RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy146
(253 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 2e-05
Identities = 42/253 (16%), Positives = 80/253 (31%), Gaps = 68/253 (26%)
Query: 29 FRNMV-VWLED--QKIRIYKIED--RAELRKLESPHWMNSFHQYCTDVGLPITLLSTPLE 83
+++++ V+ + ++D ++ L K E H + S + L TLLS E
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 84 QIEWLLGHASRLEYADNVDQYKSQTAEFVSSNQSSAPKVVSTNPLDNLNFDSPEFKKG-- 141
++ + R+ Y + K++ Q S + D L D+ F K
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQ------RQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 142 -----VNSLAEKL-KIRPHPN---H---------LTTLEACCKLISARLNEDALAHPEFV 183
L + L ++RP N + L+ C L+ +F
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVC-------LSYKVQCKMDFK 183
Query: 184 I------PKGKPFPFLEI----------------DNGFTLPDPVLNKAAKILNLLYIHD- 220
I P LE+ D+ + + + A++ LL
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 221 ------LRDLQTK 227
L ++Q
Sbjct: 244 ENCLLVLLNVQNA 256
Score = 39.5 bits (91), Expect = 8e-04
Identities = 40/280 (14%), Positives = 80/280 (28%), Gaps = 87/280 (31%)
Query: 2 SHSNIIRKLKTLGYASPESFN--PIREKEFRNMVVWLEDQKIRIYKIEDRAE----LRKL 55
S ++ L+ L Y ++ + + ++ + R+ K + L +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 56 ESPHWMNSFHQYC-----------TDVGLPITLLSTPLEQIEWLLGHASRLEYADNVDQY 104
++ N+F+ C TD T L+ L D+
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----------DEV 303
Query: 105 KSQTAEFVSSNQSSAPK-VVSTNPLDNLNFDSPEFKKGVNSLAEKLKIRPHPNHL----- 158
KS +++ P+ V++TNP ++ +AE + R
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPR------------RLSIIAESI--RDGLATWDNWKH 349
Query: 159 TTLEACCKLISARLNEDALAHPEF--------VIPKGKPFP--FLEI------------- 195
+ +I + LN L E+ V P P L +
Sbjct: 350 VNCDKLTTIIESSLN--VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 196 ---------------DNGFTLPDPVLNKAAKILNLLYIHD 220
++ ++P L K+ N +H
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Score = 37.9 bits (87), Expect = 0.002
Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 65/226 (28%)
Query: 22 NPIREKEFRNMVVWLEDQKIRI-YKIEDRAELRKLESPHWMNSFHQYCT----DVGLPIT 76
++++ I + + AE RK+ F + + +P
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--------FDR-LSVFPPSAHIPTI 390
Query: 77 LLSTPLEQIEWLLGHASRLEYADNVDQYKSQ--TAEFVSSNQSSAPKVVSTNPLDNLNFD 134
LLS + W +V + + S K
Sbjct: 391 LLS-----LIW-----------FDVIKSDVMVVVNKLH--KYSLVEK------------Q 420
Query: 135 SPEFKKGVNSLAEKLKIRPHPNHLTTLEACCKLISARLNEDALAHPEFVIPKGKPFPFLE 194
E + S+ L+++ + L ++ + + P
Sbjct: 421 PKESTISIPSIY--LELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPY-------- 468
Query: 195 IDN------GFTLPDPVLNKAAKILNLLYIHDLRDLQTKINEAIVA 234
+D G L + + + ++++ D R L+ KI A
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDSTA 513
Score = 31.7 bits (71), Expect = 0.23
Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 38/155 (24%)
Query: 36 LEDQKIRIYKIEDRAELRKLESPHWMNSFHQYCTDVGLPITLLSTPLEQIEWLLG-HASR 94
L + Y I + L P+ F+ + +G H
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH---------------------IGHHLKN 483
Query: 95 LEYADNVDQYKS--QTAEFVSS---NQSSAPKVVS--TNPLDNLNF-------DSPEFKK 140
+E+ + + ++ F+ + S+A N L L F + P++++
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 141 GVNSLAEKLKIRPHPNHLTTLEACCKLISARLNED 175
VN++ + L +L + L A + ED
Sbjct: 544 LVNAILDFL--PKIEENLICSKYTDLLRIALMAED 576
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 2e-04
Identities = 54/336 (16%), Positives = 90/336 (26%), Gaps = 146/336 (43%)
