Your job contains 1 sequence.
>psy14597
MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEA
RDTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFH
SVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQDLESRANADSSAKS
EELAQNNSQTP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14597
(191 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0035122 - symbol:mRpL17 "mitochondrial ribosomal p... 402 1.9e-37 1
UNIPROTKB|F1NHT8 - symbol:MRPL17 "Uncharacterized protein... 252 1.5e-21 1
ZFIN|ZDB-GENE-040912-133 - symbol:mrpl17 "mitochondrial r... 238 4.4e-20 1
UNIPROTKB|E2QYN8 - symbol:MRPL17 "Uncharacterized protein... 219 4.6e-18 1
UNIPROTKB|Q9NRX2 - symbol:MRPL17 "39S ribosomal protein L... 217 7.5e-18 1
MGI|MGI:1351608 - symbol:Mrpl17 "mitochondrial ribosomal ... 216 9.5e-18 1
RGD|70943 - symbol:Mrpl17 "mitochondrial ribosomal protei... 213 2.0e-17 1
UNIPROTKB|F1RMQ4 - symbol:MRPL17 "Uncharacterized protein... 212 2.5e-17 1
UNIPROTKB|Q3T0L3 - symbol:MRPL17 "39S ribosomal protein L... 202 2.9e-16 1
UNIPROTKB|E9PKV2 - symbol:MRPL17 "39S ribosomal protein L... 173 3.4e-13 1
UNIPROTKB|G3X875 - symbol:LOC506989 "Uncharacterized prot... 149 1.2e-10 1
WB|WBGene00021829 - symbol:mrpl-17 species:6239 "Caenorha... 132 4.1e-08 1
>FB|FBgn0035122 [details] [associations]
symbol:mRpL17 "mitochondrial ribosomal protein L17"
species:7227 "Drosophila melanogaster" [GO:0006412 "translation"
evidence=ISS] [GO:0005762 "mitochondrial large ribosomal subunit"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] InterPro:IPR000456 Pfam:PF01196 EMBL:AE014296
GO:GO:0006412 GO:GO:0005762 GO:GO:0003735 HSSP:Q9Z9H5
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263 CTD:63875
GeneTree:ENSGT00390000010698 eggNOG:NOG278728 OMA:DAIRYGD
EMBL:AY119639 EMBL:BT029976 EMBL:BT120114 RefSeq:NP_523870.2
UniGene:Dm.14476 SMR:Q9W0S6 MINT:MINT-977725 STRING:Q9W0S6
EnsemblMetazoa:FBtr0072503 EnsemblMetazoa:FBtr0310415 GeneID:38046
KEGG:dme:Dmel_CG13880 UCSC:CG13880-RA FlyBase:FBgn0035122
InParanoid:Q9W0S6 OrthoDB:EOG4M37RV GenomeRNAi:38046 NextBio:806707
Uniprot:Q9W0S6
Length = 176
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 88/179 (49%), Positives = 119/179 (66%)
Query: 1 MNQAEVTKLVSRLRIPILAKHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEA 60
MNQA+VTKL+S+LRI + R L+N +GP+GR+ KLR VTAL+K+ERIE+++ DEA
Sbjct: 1 MNQADVTKLMSQLRIAVRPNKRHLKNVDGPEGRLLKLRKTVTALVKHERIELFYNRADEA 60
Query: 61 R--------------DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAP 106
R D H+ TM++AD+W+ EK +VHKLFKVLVPR++ VSYTR Y AP
Sbjct: 61 RGYAELLISNAIRHGDRHQATMELADYWLLEKQLVHKLFKVLVPRYETYNVSYTRMYKAP 120
Query: 107 IPHATPEKSDLSFH-SVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEI 164
E + + SV+ELRGNP+P L +R + NVLLDEA+KE+R QK +E+
Sbjct: 121 -----REYPGIYYRRSVLELRGNPYPSLAADHSQNRNLLHNVLLDEARKEFRRQKLSEL 174
>UNIPROTKB|F1NHT8 [details] [associations]
