RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14594
(125 letters)
>gnl|CDD|130335 TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydroxylase, tetrameric
form. This model describes the larger, tetrameric form
of phenylalanine-4-hydroxylase, as found in metazoans.
The enzyme irreversibly converts phenylalanine to
tryosine and is known to be the rate-limiting step in
phenylalanine catabolism in some systems. It is closely
related to metazoan tyrosine 3-monooxygenase and
tryptophan 5-monoxygenase, and more distantly to
monomeric phenylalanine-4-hydroxylases of some
Gram-negative bacteria. The member of this family from
Drosophila has been described as having both
phenylalanine-4-hydroxylase and tryptophan
5-monoxygenase activity (PMID:1371286). However, a
Drosophila member of the tryptophan 5-monoxygenase clade
has subsequently been discovered.
Length = 436
Score = 203 bits (518), Expect = 3e-65
Identities = 75/127 (59%), Positives = 94/127 (74%), Gaps = 9/127 (7%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
YWFT+EFGLC+Q+G+ KA+GAGLLSSFGELQYCLSDKP+ F+P VT + YPITE+QP
Sbjct: 309 YWFTIEFGLCKQDGEKKAYGAGLLSSFGELQYCLSDKPEVVDFDPEVTCVTKYPITEFQP 368
Query: 68 LYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL 118
LYF+AESFEDAK+K+ F VRYN YTQ V+++D K QL L +I E+ IL
Sbjct: 369 LYFLAESFEDAKEKLKSFAATIPRPFSVRYNAYTQRVEILDKKAQLQRLADDIRSEISIL 428
Query: 119 LTSLKKI 125
+L K+
Sbjct: 429 QEALGKL 435
>gnl|CDD|239463 cd03347, eu_PheOH, Eukaryotic phenylalanine-4-hydroxylase
(eu_PheOH); a member of the biopterin-dependent aromatic
amino acid hydroxylase family of non-heme,
iron(II)-dependent enzymes that also includes
prokaryotic phenylalanine-4-hydroxylase (pro_PheOH),
eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic
tryptophan hydroxylase (TrpOH). PheOH catalyzes the
first and rate-limiting step in the metabolism of the
amino acid L-phenylalanine (L-Phe), the hydroxylation of
L-Phe to L-tyrosine (L-Tyr). It uses
(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the
physiological electron donor. The catalytic activity of
the tetrameric enzyme is tightly regulated by the
binding of L-Phe and BH4 as well as by phosphorylation.
Mutations in the human enzyme are linked to a severe
variant of phenylketonuria.
Length = 306
Score = 171 bits (436), Expect = 3e-54
Identities = 68/103 (66%), Positives = 81/103 (78%), Gaps = 9/103 (8%)
Query: 5 SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
+ YWFTVEFGLC+Q G +KA+GAGLLSSFGELQYCLSDKP+ PFEP TA+ YPITE
Sbjct: 204 ATVYWFTVEFGLCKQGGSIKAYGAGLLSSFGELQYCLSDKPELLPFEPEKTAVTKYPITE 263
Query: 65 YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVI 98
+QPLY+VAESFEDAK+K+ F VRYNPYTQ ++V+
Sbjct: 264 FQPLYYVAESFEDAKEKLRNFAATIPRPFSVRYNPYTQRIEVL 306
>gnl|CDD|201173 pfam00351, Biopterin_H, Biopterin-dependent aromatic amino acid
hydroxylase. This family includes
phenylalanine-4-hydroxylase, the phenylketonuria disease
protein.
Length = 306
Score = 168 bits (428), Expect = 3e-53
Identities = 63/103 (61%), Positives = 79/103 (76%), Gaps = 9/103 (8%)
Query: 5 SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
S YWFTVEFGLC+Q GQ+KA+GAGLLSS+GEL + LSDKP+ + FEP TA+Q Y TE
Sbjct: 204 STIYWFTVEFGLCKQNGQIKAYGAGLLSSYGELLHALSDKPELRAFEPEATAVQPYQDTE 263
Query: 65 YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVI 98
+QP+Y+VAESFEDAK+K+ F VRYNPYTQ ++V+
Sbjct: 264 FQPVYYVAESFEDAKEKLRNFASTIPRPFSVRYNPYTQRIEVL 306
>gnl|CDD|238215 cd00361, arom_aa_hydroxylase, Biopterin-dependent aromatic amino
acid hydroxylase; a family of non-heme,
iron(II)-dependent enzymes that includes prokaryotic and
eukaryotic phenylalanine-4-hydroxylase (PheOH),
eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic
tryptophan hydroxylase (TrpOH). PheOH converts
L-phenylalanine to L-tyrosine, an important step in
phenylalanine catabolism and neurotransmitter
biosynthesis, and is linked to a severe variant of
phenylketonuria in humans. TyrOH and TrpOH are involved
in the biosynthesis of catecholamine and serotonin,
respectively. The eukaryotic enzymes are all
homotetramers.
