Query psy14597
Match_columns 191
No_of_seqs 154 out of 1015
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 15:44:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqm_A Ribosomal protein L17 i 100.0 1.2E-46 4.1E-51 296.0 8.1 107 29-140 1-120 (122)
2 3r8s_N 50S ribosomal protein L 100.0 4.5E-44 1.5E-48 280.7 9.9 106 17-129 1-119 (120)
3 2zjr_K 50S ribosomal protein L 100.0 2.2E-43 7.5E-48 275.4 10.0 105 17-126 1-116 (116)
4 1gd8_A 50S ribosomal protein L 100.0 1.6E-43 5.5E-48 276.9 8.7 106 17-127 1-118 (118)
5 3bbo_P Ribosomal protein L17; 100.0 8.3E-41 2.8E-45 280.7 10.2 103 17-126 90-205 (205)
6 1sy9_B Cyclic-nucleotide-gated 23.1 5.1 0.00017 23.1 -2.3 12 94-105 2-13 (26)
7 2rmg_A Urocortin-2; CRF ligand 15.6 1.9E+02 0.0065 18.0 3.5 27 140-166 7-33 (38)
8 3h0d_A CTSR; protein DNA compl 13.7 59 0.002 26.0 1.1 13 96-108 63-75 (155)
9 1yxb_A PRA-PH, phosphoribosyl- 13.7 65 0.0022 23.8 1.2 23 79-101 4-28 (98)
10 2rmh_A Urocortin-3; CRF ligand 11.7 2.9E+02 0.0099 17.2 3.6 23 140-162 7-29 (38)
No 1
>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S
Probab=100.00 E-value=1.2e-46 Score=295.98 Aligned_cols=107 Identities=42% Similarity=0.661 Sum_probs=102.3
Q ss_pred CcHHHHHHHHHHHHHHHhcCceEechhhHHhhc-------------cCChHHHHHHHHhccchhHHHHHHhhhhhhcCCC
Q psy14597 29 GPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNT 95 (191)
Q Consensus 29 ~~~hR~alLRnlvTsLikhERIeTT~~KAKElR-------------~~~~~t~r~a~~~L~ek~lv~KLF~~LaPRy~~R 95 (191)
||+||++|||||+|+||+||||+||++||||+| ++|.+++|++.+||.|+++|+|||++|+|||++|
T Consensus 1 g~~~R~amlrnl~tsLi~herI~TT~~KAKelR~~aEklITlaK~g~~~~r~rR~a~~~l~d~~~v~KLF~elapry~~R 80 (122)
T 2cqm_A 1 GSSGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQ 80 (122)
T ss_dssp CCCCCSSHHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999999999999999 6787788999999999999999999999999999
Q ss_pred CCCeeeEEecCCCCCCCCCCCCCceEEEEecCCCCCCCcccCcCc
Q psy14597 96 TVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDS 140 (191)
Q Consensus 96 ~GGYTRI~kl~~R~~~~~~gD~A~mAiLELvgnp~ppl~~~~~~~ 140 (191)
+||||||+|+|+|+ ||+|+||||||||||+|||++.+.++
T Consensus 81 ~GGYTRI~K~~~R~-----GD~A~maiIELVd~p~~pl~~~~~~~ 120 (122)
T 2cqm_A 81 TGGYTRMLQIPNRS-----LDRAKMAVIEYKGNCLPPLPLPSGPS 120 (122)
T ss_dssp CSCCEEEEEECCCS-----SSCCCEEEEEESSCCCCCCCCCCSSC
T ss_pred CCCeeEEEECCCCC-----CCCCCeEEEEeCCCCCCCCCCcCCCC
Confidence 99999999999998 99999999999999999999877664
No 2
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...