symbol:MRPL17 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] InterPro:IPR000456 Pfam:PF01196 GO:GO:0005743
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059
GeneTree:ENSGT00390000010698 OMA:DEVRFYA EMBL:AADN02060538
IPI:IPI00811306 Ensembl:ENSGALT00000004103 Uniprot:F1NHT8
Length = 167
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 68/168 (40%), Positives = 94/168 (55%)
Query: 12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
RL + H R+ R GP+ R+ LR++VTAL+++ERIE DE R
Sbjct: 6 RLSLVAAISHGRVFRRLGRGPRSRLDLLRNLVTALVRHERIEAPWARADEMRGYAERLID 65
Query: 62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
DT + M MADFW+ EK+++HKLFKVL PRFQ SYTR + P + D
Sbjct: 66 YAKRGDTDERAMRMADFWLTEKDLIHKLFKVLAPRFQPHPGSYTRMLHIP----NRDSLD 121
Query: 117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYR--AQKYA 162
+ +VIEL+GNP+PPL++ DS + LL++ K YR AQ+ A
Sbjct: 122 RAKMAVIELKGNPYPPLIRPRRDS----EKTLLNQLLKGYREDAQRAA 165
>ZFIN|ZDB-GENE-040912-133 [details] [associations]
symbol:mrpl17 "mitochondrial ribosomal protein L17"
species:7955 "Danio rerio" [GO:0005840 "ribosome" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000456 Pfam:PF01196 ZFIN:ZDB-GENE-040912-133
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 eggNOG:COG0203
HOGENOM:HOG000019780 Gene3D:3.90.1030.10 PANTHER:PTHR14413
SUPFAM:SSF64263 TIGRFAMs:TIGR00059 CTD:63875
GeneTree:ENSGT00390000010698 HOVERGEN:HBG056029 OMA:DEVRFYA
OrthoDB:EOG41C6XH EMBL:FP102797 EMBL:BC081486 IPI:IPI00493770
RefSeq:NP_001004683.1 UniGene:Dr.85603 SMR:Q66I81 STRING:Q66I81
Ensembl:ENSDART00000113534 Ensembl:ENSDART00000149905 GeneID:447945
KEGG:dre:447945 NextBio:20832462 Uniprot:Q66I81
Length = 166
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 67/173 (38%), Positives = 97/173 (56%)
Query: 12 RLRIPILAKHRRLRNPEG--PQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
RL + L H R+ G P+ R+ LR+++T L+++ERIE DE R
Sbjct: 2 RLTLRALISHGRVARKMGLGPESRINILRNLLTGLVRHERIETGKARADEVRFYAEKLID 61
Query: 62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
DT ++ M MADFW+ EK+++ KLFKVL RF+N T YT A +P+ E D
Sbjct: 62 YAKKGDTDEKAMKMADFWLTEKDLIPKLFKVLAVRFENQTAGYTNM--ARLPNR--ENLD 117
Query: 117 LSFHSVIELRGNPFPPL--VQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQD 167
+ +V+E +GNPFPPL V+R S L++ N LL K YR +K A++A +
Sbjct: 118 RAAMAVLEYKGNPFPPLNPVKRV--SELNLVNQLL----KGYREEK-AQMATE 163
>UNIPROTKB|E2QYN8 [details] [associations]
symbol:MRPL17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000456 Pfam:PF01196
GO:GO:0005743 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 GeneTree:ENSGT00390000010698 OMA:DEVRFYA
EMBL:AAEX03012868 Ensembl:ENSCAFT00000010629 NextBio:20895767
Uniprot:E2QYN8
Length = 208
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 59/162 (36%), Positives = 88/162 (54%)
Query: 12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
RL + H R+ R GP+ R+ LR+++T L+++ERIE DE R
