RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14597
(191 letters)
>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 66.9 bits (163), Expect = 2e-15
Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 18/112 (16%)
Query: 37 LRSIVTALLKYERIEVYHYDGDEAR-------------DTHKETMDMADFWIEEKNIVHK 83
LR+++T L+++ERIE DE R DT++ M MADFW+ EK+++ K
Sbjct: 2 LRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPK 61
Query: 84 LFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIELRGNPFPPLVQ 135
LF+VL PR+++ T YTR P D + +VIE +GN PPL
Sbjct: 62 LFQVLAPRYKDQTGGYTRMLQIP-----NRSLDRAKMAVIEYKGNCLPPLPL 108
>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17
{Deinococcus radiodurans [TaxId: 1299]}
Length = 113
Score = 52.1 bits (125), Expect = 8e-10
Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 22/119 (18%)
Query: 20 KHRRLRNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEAR-------------DTHKE 66
R+L RV R+ TALL+ RI+ E R D H
Sbjct: 4 AGRKLNRN--SSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSR 61
Query: 67 TMDMADFWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIEL 125
+ D +K++V K+ + P++ YTR + D ++IEL
Sbjct: 62 RLVAQDIH--DKDVVRKVMDEVAPKYAERPGGYTRILRVG-----TRRGDGVTMALIEL 113
>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus
thermophilus [TaxId: 274]}
Length = 105
Score = 50.7 bits (121), Expect = 2e-09
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 15/104 (14%)
Query: 33 RVKKLRSIVTALLKYERIEVYHYDGDEARDTHKETMDMA-----------DFWIEEKNIV 81
R+ R+ +LL + RI E R + +A +++ +V
Sbjct: 4 RLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLV 63
Query: 82 HKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIEL 125
KLF + PR+++ YTR + D + +++EL
Sbjct: 64 RKLFDEIAPRYRDRQGGYTRVLKLA----ERRRGDGAPLALVEL 103
>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17
{Escherichia coli [TaxId: 562]}
Length = 120
Score = 41.4 bits (97), Expect = 7e-06
Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 20/118 (16%)
Query: 20 KHRRL-RNPEGPQGRVKKLRSIVTALLKYERIEVYHYDGDEARDTHKETMDMAD------ 72
R+L RN R R++ +L+++E I+ E R + + +A
Sbjct: 6 SGRQLNRNSSH---RQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVAN 62
Query: 73 -----FWIEEKNIVHKLFKVLVPRFQNTTVSYTRAYNAPIPHATPEKSDLSFHSVIEL 125
+ IV KLF L PRF + YTR D + + IEL
Sbjct: 63 RRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCG-----FRAGDNAPMAYIEL 115
>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F
(AhpF), N-terminal domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 102
Score = 27.7 bits (62), Expect = 0.36
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 148 LLDEAKKEYRAQKYAEIAQDLESRANADSSAKSEELAQ 185
+LD K ++ + +E A D SAKS E+ +
Sbjct: 1 MLDTNMKTQLRAYLEKLTKPVELIATLDDSAKSAEIKE 38
>d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain
of HMG-CoA reductase {Human (Homo sapiens) [TaxId:
9606]}
Length = 292
Score = 28.7 bits (64), Expect = 0.40
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 1 MNQAEVTKLVSRLRIPILAKHRRLRNPE-GPQGRVKKLRSIVTALLKYERIEVYHYDGDE 59
++ AE+ +LV+ IP + E G R + L ++ + + Y+
Sbjct: 1 LSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSL 60
Query: 60 ARDTHKE 66
E
Sbjct: 61 VMGACCE 67
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA
polymerases {Archaeon Thermococcus gorgonarius [TaxId:
71997]}
Length = 347
Score = 28.2 bits (62), Expect = 0.62
Identities = 11/56 (19%), Positives = 27/56 (48%)
Query: 36 KLRSIVTALLKYERIEVYHYDGDEARDTHKETMDMADFWIEEKNIVHKLFKVLVPR 91
L ++ A+ + +VY + +A +T + +A + +E+ + ++L K P
Sbjct: 274 TLEAVYEAIFGQPKEKVYAEEIAQAWETGEGLERVARYSMEDAKVTYELGKEFFPM 329
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 26.3 bits (57), Expect = 3.0
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 23 RLRNPEGPQGRVKKL-RSIVTALLKYERIEVYHYDGDEARD-THKETMDMADFWIEEKNI 80
N GP +KL ++ L+ + + +Y GD+ RD + E A + +
Sbjct: 193 NCSNNYGPYHFPEKLIPLVILNALEGKPLPIYG-KGDQIRDWLYVEDHARALHMVVTEGK 251
Query: 81 VHKLFKV 87
+ + +
Sbjct: 252 AGETYNI 258
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptomyces venezuelae [TaxId: 54571]}
Length = 322
Score = 25.5 bits (55), Expect = 4.2
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 23 RLRNPEGPQGRVKKL-RSIVTALLKYERIEVYHYDGDEARD 62
R N GP +KL VT LL + +Y DG R+
Sbjct: 177 RCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYG-DGANVRE 216
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId:
562]}
Length = 174
Score = 24.7 bits (54), Expect = 6.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 144 IQNVLLDEAKKEYRAQKYAEI------AQDLESRANADSSAKSEELAQN 186
I+NV +EA K Y +KY A+D + A A S K +++ N
Sbjct: 37 IRNV--EEALKTY--EKYRADINKKINAKDRAAIAAALESVKLSDISSN 81
>d1ulea_ b.29.1.3 (A:) Galectin-2 {Inky cap fungus (Coprinopsis
cinerea) [TaxId: 5346]}
Length = 150
Score = 24.4 bits (53), Expect = 8.0
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 103 YNAPIPHATPEKSDLSFHSVIELRGNPFPPLVQRAVDSRLH 143
Y+ + + ++D SV +R + F V + L
Sbjct: 3 YHLFVNNQVKLQNDFKPESVAAIRSSAFNSKGGTTVFNFLS 43
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 199
Score = 24.4 bits (53), Expect = 8.4
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 10/49 (20%)
Query: 144 IQNVLLDEAKKEYRAQKYAEI------AQDLESRANADSSAKSEELAQN 186
I++ D+A K A D E+ NA + +E++
Sbjct: 51 IRSY--DDAMSSI--NKLMANPSLKINATDKEAIVNAWKAFNAEDMGNK 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.366
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 672,102
Number of extensions: 30107
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 21
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)