BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14602
(66 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17G65|SMG8_AEDAE Protein SMG8 OS=Aedes aegypti GN=AAEL003157 PE=3 SV=1
Length = 916
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 1 MEHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVEC-GCVALEHYPFPVFQPS 59
M+HSSG+ F+S+C+CGRTQ REDP+++R+ANYEFYQ + C C LE FPVF+PS
Sbjct: 487 MDHSSGVVFVSACNCGRTQGHREDPYTIRQANYEFYQLIAKSCSNCTLLERIKFPVFEPS 546
Query: 60 TEDFRC 65
+ DFR
Sbjct: 547 SSDFRA 552
>sp|B0W730|SMG8_CULQU Protein SMG8 OS=Culex quinquefasciatus GN=CPIJ003128 PE=3 SV=1
Length = 912
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVEC-GCVALEHYPFPVFQPST 60
EHSSG+ F+S+C+CGRTQ REDP+++R+ NY+FYQ + C C LE FPVF+PS+
Sbjct: 486 EHSSGVIFVSACNCGRTQGHREDPYTIRQGNYDFYQIIAKSCSSCNVLERVKFPVFEPSS 545
Query: 61 EDFR 64
DFR
Sbjct: 546 NDFR 549
>sp|B3N538|SMG8_DROER Protein SMG8 OS=Drosophila erecta GN=GG10361 PE=3 SV=1
Length = 949
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+S + +SSC+CGRTQ +REDPFS+R+ANYEFY+++ C CV ++HY FPVF+PS
Sbjct: 485 KHNSAVIHISSCNCGRTQGRREDPFSMRQANYEFYEHIAQMCNLCVKVKHYKFPVFEPSV 544
Query: 61 EDFRC 65
D+R
Sbjct: 545 SDYRA 549
>sp|Q9VKQ6|SMG8_DROME Protein SMG8 OS=Drosophila melanogaster GN=CG6729 PE=2 SV=1
Length = 944
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +SSC+CGRTQ +REDPF+LR+ANYEFY+++ C CV ++ Y FP+F+PS
Sbjct: 485 KHNSGVIHISSCNCGRTQGRREDPFNLRQANYEFYEHIAQMCNLCVKVKQYQFPIFEPSV 544
Query: 61 EDFRC 65
D+R
Sbjct: 545 SDYRA 549
>sp|B4HWV2|SMG8_DROSE Protein SMG8 OS=Drosophila sechellia GN=GM11479 PE=3 SV=1
Length = 927
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +S+C+CGRTQ +REDPF+LR+ANYEFY+++ C CV ++ Y FP+F+PS
Sbjct: 468 KHNSGVIHISTCNCGRTQGRREDPFNLRQANYEFYEHIAQMCNLCVKVKQYQFPIFEPSV 527
Query: 61 EDFRC 65
D+R
Sbjct: 528 SDYRA 532
>sp|B4MV81|SMG8_DROWI Protein SMG8 OS=Drosophila willistoni GN=GK15451 PE=3 SV=1
Length = 953
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +SSC+CGRTQ +REDPF+LR+ANYEFY+ + C CV ++ Y FP+F+PS
Sbjct: 491 KHASGIIHVSSCNCGRTQGRREDPFTLRQANYEFYEYMAQICNLCVKVKQYQFPIFEPSV 550
Query: 61 EDFRC 65
D+R
Sbjct: 551 SDYRA 555
>sp|B4P0U1|SMG8_DROYA Protein SMG8 OS=Drosophila yakuba GN=GE13372 PE=3 SV=1
Length = 950
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +SSC+CGRTQ +REDPF+LR+ANYEFY+++ C CV ++ Y P+F+PS
Sbjct: 485 KHNSGVIHISSCNCGRTQGRREDPFNLRQANYEFYEHIAQMCNLCVKVKQYQLPIFEPSV 544
Query: 61 EDFRC 65
D+R
Sbjct: 545 SDYRA 549
>sp|B4KKN5|SMG8_DROMO Protein SMG8 OS=Drosophila mojavensis GN=GI17817 PE=3 SV=1
Length = 967
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+HSSG+ +SSC+CGRTQ +REDPF+LR+ANY++Y+ + V C CV ++ + FP+F PS
Sbjct: 482 KHSSGIVHISSCNCGRTQGRREDPFTLRQANYDYYEQLAVMCNLCVKVKKFQFPLFTPSI 541
Query: 61 EDFRC 65
D+R
Sbjct: 542 SDYRA 546
>sp|B4Q9T2|SMG8_DROSI Protein SMG8 OS=Drosophila simulans GN=GD22229 PE=3 SV=1
Length = 944
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +S+C+CGRTQ +REDPF+LR+ANYEFY+ + C CV ++ Y FP+F+PS
Sbjct: 485 KHNSGVIHISTCNCGRTQGRREDPFNLRQANYEFYELIAQMCNLCVKVKQYQFPIFEPSV 544
Query: 61 EDFRC 65
D+R
Sbjct: 545 SDYRA 549
>sp|B3MJV4|SMG8_DROAN Protein SMG8 OS=Drosophila ananassae GN=GF14070 PE=3 SV=1
Length = 939
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +SSC+CGRTQ +REDPF+LR+ANY+FY+ + C CV ++ Y FP+F+PS
Sbjct: 483 KHNSGVIHISSCNCGRTQGRREDPFNLRQANYDFYELIAQICNLCVKVKQYQFPIFEPSV 542
Query: 61 EDFRC 65
D+R
Sbjct: 543 SDYRA 547
>sp|B4LS82|SMG8_DROVI Protein SMG8 OS=Drosophila virilis GN=GJ17645 PE=3 SV=1
Length = 962
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+HSSG+ +SSC+CGRTQ +REDPF+LR+ANY++Y+++ C CV ++ + PVF PS
Sbjct: 482 KHSSGIVHISSCNCGRTQGRREDPFTLRQANYDYYEHMAAMCNLCVKVKKFQLPVFTPSI 541
