RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy146
         (253 letters)



>d2izpa1 a.250.1.1 (A:1035-1301) Putative membrane antigen BipD
           {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 267

 Score = 28.7 bits (64), Expect = 0.59
 Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 41  IRIYKIEDRAELRKLESPHWMNSFHQYCTDVGLPITLLSTPLEQ--IEWLLGHASRLE-Y 97
           +R +    R  L +LE+     +      + G+       P+ Q  ++ +    S ++ Y
Sbjct: 58  VRGHARAQRNLLERLETELLGGTLDTAGDEGGIQ----PDPILQGLVDVIGQGKSDIDAY 113

Query: 98  ADNVDQYKSQTAEFVSSNQSSAPKVVSTNPLDNLNFDSPEFKKGVNSLAEKLK 150
           A  V+   ++  + V+   S     +S     N+  D  + K  +  + + L 
Sbjct: 114 ATIVEGL-TKYFQSVADVMSKLQDYISAKDDKNMKIDGGKIKALIQQVIDHLP 165


>d1f00i3 d.169.1.3 (I:842-939) Intimin {Escherichia coli [TaxId:
           562]}
          Length = 98

 Score = 24.8 bits (54), Expect = 5.5
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 9/48 (18%)

Query: 98  ADNVDQYKS---------QTAEFVSSNQSSAPKVVSTNPLDNLNFDSP 136
           A+  + YKS         QTA+   S  +S   +V  NPL+N+     
Sbjct: 43  ANKYEYYKSSQTIISWVQQTAQDAKSGVASTYDLVKQNPLNNIKASES 90


>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1,
           LSD1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 24.3 bits (53), Expect = 7.2
 Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 18/64 (28%)

Query: 131 LNFDS---------PEFKKGVNSLAEK-LKIRPH--------PNHLTTLEACCKLISARL 172
           L  D          P+   G     +  L IR          P    T EA  + + A  
Sbjct: 12  LPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPY 71

Query: 173 NEDA 176
           N D 
Sbjct: 72  NSDT 75


>d1ifwa_ a.144.1.1 (A:) poly(A) binding protein {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 92

 Score = 24.0 bits (52), Expect = 8.7
 Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 14/56 (25%)

Query: 192 FLEIDNGFTLPDPVLNKAAKILNLLYIHDLRDLQTKINEAIVAVQTVTANPKTDTK 247
            L++               ++  LL        +    EA  A ++     +  T+
Sbjct: 49  ILDLPP------------QEVFPLL--ESDELFEQHYKEASAAYESFKKEQEQQTE 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0619    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 947,330
Number of extensions: 43593
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 6
Length of query: 253
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,268,006
Effective search space: 215561020
Effective search space used: 215561020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)