BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14597
         (191 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FTC|J Chain J, Structural Model For The Large Subunit Of The Mammalian
           Mitochondrial Ribosome
 pdb|3IY9|S Chain S, Leishmania Tarentolae Mitochondrial Large Ribosomal
           Subunit Model
          Length = 116

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 13/91 (14%)

Query: 29  GPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWI 75
           GP+ R+  LR+++T L+++ERIE      DE R             DT++  M MADFW+
Sbjct: 11  GPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWL 70

Query: 76  EEKNIVHKLFKVLVPRFQNTTVSYTRAYNAP 106
            EK+++ KLF+VL PR+++ T  YTR    P
Sbjct: 71  TEKDLIPKLFQVLAPRYKDQTGGYTRMLQIP 101


>pdb|2CQM|A Chain A, Solution Structure Of The Mitochondrial Ribosomal Protein
           L17 Isolog
          Length = 122

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 18/113 (15%)

Query: 29  GPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWI 75
           G  G    LR+++T L+++ERIE      DE R             DT++  M MADFW+
Sbjct: 1   GSSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWL 60

Query: 76  EEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGN 128
            EK+++ KLF+VL PR+++ T  YTR     IP+ + +++ +   +VIE +GN
Sbjct: 61  TEKDLIPKLFQVLAPRYKDQTGGYTRMLQ--IPNRSLDRAKM---AVIEYKGN 108


>pdb|3BBO|P Chain P, Homology Model For The Spinach Chloroplast 50s Subunit
           Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
          Length = 205

 Score = 33.5 bits (75), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 16/107 (14%)

Query: 30  PQGRVKKLRSIVTALLKYERIEVYHYDGDEARDTHKETMDMAD-----------FWIEEK 78
           P  R   LR + T LLK+ RI+         R    + + MA             +I EK
Sbjct: 103 PDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEK 162

Query: 79  NIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIEL 125
            IVH LF  +  R+      YTR     I    P + D +  + IEL
Sbjct: 163 QIVHALFAEVPDRYGERNGGYTR-----IIRTLPRRGDNAPMAYIEL 204


>pdb|3C24|A Chain A, Crystal Structure Of A Putative Oxidoreductase
           (Yp_511008.1) From Jannaschia Sp. Ccs1 At 1.62 A
           Resolution
 pdb|3C24|B Chain B, Crystal Structure Of A Putative Oxidoreductase
           (Yp_511008.1) From Jannaschia Sp. Ccs1 At 1.62 A
           Resolution
          Length = 286

 Score = 33.1 bits (74), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 15/79 (18%)

Query: 71  ADFWIEEK---------NIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHS 121
            D WI+E          NI+ K+ + +VPR +  T+       AP     PE++D+++  
Sbjct: 61  GDGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVXPERADITY-- 118

Query: 122 VIELRGNPF-PPLVQRAVD 139
                G+P  PPL     D
Sbjct: 119 ---FIGHPCHPPLFNDETD 134


>pdb|3RDE|A Chain A, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
 pdb|3RDE|B Chain B, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
 pdb|3RDE|C Chain C, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
 pdb|3RDE|D Chain D, Crystal Structure Of The Catalytic Domain Of Porcine
           Leukocyte 12- Lipoxygenase
          Length = 573

 Score = 28.9 bits (63), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 81  VHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLS-FHSVIELRGNPFPPLVQRA 137
           +H +FK+L+P F+ T     RA N  +       SDL  F  V+   G     L++RA
Sbjct: 293 IHPIFKLLIPHFRYTMEINVRARNGLV-------SDLGIFDQVVSTGGGGHVELLRRA 343


>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
           (Aprt) From Leishmania Tarentolae
          Length = 235

 Score = 27.3 bits (59), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 2   NQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSI 40
           + AEV ++VS L IP L    R+ +  G  GR K +R I
Sbjct: 165 SGAEVVEMVSILTIPFLKAAERIHSTAG--GRYKNVRFI 201


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,410,078
Number of Sequences: 62578
Number of extensions: 215865
Number of successful extensions: 481
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 16
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)