Query psy146
Match_columns 253
No_of_seqs 94 out of 96
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 15:50:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2igp_A Retinoblastoma-associat 88.7 2.2 7.6E-05 33.6 8.4 77 8-93 25-117 (120)
2 2w6a_A ARF GTPase-activating p 71.2 3.6 0.00012 28.9 3.2 43 189-231 2-53 (63)
3 2ve7_A Kinetochore protein HEC 65.2 12 0.00042 33.7 6.5 77 8-93 23-115 (315)
4 1zva_A E2 glycoprotein; membra 49.8 16 0.00056 26.7 3.6 32 204-236 46-77 (77)
5 2blf_B SORB, sulfite\:cytochro 26.4 39 0.0013 23.8 2.5 35 56-91 46-80 (81)
6 2es9_A Putative cytoplasmic pr 25.3 37 0.0013 26.1 2.2 18 60-77 37-54 (115)
7 2sqc_A Squalene-hopene cyclase 23.2 82 0.0028 30.7 4.8 73 9-93 271-345 (631)
8 4aj5_1 SKA3, spindle and kinet 20.1 1.2E+02 0.004 23.3 4.1 27 207-234 38-64 (101)
9 2dkl_A Trinucleotide repeat co 18.6 86 0.003 22.9 3.0 35 58-92 17-60 (85)
10 2iaz_A Hypothetical protein SP 18.1 55 0.0019 24.4 1.9 29 217-245 82-110 (113)
No 1
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=88.71 E-value=2.2 Score=33.59 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=55.8
Q ss_pred HHHhhhCCCCC---CCCCCCCHHHHHHHHHHHhhchhccCCccchhhhcCCCCccHHHHHHHHHhhcCCCCCCCC-----
Q psy146 8 RKLKTLGYASP---ESFNPIREKEFRNMVVWLEDQKIRIYKIEDRAELRKLESPHWMNSFHQYCTDVGLPITLLS----- 79 (253)
Q Consensus 8 rkL~aL~Y~~~---~~~n~~d~~efr~lI~WLEdqkIR~y~iedR~~Lr~i~s~~W~~~~~kYl~dl~cP~~~~~----- 79 (253)
.-|..-||+.+ ..+.--.-++|.+++.||=.+--..|+.. ...+++.+-..+++|+||+....
T Consensus 25 ~fL~~~~~~~~is~k~L~~Pt~kdF~~if~fL~~~idp~~~~~---------~~~~eeev~~~lK~L~YP~~isKS~L~a 95 (120)
T 2igp_A 25 EFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELP---------DTKFEEEVPRIFKDLGYPFALSKSSMYT 95 (120)
T ss_dssp HHHHHTTCSSCCCTTTTSSCCHHHHHHHHHHHHTTTCTTCCCC---------CTTHHHHHHHHHHHTTCCSCCCHHHHHT
T ss_pred HHHHHcCCCCCCCccccCCCCHHHHHHHHHHHHHhcCCCCccC---------CCChHHHHHHHHHHcCCCceeCHHHhcC
Confidence 45777888752 23444467899999999987655555442 46799999999999999997521
Q ss_pred ---C-----hHHHHHHHHHHHH
Q psy146 80 ---T-----PLEQIEWLLGHAS 93 (253)
Q Consensus 80 ---~-----~~~~ldWLl~~AV 93 (253)
. --.+|.||.-++.