Sbjct: 38 RLSVAAAISHGRVFRRLGLGPESRIHLLRNLLTGLVRHERIEASWARVDEMRGYAEKLID 97
Query: 62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
DT+++ M MADFW+ EK+++ KLF+VL PR+Q YTR IP+ + K D
Sbjct: 98 YGKLGDTNEQAMRMADFWLTEKDLIPKLFQVLAPRYQGQNGGYTRMLQ--IPNRS--KQD 153
Query: 117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRA 158
+ +VIE +GN PPL DS L + N LL +++ +A
Sbjct: 154 RAKMAVIEYKGNCLPPLPLPRRDSNLTLLNQLLQGLQQDQKA 195
>UNIPROTKB|Q9NRX2 [details] [associations]
symbol:MRPL17 "39S ribosomal protein L17, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IPI] InterPro:IPR000456 Pfam:PF01196
PROSITE:PS01167 EMBL:CH471064 GO:GO:0005743 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 eggNOG:COG0203 HOGENOM:HOG000019780
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 OMA:LIMNERI CTD:63875 HOVERGEN:HBG056029
OrthoDB:EOG41C6XH EMBL:AF164797 EMBL:AF141338 EMBL:AK026857
EMBL:CR457177 EMBL:BC012306 EMBL:AB051620 IPI:IPI00172591
RefSeq:NP_071344.1 UniGene:Hs.523456 UniGene:Hs.708782 PDB:2CQM
PDBsum:2CQM ProteinModelPortal:Q9NRX2 SMR:Q9NRX2 STRING:Q9NRX2
PhosphoSite:Q9NRX2 DMDM:74752931 PaxDb:Q9NRX2 PeptideAtlas:Q9NRX2
PRIDE:Q9NRX2 DNASU:63875 Ensembl:ENST00000288937 GeneID:63875
KEGG:hsa:63875 UCSC:uc001men.2 GeneCards:GC11M006659
HGNC:HGNC:14053 HPA:HPA043666 HPA:HPA050552 MIM:611830
neXtProt:NX_Q9NRX2 PharmGKB:PA30946 InParanoid:Q9NRX2
EvolutionaryTrace:Q9NRX2 GenomeRNAi:63875 NextBio:65556
ArrayExpress:Q9NRX2 Bgee:Q9NRX2 CleanEx:HS_MRPL17
Genevestigator:Q9NRX2 GermOnline:ENSG00000158042 Uniprot:Q9NRX2
Length = 175
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 58/166 (34%), Positives = 91/166 (54%)
Query: 12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
RL + H R+ R GP+ R+ LR+++T L+++ERIE DE R
Sbjct: 2 RLSVAAAISHGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLID 61
Query: 62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
DT++ M MADFW+ EK+++ KLF+VL PR+++ T YTR IP+ + +++
Sbjct: 62 YGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQ--IPNRSLDRAK 119
Query: 117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYA 162
++ VIE +GN PPL DS L + N LL +++ R + A
Sbjct: 120 MA---VIEYKGNCLPPLPLPRRDSHLTLLNQLLQGLRQDLRQSQEA 162
>MGI|MGI:1351608 [details] [associations]
symbol:Mrpl17 "mitochondrial ribosomal protein L17"
species:10090 "Mus musculus" [GO:0000002 "mitochondrial genome
maintenance" evidence=TAS] [GO:0003735 "structural constituent of
ribosome" evidence=ISA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005743
"mitochondrial inner membrane" evidence=IDA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=ISA]
[GO:0019904 "protein domain specific binding" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167 MGI:MGI:1351608
GO:GO:0005743 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735
GO:GO:0000002 eggNOG:COG0203 HOGENOM:HOG000019780
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
