-----LSELVQNINGEMQILLTSLKKI 125 (125)
Q Consensus 86 ~~Yd~-~t~si~~~~~~~~-----~~~~~~~~~~~l~~l~~al~k~ 125 (125)
=-||| .|+-++..++|.. .++.+..|+.++..|...+.+|
T Consensus 49 Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 49 GDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp SCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888 5888888888754 4577888888888888777654
No 9
>3nfg_A DNA-directed RNA polymerase I subunit RPA49; triple barrel, transcription, dimerization; 2.51A {Candida glabrata}
Probab=30.19 E-value=38 Score=23.49 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=25.8
Q ss_pred ceeEEecChHHHhhccc-eeeeecCccceEEeeC
Q psy14594 67 PLYFVAESFEDAKDKMM-FGVRYNPYTQSVDVID 99 (125)
Q Consensus 67 p~YFv~eSfe~l~~~lr-F~~~Yd~~t~si~~~~ 99 (125)
..=|+...++..-..++ |--.|||.|+++++..
T Consensus 57 rLdY~g~e~~~~~~~~~y~VgVyDp~t~~lel~~ 90 (102)
T 3nfg_A 57 RLEYDGETDELTTKTNQYMVGLYDKQSGKINLYR 90 (102)
T ss_dssp SEEEEEECCHHHHHHEEEEEEEEETTTTEEEEEE
T ss_pred ceEEEecccccCcccccEEEEEEcCCCCeEEEEE
Confidence 45577777777555566 9999999999999865
No 10
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=29.45 E-value=40 Score=20.92 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=22.3
Q ss_pred cChHHHhhccc-----eeeeecCccceEEee
Q psy14594 73 ESFEDAKDKMM-----FGVRYNPYTQSVDVI 98 (125)
Q Consensus 73 eSfe~l~~~lr-----F~~~Yd~~t~si~~~ 98 (125)
-|.+||..+|. |-+..|..|..+.|+
T Consensus 13 msveEAv~qmel~gh~F~vF~n~~t~~~nVv 43 (57)
T 3k2t_A 13 MDSEEAVLQMNLLGHSFYVYTDAETNGTNIV 43 (57)
T ss_dssp BCHHHHHHHHHHHTCSEEEEEBSSSCCEEEE
T ss_pred CCHHHHHHHHHhCCCcEEEEEcCCCCCEEEE
Confidence 37788888877 999999999999875
No 11
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=28.36 E-value=59 Score=21.84 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=29.5
Q ss_pred ChHHHhhccc----------eeeeecCccceEEeeCChhHHHHHHHH
Q psy14594 74 SFEDAKDKMM----------FGVRYNPYTQSVDVIDSKVQLSELVQN 110 (125)
Q Consensus 74 Sfe~l~~~lr----------F~~~Yd~~t~si~~~~~~~~~~~~~~~ 110 (125)
+|++|.++++ |.+.|--....--.+.+...+..|+.-
T Consensus 27 ~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l 73 (89)
T 1vd2_A 27 SFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRL 73 (89)
T ss_dssp CHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHH
Confidence 8999999988 888886666666677788888888763
No 12
>2y9k_A Protein INVG; protein transport, type III secretion system, outer membrane secretin family, C15 fold; 8.30A {Salmonella enterica subsp}
Probab=28.14 E-value=82 Score=21.72 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.7
Q ss_pred eeeeecCccceEEeeCChhHHHHHHH
Q psy14594 84 FGVRYNPYTQSVDVIDSKVQLSELVQ 109 (125)
Q Consensus 84 F~~~Yd~~t~si~~~~~~~~~~~~~~ 109 (125)
+.++.|+-|.++-|-+.+..+..+.+
T Consensus 103 g~v~~d~~tn~l~v~g~~~~v~~v~~ 128 (137)
T 2y9k_A 103 YPLRGDNRKGTFYVSGPPVYVDMVVN 128 (137)
T ss_dssp SCEEECSSTTEEEEEECHHHHHHHHH
T ss_pred CceEECCCCCEEEEECcHHHHHHHHH
Confidence 99999999999999999888776554
No 13
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=27.90 E-value=46 Score=21.34 Aligned_cols=26 Identities=35% Similarity=0.220 Sum_probs=22.5
Q ss_pred cChHHHhhccc-----eeeeecCccceEEee
Q psy14594 73 ESFEDAKDKMM-----FGVRYNPYTQSVDVI 98 (125)
Q Consensus 73 eSfe~l~~~lr-----F~~~Yd~~t~si~~~ 98 (125)
-|.+||..+|. |-+..|..|..+.|+
T Consensus 13 MsveEAv~qmel~gh~F~vF~n~etg~~nVV 43 (65)
T 3ka5_A 13 MSEEEAVLEMELLGHNFFVFQNGDSNEVNVV 43 (65)
T ss_dssp BCHHHHHHHHHHHTCSEEEEEETTTTEEEEE
T ss_pred CCHHHHHHHHHhCCCcEEEEEeCCCCCEEEE
Confidence 47889988887 999999999999875
No 14
