Query psy146
Match_columns 253
No_of_seqs 94 out of 96
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 15:49:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10036 RLL: Putative carniti 100.0 1.3E-95 3E-100 657.2 24.2 245 5-253 1-249 (249)
2 KOG4380|consensus 100.0 4.5E-86 9.8E-91 568.1 17.1 244 5-253 1-244 (244)
3 PF10239 DUF2465: Protein of u 96.7 0.026 5.6E-07 53.3 11.8 136 10-172 5-168 (318)
4 KOG3973|consensus 91.9 13 0.00028 36.1 18.7 153 9-178 11-179 (465)
5 PF03801 Ndc80_HEC: HEC/Ndc80p 80.8 8.5 0.00018 32.7 7.5 81 8-98 47-145 (157)
6 PF15433 MRP-S31: Mitochondria 69.5 8.7 0.00019 36.2 5.0 63 6-76 188-252 (298)
7 PF15142 INCA1: INCA1 49.0 13 0.00028 31.9 2.1 19 216-234 106-124 (178)
8 COG5201 SKP1 SCF ubiquitin lig 46.7 43 0.00094 28.3 4.8 66 4-71 24-94 (158)
9 PF04361 DUF494: Protein of un 38.4 73 0.0016 27.1 5.2 72 4-95 24-111 (155)
10 smart00843 Ftsk_gamma This dom 33.4 26 0.00056 25.6 1.4 29 1-41 20-48 (63)
11 PF10234 Cluap1: Clusterin-ass 31.6 34 0.00073 31.8 2.2 26 11-36 1-29 (267)
12 COG3747 Phage terminase, small 28.5 50 0.0011 28.4 2.5 32 10-41 33-64 (160)
13 PF09762 KOG2701: Coiled-coil 27.9 1E+02 0.0022 27.0 4.4 88 6-96 5-106 (182)
14 PF00034 Cytochrom_C: Cytochro 27.0 53 0.0011 22.9 2.2 16 25-40 76-91 (91)
15 PRK03430 hypothetical protein; 26.5 2.1E+02 0.0044 24.6 5.9 66 5-86 25-108 (157)
16 PF10498 IFT57: Intra-flagella 26.0 2.6E+02 0.0055 27.0 7.2 86 4-95 2-116 (359)
17 KOG3711|consensus 24.5 56 0.0012 33.4 2.4 30 213-242 164-193 (719)
18 PHA03252 DNA packaging tegumen 22.3 43 0.00093 34.5 1.2 38 209-246 188-225 (589)
19 PF14769 CLAMP: Flagellar C1a 21.0 1E+02 0.0022 23.8 2.9 43 4-46 43-86 (101)
20 PRK14456 ribosomal RNA large s 20.3 88 0.0019 30.2 2.8 64 13-77 281-347 (368)
21 PF10281 Ish1: Putative stress 20.1 1.9E+02 0.0041 18.4 3.5 24 62-85 7-31 (38)
No 1
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=100.00 E-value=1.3e-95 Score=657.21 Aligned_cols=245 Identities=55% Similarity=0.882 Sum_probs=226.2
Q ss_pred hHHHHHhhhCCCCCCCCCCCCHHHHHHHHHHHhhchhccCCccchhhhcCCCCccHHHHHHHHHhhcCCCCCCCCChHHH
Q psy146 5 NIIRKLKTLGYASPESFNPIREKEFRNMVVWLEDQKIRIYKIEDRAELRKLESPHWMNSFHQYCTDVGLPITLLSTPLEQ 84 (253)
Q Consensus 5 m~~rkL~aL~Y~~~~~~n~~d~~efr~lI~WLEdqkIR~y~iedR~~Lr~i~s~~W~~~~~kYl~dl~cP~~~~~~~~~~ 84 (253)
||+|||+|||||++++||++|++|||+||+|||||||||||||+|++||+++|++|+++|+|||+|++||++..+ ++++
T Consensus 1 m~~rkL~aL~Yp~~~~~n~~d~~~fr~lVvWLEDqKIR~Y~iedR~~LR~i~s~~W~~~~~kYl~dl~cP~~~~~-~~~~ 79 (249)
T PF10036_consen 1 MFRRKLKALGYPKPDSFNIDDEEEFRSLVVWLEDQKIRHYKIEDREKLRNIDSSDWPKAFEKYLKDLGCPFSSES-RQEQ 79 (249)
T ss_pred CcHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhhhhhccCCHhhHHHHhcCCcchHHHHHHHHHHhcCCCCcchh-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998888 9999
Q ss_pred HHHHHHHHHHHHHhhchHHhhhhhHHhh---hhcCCCCCCccCCCCCCCCCCCChHHHHHHHHHHHHhCCCCCCChhHHH
Q psy146 85 IEWLLGHASRLEYADNVDQYKSQTAEFV---SSNQSSAPKVVSTNPLDNLNFDSPEFKKGVNSLAEKLKIRPHPNHLTTL 161 (253)
Q Consensus 85 ldWLl~~AV~leY~D~~~~y~~~~~~~~---~~~~~~~~~~~~~~~l~~ld~~s~~f~~gv~~La~~L~I~~hpD~lv~L 161 (253)
||||||+||++||+|++ |....+... .+.+...+..++++|++++||+|++|++||++||++||||+||||+|+|
T Consensus 80 ldWLL~~AV~leY~Dn~--~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ld~~s~~f~~gv~~La~lL~i~~h~d~~v~l 157 (249)