Length = 221
Score = 146 bits (372), Expect = 1e-45
Identities = 48/75 (64%), Positives = 59/75 (78%)
Query: 7 CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQ 66
YWFTVEFGL +++G+LKA+GAGLLSS+GELQ+ LSDKP+R PF+P A Y IT +Q
Sbjct: 147 LYWFTVEFGLIKEDGELKAYGAGLLSSYGELQHALSDKPKRIPFDPERVARTPYDITSFQ 206
Query: 67 PLYFVAESFEDAKDK 81
P YFV ESFE K+K
Sbjct: 207 PTYFVIESFEQLKEK 221
>gnl|CDD|130336 TIGR01269, Tyr_3_monoox, tyrosine 3-monooxygenase, tetrameric.
This model describes tyrosine 3-monooxygenase, a member
of the family of tetrameric, biopterin-dependent
aromatic amino acid hydroxylases found in metazoans. It
is closely related to tetrameric
phenylalanine-4-hydroxylase and tryptophan
5-monooxygenase, and more distantly related to the
monomeric phenylalanine-4-hydroxylase found in some
Gram-negative bacteria.
Length = 457
Score = 150 bits (379), Expect = 2e-44
Identities = 59/130 (45%), Positives = 87/130 (66%), Gaps = 9/130 (6%)
Query: 5 SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
S YWFTVEFGLC++ G+ KA+GAGLLSS+GEL++ SD +++PF P+ A+Q Y
Sbjct: 327 STLYWFTVEFGLCKENGETKAYGAGLLSSYGELEHAFSDLSEKRPFNPNDAAVQPYQDQG 386
Query: 65 YQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEM 115
YQ +YFV ESFEDAK K+ F VR++P T++V+V+D + EL++++ E+
Sbjct: 387 YQKIYFVTESFEDAKRKLRNYINTSGRPFIVRFDPITETVEVLDRFSKRKELLKHVKEEI 446
Query: 116 QILLTSLKKI 125
L T+L +
Sbjct: 447 GQLTTALNHL 456
>gnl|CDD|239461 cd03345, eu_TyrOH, Eukaryotic tyrosine hydroxylase (TyrOH); a
member of the biopterin-dependent aromatic amino acid
hydroxylase family of non-heme, iron(II)-dependent
enzymes that also includes prokaryotic and eukaryotic
phenylalanine-4-hydroxylase (PheOH) and eukaryotic
tryptophan hydroxylase (TrpOH). TyrOH catalyzes the
conversion of tyrosine to L-dihydroxyphenylalanine
(L-DOPA), the rate-limiting step in the biosynthesis of
the catecholamines dopamine, noradrenaline, and
adrenaline.
Length = 298
Score = 142 bits (360), Expect = 4e-43
Identities = 56/96 (58%), Positives = 72/96 (75%), Gaps = 9/96 (9%)
Query: 5 SLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
S YWFTVEFGLC++ G+LKA+GAGLLSS+GEL + LSD+P+ +PF+P+ TA+Q Y
Sbjct: 203 STLYWFTVEFGLCKENGELKAYGAGLLSSYGELLHALSDEPEHRPFDPAATAVQPYQDQT 262
Query: 65 YQPLYFVAESFEDAKDKMM---------FGVRYNPY 91
YQP+YFV+ESF DAKDK+ F VRY+PY
Sbjct: 263 YQPIYFVSESFSDAKDKLRNYASTMKRPFSVRYDPY 298
>gnl|CDD|130337 TIGR01270, Trp_5_monoox, tryptophan 5-monooxygenase, tetrameric.
This model describes tryptophan 5-monooxygenase, a
member of the family of tetrameric, biopterin-dependent
aromatic amino acid hydroxylases found in metazoans. It
is closely related to tetrameric
phenylalanine-4-hydroxylase and tyrosine
3-monooxygenase, and more distantly related to the
monomeric phenylalanine-4-hydroxylase found in some
Gram-negative bacteria [Energy metabolism, Amino acids
and amines].