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=26.65 E-value=64 Score=22.86 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=34.5
Q ss_pred ecChHHHhhccc----------eeeeecCccceEEeeCChhHHHHHHHHHH
Q psy14594 72 AESFEDAKDKMM----------FGVRYNPYTQSVDVIDSKVQLSELVQNIN 112 (125)
Q Consensus 72 ~eSfe~l~~~lr----------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~ 112 (125)
..||+++.++++ |.+.|.-.-.-.-.+.+.+.+..|++..+
T Consensus 56 ~~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~ 106 (117)
T 2ktr_A 56 PGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK 106 (117)
T ss_dssp CCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence 368999999887 88999888888888899999999988765
No 15
>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli}
Probab=25.57 E-value=87 Score=22.42 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=22.4
Q ss_pred e-eeeecCccceEEeeCChhHHHHHHHH
Q psy14594 84 F-GVRYNPYTQSVDVIDSKVQLSELVQN 110 (125)
Q Consensus 84 F-~~~Yd~~t~si~~~~~~~~~~~~~~~ 110 (125)
| .+++|+-|.++-|-+.+..+..+.+-
T Consensus 118 ~~~v~~d~~tn~l~Vsg~p~~v~~v~~~ 145 (156)
T 3gr5_A 118 SCNVRKITTFNSIEVRGVPECIKYITSL 145 (156)
T ss_dssp TEEEEECSSTTCEEEEECHHHHHHHHHH
T ss_pred CCeEEEeCCCCEEEEEcCHHHHHHHHHH
Confidence 7 99999999999999988777655443
No 16
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=24.68 E-value=68 Score=22.02 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=33.5
Q ss_pred cChHHHhhccc----------eeeeecCccceEEeeCChhHHHHHHHHHH
Q psy14594 73 ESFEDAKDKMM----------FGVRYNPYTQSVDVIDSKVQLSELVQNIN 112 (125)
Q Consensus 73 eSfe~l~~~lr----------F~~~Yd~~t~si~~~~~~~~~~~~~~~~~ 112 (125)
.||+++.++++ |.+.|.-.-.-.-.+.+.+.+..|++..+
T Consensus 42 ~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~ 91 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK 91 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence 47888888877 88999888888888899999999988765
No 17
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=23.49 E-value=51 Score=21.15 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=22.2
Q ss_pred cChHHHhhccc-----eeeeecCccceEEee
Q psy14594 73 ESFEDAKDKMM-----FGVRYNPYTQSVDVI 98 (125)
Q Consensus 73 eSfe~l~~~lr-----F~~~Yd~~t~si~~~ 98 (125)
-|.+||..+|. |-+..|..|..+.|+
T Consensus 14 MsveEAv~qMel~gh~F~vF~n~etg~~nVV 44 (66)
T 3lyv_A 14 MDVEEARLQMELLGHDFFIYTDSEDGATNIL 44 (66)
T ss_dssp ECHHHHHHHHHTTTCSEEEEEETTTCSEEEE
T ss_pred CCHHHHHHHHHcCCCcEEEEEeCCCCCEEEE
Confidence 47889988877 999999999999875
No 18
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=23.22 E-value=1e+02 Score=16.91 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcC
Q psy14594 102 VQLSELVQNINGEMQILLTSLKKI 125 (125)
Q Consensus 102 ~~~~~~~~~~~~~l~~l~~al~k~ 125 (125)
+.+++-+..++..++.|-..|+++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457777888888888888888765
No 19
>3nff_A RNA polymerase I subunit A49; tripple barrel, transcription, dimerization; 3.24A {Candida glabrata}
Probab=20.81 E-value=57 Score=23.39 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=24.6
Q ss_pred ceeEEecChHHHhhccc-eeeeecCccceEEeeCC
Q psy14594 67 PLYFVAESFEDAKDKMM-FGVRYNPYTQSVDVIDS 100 (125)
Q Consensus 67 p~YFv~eSfe~l~~~lr-F~~~Yd~~t~si~~~~~ 100 (125)
..=|+...++.+-..++ |--.|||.|.++++..-
T Consensus 57 rLdY~g~e~~~~~~~~~YyVgVyDP~T~~leL~~A 91 (122)
T 3nff_A 57 RLEYDGETDELTTKTNQYMVGLYDKQSGKINLYRA 91 (122)
T ss_dssp SCEEEEECCTTHHHHEEEEEEEEETTTTEEEEEEC
T ss_pred ceeEEecccccccccccEEEEEEcCCCCeEEEEEc
Confidence 34567766665333455 99999999999998654
Done!