T PF10036_consen 80 LDWLLGLAVRLEYKDNA--YDDDSSYKSAKEEQNKETSPQCKSTNPLDNLDFNSPEFKAGVRALASLLQIPRHPDHLVTL 157 (249)
T ss_pred HHHHHHHHHHHHHhccc--cccccccccchhhhcccccccccccCcccccCCCCHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 99999999999999999 222222211 1122356677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcChhhhcCCCcCCCCCCCCCccc-CCCCCCCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhc
Q psy146 162 EACCKLISARLNEDALAHPEFVIPKGKPFPFLE-IDNGFTLPDPVLNKAAKILNLLYIHDLRDLQTKINEAIVAVQTVTA 240 (253)
Q Consensus 162 ~A~~~~i~~~l~~~a~~~~~~~~~~g~~~~l~~-~~lGf~~~D~~l~~aa~iLRLL~I~~LR~LQt~INe~IVaVQ~lTA 240 (253)
+|||++|+++|++++++++..+. .|.|+.... |++||++||++|++||+|||||||++||+|||+|||+||+||+|||
T Consensus 158 ~a~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~~~lG~~~~d~~~~~aa~iLRlL~i~~LR~lQt~Ine~iv~vQ~~Ta 236 (249)
T PF10036_consen 158 KAACKLIKEKLSPEAISEANIEQ-SGKPFLDDKLFPLGFDVKDPALNEAARILRLLHIEDLRELQTKINETIVAVQNLTA 236 (249)
T ss_pred HHHHHHHHHHhchhhhccccccc-cCCcccccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999877665 488888666 9999999999999999999999999999999999999999999999
Q ss_pred CCccccccccCCC
Q psy146 241 NPKTDTKLGKVGF 253 (253)
Q Consensus 241 dPkTD~kLGKVGr 253 (253)
|||||+|||||||
T Consensus 237 dPktD~~LGkVGr 249 (249)
T PF10036_consen 237 DPKTDTKLGKVGR 249 (249)
T ss_pred CCcccccccccCC
Confidence 9999999999998
No 2
>KOG4380|consensus
Probab=100.00 E-value=4.5e-86 Score=568.05 Aligned_cols=244 Identities=47% Similarity=0.730 Sum_probs=235.4
Q ss_pred hHHHHHhhhCCCCCCCCCCCCHHHHHHHHHHHhhchhccCCccchhhhcCCCCccHHHHHHHHHhhcCCCCCCCCChHHH
Q psy146 5 NIIRKLKTLGYASPESFNPIREKEFRNMVVWLEDQKIRIYKIEDRAELRKLESPHWMNSFHQYCTDVGLPITLLSTPLEQ 84 (253)
Q Consensus 5 m~~rkL~aL~Y~~~~~~n~~d~~efr~lI~WLEdqkIR~y~iedR~~Lr~i~s~~W~~~~~kYl~dl~cP~~~~~~~~~~ 84 (253)
||||||+||+|++|-.|++.|+.|||++||||||||||||+++||+.|+++.|++|+..|+||+.|+||||+..+ |+++
T Consensus 1 M~RRKL~A~~Y~~~~~~~~~D~~E~R~~IV~~E~~~ir~~~~~~~~~m~~~~~s~W~~~~EKY~~~~~~P~~~~~-R~~A 79 (244)
T KOG4380|consen 1 MFRRKLTALDYHNPAGFNCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLRDVNCPFKIQD-RQEA 79 (244)
T ss_pred CcccccchhcccCcccccCcchHHHHHHheehhhhhhhhhchhhhhhhcccccccchHHHHHHHHHcCCCccccc-HHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred HHHHHHHHHHHHHhhchHHhhhhhHHhhhhcCCCCCCccCCCCCCCCCCCChHHHHHHHHHHHHhCCCCCCChhHHHHHH
Q psy146 85 IEWLLGHASRLEYADNVDQYKSQTAEFVSSNQSSAPKVVSTNPLDNLNFDSPEFKKGVNSLAEKLKIRPHPNHLTTLEAC 164 (253)
Q Consensus 85 ldWLl~~AV~leY~D~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~ld~~s~~f~~gv~~La~~L~I~~hpD~lv~L~A~ 164 (253)
+|||||.||+++|+|++++|+.+.++..+ ..++..++++||++||++||+|++|+++||++|||++||||+|||+|+
T Consensus 80 ID~~L~~AV~~~Y~~~~~~~~~~~~~~~K---~~~~~~~~~~PL~~LD~~~P~F~~~~~AL~~iL~I~~H~D~~VmmKA~ 156 (244)
T KOG4380|consen 80 IDWLLGLAVRLEYGDNAEKYKDLVPDNSK---TADNATKNAEPLINLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAI 156 (244)
T ss_pred HHHHHHHHHHHHHHhcccchhhhhhhhHH---HHHhhhcccCchhhcCCCCccHHHHHHHHHHHhccccCCCHHHHHHHH
Confidence 99999999999999999999988666433 377889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcChhhhcCCCcCCCCCCCCCcccCCCCCCCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCcc
Q psy146 165 CKLISARLNEDALAHPEFVIPKGKPFPFLEIDNGFTLPDPVLNKAAKILNLLYIHDLRDLQTKINEAIVAVQTVTANPKT 244 (253)
Q Consensus 165 ~~~i~~~l~~~a~~~~~~~~~~g~~~~l~~~~lGf~~~D~~l~~aa~iLRLL~I~~LR~LQt~INe~IVaVQ~lTAdPkT 244 (253)