T Consensus 96 ~g~pHsWp~~L~~L~WLvel~~ 117 (120)
T 2igp_A 96 VGAPHTWPHIVAALVWLIDCIK 117 (120)
T ss_dssp TTSTTTHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHH
Confidence 0 5678999987763
No 2
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=71.24 E-value=3.6 Score=28.95 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=31.0
Q ss_pred CCCcccCCCC----CCCCchhHHHHHHHHHHHhhh-----hhHHHHHHHHHH
Q psy146 189 PFPFLEIDNG----FTLPDPVLNKAAKILNLLYIH-----DLRDLQTKINEA 231 (253)
Q Consensus 189 ~~~l~~~~lG----f~~~D~~l~~aa~iLRLL~I~-----~LR~LQt~INe~ 231 (253)
|+++++.|+- ++++.+-...-|||=.|+.++ +||-+|.+|+.+
T Consensus 2 ~~dlsDgpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~L 53 (63)
T 2w6a_A 2 PLGSSDGAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKL 53 (63)
T ss_dssp CCC--CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence 4555565555 256777666779999999874 799999999875
No 3
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=65.24 E-value=12 Score=33.73 Aligned_cols=77 Identities=19% Similarity=0.351 Sum_probs=55.5
Q ss_pred HHHhhhCCCCCCC---CCCCCHHHHHHHHHHHhhchhccCCccchhhhcCCCCccHHHHHHHHHhhcCCCCCCCC-----
Q psy146 8 RKLKTLGYASPES---FNPIREKEFRNMVVWLEDQKIRIYKIEDRAELRKLESPHWMNSFHQYCTDVGLPITLLS----- 79 (253)
Q Consensus 8 rkL~aL~Y~~~~~---~n~~d~~efr~lI~WLEdqkIR~y~iedR~~Lr~i~s~~W~~~~~kYl~dl~cP~~~~~----- 79 (253)
.-|..-||+.+-+ +---.-++|..++-||=.+.-..|+. +...+.+.+-..++.||||+....
T Consensus 23 ~fL~~~~~~~~is~k~L~~Pt~KdF~~if~fL~~~idp~~~~---------~~~k~eeev~~~lK~L~YP~~isKS~L~a 93 (315)
T 2ve7_A 23 EFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYEL---------PDTKFEEEVPRIFKDLGYPFALSKSSMYT 93 (315)
T ss_dssp HHHHHTTCSSCCCTGGGSSCCHHHHHHHHHHHHTTTSTTCCC---------CSSCHHHHHHHHHHHTTCSSCCCHHHHHT
T ss_pred HHHHhcCCCCCCCcccCCCCCHHHHHHHHHHHHHhcCCCCcc---------CCCChHHHHHHHHHHcCCCceeCHHHhcC
Confidence 4577888875321 22225679999999998765555554 346799999999999999997521
Q ss_pred ---C-----hHHHHHHHHHHHH
Q psy146 80 ---T-----PLEQIEWLLGHAS 93 (253)
Q Consensus 80 ---~-----~~~~ldWLl~~AV 93 (253)
+ --.+|.||.-.+.
T Consensus 94 ~g~pHsWp~~Lg~L~WLvel~~ 115 (315)
T 2ve7_A 94 VGAPHTWPHIVAALVWLIDCIK 115 (315)
T ss_dssp TTSTTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHH
Confidence 1 5678999998763
No 4
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=49.76 E-value=16 Score=26.65 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy146 204 PVLNKAAKILNLLYIHDLRDLQTKINEAIVAVQ 236 (253)
Q Consensus 204 ~~l~~aa~iLRLL~I~~LR~LQt~INe~IVaVQ 236 (253)
.+|+..+.- |+.-++..|+|=..|||+....|
T Consensus 46 aaLnafv~~-~~~ev~~~r~lA~~iNEcV~~~~ 77 (77)
T 1zva_A 46 SGINASVVN-IQKEIDRLNEVAKNLNESLIDLQ 77 (77)
T ss_dssp TTHHHHHHH-HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccC
Confidence 566666555 99999999999999999987655
No 5
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=26.38 E-value=39 Score=23.81 Aligned_cols=35 Identities=9% Similarity=0.160 Sum_probs=27.0
Q ss_pred CCccHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHH
Q psy146 56 ESPHWMNSFHQYCTDVGLPITLLSTPLEQIEWLLGH 91 (253)
Q Consensus 56 ~s~~W~~~~~kYl~dl~cP~~~~~~~~~~ldWLl~~ 91 (253)
+...|...+.+-....|++++..+ +..+++||..+
T Consensus 46 ~~~~W~~~v~~M~~~~g~~ls~~e-~~~I~~YL~~~ 80 (81)
T 2blf_B 46 GQAFWDAEVQKMIKVYHAPVDEAD-AKAIADYLAKT 80 (81)
T ss_dssp CHHHHHHHHHHHHHTSCCCCCHHH-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHh
Confidence 335699988888777888886655 88899998653
No 6
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=25.27 E-value=37 Score=26.06 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhcCCCCCC
Q psy146 60 WMNSFHQYCTDVGLPITL 77 (253)
Q Consensus 60 W~~~~~kYl~dl~cP~~~ 77 (253)
=.+.+.|||++||.|.+.