TIGRFAMs:TIGR00059 CTD:63875 GeneTree:ENSGT00390000010698
HOVERGEN:HBG056029 OMA:DEVRFYA OrthoDB:EOG41C6XH EMBL:AK007828
EMBL:AK144092 EMBL:AK147957 EMBL:BC010718 IPI:IPI00111784
IPI:IPI00473469 RefSeq:NP_079577.1 UniGene:Mm.44225
ProteinModelPortal:Q9D8P4 SMR:Q9D8P4 STRING:Q9D8P4
PhosphoSite:Q9D8P4 PaxDb:Q9D8P4 PRIDE:Q9D8P4
Ensembl:ENSMUST00000124482 GeneID:27397 KEGG:mmu:27397
UCSC:uc009izl.1 UCSC:uc009izm.1 InParanoid:Q9D8P4 NextBio:305376
Bgee:Q9D8P4 CleanEx:MM_MRPL17 Genevestigator:Q9D8P4
GermOnline:ENSMUSG00000030879 Uniprot:Q9D8P4
Length = 176
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 58/153 (37%), Positives = 81/153 (52%)
Query: 12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
RL + H R+ R GP+ R+ LR+++T L+++ERIE DE R
Sbjct: 2 RLSLAAAISHGRVYRRLGLGPESRIHLLRNLLTGLVRHERIEATWARADEMRGYAEKLID 61
Query: 62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
DT++ M MADFW+ EK+++ KLFKVL PRFQ +YTR P ++ D
Sbjct: 62 YGKLGDTNERAMRMADFWLTEKDLIPKLFKVLAPRFQGQNGNYTRMLQIP----NRKEQD 117
Query: 117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLL 149
+ +VIE +GN PPL DS L + N LL
Sbjct: 118 RAKMAVIEYKGNYLPPLPLPHRDSNLTLLNQLL 150
>RGD|70943 [details] [associations]
symbol:Mrpl17 "mitochondrial ribosomal protein L17" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISO] [GO:0005743
"mitochondrial inner membrane" evidence=IEA;ISO] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA;ISO]
InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167 RGD:70943
GO:GO:0005743 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0203 HOGENOM:HOG000019780 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059 CTD:63875
GeneTree:ENSGT00390000010698 HOVERGEN:HBG056029 OMA:DEVRFYA
OrthoDB:EOG41C6XH EMBL:BC058447 EMBL:U53512 IPI:IPI00189035
RefSeq:NP_598223.1 UniGene:Rn.40354 ProteinModelPortal:Q6PDW6
SMR:Q6PDW6 STRING:Q6PDW6 PRIDE:Q6PDW6 Ensembl:ENSRNOT00000050562
GeneID:171061 KEGG:rno:171061 UCSC:RGD:70943 InParanoid:Q6PDW6
NextBio:621641 Genevestigator:Q6PDW6 GermOnline:ENSRNOG00000019497
Uniprot:Q6PDW6
Length = 176
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 58/153 (37%), Positives = 81/153 (52%)
Query: 12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
RL + H R+ R GP+ R+ LR+++T L+++ERIE DE R
Sbjct: 2 RLSLAAAISHGRVYRRLGLGPESRIHLLRNLLTGLVRHERIEATWARVDEMRGYAEKLID 61
Query: 62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
DT++ M MADFW+ EK+++ KLFKVL PRFQ +YTR P ++ D
Sbjct: 62 YGKLGDTNERAMRMADFWLTEKDLIPKLFKVLAPRFQGQNGNYTRMLQIP----NRKEQD 117
Query: 117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLL 149
+ +VIE +GN PPL DS L + N LL
Sbjct: 118 RAKMAVIEYKGNCLPPLPLPHRDSNLTLLNQLL 150
>UNIPROTKB|F1RMQ4 [details] [associations]
symbol:MRPL17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0005743 "mitochondrial inner membrane" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000456 Pfam:PF01196 GO:GO:0005743