|.+|+++|..+++++++++++ |.|..++.+.+||++||+++++||+|||||||++||++||+|||+||+||+|||||||
T Consensus 157 ~i~i~E~L~~D~iA~~~~~~~-~~~~~L~~~I~~~~~~~~~~~~sA~iLRLi~i~~LR~~~~~INE~iV~iQ~i~~D~r~ 235 (244)
T KOG4380|consen 157 RILVQERLTQDAVAKANQTKE-GLPVALDKHILGFDTGDAVLNEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKT 235 (244)
T ss_pred HHHHHHHhhhHHHHHhHHHHh-cCcceecccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 999999999999999888885 9999999988889999999999999999999999999999999999999999999999
Q ss_pred ccccccCCC
Q psy146 245 DTKLGKVGF 253 (253)
Q Consensus 245 D~kLGKVGr 253 (253)
|+|+|||||
T Consensus 236 D~r~~~~GR 244 (244)
T KOG4380|consen 236 DHRLGKVGR 244 (244)
T ss_pred hhhhhccCC
Confidence 999999998
No 3
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=96.67 E-value=0.026 Score=53.27 Aligned_cols=136 Identities=20% Similarity=0.363 Sum_probs=84.9
Q ss_pred HhhhCCCCCCC----------CCCCCHHHHHHHHHHHhhchhccCCccchhhhcCCCCc-cHHHHHHHHHhhcCCCCCCC
Q psy146 10 LKTLGYASPES----------FNPIREKEFRNMVVWLEDQKIRIYKIEDRAELRKLESP-HWMNSFHQYCTDVGLPITLL 78 (253)
Q Consensus 10 L~aL~Y~~~~~----------~n~~d~~efr~lI~WLEdqkIR~y~iedR~~Lr~i~s~-~W~~~~~kYl~dl~cP~~~~ 78 (253)
|.+|||..|-- --+++. +|+.||.||=.+---+|++++. ....+.. .+--.+..+|++++||...-
T Consensus 5 L~~lgY~gpl~~e~~l~~a~~~G~~s~-~f~~L~~wL~~EL~~l~~leE~--v~~~dd~~~f~~Els~~L~El~CPy~~L 81 (318)
T PF10239_consen 5 LEDLGYKGPLLEEQALSKALEAGASSP-EFRELCAWLASELKTLCKLEES--VSSPDDAESFLLELSGFLKELGCPYSAL 81 (318)
T ss_pred HHHcCCCCCCcCHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHHhccccc--cCCCchHHHHHHHHHHHHHhcCCCcHHH
Confidence 78999966510 123344 8999999999998889999765 3333332 27778899999999997521
Q ss_pred C------------ChHHHHHHHHHH--HHHHHHhhchHHhhhhhHHhhhhcCCCCCCccCCCCCCCCCCCChHHHHHHHH
Q psy146 79 S------------TPLEQIEWLLGH--ASRLEYADNVDQYKSQTAEFVSSNQSSAPKVVSTNPLDNLNFDSPEFKKGVNS 144 (253)
Q Consensus 79 ~------------~~~~~ldWLl~~--AV~leY~D~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~ld~~s~~f~~gv~~ 144 (253)
. ++...++||++. |.++.-...... +... - +- ..+....+..
T Consensus 82 ~~G~~~~rl~~~~~~l~LL~fL~sELqaarl~~~k~~~~----------------~~~~----~---~~-~s~~~~~l~~ 137 (318)
T PF10239_consen 82 TSGDISDRLQSKEDRLLLLEFLCSELQAARLLAKKKPEE----------------PEQE----E---EK-ESEVAQELKA 137 (318)
T ss_pred cCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHhccCCc----------------cccc----c---cc-ccHHHHHHHH
Confidence 1 145567777764 222222211110 0000 0 00 3455568999
Q ss_pred HHHHhCCCCCCC---hhHHHHHHHHHHHHhc
Q psy146 145 LAEKLKIRPHPN---HLTTLEACCKLISARL 172 (253)
Q Consensus 145 La~~L~I~~hpD---~lv~L~A~~~~i~~~l 172 (253)
++..||++.+|. ...+|..+..-|.+.|
T Consensus 138 i~~~L~l~~p~~~i~~~~lf~~i~~ki~~~L 168 (318)
T PF10239_consen 138 ICQALGLPKPPPNITASQLFSKIEAKIEELL 168 (318)
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999998853 3446777766665555
No 4
>KOG3973|consensus
Probab=91.89 E-value=13 Score=36.10 Aligned_cols=153 Identities=18% Similarity=0.289 Sum_probs=80.8
Q ss_pred HHhhhCCCCCCC----------CCCCCHHHHHHHHHHHhhchhccCCccchhhhcCCCCc---cHHHHHHHHHhhcCCCC
Q psy146 9 KLKTLGYASPES----------FNPIREKEFRNMVVWLEDQKIRIYKIEDRAELRKLESP---HWMNSFHQYCTDVGLPI 75 (253)
Q Consensus 9 kL~aL~Y~~~~~----------~n~~d~~efr~lI~WLEdqkIR~y~iedR~~Lr~i~s~---~W~~~~~kYl~dl~cP~ 75 (253)
-|+||+|..+.- -.+..+ +|.++|+||-.+-=-+|++|++ .|..... ++-=.+.-+|-+|+||.
