Query psy146
Match_columns 253
No_of_seqs 94 out of 96
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 15:50:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy146.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/146hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j5pa1 a.4.5.67 (A:1261-1329) 61.2 0.69 5E-05 31.7 -0.4 30 2-43 23-52 (69)
2 d2ve8a1 a.4.5.67 (A:745-811) D 60.4 0.84 6.1E-05 31.1 -0.0 31 1-43 19-49 (67)
3 d1c75a_ a.3.1.1 (A:) Cytochrom 31.2 12 0.00085 24.3 2.1 20 20-40 52-71 (71)
4 d2es9a1 a.247.1.1 (A:11-107) H 31.2 12 0.00088 26.2 2.2 18 60-77 27-44 (97)
5 d1jmxa1 a.3.1.7 (A:2-85) Quino 30.9 11 0.00082 25.9 2.0 33 58-91 34-66 (84)
6 d351ca_ a.3.1.1 (A:) Cytochrom 29.6 14 0.0011 24.0 2.4 23 16-40 60-82 (82)
7 d1pbya1 a.3.1.7 (A:1-85) Quino 27.0 16 0.0012 25.1 2.3 32 58-90 34-65 (85)
8 d2af8a_ a.28.1.1 (A:) Actinorh 25.0 18 0.0013 24.3 2.2 50 126-175 33-85 (86)
9 d1qsma_ d.108.1.1 (A:) Histone 23.6 19 0.0014 25.1 2.3 44 37-89 1-44 (150)
10 d1g9la_ a.144.1.1 (A:) poly(A) 23.2 35 0.0025 25.8 3.8 37 210-248 99-135 (144)
11 d1a56a_ a.3.1.1 (A:) Cytochrom 22.4 32 0.0023 22.2 3.1 24 16-40 58-81 (81)
12 d1j2oa2 g.39.1.3 (A:31-63) Rho 22.2 13 0.00098 21.2 0.8 10 244-253 6-15 (33)
No 1
>d2j5pa1 a.4.5.67 (A:1261-1329) DNA translocase FtsK {Escherichia coli [TaxId: 562]}
Probab=61.19 E-value=0.69 Score=31.72 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=24.6
Q ss_pred ccchHHHHHhhhCCCCCCCCCCCCHHHHHHHHHHHhhchhcc
Q psy146 2 SHSNIIRKLKTLGYASPESFNPIREKEFRNMVVWLEDQKIRI 43 (253)
Q Consensus 2 ~~~m~~rkL~aL~Y~~~~~~n~~d~~efr~lI~WLEdqkIR~ 43 (253)
|+||++|||+ +||.++ ..+|-+||+.-|=.
T Consensus 23 S~S~lQR~l~-IGYnRA-----------ariid~LE~~GiVs 52 (69)
T d2j5pa1 23 SISGVQRQFR-IGYNRA-----------ARIIEQMEAQGIVS 52 (69)
T ss_dssp EHHHHHHHHT-CCHHHH-----------HHHHHHHHHHTSBC
T ss_pred cHHHHHHHHh-ccchHH-----------HHHHHHHHHCCcCC
Confidence 7899999997 688653 68999999987743
No 2
>d2ve8a1 a.4.5.67 (A:745-811) DNA translocase FtsK {Pseudomonas aeruginosa [TaxId: 287]}
Probab=60.41 E-value=0.84 Score=31.07 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=24.9
Q ss_pred CccchHHHHHhhhCCCCCCCCCCCCHHHHHHHHHHHhhchhcc
Q psy146 1 MSHSNIIRKLKTLGYASPESFNPIREKEFRNMVVWLEDQKIRI 43 (253)
Q Consensus 1 ~~~~m~~rkL~aL~Y~~~~~~n~~d~~efr~lI~WLEdqkIR~ 43 (253)
.|+|+++|||+ +||..+ ..+|-+||+.-|=.
