Query psy14602
Match_columns 66
No_of_seqs 51 out of 53
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 15:55:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qlm_A Methenyltetrahydrometha 56.3 2.2 7.5E-05 32.1 -0.2 15 24-38 263-279 (316)
2 4gvq_A Methenyltetrahydrometha 39.9 6.6 0.00023 29.4 0.2 15 25-39 260-276 (316)
3 1r94_A Protein YFHF; tetrameri 28.8 12 0.00039 23.0 -0.1 16 10-25 96-111 (118)
4 2zxe_G FXYD10, phospholemman-l 24.5 16 0.00054 22.4 0.0 17 12-28 42-58 (74)
5 1g0y_I Antagonist peptide AF10 20.6 17 0.00059 18.2 -0.3 16 23-38 1-16 (26)
6 4axd_A Inositol-pentakisphosph 18.8 41 0.0014 26.1 1.2 30 19-48 311-341 (456)
7 4fd4_A Arylalkylamine N-acetyl 18.3 35 0.0012 20.1 0.6 33 30-63 170-208 (217)
8 3lss_A Seryl-tRNA synthetase; 18.0 28 0.00094 26.9 0.1 25 1-25 381-406 (484)
9 3tbo_A Zinc finger, CDGSH-type 17.2 37 0.0013 19.8 0.5 10 11-20 23-32 (60)
10 1x0g_A ISCA; [2Fe-2S], biosynt 17.1 45 0.0015 19.9 0.9 12 10-21 98-109 (112)
No 1
>1qlm_A Methenyltetrahydromethanopterin cyclohydrolase; methanogenesis, biological methanogenesis; 2.0A {Methanopyrus kandleri} SCOP: d.147.1.1
Probab=56.28 E-value=2.2 Score=32.09 Aligned_cols=15 Identities=47% Similarity=1.072 Sum_probs=12.8
Q ss_pred CCCc--hhhhchHHHHc
Q psy14602 24 DPFS--LREANYEFYQN 38 (66)
Q Consensus 24 DPF~--lk~AN~~FY~~ 38 (66)
-||- +|+||+|||+.
T Consensus 263 kPF~eiFk~a~~DFYkI 279 (316)
T 1qlm_A 263 KPFMKIFEEADYDFYKI 279 (316)
T ss_dssp SCHHHHHHHTTTCGGGS
T ss_pred ccHHHHHHHcCCChhhC
Confidence 4775 89999999995
No 2
>4gvq_A Methenyltetrahydromethanopterin cyclohydrolase; HET: N4M; 1.30A {Archaeoglobus fulgidus} PDB: 4gvr_A 4gvs_A*
Probab=39.91 E-value=6.6 Score=29.40 Aligned_cols=15 Identities=47% Similarity=0.995 Sum_probs=12.4
Q ss_pred CC--chhhhchHHHHcc
Q psy14602 25 PF--SLREANYEFYQNV 39 (66)
Q Consensus 25 PF--~lk~AN~~FY~~~ 39 (66)
|| .+|+||||||+.-
T Consensus 260 pF~eiFk~~~~DFykID 276 (316)
T 4gvq_A 260 PFYEIFKAANYDFYKID 276 (316)
T ss_dssp CHHHHHHHTTTCGGGSC
T ss_pred cHHHHHHHcCCChhhCC
Confidence 66 4799999999974
No 3
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=28.77 E-value=12 Score=23.05 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=1.1
Q ss_pred eeecccCccccccCCC
Q psy14602 10 MSSCDCGRTQAQREDP 25 (66)
Q Consensus 10 ~saCnCGR~q~~ReDP 25 (66)
.++|.||.+......|
T Consensus 96 ~~~CgCG~SF~~~~~~ 111 (118)
T 1r94_A 96 KDECGCGESFKLAAAL 111 (118)
T ss_dssp CC--------------
T ss_pred CCCCCCCCCcCCCCCc
Confidence 4689999998765543
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=24.47 E-value=16 Score=22.36 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=0.5
Q ss_pred ecccCccccccCCCCch
Q psy14602 12 SCDCGRTQAQREDPFSL 28 (66)
Q Consensus 12 aCnCGR~q~~ReDPF~l 28 (66)
=|.|++.|..|..|=+-
T Consensus 42 kcrCk~~qk~~~~p~d~ 58 (74)
T 2zxe_G 42 KCRCKFNQNKRTRSNSG 58 (74)
T ss_dssp C----------------
T ss_pred ccccCCCCCCCCCCCcc
Confidence 48999999999887554
No 5
>1g0y_I Antagonist peptide AF10847; immunoglobulin, immune system; 3.00A {Homo sapiens} SCOP: k.19.1.1