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059 CTD:63875
GeneTree:ENSGT00390000010698 OMA:DEVRFYA EMBL:FP565445
RefSeq:NP_001231309.1 UniGene:Ssc.43194 Ensembl:ENSSSCT00000026864
GeneID:100512482 KEGG:ssc:100512482 Uniprot:F1RMQ4
Length = 169
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 57/165 (34%), Positives = 84/165 (50%)
Query: 12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
RL + H R+ R GP+ R+ L++++T L+++ERIE DE R
Sbjct: 2 RLSVAAAISHGRVFRRLGLGPESRIHLLQNLLTGLVRHERIEASWARVDELRGYAEKLID 61
Query: 62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
DT++ M MADFW+ EK+++ KLF+VL PRFQ YTR P + D
Sbjct: 62 YGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRFQGQNGGYTRMLQIP----NRNEQD 117
Query: 117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKY 161
+ +VIE +GN PPL DS L + N LL +++ A +
Sbjct: 118 RAKMAVIEYKGNCLPPLPLPRRDSNLTLLNQLLQGLRQDQEASSH 162
>UNIPROTKB|Q3T0L3 [details] [associations]
symbol:MRPL17 "39S ribosomal protein L17, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000456 Pfam:PF01196 PROSITE:PS01167
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0203 HOGENOM:HOG000019780 Gene3D:3.90.1030.10
PANTHER:PTHR14413 SUPFAM:SSF64263 TIGRFAMs:TIGR00059 PDB:2FTC
PDBsum:2FTC EMBL:BC102348 IPI:IPI00708783 RefSeq:NP_001029446.1
UniGene:Bt.49032 ProteinModelPortal:Q3T0L3 SMR:Q3T0L3 STRING:Q3T0L3
PRIDE:Q3T0L3 Ensembl:ENSBTAT00000034505 GeneID:506988
KEGG:bta:506988 CTD:63875 GeneTree:ENSGT00390000010698
HOVERGEN:HBG056029 InParanoid:Q3T0L3 OMA:DEVRFYA OrthoDB:EOG41C6XH
EvolutionaryTrace:Q3T0L3 NextBio:20867842 Uniprot:Q3T0L3
Length = 172
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 56/162 (34%), Positives = 82/162 (50%)
Query: 12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------- 61
RL H R+ R GP+ R+ L++++T L+++ERIE DE R
Sbjct: 2 RLSFAAAISHGRVYRRLGLGPESRIHLLQNLLTGLVRHERIEASWARVDELRGYAEKLID 61
Query: 62 -----DTHKETMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSD 116
DT++ M MADFW+ EK+++ KLF+VL PR+Q YTR P + D
Sbjct: 62 YGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYQGQNGGYTRMLQIP----NRNQQD 117
Query: 117 LSFHSVIELRGNPFPPLVQRAVDSRLHIQNVLLDEAKKEYRA 158
+ +VIE +GN PPL DS L + N LL +++ A
Sbjct: 118 RAKMAVIEYKGNCLPPLPLPRRDSNLTLLNQLLRGLRQDQEA 159
>UNIPROTKB|E9PKV2 [details] [associations]
symbol:MRPL17 "39S ribosomal protein L17, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000456
Pfam:PF01196 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AC091564 Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
HGNC:HGNC:14053 IPI:IPI00982310 ProteinModelPortal:E9PKV2
SMR:E9PKV2 Ensembl:ENST00000532203 ArrayExpress:E9PKV2 Bgee:E9PKV2
Uniprot:E9PKV2
Length = 142
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 51/153 (33%), Positives = 83/153 (54%)
Query: 12 RLRIPILAKHRRL--RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARDTHKETMD 69