T Consensus 11 slk~l~~qg~~~k~~~lsral~ag~~sp-df~~~i~wl~~Elr~L~k~eE~--V~q~~~~~~~eF~~elS~lL~El~CPy 87 (465)
T KOG3973|consen 11 SLKALSFQGHCQKQENLSRALMAGGISP-DFANQIIWLCAELRELYKIEEY--VRQPNDHNLLEFLYELSTLLLELECPY 87 (465)
T ss_pred HHHHhccCCcccchhhHHHHHHcCCCCh-hHHHHHHHHHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHHHHHcCCch
Confidence 478999976521 123344 8999999999998889999987 4443212 24444557899999998
Q ss_pred CCCCChHHHH-HHHHHHH--HHHHHhhchHHhhhhhHHhhhhcCCCCCCccCCCCCCCCCCCChHHHHHHHHHHHHhCCC
Q psy146 76 TLLSTPLEQI-EWLLGHA--SRLEYADNVDQYKSQTAEFVSSNQSSAPKVVSTNPLDNLNFDSPEFKKGVNSLAEKLKIR 152 (253)
Q Consensus 76 ~~~~~~~~~l-dWLl~~A--V~leY~D~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~ld~~s~~f~~gv~~La~~L~I~ 152 (253)
..-. .-.+- -++...| ..++|.|.-=+ -+..-+++..+.++... . . -+-++-.-|..+|..||.+
T Consensus 88 ~eLt-~Gdi~~Rf~s~~a~~lLlsyL~SEl~---tarmi~~~~p~~p~~~~--e---k---~d~ev~q~i~~~~~~L~~~ 155 (465)
T KOG3973|consen 88 EELT-CGDIRTRFQSSSAKKLLLSYLDSELK---TARMITRQRPESPEIVS--E---K---RDLEVTQLIDSALRTLNFP 155 (465)
T ss_pred Hhhc-cccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCCCCCcccc--c---c---CCchHHHHHHHHHHHcCCC
Confidence 5422 10010 1122222 33456543211 11222222111111110 0 1 1234556688899999999
Q ss_pred CCCChhHHHHHHHHHHHHhcChhhhc
Q psy146 153 PHPNHLTTLEACCKLISARLNEDALA 178 (253)
Q Consensus 153 ~hpD~lv~L~A~~~~i~~~l~~~a~~ 178 (253)
.-|--.-+.+-. --|..|| ..+|+
T Consensus 156 k~p~Nin~~~lf-e~i~~kl-~~ai~ 179 (465)
T KOG3973|consen 156 KQPGNINEWKLF-ETIRQKL-DGAIK 179 (465)
T ss_pred CCCCCchHHHHH-HHHHHHH-HhHHh
Confidence 887543222222 2344443 34554
No 5
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=80.78 E-value=8.5 Score=32.65 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=50.3
Q ss_pred HHHhhhCC-CCC---CCCCCCCHHHHHHHHHHHhhchhccCCccchhhhcCCCCccHHHHHHHHHhhcCCCC-CCCC---
Q psy146 8 RKLKTLGY-ASP---ESFNPIREKEFRNMVVWLEDQKIRIYKIEDRAELRKLESPHWMNSFHQYCTDVGLPI-TLLS--- 79 (253)
Q Consensus 8 rkL~aL~Y-~~~---~~~n~~d~~efr~lI~WLEdqkIR~y~iedR~~Lr~i~s~~W~~~~~kYl~dl~cP~-~~~~--- 79 (253)
.-|..-|| +.+ ..+.----++|.+++.||-.+-.-.|+. ...+++.+-..++.||||+ ....
T Consensus 47 ~fL~~~~~~~~~is~k~l~~Pt~kdf~~I~~fL~~~idp~~~~----------~~k~eeev~~~lK~L~YP~~~isKS~L 116 (157)
T PF03801_consen 47 EFLSEHGFESHPISPKTLKSPTQKDFVEIFNFLFRQIDPNFKF----------GKKFEEEVPFLLKALGYPFATISKSSL 116 (157)
T ss_dssp HHHHHTT--SS---TTTTSS--HHHHHHHHHHHHHTTSTT-------------SSTHHHHHHHHHHHTT-SS----HHHH
T ss_pred HHHHHcCCCCccccccccCCCCHHHHHHHHHHHHHHhCCCCCc----------CcCHHHHHHHHHHHhCCCccccCHHHc
Confidence 35667788 432 2222234579999999998884445555 2478999999999999999 5421
Q ss_pred ----------ChHHHHHHHHHHHHHHHHh
Q psy146 80 ----------TPLEQIEWLLGHASRLEYA 98 (253)
Q Consensus 80 ----------~~~~~ldWLl~~AV~leY~ 98 (253)
.-..+|.||..++.-.+=.
