BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy146
         (253 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VU4|A Chain A, Structure Of Psbp Protein From Spinacia Oleracea At 1.98 A
           Resolution
          Length = 190

 Score = 32.7 bits (73), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 18  PESFNPIREKEFRNMVVWLEDQKIRIYKIEDRAELRKLESPHWMNSFHQYCTDVGLPITL 77
           P  +NP +EKEF   V+  ED        +  + L  L  P    S     TD G P   
Sbjct: 35  PSKWNPSKEKEFPGQVLRYEDN------FDATSNLSVLVQPTDKKS----ITDFGSPEDF 84

Query: 78  LSTPLEQIEWLLGHASRLEYADNVDQYKSQTAEFVSSNQSSAPKV 122
           LS    Q+++LLG  +     D+   + S      +  +SS P V
Sbjct: 85  LS----QVDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPVV 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,533,558
Number of Sequences: 62578
Number of extensions: 300216
Number of successful extensions: 772
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 15
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)