T Consensus 37 TAKGifKyL~elGvPas~ 54 (115)
T 2es9_A 37 TAKGILKYLHDLGVPVSP 54 (115)
T ss_dssp HHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHcCCCCCH
Confidence 567889999999999854
No 7
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=23.20 E-value=82 Score=30.68 Aligned_cols=73 Identities=22% Similarity=0.222 Sum_probs=47.3
Q ss_pred HHhhhCCCCCCCCCCCCHHHHHHHHHHHhhchhccCCccc-hhhhcCCCCccHHHHHH-HHHhhcCCCCCCCCChHHHHH
Q psy146 9 KLKTLGYASPESFNPIREKEFRNMVVWLEDQKIRIYKIED-RAELRKLESPHWMNSFH-QYCTDVGLPITLLSTPLEQIE 86 (253)
Q Consensus 9 kL~aL~Y~~~~~~n~~d~~efr~lI~WLEdqkIR~y~ied-R~~Lr~i~s~~W~~~~~-kYl~dl~cP~~~~~~~~~~ld 86 (253)
-|.++||+ +++ .|+.-+..++|--... +| --.+....|+.|..+|. .+|...|.|..... ...+++
T Consensus 271 ~l~~~g~~-------~~~-~~~~~~~~~~~~~~~~---~dGg~~~~~~~s~vwdta~~l~AL~~~G~~~~~~~-~~ka~~ 338 (631)
T 2sqc_A 271 ALKILDMT-------QHP-AFIKGWEGLELYGVEL---DYGGWMFQASISPVWDTGLAVLALRAAGLPADHDR-LVKAGE 338 (631)
T ss_dssp HHHHTTCT-------TSH-HHHHHHHGGGGGEEEC---TTSCEEECSSCCHHHHHHHHHHHHHHTTCCTTCHH-HHHHHH
T ss_pred HHHHcCCC-------CCH-HHHHHHHHHHhceEEc---CCCceeeCCCCChHHHHHHHHHHHHHcCCCCCCHH-HHHHHH
Confidence 35677886 233 7888887776653331 22 11234445667998886 89999999864433 677899
Q ss_pred HHHHHHH
Q psy146 87 WLLGHAS 93 (253)
Q Consensus 87 WLl~~AV 93 (253)
||...-+
T Consensus 339 ~L~~~q~ 345 (631)
T 2sqc_A 339 WLLDRQI 345 (631)
T ss_dssp HHHHTCC
T ss_pred HHHHhcC
Confidence 9987533
No 8
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.14 E-value=1.2e+02 Score=23.26 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy146 207 NKAAKILNLLYIHDLRDLQTKINEAIVA 234 (253)
Q Consensus 207 ~~aa~iLRLL~I~~LR~LQt~INe~IVa 234 (253)
+.++|||+=|| ++.|.|...||..++.
T Consensus 38 ~~~~rilhdl~-seV~~LK~dv~~~L~k 64 (101)
T 4aj5_1 38 DYPMRILYDLH-SEVQTLKDDINILLDK 64 (101)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 68899999998 5789999999988764
No 9
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=18.59 E-value=86 Score=22.92 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=23.2
Q ss_pred ccHH-HHHHHHHhhcCCCCCC--------CCChHHHHHHHHHHH
Q psy146 58 PHWM-NSFHQYCTDVGLPITL--------LSTPLEQIEWLLGHA 92 (253)
Q Consensus 58 ~~W~-~~~~kYl~dl~cP~~~--------~~~~~~~ldWLl~~A 92 (253)
..|. +...+-|.++|+|-.. ..+.+.+++||+++.
T Consensus 17 ~~~~n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 17 EAWIMSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred ccccCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 4587 7777888899998632 012566777777653
No 10
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: a.281.1.2
Probab=18.12 E-value=55 Score=24.40 Aligned_cols=29 Identities=7% Similarity=0.255 Sum_probs=26.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhcCCccc
Q psy146 217 YIHDLRDLQTKINEAIVAVQTVTANPKTD 245 (253)
Q Consensus 217 ~I~~LR~LQt~INe~IVaVQ~lTAdPkTD 245 (253)
.|.++++-|..+|.+|-.|..+.++|-+|
T Consensus 82 ~v~~y~~Ae~~l~~ll~~I~~~I~~~i~e 110 (113)
T 2iaz_A 82 LLSEFFTKQQQLAIYLSDIEKIVFEPVSE 110 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998776
Done!