T Consensus 117 ~a~gs~hsWP~lL~~L~WLv~l~~~~~~~ 145 (157)
T PF03801_consen 117 QAPGSPHSWPHLLGALHWLVELIKYEEEL 145 (157)
T ss_dssp HSTTSTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 1567899999887654433
No 6
>PF15433 MRP-S31: Mitochondrial 28S ribosomal protein S31
Probab=69.51 E-value=8.7 Score=36.22 Aligned_cols=63 Identities=14% Similarity=0.383 Sum_probs=50.5
Q ss_pred HHHHHhhhCCCCCCCCCCCCHHHHHHHHHHHhhchhccCCccchhhhcCCCCccHHHH--HHHHHhhcCCCCC
Q psy146 6 IIRKLKTLGYASPESFNPIREKEFRNMVVWLEDQKIRIYKIEDRAELRKLESPHWMNS--FHQYCTDVGLPIT 76 (253)
Q Consensus 6 ~~rkL~aL~Y~~~~~~n~~d~~efr~lI~WLEdqkIR~y~iedR~~Lr~i~s~~W~~~--~~kYl~dl~cP~~ 76 (253)
+.+-|+++...-|. ..|-.+|.|-++-|+=.|||+.-.++.+-....|.+| +++||.+. ||=.
T Consensus 188 ~~~el~~~~~~~p~-------N~feemi~WT~eGK~W~fPI~NE~g~~ee~~v~F~eHiFLe~hLe~~-~Pk~ 252 (298)
T PF15433_consen 188 FAKELSLINNQPPR-------NGFEEMIQWTKEGKLWEFPIDNEQGMDEEANVPFHEHIFLEKHLEDF-CPKQ 252 (298)
T ss_pred HHHHHHHHhccCCc-------cHHHHHHHHHhcCceeeccCCccccccccccCchhHHhhHHHHhhcc-CCcc
Confidence 46677777765442 2899999999999999999998888887655678886 46999999 8853
No 7
>PF15142 INCA1: INCA1
Probab=48.99 E-value=13 Score=31.87 Aligned_cols=19 Identities=42% Similarity=0.371 Sum_probs=16.3
Q ss_pred HhhhhhHHHHHHHHHHHHH
Q psy146 216 LYIHDLRDLQTKINEAIVA 234 (253)
Q Consensus 216 L~I~~LR~LQt~INe~IVa 234 (253)
-|++|||..|.-|||.=-|
T Consensus 106 yHLEDLRRRQriInElKkA 124 (178)
T PF15142_consen 106 YHLEDLRRRQRIINELKKA 124 (178)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4999999999999997543
No 8
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=46.72 E-value=43 Score=28.31 Aligned_cols=66 Identities=21% Similarity=0.352 Sum_probs=47.2
Q ss_pred chHHHH-H---hhhCCCCCCCCCCCCHHHHHHHHHHHhhchhccCCccchhhhc-CCCCccHHHHHHHHHhhc
Q psy146 4 SNIIRK-L---KTLGYASPESFNPIREKEFRNMVVWLEDQKIRIYKIEDRAELR-KLESPHWMNSFHQYCTDV 71 (253)
Q Consensus 4 ~m~~rk-L---~aL~Y~~~~~~n~~d~~efr~lI~WLEdqkIR~y~iedR~~Lr-~i~s~~W~~~~~kYl~dl 71 (253)
||+.|- | .+-+||-|- .|+..- -|+.++.|.|..+=....-++--.+| ..+++.|...|.+|=+++
T Consensus 24 SiLikN~l~d~~~~n~p~p~-pnVrSs-vl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqem 94 (158)
T COG5201 24 SILIKNMLCDSTACNYPIPA-PNVRSS-VLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEM 94 (158)
T ss_pred HHHHHHHhccccccCCCCcc-cchhHH-HHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHH
Confidence 455554 3 477898752 455544 79999999999988887777666788 555566999999884443
No 9
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=38.41 E-value=73 Score=27.05 Aligned_cols=72 Identities=25% Similarity=0.456 Sum_probs=51.6
Q ss_pred chHHHHHhhhCCCCCCCCCCCCHHHHHHHHHHHh----------------hchhccCCccchhhhcCCCCccHHHHHHHH
Q psy146 4 SNIIRKLKTLGYASPESFNPIREKEFRNMVVWLE----------------DQKIRIYKIEDRAELRKLESPHWMNSFHQY 67 (253)
Q Consensus 4 ~m~~rkL~aL~Y~~~~~~n~~d~~efr~lI~WLE----------------dqkIR~y~iedR~~Lr~i~s~~W~~~~~kY 67 (253)
.-+.++|.+.||. +.+...-..||+ .+-+|.|..+++..| +.=--.|..|
T Consensus 24 ~~L~~~L~~aGF~---------~~eI~~Al~WL~~L~~~~~~~~~~~~~~~~s~Riyt~~E~~~L-----~~e~rgfL~f 89 (155)
T PF04361_consen 24 DDLTRELSAAGFE---------DEEINKALDWLEGLAELQEEEPPAQFASPRSMRIYTPEEQEKL-----DTECRGFLLF 89 (155)
T ss_pred HHHHHHHHHcCCC---------HHHHHHHHHHHHHHHhccccccccccCCCCceEecCHHHHHHC-----CHHHHHHHHH
Confidence 3468899999994 568899999999 345899999998888 3334578899
Q ss_pred HhhcCCCCCCCCChHHHHHHHHHHHHHH