Length = 464
Score = 137 bits (346), Expect = 1e-39
Identities = 56/129 (43%), Positives = 79/129 (61%), Gaps = 10/129 (7%)
Query: 7 CYWFTVEFGLCRQ-EGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEY 65
Y+FT+EFGLC+Q + Q K +GAGLLSS ELQ+ LS + KPF+P Q IT +
Sbjct: 335 LYFFTIEFGLCKQDDEQFKVYGAGLLSSVAELQHALSGSAKIKPFDPDRVCEQECLITTF 394
Query: 66 QPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQ 116
Q YF SFE+AK+KM FGVRYNPYT+SV+V+ + ++ V + ++
Sbjct: 395 QNAYFYTRSFEEAKEKMREFTNTIKRPFGVRYNPYTESVEVLKNSKSITLAVNELRSDLN 454
Query: 117 ILLTSLKKI 125
++ +L KI
Sbjct: 455 LVAGALHKI 463
>gnl|CDD|239462 cd03346, eu_TrpOH, Eukaryotic tryptophan hydroxylase (TrpOH); a
member of the biopterin-dependent aromatic amino acid
hydroxylase family of non-heme, iron(II)-dependent
enzymes that also includes prokaryotic and eukaryotic
phenylalanine-4-hydroxylase (PheOH) and eukaryotic
tyrosine hydroxylase (TyrOH). TrpOH oxidizes
L-tryptophan to 5-hydroxy-L-tryptophan, the
rate-limiting step in the biosynthesis of serotonin
(5-hydroxytryptamine), a widely distributed hormone and
neurotransmitter.
Length = 287
Score = 114 bits (286), Expect = 4e-32
Identities = 48/76 (63%), Positives = 61/76 (80%)
Query: 7 CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQ 66
CY+FTVEFGLC+Q+GQLK +GAGLLSS GEL++ LS + + KPF+P VT Q IT +Q
Sbjct: 206 CYFFTVEFGLCKQDGQLKVYGAGLLSSIGELKHALSGEAKVKPFDPKVTCKQECLITTFQ 265
Query: 67 PLYFVAESFEDAKDKM 82
YFV+ESFE+AK+KM
Sbjct: 266 EAYFVSESFEEAKEKM 281
>gnl|CDD|237020 PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed.
Length = 275
Score = 106 bits (268), Expect = 2e-29
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 7 CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQT-YPITE 64
YWFTVEFGL R G L+ +GAG+LSS GE Y L SD P R+PF+ ++T Y I
Sbjct: 169 LYWFTVEFGLIRTPGGLRIYGAGILSSPGETLYALESDSPNRRPFDL-ERVMRTPYRIDI 227
Query: 65 YQPLYFVAESFED 77
+QP YFV +SFE
Sbjct: 228 FQPTYFVIDSFEQ 240
>gnl|CDD|239464 cd03348, pro_PheOH, Prokaryotic phenylalanine-4-hydroxylase
(pro_PheOH); a member of the biopterin-dependent
aromatic amino acid hydroxylase family of non-heme,
iron(II)-dependent enzymes that also includes the
eukaryotic proteins, phenylalanine-4-hydroxylase
(eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan
hydroxylase (TrpOH). PheOH catalyzes the hydroxylation
of L-Phe to L-tyrosine (L-Tyr). It uses
(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the
physiological electron donor.
Length = 228
Score = 97.3 bits (243), Expect = 3e-26
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDK-PQRKPFEPSVTALQTYPITEYQ 66
YW+TVEFGL ++ G L+ +GAG+LSS GE Y L P R PF+ Y I +Q
Sbjct: 154 YWYTVEFGLIQEPGGLRIYGAGILSSPGETLYALESPDPNRIPFDLERVMRTPYRIDSFQ 213
Query: 67 PLYFVAESFED 77
P YFV +SFE
Sbjct: 214 PTYFVIDSFEQ 224
>gnl|CDD|225727 COG3186, COG3186, Phenylalanine-4-hydroxylase [Amino acid transport
and metabolism].
Length = 291
Score = 82.9 bits (205), Expect = 3e-20
Identities = 37/72 (51%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 7 CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQT-YPITE 64
YW+TVEFGL G LK +GAG+LSS EL Y L SD P R PF+ ++T Y I
Sbjct: 184 LYWYTVEFGLVETPGGLKIYGAGILSSPTELVYALESDSPNRIPFDLE-QVMRTPYRIDT 242
Query: 65 YQPLYFVAESFE 76
+QP YFV SF+
Sbjct: 243 FQPTYFVIPSFD 254
>gnl|CDD|130334 TIGR01267, Phe4hydrox_mono, phenylalanine-4-hydroxylase, monomeric
form. This model describes the smaller, monomeric form
of phenylalanine-4-hydroxylase, as found in a small
number of Gram-negative bacteria. The enzyme
irreversibly converts phenylalanine to tryosine and is
known to be the rate-limiting step in phenylalanine
catabolism in some systems. This family is of biopterin
and metal-dependent hydroxylases is related to a family
of longer, multimeric aromatic amino acid hydroxylases
that have additional N-terminal regulatory sequences.
These include tyrosine 3-monooxygenase,
phenylalanine-4-hydroxylase, and tryptophan
5-monoxygenase [Energy metabolism, Amino acids and
amines].