T Consensus 19 aS~S~lQR~l~-IGYnRA-----------ariid~LE~~GiVs 49 (67)
T d2ve8a1 19 ASISAVQRKLK-IGYNRA-----------ARMIEAMEMAGVVT 49 (67)
T ss_dssp CCHHHHHHHHT-CCHHHH-----------HHHHHHHHHTTSBC
T ss_pred ccHHHHHHHHh-cchHHH-----------HHHHHHHHHCcCCC
Confidence 48999999997 688653 68999999887644
No 3
>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Bacillus pasteurii [TaxId: 1474]}
Probab=31.25 E-value=12 Score=24.28 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.3
Q ss_pred CCCCCCHHHHHHHHHHHhhch
Q psy146 20 SFNPIREKEFRNMVVWLEDQK 40 (253)
Q Consensus 20 ~~n~~d~~efr~lI~WLEdqk 40 (253)
.|.++|+ |...++.||.+||
T Consensus 52 ~~~Ls~~-ei~~i~~Yl~~~K 71 (71)
T d1c75a_ 52 GGIAKGA-EAEAVAAWLAEKK 71 (71)
T ss_dssp SCSSCHH-HHHHHHHHHHTCC
T ss_pred CCCCCHH-HHHHHHHHHHHcC
Confidence 4778776 9999999999987
No 4
>d2es9a1 a.247.1.1 (A:11-107) Hypothetical protein YoaC {Salmonella typhimurium [TaxId: 90371]}
Probab=31.17 E-value=12 Score=26.21 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhcCCCCCC
Q psy146 60 WMNSFHQYCTDVGLPITL 77 (253)
Q Consensus 60 W~~~~~kYl~dl~cP~~~ 77 (253)
=.+.+.|||++||.|.+.
T Consensus 27 TAKGifKyLkelGVPas~ 44 (97)
T d2es9a1 27 TAKGILKYLHDLGVPVSP 44 (97)
T ss_dssp HHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHcCCCCCH
Confidence 457889999999999853
No 5
>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Probab=30.95 E-value=11 Score=25.86 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=27.2
Q ss_pred ccHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHH
Q psy146 58 PHWMNSFHQYCTDVGLPITLLSTPLEQIEWLLGH 91 (253)
Q Consensus 58 ~~W~~~~~kYl~dl~cP~~~~~~~~~~ldWLl~~ 91 (253)
..|...+.+=....|.|++... ...+++||..+
T Consensus 34 ~~W~~~V~~M~~~~Ga~l~~~e-~~~Iv~YLa~~ 66 (84)
T d1jmxa1 34 EGWLMSIARMQVMHGLQISDDD-RRTLVKYLADK 66 (84)
T ss_dssp HHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHH
Confidence 3599999998888899987666 88899998653
No 6
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=29.56 E-value=14 Score=24.03 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=18.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhch
Q psy146 16 ASPESFNPIREKEFRNMVVWLEDQK 40 (253)
Q Consensus 16 ~~~~~~n~~d~~efr~lI~WLEdqk 40 (253)
++| .|.++|+ |.+.|+.||..+|
T Consensus 60 ~MP-~~~lsd~-ei~~la~Yi~SlK 82 (82)
T d351ca_ 60 PMP-PNAVSDD-EAQTLAKWVLSQK 82 (82)
T ss_dssp CBC-CCSCCHH-HHHHHHHHHHTTC
T ss_pred ccc-ccCCCHH-HHHHHHHHHHhcC
Confidence 455 4788777 9999999998765
No 7
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=27.01 E-value=16 Score=25.08 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHhhcCCCCCCCCChHHHHHHHHH
Q psy146 58 PHWMNSFHQYCTDVGLPITLLSTPLEQIEWLLG 90 (253)
Q Consensus 58 ~~W~~~~~kYl~dl~cP~~~~~~~~~~ldWLl~ 90 (253)
..|...+.+=.+..|.|++-.+ +..+++||..
T Consensus 34 ~~W~~~V~~M~~~~Ga~l~~~e-~~~Iv~YLa~ 65 (85)
T d1pbya1 34 EGWDMTVTRMMRNHGVALEPEE-RAAIVRHLSD 65 (85)
T ss_dssp HHHHHHHHHHHHHSCCCCCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHH
Confidence 3588888888888888886655 8888888865
No 8
>d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]}
Probab=24.96 E-value=18 Score=24.26 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=39.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhCCCCCCC---hhHHHHHHHHHHHHhcChh
Q psy146 126 NPLDNLNFDSPEFKKGVNSLAEKLKIRPHPN---HLTTLEACCKLISARLNED 175 (253)
Q Consensus 126 ~~l~~ld~~s~~f~~gv~~La~~L~I~~hpD---~lv~L~A~~~~i~~~l~~~ 175 (253)
.+|..+.++|=...+-+..|-+.+|+..-++ ...++++.+.+|..+|.+.