Q psy146 68 CTDVGLPITLLSTPLEQIEWLLGHASRL 95 (253)
Q Consensus 68 l~dl~cP~~~~~~~~~~ldWLl~~AV~l 95 (253)
|...|.=- .. +.++++-.|+.+
T Consensus 90 Leq~gvL~-~~-----~RE~VIdr~mal 111 (155)
T PF04361_consen 90 LEQAGVLD-PE-----QREMVIDRAMAL 111 (155)
T ss_pred HHHcCCCC-HH-----HHHHHHHHHHhC
Confidence 99988742 22 234555555555
No 10
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=33.38 E-value=26 Score=25.64 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=22.4
Q ss_pred CccchHHHHHhhhCCCCCCCCCCCCHHHHHHHHHHHhhchh
Q psy146 1 MSHSNIIRKLKTLGYASPESFNPIREKEFRNMVVWLEDQKI 41 (253)
Q Consensus 1 ~~~~m~~rkL~aL~Y~~~~~~n~~d~~efr~lI~WLEdqkI 41 (253)
.|.||++|+|+ +||..+ ..+|-=||+.-|
T Consensus 20 ~S~S~lQR~~~-IGynrA-----------ariid~lE~~Gi 48 (63)
T smart00843 20 ASTSLLQRRLR-IGYNRA-----------ARLIDQLEEEGI 48 (63)
T ss_pred CChHHHHHHHh-cchhHH-----------HHHHHHHHHCcC
Confidence 38899999997 688764 567777887765
No 11
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.57 E-value=34 Score=31.82 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=20.2
Q ss_pred hhhCCCCC---CCCCCCCHHHHHHHHHHH
Q psy146 11 KTLGYASP---ESFNPIREKEFRNMVVWL 36 (253)
Q Consensus 11 ~aL~Y~~~---~~~n~~d~~efr~lI~WL 36 (253)
++||||++ ++|.--+-.-..++..||
T Consensus 1 R~LGypr~iSmenFrtPNF~LVAeiL~WL 29 (267)
T PF10234_consen 1 RALGYPRLISMENFRTPNFELVAEILRWL 29 (267)
T ss_pred CCCCCCCCCcHHHcCCCChHHHHHHHHHH
Confidence 58999996 456666777778888998
No 12
>COG3747 Phage terminase, small subunit [DNA replication, recombination, and repair]
Probab=28.47 E-value=50 Score=28.35 Aligned_cols=32 Identities=31% Similarity=0.610 Sum_probs=23.8
Q ss_pred HhhhCCCCCCCCCCCCHHHHHHHHHHHhhchh
Q psy146 10 LKTLGYASPESFNPIREKEFRNMVVWLEDQKI 41 (253)
Q Consensus 10 L~aL~Y~~~~~~n~~d~~efr~lI~WLEdqkI 41 (253)
.-.+.|.-|+.++-.=.++||.++-.||+++.
T Consensus 33 ~~r~~pkaPdwLd~~A~~~Wrrvvp~L~e~~l 64 (160)
T COG3747 33 FGRLAPKAPDWLDPTAKKEWRRVVPFLEELKL 64 (160)
T ss_pred ccccCCCCccccCHHHHHHHHHHHHHHHHhcc
Confidence 33566666777777777889999999998763
No 13
>PF09762 KOG2701: Coiled-coil domain-containing protein (DUF2037); InterPro: IPR019159 This entry represents a family of coiled-coil-containing proteins conserved from plants to vertebrates. It includes Drosophila fidipidine, whose function is unknown.
Probab=27.86 E-value=1e+02 Score=27.00 Aligned_cols=88 Identities=11% Similarity=0.161 Sum_probs=52.6
Q ss_pred HHHHHhhhCCCCCCCCCCCCHHHHHHHHHHHhhchhccCCccchhhhc----CCCCc-cHHHHHHHHHhhcCCCCCCCCC
Q psy146 6 IIRKLKTLGYASPESFNPIREKEFRNMVVWLEDQKIRIYKIEDRAELR----KLESP-HWMNSFHQYCTDVGLPITLLST 80 (253)
Q Consensus 6 ~~rkL~aL~Y~~~~~~n~~d~~efr~lI~WLEdqkIR~y~iedR~~Lr----~i~s~-~W~~~~~kYl~dl~cP~~~~~~ 80 (253)
.--.|-+-||+.+---.+++-.-+--=|.|.=..- . +..+. +-|= ++... .=.+.+.+=|.+++||.....+
T Consensus 5 I~~~L~~aGY~RaRv~~Ls~fDkivGGi~W~i~~~-~-~~v~~-dllf~E~~~i~~Ki~~~ekIv~~L~~m~CP~~l~ph 81 (182)
T PF09762_consen 5 ILDLLSAAGYHRARVKSLSPFDKIVGGITWCITRC-N-VDVDV-DLLFQENSTIGQKIALCEKIVEALPKMKCPHRLEPH 81 (182)
T ss_pred HHHHHHHcCccHHHhcCCChHHHHHhHHHHHHHhc-C-CCCCc-cchhcccccHHHHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 34467888999875555666555666667775443 2 11110 1010 11111 1356677889999999987541
Q ss_pred ---------hHHHHHHHHHHHHHHH
Q psy146 81 ---------PLEQIEWLLGHASRLE 96 (253)
Q Consensus 81 ---------~~~~ldWLl~~AV~le 96 (253)
-.-+++||+-.++.-.