Length = 248
Score = 80.7 bits (199), Expect = 1e-19
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQT-YPITEY 65
YW+T+EFGL + + +GAG+LSS E Y L SD+P F+ + A++T Y I +
Sbjct: 154 YWYTIEFGLVETDQGKRIYGAGILSSPKETVYSLESDEPLHVAFDL-LEAMRTPYRIDIF 212
Query: 66 QPLYFVAESFEDAKD 80
QPLYFV SF+ D
Sbjct: 213 QPLYFVLPSFKRLFD 227
>gnl|CDD|237598 PRK14056, PRK14056, phenylalanine 4-monooxygenase; Provisional.
Length = 578
Score = 76.6 bits (189), Expect = 2e-17
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 8 YWFTVEFGLCRQEGQL---KAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITE 64
+W+TVE+GL G L K +GAGLLSS GE ++CL+D ++ PF TY IT+
Sbjct: 207 FWWTVEYGLI---GTLDNPKIYGAGLLSSVGESKHCLTDAVEKVPFSIEACTSTTYDITK 263
Query: 65 YQPLYFVAESFE 76
QP FV FE
Sbjct: 264 MQPQLFVCPDFE 275
>gnl|CDD|172547 PRK14055, PRK14055, aromatic amino acid hydroxylase; Provisional.
Length = 362
Score = 37.7 bits (87), Expect = 6e-04
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 7 CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFE 51
C+WFTVE GL KA+GA L+SS EL + D + P E
Sbjct: 255 CFWFTVESGLIENHEGRKAYGAVLISSPQELGHAFIDNVRVLPLE 299
>gnl|CDD|240354 PTZ00310, PTZ00310, AMP deaminase; Provisional.
Length = 1453
Score = 28.2 bits (63), Expect = 1.2
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 24 KAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQ-PLY 69
A GA L SF L L K R+ E Q TEY PLY
Sbjct: 293 GALGAELRQSFLSLHGNLCGKLLRRELERREYQKQQPQATEYSLPLY 339
>gnl|CDD|202716 pfam03646, FlaG, FlaG protein. Although important for flagella the
exact function of this protein is unknown.
Length = 107
Score = 26.8 bits (60), Expect = 2.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 92 TQSVDVIDSKVQLSELVQNINGEMQILLTSLK 123
T + + SK +L E V+ +N +Q L T+L+
Sbjct: 27 TAAEEKEVSKEELEEAVEKLNKFLQSLNTNLE 58
>gnl|CDD|172795 PRK14319, glmM, phosphoglucosamine mutase; Provisional.
Length = 430
Score = 27.1 bits (60), Expect = 2.6
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 69 YFVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQIL-LTSLK 123
Y + + E+ +K M + Y+PY + VID K+ E I + + L L+ +K
Sbjct: 109 YKLPDEVEERIEKEMNEIHYSPYNEVGCVIDYKLAFEEYFNYIKQQYEGLDLSGIK 164
>gnl|CDD|214695 smart00493, TOPRIM, topoisomerases, DnaG-type primases, OLD family
nucleases and RecR proteins.
Length = 75
Score = 25.3 bits (56), Expect = 4.2
Identities = 11/51 (21%), Positives = 16/51 (31%)
Query: 70 FVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLT 120
+ E DA G + + SK Q+ L + IL T
Sbjct: 4 IIVEGPADAIALEKAGGKRGNVVALGGHLLSKEQIKLLKKLAKKAEVILAT 54
>gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated.
Length = 405
Score = 26.6 bits (59), Expect = 4.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 84 FGVRYNPYTQSVDVIDSKVQLSELVQNI 111
FGV+ NP TQ V + SK + + Q I
Sbjct: 85 FGVKLNPDTQVVATLGSKEGFANMAQAI 112
>gnl|CDD|219962 pfam08668, HDOD, HDOD domain.
Length = 195
Score = 25.7 bits (57), Expect = 7.2
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 16 LCRQEGQLK---AFGAGLLSSFGEL--QYCLSDKPQR 47
L R+ G AF AGLL G+L L D+ +
Sbjct: 109 LARRLGLDDPEEAFTAGLLHDIGKLILLSLLPDEYEE 145
>gnl|CDD|183373 PRK11906, PRK11906, transcriptional regulator; Provisional.
Length = 458
Score = 25.8 bits (56), Expect = 7.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 90 PYTQSVDVIDSKVQLSELVQNINGE 114
P+T S++ +D + ELVQ I+ +
Sbjct: 124 PFTTSLNTLDPLILNQELVQIISNK 148
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,105,724
Number of extensions: 503544
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 25
Length of query: 125
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 40
Effective length of database: 7,167,512
Effective search space: 286700480
Effective search space used: 286700480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)