Probab=100.00 E-value=4.5e-44 Score=280.67 Aligned_cols=106 Identities=23% Similarity=0.260 Sum_probs=99.6
Q ss_pred ccccccCCCCCCCcHHHHHHHHHHHHHHHhcCceEechhhHHhhc-------------cCChHHHHHHHHhccchhHHHH
Q psy14597 17 ILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWIEEKNIVHK 83 (191)
Q Consensus 17 ~~~~~R~~k~~~~~~hR~alLRnlvTsLikhERIeTT~~KAKElR-------------~~~~~t~r~a~~~L~ek~lv~K 83 (191)
|+|+++.-++|++++||++|||||+|+||+||||+||++||||+| ++|. +|+|.+||.|+++|+|
T Consensus 1 MrH~~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~--rR~a~~~l~~~~~v~K 78 (120)
T 3r8s_N 1 MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVAN--RRLAFARTRDNEIVAK 78 (120)
T ss_dssp CCTTCCCCCTTSCHHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHTTSCCHHH--HHHHHHSSCCHHHHHH
T ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHcCeEEEcHHHHHHHHHHHHHHHHHHhcCcHHH--HHHHHHHcCCHHHHHH
Confidence 578888889999999999999999999999999999999999999 3344 4999999999999999
Q ss_pred HHhhhhhhcCCCCCCeeeEEecCCCCCCCCCCCCCceEEEEecCCC
Q psy14597 84 LFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNP 129 (191)
Q Consensus 84 LF~~LaPRy~~R~GGYTRI~kl~~R~~~~~~gD~A~mAiLELvgnp 129 (191)
||++|+|||++|+||||||+|+|+|. ||+||||||||||.+
T Consensus 79 LF~elapry~~R~GGYTRI~K~~~R~-----GD~A~maiiELVd~~ 119 (120)
T 3r8s_N 79 LFNELGPRFASRAGGYTRILKCGFRA-----GDNAPMAYIELVDRS 119 (120)
T ss_dssp HHHTHHHHTTTCCSCCEEEEEEEECT-----TTCCEEEEEEESSCC
T ss_pred HHHHHHHHhcCCCCCeEEEEECCCCC-----CCCcCeEEEEEecCC
Confidence 99999999999999999999999998 999999999999864
No 3
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=100.00 E-value=2.2e-43 Score=275.41 Aligned_cols=105 Identities=22% Similarity=0.260 Sum_probs=94.9
Q ss_pred ccccccCCCCCCCcHHHHHHHHHHHHHHHhcCceEechhhHHhhcc-----------CChHHHHHHHHhccchhHHHHHH
Q psy14597 17 ILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARD-----------THKETMDMADFWIEEKNIVHKLF 85 (191)
Q Consensus 17 ~~~~~R~~k~~~~~~hR~alLRnlvTsLikhERIeTT~~KAKElR~-----------~~~~t~r~a~~~L~ek~lv~KLF 85 (191)
|+|+++..++|++++||++|||||+|+||+||||+||++||||+|. .+..++|+|.+||.|+++|+|||
T Consensus 1 Mrh~~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF 80 (116)
T 2zjr_K 1 MRHGKAGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVM 80 (116)
T ss_dssp --CCCCCCCCSSCTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHhCCHHHHHHHH
Confidence 4566777888999999999999999999999999999999999991 23344599999999999999999
Q ss_pred hhhhhhcCCCCCCeeeEEecCCCCCCCCCCCCCceEEEEec
Q psy14597 86 KVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELR 126 (191)
Q Consensus 86 ~~LaPRy~~R~GGYTRI~kl~~R~~~~~~gD~A~mAiLELv 126 (191)
++|+|||++|+||||||+|+|+|. ||+|||||||||
T Consensus 81 ~~iapry~~R~GGYTRI~K~~~R~-----GD~A~maiiElV 116 (116)
T 2zjr_K 81 DEVAPKYAERPGGYTRILRVGTRR-----GDGVTMALIELV 116 (116)
T ss_dssp HTHHHHTTTSCSCCCEEEECCCCT-----TTCCCEEEEEC-