T Consensus 82 Qi~glDf~~i~PVvqWLvkr~~e~r 106 (182)
T PF09762_consen 82 QIQGLDFIHIFPVVQWLVKRVLETR 106 (182)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3458999999987544
No 14
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=27.03 E-value=53 Score=22.89 Aligned_cols=16 Identities=19% Similarity=0.490 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHhhch
Q psy146 25 REKEFRNMVVWLEDQK 40 (253)
Q Consensus 25 d~~efr~lI~WLEdqk 40 (253)
.++|.+.||.||+.+|
T Consensus 76 s~~e~~~l~ayl~slk 91 (91)
T PF00034_consen 76 SDEEIADLAAYLRSLK 91 (91)
T ss_dssp SHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhC
Confidence 4569999999999876
No 15
>PRK03430 hypothetical protein; Validated
Probab=26.54 E-value=2.1e+02 Score=24.61 Aligned_cols=66 Identities=21% Similarity=0.379 Sum_probs=47.9
Q ss_pred hHHHHHhhhCCCCCCCCCCCCHHHHHHHHHHHhhc------------------hhccCCccchhhhcCCCCccHHHHHHH
Q psy146 5 NIIRKLKTLGYASPESFNPIREKEFRNMVVWLEDQ------------------KIRIYKIEDRAELRKLESPHWMNSFHQ 66 (253)
Q Consensus 5 m~~rkL~aL~Y~~~~~~n~~d~~efr~lI~WLEdq------------------kIR~y~iedR~~Lr~i~s~~W~~~~~k 66 (253)
-+.++|.+-||+ +++..+-..|||.- -+|.|..++...| +.=--.|.-
T Consensus 25 ~L~~~L~~aGF~---------~~eI~~AL~WLe~L~~~~~~~~~~~~~~~~~~s~RIYt~~E~~~L-----~~e~rGFL~ 90 (157)
T PRK03430 25 KLEDDLTDAGFH---------REDIYNALLWLEKLADLQEGLAEPMQLASDPLSMRIYTPEECERL-----DASCRGFLL 90 (157)
T ss_pred HHHHHHHHcCCC---------HHHHHHHHHHHHHHHHhcccccccccccCCCcceeeeCHHHHHhC-----CHHHHHHHH
Confidence 367899999984 45889999999864 3888888887777 334568999
Q ss_pred HHhhcCCCCCCCCChHHHHH
Q psy146 67 YCTDVGLPITLLSTPLEQIE 86 (253)
Q Consensus 67 Yl~dl~cP~~~~~~~~~~ld 86 (253)
||...|.=- ... |.-++|
T Consensus 91 fLEq~gvL~-~~~-RE~VId 108 (157)
T PRK03430 91 FLEQIQVLN-LET-REMVID 108 (157)
T ss_pred HHHHcCCCC-HHH-HHHHHH
Confidence 999998742 333 554444
No 16
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=26.04 E-value=2.6e+02 Score=27.04 Aligned_cols=86 Identities=19% Similarity=0.366 Sum_probs=58.0
Q ss_pred chHHHHHhhhCCCC------------CCCCC-----CC-CHHHHHHHHHHHhhchhccCC-ccchhhhcCCCCcc-HHHH
Q psy146 4 SNIIRKLKTLGYAS------------PESFN-----PI-REKEFRNMVVWLEDQKIRIYK-IEDRAELRKLESPH-WMNS 63 (253)
Q Consensus 4 ~m~~rkL~aL~Y~~------------~~~~n-----~~-d~~efr~lI~WLEdqkIR~y~-iedR~~Lr~i~s~~-W~~~ 63 (253)
-.+=-||+.|+|.. ..+|- .+ ---.|..|..||=-+-.+.|. +.+ -+.++ =...
T Consensus 2 e~l~dKLklL~Ye~~f~~~~~~kpl~r~yFa~~~~Np~eQF~~F~~L~~WL~~~~g~~f~~p~e------~DDPn~~~~~ 75 (359)
T PF10498_consen 2 EDLLDKLKLLNYEKDFCKKRKMKPLSRHYFAVPSTNPGEQFYYFTSLCAWLISKAGRKFEQPQE------YDDPNATISN 75 (359)
T ss_pred hhHHHHHHhhhhHHHHhhhcCCCCCCHHHhcCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCcc------cCCHHHHHHH
Confidence 34556888888864 12233 21 123577899999886665555 222 23343 6677
Q ss_pred HHHHHhhcCCCCCCCCC---------hHHHHHHHHHHHHHH
Q psy146 64 FHQYCTDVGLPITLLST---------PLEQIEWLLGHASRL 95 (253)
Q Consensus 64 ~~kYl~dl~cP~~~~~~---------~~~~ldWLl~~AV~l 95 (253)
+...|+.+|.|++...+ .-.+||-|...|+..