RL + H R+ R GP+ R+ LR+++T L+++ERIE DE R + E
Sbjct: 2 RLSVAAAISHGRVFRRMGLGPESRIHLLRNLLTGLVRHERIEAPWARVDEMRG-YAE--- 57
Query: 70 MADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNP 129
+EK+++ KLF+VL PR+++ T YTR IP+ + +++ ++ VIE +GN
Sbjct: 58 ------KEKDLIPKLFQVLAPRYKDQTGGYTRMLQ--IPNRSLDRAKMA---VIEYKGNC 106
Query: 130 FPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYA 162
PPL DS L + N LL +++ R + A
Sbjct: 107 LPPLPLPRRDSHLTLLNQLLQGLRQDLRQSQEA 139
>UNIPROTKB|G3X875 [details] [associations]
symbol:LOC506989 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000456 Pfam:PF01196
GO:GO:0005743 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
GeneTree:ENSGT00390000010698 EMBL:DAAA02040848 UniGene:Bt.64113
Ensembl:ENSBTAT00000053590 OMA:HVAPISA Uniprot:G3X875
Length = 121
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 36/105 (34%), Positives = 55/105 (52%)
Query: 68 MDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRG 127
M MADFW+ EK+++ KLF+VL PR+Q YTR P P + D + +VIE +
Sbjct: 1 MRMADFWLTEKDLIPKLFQVLAPRYQGQNGGYTRMLQIP----NPNQQDRAKMAVIEYKV 56
Query: 128 NPFPPLVQRAVDSRLHIQNVLLDEAKKEYRAQKYAEIAQDLESRA 172
N P+ +R DS L + N LL + K+ ++ +R+
Sbjct: 57 NCLLPIARR--DSNLTLLNQLLQGLRAAGPGSKHPQLPPSSNTRS 99
>WB|WBGene00021829 [details] [associations]
symbol:mrpl-17 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR000456 Pfam:PF01196
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:FO081614 Gene3D:3.90.1030.10 PANTHER:PTHR14413 SUPFAM:SSF64263
GeneTree:ENSGT00390000010698 RefSeq:NP_491114.2
ProteinModelPortal:Q9N3F3 SMR:Q9N3F3 STRING:Q9N3F3 PaxDb:Q9N3F3
EnsemblMetazoa:Y54E10A.7.1 EnsemblMetazoa:Y54E10A.7.2 GeneID:171889
KEGG:cel:CELE_Y54E10A.7 UCSC:Y54E10A.7 CTD:171889
WormBase:Y54E10A.7 eggNOG:NOG278728 HOGENOM:HOG000199541
InParanoid:Q9N3F3 OMA:DAIRYGD NextBio:873123 Uniprot:Q9N3F3
Length = 194
Score = 132 (51.5 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 41/147 (27%), Positives = 72/147 (48%)
Query: 31 QGRVKKLRSIVTALLKYERIEVYHYDGDEARD--------------THKETMDMADFWIE 76
+ R++ LR IVT ++ ER E+ EAR + T +M ++W+
Sbjct: 34 RARLEVLRRIVTRTVREERAELKWNRAVEARPYLERLIQLGVERGPLDEYTAEMMEWWLP 93
Query: 77 EKNIVHKLFKVLVPRFQNTTVSYTRAYNAP---IPHATPEKSDLSFH---SVIELRGNPF 130
EK+++ K+ +V+VPRFQ+ +T + P + K ++ V+E+ GNPF
Sbjct: 94 EKDLITKMHEVIVPRFQDRDSPFTSLFRLPPQRLQQFIQNKREVWKRYDIGVLEIDGNPF 153
Query: 131 PPLVQRAVDSRLHIQNVLLDEAKKEYR 157
P + VD I +VLL +A + ++
Sbjct: 154 PQIQADRVDQSESILDVLLADALRNHQ 180
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.366 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 191 191 0.00094 110 3 11 22 0.48 32
31 0.43 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 559 (59 KB)
Total size of DFA: 147 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.37u 0.08s 21.45t Elapsed: 00:00:26
Total cpu time: 21.37u 0.08s 21.45t Elapsed: 00:00:26
Start: Thu Aug 15 10:54:13 2013 End: Thu Aug 15 10:54:39 2013