T ss_pred HHHHHHhCCCCCCeeEEEECCCCC-----CCCCceEEEEeC
Confidence 999999999999999999999998 999999999997
No 4
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Probab=100.00 E-value=1.6e-43 Score=276.88 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=87.3
Q ss_pred ccccccCCCCCCCcHHHHHHHHHHHHHHHhcCceEechhhHHhhcc-----------CChHHHHHHHHhccchhHHHHHH
Q psy14597 17 ILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARD-----------THKETMDMADFWIEEKNIVHKLF 85 (191)
Q Consensus 17 ~~~~~R~~k~~~~~~hR~alLRnlvTsLikhERIeTT~~KAKElR~-----------~~~~t~r~a~~~L~ek~lv~KLF 85 (191)
|+|+++..++|++++||++|||||+|+||+||||+||++||||+|. .+..++|+|.+||.|+++|+|||
T Consensus 1 Mrh~~~~rkLgr~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~g~l~~rR~a~~~l~~~~~v~KLF 80 (118)
T 1gd8_A 1 MRHLKSGRKLNRHSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLF 80 (118)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHhCCHHHHHHHH
Confidence 4566667788999999999999999999999999999999999991 23334599999999999999999
Q ss_pred hhhhhhcCCCCCCeeeEEecC-CCCCCCCCCCCCceEEEEecC
Q psy14597 86 KVLVPRFQNTTVSYTRAYNAP-IPHATPEKSDLSFHSVIELRG 127 (191)
Q Consensus 86 ~~LaPRy~~R~GGYTRI~kl~-~R~~~~~~gD~A~mAiLELvg 127 (191)
++|+|||++|+||||||+|+| +|. ||+||||||||||
T Consensus 81 ~~iapry~~R~GGYTRI~K~~~~R~-----GD~A~maiiELVd 118 (118)
T 1gd8_A 81 DEIAPRYRDRQGGYTRVLKLAERRR-----GDGAPLALVELVE 118 (118)
T ss_dssp HTHHHHTSSCCSCCEEEEEEEEECT-----TTCCEEEEEEECC
T ss_pred HHHHHHhCCCCCCeEEEEECCCCCC-----CCCCCeEEEEecC
Confidence 999999999999999999999 998 9999999999996
No 5
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=100.00 E-value=8.3e-41 Score=280.68 Aligned_cols=103 Identities=29% Similarity=0.307 Sum_probs=97.9
Q ss_pred ccccccCCCCCCCcHHHHHHHHHHHHHHHhcCceEechhhHHhhc-------------cCChHHHHHHHHhccchhHHHH
Q psy14597 17 ILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWIEEKNIVHK 83 (191)
Q Consensus 17 ~~~~~R~~k~~~~~~hR~alLRnlvTsLikhERIeTT~~KAKElR-------------~~~~~t~r~a~~~L~ek~lv~K 83 (191)
|+|+++..|+|++++||++|||||+|+||+||||+||++||||+| ++|.+ |+|.+||.|+++|+|
T Consensus 90 MrH~~~~rKLgRtssHRkAmLRNLvtsLI~HeRI~TT~aKAKElR~~aEkLITlAK~gdlhaR--R~a~~~L~dk~~V~K 167 (205)
T 3bbo_P 90 MRHGRKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKR--RQALGFIYEKQIVHA 167 (205)
T ss_dssp CCTTCCSCCTTSCGGGHHHHHHHHHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHH--HHHHTTCCCTTHHHH
T ss_pred cCCccCCCCCCCChHHHHHHHHHHHHHHHhCCeEEecHHHHHHHHHHHHHHHhHhhcCChHHH--HHHHHHhCCHHHHHH
Confidence 578888888899999999999999999999999999999999999 45555 899999999999999
Q ss_pred HHhhhhhhcCCCCCCeeeEEecCCCCCCCCCCCCCceEEEEec
Q psy14597 84 LFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELR 126 (191)
Q Consensus 84 LF~~LaPRy~~R~GGYTRI~kl~~R~~~~~~gD~A~mAiLELv 126 (191)
||++|+|||++|+||||||+|+|+|. ||+|||||||||