T Consensus 33 ~~f~dlG~DSl~~~~l~~~l~~~~g~~l~~~~~~~~~Tv~~l~~~i~~~l~~~ 85 (86)
T d2af8a_ 33 LRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALAEA 85 (86)
T ss_dssp SSHHHHTCSSHHHHHHHHHHHHHHTCCCCCSTTTTCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHHHHHHHccCcCHHHHHcCCCHHHHHHHHHHHhhcc
Confidence 3677788999999999999999999886553 2346689999998888553
No 9
>d1qsma_ d.108.1.1 (A:) Histone acetyltransferase HPA2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.60 E-value=19 Score=25.09 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=28.6
Q ss_pred hhchhccCCccchhhhcCCCCccHHHHHHHHHhhcCCCCCCCCChHHHHHHHH
Q psy146 37 EDQKIRIYKIEDRAELRKLESPHWMNSFHQYCTDVGLPITLLSTPLEQIEWLL 89 (253)
Q Consensus 37 EdqkIR~y~iedR~~Lr~i~s~~W~~~~~kYl~dl~cP~~~~~~~~~~ldWLl 89 (253)
|+-.||..+.+|. ..|-..|..|..-.+.+...+. ..+...|+.
T Consensus 1 ~~i~IR~~~~~D~--------e~~~~L~~~y~~fy~~~~~~e~-~~~~~~~~~ 44 (150)
T d1qsma_ 1 DNITVRFVTENDK--------EGWQRLWKSYQDFYEVSFPDDL-DDFNFGRFL 44 (150)
T ss_dssp CCEEEEECCGGGH--------HHHHHHHHHHHHHTTCCCCHHH-HHHHHHHHH
T ss_pred CCeEEEECCHHHH--------HHHHHHHHHHHHHhcccCchHH-HHHHHHHHh
Confidence 4567888888876 3588888888887777654322 344455543
No 10
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.18 E-value=35 Score=25.80 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=29.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhhcCCcccccc
Q psy146 210 AKILNLLYIHDLRDLQTKINEAIVAVQTVTANPKTDTKL 248 (253)
Q Consensus 210 a~iLRLL~I~~LR~LQt~INe~IVaVQ~lTAdPkTD~kL 248 (253)
.-+|.||.-.++ |..+|+|++...|+.-+....+.+.
T Consensus 99 ~ell~lL~~~~~--L~~kV~EA~~vL~~~~~~~~~~~~~ 135 (144)
T d1g9la_ 99 SELLHMLESPES--LRSKVDEAVAVLQAHQAKEAAQKAV 135 (144)
T ss_dssp HHHHHHHHCTTH--HHHHHHHHHHHHHTTSSSTTCCCCC
T ss_pred HHHHHHHcCHHH--HHHHHHHHHHHHHHHhccHHHHHhh
Confidence 456888877766 9999999999999988877766553
No 11
>d1a56a_ a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europaea [TaxId: 915]}
Probab=22.44 E-value=32 Score=22.17 Aligned_cols=24 Identities=17% Similarity=0.356 Sum_probs=17.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhch
Q psy146 16 ASPESFNPIREKEFRNMVVWLEDQK 40 (253)
Q Consensus 16 ~~~~~~n~~d~~efr~lI~WLEdqk 40 (253)
++|..-+++|+ |.+.++.||.-+|
T Consensus 58 ~Mp~~~~Lsd~-ei~~l~~Yl~slk 81 (81)
T d1a56a_ 58 PMPPNVNVSDA-DAKALADWILTLK 81 (81)
T ss_dssp CBCSCCSSSSH-HHHHHHHHHHHHC
T ss_pred ccccccCCCHH-HHHHHHHHHHHcC
Confidence 33433367777 9999999998765
No 12
>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.22 E-value=13 Score=21.23 Aligned_cols=10 Identities=40% Similarity=0.680 Sum_probs=8.1
Q ss_pred cccccccCCC
Q psy146 244 TDTKLGKVGF 253 (253)
Q Consensus 244 TD~kLGKVGr 253 (253)
-|-|||.||+
T Consensus 6 C~cRLGEVG~ 15 (33)
T d1j2oa2 6 CGCRLGEVGR 15 (33)
T ss_dssp SCSCCCCSSS
T ss_pred ccccccchhh
Confidence 3679999995
Done!