T Consensus 76 Il~~lr~~g~~~df~p~kLk~G~Ge~vc~VLd~Lad~AL~~ 116 (359)
T PF10498_consen 76 ILDELRKLGVPVDFPPSKLKQGSGEHVCYVLDQLADEALKR 116 (359)
T ss_pred HHHHHHccCCCCCCChHHhhCCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999987432 678999999999985
No 17
>KOG3711|consensus
Probab=24.48 E-value=56 Score=33.39 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=24.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhhcCC
Q psy146 213 LNLLYIHDLRDLQTKINEAIVAVQTVTANP 242 (253)
Q Consensus 213 LRLL~I~~LR~LQt~INe~IVaVQ~lTAdP 242 (253)
.|+=--+++|.||+.|||+||.=-.|-|+|
T Consensus 164 T~a~~~~~M~~Led~~~e~vV~~NklAa~P 193 (719)
T KOG3711|consen 164 TNAKSDSHMRMLEDCVQETIVEHNKLAANP 193 (719)
T ss_pred eccCChHHHHHHHHHHHHHHHhhccccCCc
Confidence 344456789999999999999977787887
No 18
>PHA03252 DNA packaging tegument protein UL25; Provisional
Probab=22.27 E-value=43 Score=34.49 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=35.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCcccc
Q psy146 209 AAKILNLLYIHDLRDLQTKINEAIVAVQTVTANPKTDT 246 (253)
Q Consensus 209 aa~iLRLL~I~~LR~LQt~INe~IVaVQ~lTAdPkTD~ 246 (253)
..|.+++.+++++|--|+=+.++|.++|..|.+|-+|-
T Consensus 188 ~rr~~~~~n~~~~s~S~~lm~~vv~aL~s~t~y~~~D~ 225 (589)
T PHA03252 188 WRRVYKLTQVDSLSISQELLMGVVNALEQVTVYPTYDC 225 (589)
T ss_pred hhcceecccccccchHHHHHHHHHHHHHHhccccchhc
Confidence 67888999999999999999999999999999999986
No 19
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=21.03 E-value=1e+02 Score=23.84 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=34.1
Q ss_pred chHHHHHhhhCCCC-CCCCCCCCHHHHHHHHHHHhhchhccCCc
Q psy146 4 SNIIRKLKTLGYAS-PESFNPIREKEFRNMVVWLEDQKIRIYKI 46 (253)
Q Consensus 4 ~m~~rkL~aL~Y~~-~~~~n~~d~~efr~lI~WLEdqkIR~y~i 46 (253)
.-|+..|...+-++ |.++++=+..+.+.++.++-..-+|||+.
T Consensus 43 ~~fk~~l~~~sv~rpp~~~~iFs~~~~~~i~~y~~~t~frHykL 86 (101)
T PF14769_consen 43 KYFKELLLRHSVQRPPFSIGIFSVDQVKAIIDYFHNTYFRHYKL 86 (101)
T ss_pred HHHHHHHHHhccCCCCcccCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45677776666555 45678889999999999999999999974
No 20
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.34 E-value=88 Score=30.17 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=43.6
Q ss_pred hCCCCCCCCCCCCHHHHHHHHHHHhhc--hhccCCccchhhhcCCC-CccHHHHHHHHHhhcCCCCCC
Q psy146 13 LGYASPESFNPIREKEFRNMVVWLEDQ--KIRIYKIEDRAELRKLE-SPHWMNSFHQYCTDVGLPITL 77 (253)
Q Consensus 13 L~Y~~~~~~n~~d~~efr~lI~WLEdq--kIR~y~iedR~~Lr~i~-s~~W~~~~~kYl~dl~cP~~~ 77 (253)
++|+--.++| +++++++.|+.|+.+- +|++.+-+.=+...... +++--..|.++|++.|.++..
T Consensus 281 ieyvLI~GvN-Ds~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtv 347 (368)
T PRK14456 281 LVYMLLEGIN-DSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLLDAGLQVTV 347 (368)
T ss_pred EEEEEEcCCC-CCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEe
Confidence 4455555677 5667999999999885 66666655433222222 244778899999999998765
No 21
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.08 E-value=1.9e+02 Score=18.39 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=16.5
Q ss_pred HHHHHHHhhcCCCCCCCC-ChHHHH
Q psy146 62 NSFHQYCTDVGLPITLLS-TPLEQI 85 (253)
Q Consensus 62 ~~~~kYl~dl~cP~~~~~-~~~~~l 85 (253)
+.+.+||.+.|+|+.... +|.+.|
T Consensus 7 ~~L~~wL~~~gi~~~~~~~~rd~Ll 31 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSAKTRDELL 31 (38)
T ss_pred HHHHHHHHHcCCCCCCCCCCHHHHH
Confidence 467889999999986543 355533
Done!