RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14594
(125 letters)
>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis,
non-heme iron, P substrate; 2.30A {Rattus norvegicus}
SCOP: d.178.1.1 PDB: 2toh_A* 2xsn_A
Length = 343
Score = 163 bits (414), Expect = 6e-51
Identities = 61/134 (45%), Positives = 89/134 (66%), Gaps = 9/134 (6%)
Query: 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTY 60
+ + S YWFTVEFGLC+Q G+LKA+GAGLLSS+GEL + LS++P+ + F+P A+Q Y
Sbjct: 209 IEKLSTVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEEPEVRAFDPDTAAVQPY 268
Query: 61 PITEYQPLYFVAESFEDAKDKM---------MFGVRYNPYTQSVDVIDSKVQLSELVQNI 111
YQP+YFV+ESF DAKDK+ F V+++PYT ++DV+DS + ++ +
Sbjct: 269 QDQTYQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTIQRSLEGV 328
Query: 112 NGEMQILLTSLKKI 125
E+ L +L I
Sbjct: 329 QDELHTLAHALSAI 342
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid
hydroxylase, phosphorylation, intrasteric regulation,
allosteric regulation; 2.20A {Rattus norvegicus} SCOP:
d.58.18.3 d.178.1.1 PDB: 2phm_A
Length = 429
Score = 147 bits (371), Expect = 8e-44
Identities = 64/112 (57%), Positives = 81/112 (72%), Gaps = 9/112 (8%)
Query: 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTY 60
+ + + YWFTVEFGLC++ +KA+GAGLLSSFGELQYCLSDKP+ P E TA Q Y
Sbjct: 318 IEKLATIYWFTVEFGLCKEGDSIKAYGAGLLSSFGELQYCLSDKPKLLPLELEKTACQEY 377
Query: 61 PITEYQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQ 103
+TE+QPLY+VAESF DAK+K+ F VRY+PYTQ V+V+D+ Q
Sbjct: 378 SVTEFQPLYYVAESFSDAKEKVRTFAATIPRPFSVRYDPYTQRVEVLDNTQQ 429
>1j8u_A Phenylalanine-4-hydroxylase; ferrous iron, 2-His-1-carboxylate
facial triad, tetrahydrobiopterin, oxidoreductase; HET:
H4B; 1.50A {Homo sapiens} SCOP: d.178.1.1 PDB: 1j8t_A*
1kw0_A* 1lrm_A* 1mmk_A* 1mmt_A* 4anp_A* 2pah_A 1pah_A
3pah_A* 4pah_A* 5pah_A* 6pah_A* 1tdw_A 1tg2_A* 1dmw_A*
Length = 325
Score = 142 bits (360), Expect = 4e-43
Identities = 62/109 (56%), Positives = 81/109 (74%), Gaps = 9/109 (8%)
Query: 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTY 60
+ + + YWFTVEFGLC+Q +KA+GAGLLSSFGELQYCLS+KP+ P E TA+Q Y
Sbjct: 216 IEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNY 275
Query: 61 PITEYQPLYFVAESFEDAKDKM---------MFGVRYNPYTQSVDVIDS 100
+TE+QPLY+VAESF DAK+K+ F VRY+PYTQ ++V+D+
Sbjct: 276 TVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDN 324
>1mlw_A Tryptophan 5-monooxygenase; aromatic amino acid hydroxylase
catalytic domain fold, oxidoreductase; HET: HBI; 1.71A
{Homo sapiens} SCOP: d.178.1.1 PDB: 3hf6_A* 3hf8_A*
3hfb_A* 3e2t_A*
Length = 301
Score = 122 bits (308), Expect = 1e-35
Identities = 52/98 (53%), Positives = 69/98 (70%), Gaps = 9/98 (9%)
Query: 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTY 60
+ + + CY+FTVEFGLC+Q+GQL+ FGAGLLSS EL++ LS + KPF+P +T Q
Sbjct: 204 VQKLATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAKVKPFDPKITCKQEC 263
Query: 61 PITEYQPLYFVAESFEDAKDKMM---------FGVRYN 89
IT +Q +YFV+ESFEDAK+KM FGV+YN
Sbjct: 264 LITTFQDVYFVSESFEDAKEKMREFTKTIKRPFGVKYN 301
>1ltz_A Phenylalanine-4-hydroxylase; oxidoreductase, dihydrobiopterin,
bacterial enzyme; HET: HBI; 1.40A {Chromobacterium
violaceum} SCOP: d.178.1.1 PDB: 1ltv_A 1ltu_A*
Length = 297
Score = 119 bits (299), Expect = 3e-34
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 1 MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQT 59
+ + YW+TVEFGL ++ +GAG+LSS E YCL S P R F+
Sbjct: 172 LPMLARLYWYTVEFGLINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTR 231
Query: 60 YPITEYQPLYFVAESFEDAKDK-------MMFGVRYNPYTQSVDVIDS 100
Y I +Q YFV +SF+ D + + + D+
Sbjct: 232 YRIDTFQKTYFVIDSFKQLFDATAPDFAPLYLQLADAQPWGAGDIAPD 279
>2v27_A Phenylalanine hydroxylase; cold adaptation, tetrahydrobiopterin,
stability, flexibility, alkaptonuria, oxidoreductase;
1.50A {Colwellia psychrerythraea 34H} PDB: 2v28_A
Length = 275
Score = 114 bits (286), Expect = 2e-32
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 7 CYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDK-PQRKPFEPSVTALQTYPITEY 65
YWFT+EFGL L+ +G G+LSS GE Y +++ RKPF+ Y I
Sbjct: 161 LYWFTIEFGLLDTPKGLRIYGGGVLSSPGETDYAMNNTDVDRKPFDILDVLRTPYRIDIM 220
Query: 66 QPLYFVAESFEDAKDKMMFG 85
QP+Y++ D + F
Sbjct: 221 QPIYYMLTKVSDLDEIRKFE 240
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 4e-05
Identities = 16/114 (14%), Positives = 30/114 (26%), Gaps = 26/114 (22%)
Query: 8 YWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQP 67
+W C + LL SD
Sbjct: 185 FWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR---------------- 226
Query: 68 LYFVAESFEDAKDKMMFGVRYNPYTQSVDVIDSKVQLSELVQNINGEMQILLTS 121
+ ++ ++ PY + V+ + VQ ++ N +ILLT+
Sbjct: 227 -------IHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFNLSCKILLTT 272
>1qr0_A 4'-phosphopantetheinyl transferase SFP; protein-coenzyme A complex;
HET: COA; 1.90A {Bacillus subtilis} SCOP: d.150.1.1
d.150.1.1
Length = 228
Score = 26.4 bits (58), Expect = 2.8
Identities = 12/56 (21%), Positives = 16/56 (28%)
Query: 17 CRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTYPITEYQPLYFVA 72
+E +K G GL L Q P + E P Y +A
Sbjct: 148 SMKESFIKQEGKGLSLPLDSFSVRLHQDGQVSIELPDSHSPCYIKTYEVDPGYKMA 203
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 25.7 bits (57), Expect = 4.7
Identities = 2/16 (12%), Positives = 6/16 (37%)
Query: 1 MVEWSLCYWFTVEFGL 16
+V+ L ++
Sbjct: 43 LVDLILVIILWADYAY 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,794,115
Number of extensions: 87859
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 15
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)