Query: 10 LKTLGYASPESFNPIREKEFRNMVVWLEDQKIRIYKIEDRAELRKLES-----P-HWMNS 63
L L + + + N++ WLE+ + + L S P +
Sbjct: 195 LSELI-RTTLDAEKVFTQGL-NILEWLENP-------SNTPDKDYLLSIPISCPLIGVIQ 245
Query: 64 FHQY---CTDVGLPITLLSTPLE---QIEWLLGHASRL-------------EYADNVDQ- 103
Y +G TP E ++ GH+ L + +V +
Sbjct: 246 LAHYVVTAKLLGF------TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 104 --------YKSQTAEFVSSNQSSAPKVVSTNPLDNLNFDSPEFKKGVNSLAEKLKIRPHP 155
+ A N S P ++ DS E +GV P P
Sbjct: 300 ITVLFFIGVRCYEA---YPNTSLPPSILE---------DSLENNEGV----------PSP 337
Query: 156 ----NHLT--TLEACCKLISARLNED-----AL--AHPEFVI------------------ 184
++LT ++ ++ L +L V+
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 185 -PKGK-----PFP---------FLEIDNGFTLP--DPVLNKAAKILNL------------ 215
P G PF FL + P +L A+ ++N
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPV----ASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 216 -LYI--------HDLRDLQTKINEAIVAVQTVTANP 242
+ I DLR L I+E I V + P
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERI--VDCIIRLP 487
Score = 34.3 bits (78), Expect = 0.040
Identities = 36/198 (18%), Positives = 62/198 (31%), Gaps = 62/198 (31%)
Query: 79 STPLEQIEWLLGHASRLEYADNVDQYKSQTAEFVSSNQSSAPKVVSTNPLDNLNFDSPEF 138
+TP E + LG+ S L V Q+ V L F++ +
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQ----------------VLNLCLT--EFEN-CY 95
Query: 139 KKG--VNSLAEKLKIRPHPNHLTTLEACCKLISARLNEDALAHPEFVIPKGKPFPFLEID 196
+G +++LA KL + TTL +LI + +A +PF
Sbjct: 96 LEGNDIHALAAKL----LQENDTTLVKTKELIKNYITARIMA--------KRPFD----- 138
Query: 197 NGFTLPDPVLNKA-----AKIL--------NLLYIHDLRDLQTK--------INEAIVAV 235
+ L +A A+++ Y +LRDL I + +
Sbjct: 139 ---KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 236 QTVTANPKTDTKLGKVGF 253
+ K+ G
Sbjct: 196 SELIRTTLDAEKVFTQGL 213
Score = 30.8 bits (69), Expect = 0.58
Identities = 40/267 (14%), Positives = 82/267 (30%), Gaps = 109/267 (40%)
Query: 7 IRK-LKTLGYASPESFNPIREKEFRNMVVWLEDQKIRIYKIE-DRAELRKLESPHWMNSF 64
IR+ + + + EK F+ + ++ Y ++ L + F
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEI-----NEHSTSYTFRSEKGLLSATQ-------F 1731
Query: 65 HQYCTDVGLP-ITLLS-TPLEQI-EWLL--------GHASRL-EYADNVDQYKSQTAEFV 112
Q P +TL+ E + L GH S L EY
Sbjct: 1732 TQ-------PALTLMEKAAFEDLKSKGLIPADATFAGH-S-LGEY--------------- 1767
Query: 113 SSNQSSAPKVVSTNPLDNLNFDSPEFKKGVNSLAEKLKI---R--------PHPNHLTTL 161
+A + S V S+ +++ R P +
Sbjct: 1768 -----AA--LASLA--------------DVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 162 EACCKL----ISARLNEDALAHPEFVIPK-----GKPFPFLEIDNGFTLPDPV------- 205
+ ++A +++AL ++V+ + G +EI N + + +
Sbjct: 1807 YGMIAINPGRVAASFSQEAL---QYVVERVGKRTGW---LVEIVN-YNVENQQYVAAGDL 1859
Query: 206 --LNKAAKILNLLYIH--DLRDLQTKI 228
L+ +LN + + D+ +LQ +
Sbjct: 1860 RALDTVTNVLNFIKLQKIDIIELQKSL 1886
Score = 28.1 bits (62), Expect = 4.0
Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 40/130 (30%)
Query: 3 HSNIIRKLKTLGYASPESFNPIREKEFRNMVVWL-EDQKIRIYKIEDRAELRKLES---- 57
HS++ L AS I + +N V + +D +I +Y D ++LR L
Sbjct: 428 HSHL------LVPASDL----INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 58 ---------P-HWMNSFHQYCT---DVGLP-----ITLLSTPLEQ---IEWLLGHASRLE 96
P W + T D G P + +L+ + + ++ A L+
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFG-PGGASGLGVLTHRNKDGTGVRVIV--AGTLD 534
Query: 97 YADNVDQ-YK 105
+ D +K
Sbjct: 535 INPDDDYGFK 544
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.4 bits (86), Expect = 0.002
Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 32/102 (31%)
Query: 18 PESFNPIREKEFRNMVVWLEDQKIRIYKIEDRAELRKLESPHWMNSFHQYCTDVGLPITL 77
PES IR+ W E+Q+ R+ + D A + W +
Sbjct: 84 PES---IRK--------WREEQRKRL-QELDAASKVMEQE--WREKAKKD---------- 119
Query: 78 LSTPLEQIEWLLGHASRLEYADNVDQYKSQTAEFVSSNQSSA 119
LE EW + ++E N + F +
Sbjct: 120 ----LE--EWNQRQSEQVE--KNKINNRIADKAFYQQPDADI 153
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.047
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 17/43 (39%)
Query: 48 DRAELRKLESPHWMNSFHQYCTDVGLPITLLSTP-L---EQIE 86
++ L+KL++ S Y D S P L +E
Sbjct: 18 EKQALKKLQA-----SLKLYADD--------SAPALAIKATME 47
Score = 27.2 bits (59), Expect = 3.2
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 37 EDQKIRIYKIEDRAELRKLESP 58
E Q ++ K++ L KL +
Sbjct: 18 EKQALK--KLQAS--L-KLYAD 34
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB
repeat; 2.30A {Trypanosoma brucei brucei}
Length = 260
Score = 28.7 bits (63), Expect = 1.6
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 13 LGYASPESFNPIREKEFRNMVVWLEDQKIRIYKIED----RAELRKLESPHWMNSFHQYC 68
L A+ E+ P+ E R + L D ++R I R+L N +Y
Sbjct: 65 LMIAAEEAQQPLPLAEVRCLDSSLGDVELRRADIVRELHLEDSERRLRDTFADNLLVKYI 124
Query: 69 TDVGLPITLLSTPLEQIEWLLGHASRLEYADNVDQ 103
+GL ++L +++ LG L D+
Sbjct: 125 LKLGLQVSLYLPHCKRLLTALGRVEALAGLTVADR 159
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 28.6 bits (64), Expect = 2.1
Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 42 RIYKIEDRAELRKLESPHW 60
++ IED E++ L +W
Sbjct: 289 KVVSIEDTREIK-LYHENW 306
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 28.4 bits (64), Expect = 2.5
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 90 GHASRLEYADNVDQYKSQTAEFVSSNQSSAPKVVSTNPLDNLNFDSPEFKKGVNSLAEKL 149
G +R+ Y D +Y+ + Q + + L +L+ D ++K G K+
Sbjct: 708 GFPNRILYGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHT----KV 763
Query: 150 KIRPHPNHLTTLE 162
+ L LE
Sbjct: 764 FFKAG--LLGLLE 774
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde
hydrolase like P structural genomics, PSI-2, protein
structure initiative; 2.30A {Oleispira antarctica}
Length = 277
Score = 27.2 bits (60), Expect = 5.8
Identities = 20/152 (13%), Positives = 43/152 (28%), Gaps = 21/152 (13%)
Query: 56 ESPHWMNSFHQYCTDVGLPITL-------LSTPLEQIEWLLGHASRLEYADNVDQYKSQT 108
S + +F + G+ +T + E I +LG++ ++ S
Sbjct: 29 GSLAPVYAFMELFKQEGIEVTQAEAREPMGTEKSEHIRRMLGNSRIANAWLSIKGQASNE 88
Query: 109 AEFVSSNQSSAPKVVSTNPLDNLNFDSPEFKKGVNSLAEKLKIRPHPNHLTTLEACCKLI 168
+ AP + G + +KL + T ++
Sbjct: 89 EDIKRLYDLFAPIQTRIVA------QRSQLIPGWKEVFDKLIAQGIKVGGNT-GYGPGMM 141
Query: 169 SARLNEDALAHPEF-------VIPKGKPFPFL 193
+ L + +G+PFP +
Sbjct: 142 APALIAAKEQGYTPASTVFATDVVRGRPFPDM 173
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 26.8 bits (60), Expect = 7.1
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 28 EFRNMVVWLEDQKIR-----IYKIEDRAE-LRKLESPH 59
++V ++ ++ YK + E L L+
Sbjct: 318 ALEDLVGAVDRLGLKPVIDMRYKFTEVPEALAHLDRGP 355
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0462 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,832,512
Number of extensions: 220485
Number of successful extensions: 589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 18
Length of query: 253
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 162
Effective length of database: 4,160,982
Effective search space: 674079084
Effective search space used: 674079084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.0 bits)