T Consensus 168 LF~eiaPRY~dR~GGYTRIlKlg~R~-----GD~ApMAiIELV 205 (205)
T 3bbo_P 168 LFAEVPDRYGERNGGYTRIIRTLPRR-----GDNAPMAYIELV 205 (205)
T ss_dssp HTTSSGGGGSSCCSCCEECCBCSCCS-----SSCCCCEEEEEC
T ss_pred HHHHHHHHhCCCCCCeeEEEECCCCC-----CCCcceEEEEeC
Confidence 99999999999999999999999998 999999999997
No 6
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=23.10 E-value=5.1 Score=23.07 Aligned_cols=12 Identities=8% Similarity=0.088 Sum_probs=9.0
Q ss_pred CCCCCeeeEEec
Q psy14597 94 NTTVSYTRAYNA 105 (191)
Q Consensus 94 ~R~GGYTRI~kl 105 (191)
.|.|||.||.++
T Consensus 2 qrrggfrri~rl 13 (26)
T 1sy9_B 2 QRRGGFRRIARL 13 (26)
T ss_pred ccchhHHHHHHH
Confidence 467888888775
No 7
>2rmg_A Urocortin-2; CRF ligand, sauvagine, astressin, urotensins, CRF receptors, hormone, secreted; NMR {Synthetic}
Probab=15.55 E-value=1.9e+02 Score=18.05 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=21.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14597 140 SRLHIQNVLLDEAKKEYRAQKYAEIAQ 166 (191)
Q Consensus 140 ~~~~l~NvLl~~ar~e~~~~k~~~~~~ 166 (191)
-+-+|+|+|++-||.+-.++|.+.-+.
T Consensus 7 vp~~LL~~lle~Ar~~~~r~qAa~Na~ 33 (38)
T 2rmg_A 7 VPIGLLQILLEQARARAAREQATTNAR 33 (38)
T ss_dssp TTHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 356799999999999888888776665
No 8
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=13.73 E-value=59 Score=25.97 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=11.1
Q ss_pred CCCeeeEEecCCC
Q psy14597 96 TVSYTRAYNAPIP 108 (191)
Q Consensus 96 ~GGYTRI~kl~~R 108 (191)
.|||-||.|++..
T Consensus 63 GGGyIRI~kv~~~ 75 (155)
T 3h0d_A 63 GGGYIRIMKVKTK 75 (155)
T ss_dssp TTCEEEEEEEEEC
T ss_pred CCceEEEEEeccC
Confidence 6799999998764
No 9
>1yxb_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.60A {Streptomyces coelicolor} SCOP: a.204.1.4
Probab=13.71 E-value=65 Score=23.76 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=16.9
Q ss_pred hHHHHHHhhhhhhcCC--CCCCeee
Q psy14597 79 NIVHKLFKVLVPRFQN--TTVSYTR 101 (191)
Q Consensus 79 ~lv~KLF~~LaPRy~~--R~GGYTR 101 (191)
+.+..||.+|.-|..+ ..|+||.
T Consensus 4 ~~L~~L~~~I~~Rk~~~~pe~SYT~ 28 (98)
T 1yxb_A 4 KTFEELFTELQHKAANGDPATSRTA 28 (98)
T ss_dssp CCHHHHHHHHHHHTCC----CCSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCCcHHH
Confidence 3578899999999877 5678875
No 10
>2rmh_A Urocortin-3; CRF ligand, sauvagine, astressin2B, urotensins, CRF receptors, amidation, hormone, secreted; NMR {Synthetic}
Probab=11.67 E-value=2.9e+02 Score=17.19 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=17.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q psy14597 140 SRLHIQNVLLDEAKKEYRAQKYA 162 (191)
Q Consensus 140 ~~~~l~NvLl~~ar~e~~~~k~~ 162 (191)
-+-.|+|+|++-||.+-.+++.+
T Consensus 7 vp~~ll~~l~e~Ara~~~r~qAa 29 (38)
T 2rmh_A 7 VPTNIMNLLFNIAKAKNLRAQAA 29 (38)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999998877766654
Done!