RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14594
         (125 letters)



>d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 336

 Score =  182 bits (464), Expect = 6e-59
 Identities = 61/134 (45%), Positives = 89/134 (66%), Gaps = 9/134 (6%)

Query: 1   MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTY 60
           + + S  YWFTVEFGLC+Q G+LKA+GAGLLSS+GEL + LS++P+ + F+P   A+Q Y
Sbjct: 202 IEKLSTVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEEPEVRAFDPDTAAVQPY 261

Query: 61  PITEYQPLYFVAESFEDAKDKMM---------FGVRYNPYTQSVDVIDSKVQLSELVQNI 111
               YQP+YFV+ESF DAKDK+          F V+++PYT ++DV+DS   +   ++ +
Sbjct: 262 QDQTYQPVYFVSESFNDAKDKLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTIQRSLEGV 321

Query: 112 NGEMQILLTSLKKI 125
             E+  L  +L  I
Sbjct: 322 QDELHTLAHALSAI 335


>d1j8ua_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 307

 Score =  156 bits (395), Expect = 8e-49
 Identities = 61/107 (57%), Positives = 79/107 (73%), Gaps = 9/107 (8%)

Query: 1   MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTY 60
           + + +  YWFTVEFGLC+Q   +KA+GAGLLSSFGELQYCLS+KP+  P E   TA+Q Y
Sbjct: 201 IEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNY 260

Query: 61  PITEYQPLYFVAESFEDAKDKM---------MFGVRYNPYTQSVDVI 98
            +TE+QPLY+VAESF DAK+K+          F VRY+PYTQ ++V+
Sbjct: 261 TVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVL 307


>d1mlwa_ d.178.1.1 (A:) Tryptophan hydroxylase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 290

 Score =  130 bits (328), Expect = 5e-39
 Identities = 47/82 (57%), Positives = 63/82 (76%)

Query: 1   MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCLSDKPQRKPFEPSVTALQTY 60
           + + + CY+FTVEFGLC+Q+GQL+ FGAGLLSS  EL++ LS   + KPF+P +T  Q  
Sbjct: 202 VQKLATCYFFTVEFGLCKQDGQLRVFGAGLLSSISELKHALSGHAKVKPFDPKITCKQEC 261

Query: 61  PITEYQPLYFVAESFEDAKDKM 82
            IT +Q +YFV+ESFEDAK+KM
Sbjct: 262 LITTFQDVYFVSESFEDAKEKM 283


>d1ltza_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH
           {Chromobacterium violaceum [TaxId: 536]}
          Length = 277

 Score =  122 bits (308), Expect = 3e-36
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 1   MVEWSLCYWFTVEFGLCRQEGQLKAFGAGLLSSFGELQYCL-SDKPQRKPFEPSVTALQT 59
           +   +  YW+TVEFGL      ++ +GAG+LSS  E  YCL S  P R  F+        
Sbjct: 166 LPMLARLYWYTVEFGLINTPAGMRIYGAGILSSKSESIYCLDSASPNRVGFDLMRIMNTR 225

Query: 60  YPITEYQPLYFVAESFEDAKD-------KMMFGVRYNPYTQSVDVIDS 100
           Y I  +Q  YFV +SF+   D        +   +       + D+   
Sbjct: 226 YRIDTFQKTYFVIDSFKQLFDATAPDFAPLYLQLADAQPWGAGDIAPD 273


>d1bh9a_ a.22.1.3 (A:) TAF(II)18 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 45

 Score = 23.0 bits (50), Expect = 3.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)

Query: 81  KMM--FGVRYNPYTQSVDVIDSKV--QLSELVQN 110
            MM  FG   NPYT+SVD+++  V   ++E+   
Sbjct: 8   CMMYGFGDDQNPYTESVDILEDLVIEFITEMTHK 41


>d1n02a_ b.89.1.1 (A:) Cyanovirin-N {Cyanobacterium (Nostoc
           ellipsosporum) [TaxId: 45916]}
          Length = 102

 Score = 24.0 bits (52), Expect = 4.4
 Identities = 4/19 (21%), Positives = 13/19 (68%)

Query: 98  IDSKVQLSELVQNINGEMQ 116
             S + L+ +++N++G ++
Sbjct: 82  NTSSIDLNSVIENVDGSLK 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 443,889
Number of extensions: 17446
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 10
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)