Query: 61 EDFRC 65
D+R
Sbjct: 542 SDYRA 546
>sp|B4JE52|SMG8_DROGR Protein SMG8 OS=Drosophila grimshawi GN=GH11308 PE=3 SV=1
Length = 945
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+HSSG+ +SSC+CGRT +REDP++LR+ANY++Y+++ V C CV ++ + FPVF PS
Sbjct: 482 KHSSGVVHISSCNCGRTLGRREDPYTLRQANYDYYEHMAVMCNLCVKVKRFQFPVFTPSI 541
Query: 61 EDFRC 65
D+R
Sbjct: 542 SDYRA 546
>sp|B5E0H4|SMG8_DROPS Protein SMG8 OS=Drosophila pseudoobscura pseudoobscura GN=GA24994
PE=3 SV=1
Length = 953
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +SSC+CGRTQ +REDPFSLR+ANYEFY+++ C CV ++ + FP+F+P+
Sbjct: 489 KHNSGVIHVSSCNCGRTQGRREDPFSLRQANYEFYEHMVKMCNLCVKVKQFKFPIFEPTN 548
Query: 61 EDFRC 65
++R
Sbjct: 549 NEYRA 553
>sp|B4GH42|SMG8_DROPE Protein SMG8 OS=Drosophila persimilis GN=GL17013 PE=3 SV=1
Length = 953
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +SSC+CGRTQ +REDPFSLR+ANYEFY+++ C CV ++ + FP+F+P+
Sbjct: 489 KHNSGVIHVSSCNCGRTQGRREDPFSLRQANYEFYEHMVKMCNLCVKVKQFKFPIFEPTN 548
Query: 61 EDFRC 65
++R
Sbjct: 549 NEYRA 553
>sp|Q0VA04|SMG8_XENTR Protein smg8 OS=Xenopus tropicalis GN=smg8 PE=2 SV=1
Length = 915
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 3 HSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTED 62
H+S R SC+CG+ QA REDPF ++ ANY+FYQ + +C C L+H FP+FQPST D
Sbjct: 522 HNSRARSTGSCNCGKKQAPREDPFDIKSANYDFYQILEEKC-CGKLDHITFPIFQPSTPD 580
>sp|Q8VE18|SMG8_MOUSE Protein SMG8 OS=Mus musculus GN=Smg8 PE=2 SV=1
Length = 991
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 3 HSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTED 62
H+S R +C+CGR QA R+DPF ++ ANY+FYQ + +C C L+H FPVF+PST D
Sbjct: 601 HNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKC-CGKLDHINFPVFEPSTPD 659
>sp|Q8ND04|SMG8_HUMAN Protein SMG8 OS=Homo sapiens GN=SMG8 PE=1 SV=1
Length = 991
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 1 MEHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPST 60
+ H+S R +C+CGR QA R+DPF ++ ANY+FYQ + +C C L+H FPVF+PST
Sbjct: 599 LYHNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKC-CGKLDHINFPVFEPST 657
Query: 61 ED 62
D
Sbjct: 658 PD 659
>sp|A1A4J7|SMG8_BOVIN Protein SMG8 OS=Bos taurus GN=SMG8 PE=2 SV=2
Length = 999
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 1 MEHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPST 60
+ H+S R +C+CGR QA R+DPF ++ ANY+FYQ + +C C L+H FPVF+PST
Sbjct: 607 LYHNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKC-CGKLDHINFPVFEPST 665
Query: 61 ED 62
D
Sbjct: 666 PD 667
>sp|A8WP66|SMG8_CAEBR Protein smg-8 OS=Caenorhabditis briggsae GN=smg-8 PE=3 SV=1
Length = 871
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 3 HSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTED 62
H + +S+C CG Q R++PF+L+EAN++FY++ C C L Y F ++Q TE+
Sbjct: 452 HDASNTLVSTCVCGNKQLVRQEPFTLKEANFDFYEHPDFNC-CKGLWRYQFQLYQEDTEE 510
>sp|O62301|SMG8_CAEEL Protein smg-8 OS=Caenorhabditis elegans GN=smg-8 PE=3 SV=3
Length = 873
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 3 HSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTED 62
H + +S+C CGR Q R +PFS++EAN +FY + +C C L Y F ++Q +E+
Sbjct: 456 HDASNTMISTCVCGRKQLIRPEPFSVKEANSDFYDHPDFKC-CRRLWRYQFQLYQEDSEE 514
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,239,484
Number of Sequences: 539616
Number of extensions: 763793
Number of successful extensions: 1345
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 20
length of query: 66
length of database: 191,569,459
effective HSP length: 38
effective length of query: 28
effective length of database: 171,064,051
effective search space: 4789793428
effective search space used: 4789793428
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)