Probab=20.65 E-value=17 Score=18.18 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=12.5
Q ss_pred CCCCchhhhchHHHHc
Q psy14602 23 EDPFSLREANYEFYQN 38 (66)
Q Consensus 23 eDPF~lk~AN~~FY~~ 38 (66)
|-||+-++.|--++|-
T Consensus 1 etpftweesnayywqp 16 (26)
T 1g0y_I 1 ETPFTWEESNAYYWQP 16 (26)
T ss_dssp CCCCCHHHHHHHEECT
T ss_pred CCccceecccceeecc
Confidence 5699999999766554
No 6
>4axd_A Inositol-pentakisphosphate 2-kinase; transferase, inositol kinase, phytic acid, protein kinase, I signalling; HET: ANP CIT; 2.05A {Arabidopsis thaliana} PDB: 4axc_A 4aqk_A* 4axf_A* 4axe_A* 2xam_A* 2xal_A* 2xan_A* 2xao_A* 2xar_A* 3udz_A* 3udt_A* 3uds_A*
Probab=18.81 E-value=41 Score=26.09 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=24.6
Q ss_pred ccccCCCCchhhhchHHHHcccceec-cccc
Q psy14602 19 QAQREDPFSLREANYEFYQNVGVECG-CVAL 48 (66)
Q Consensus 19 q~~ReDPF~lk~AN~~FY~~~~~~C~-C~~l 48 (66)
|.+|=|++||+-|.+.||..++..|. |..|
T Consensus 311 ~~Q~lD~lDIEg~~~ly~~~v~q~~~~~~~l 341 (456)
T 4axd_A 311 EIQKLDKLDIEGAIHCYYDIINQPCPICREG 341 (456)
T ss_dssp HHHTTCCSCHHHHHHHHHHHTTCCCTTTTTS
T ss_pred HHhcccccchhHHHHHHHHHhcCcchHHHHH
Confidence 56779999999999999988876675 6555
No 7
>4fd4_A Arylalkylamine N-acetyltransferase like 5B; GNAT; 1.95A {Aedes aegypti}
Probab=18.34 E-value=35 Score=20.07 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=21.2
Q ss_pred hhchHHHHcccceeccccceeeee------ccccCCCCCc
Q psy14602 30 EANYEFYQNVGVECGCVALEHYPF------PVFQPSTEDF 63 (66)
Q Consensus 30 ~AN~~FY~~~~~~C~C~~l~~i~F------pvf~ps~~d~ 63 (66)
.++..||+.+.++. -+.+.--.| +||.|..++-
T Consensus 170 ~~a~~~Y~k~GF~~-~~~~~~~~~~~~~g~~~f~~~~~~~ 208 (217)
T 4fd4_A 170 VFSVKLAEKLGMEC-ISQLALGDYRDEKGEKLFEPLDVHQ 208 (217)
T ss_dssp HHHHHHHHHTTCEE-EEEEEGGGCCCTTCCCCBCCSSSSC
T ss_pred HHHHHHHHHCCCeE-EEeEeHHHhccCCCceeeCCCCccc
Confidence 56789999999888 444333333 4666666553
No 8
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=17.98 E-value=28 Score=26.85 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=20.1
Q ss_pred CCcCCCceeeeec-ccCccccccCCC
Q psy14602 1 MEHSSGLRFMSSC-DCGRTQAQREDP 25 (66)
Q Consensus 1 ~~HsSg~~~~saC-nCGR~q~~ReDP 25 (66)
||...+++-|++| |||--|+.|.+-
T Consensus 381 ~P~~~~~~EIsS~Snc~dyqArr~~i 406 (484)
T 3lss_A 381 FPASGAFRELVSCSNCTDYQSQSVNC 406 (484)
T ss_dssp ETTTTEEEEEEEEEECTTHHHHHHTC
T ss_pred cCCCCCeeEEEEecCcccccccccce
Confidence 3556678999999 999999988753
No 9
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal binding protein; 1.50A {Pyrobaculum calidifontis}
Probab=17.18 E-value=37 Score=19.77 Aligned_cols=10 Identities=30% Similarity=0.916 Sum_probs=8.1
Q ss_pred eecccCcccc
Q psy14602 11 SSCDCGRTQA 20 (66)
Q Consensus 11 saCnCGR~q~ 20 (66)
.=|.||+|..
T Consensus 23 ~lC~CG~S~n 32 (60)
T 3tbo_A 23 YLCRCGHSGS 32 (60)
T ss_dssp EECCSSCCTT
T ss_pred EEEECCCCCC
Confidence 6799999864
No 10
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=17.09 E-value=45 Score=19.93 Aligned_cols=12 Identities=25% Similarity=0.673 Sum_probs=9.3
Q ss_pred eeecccCccccc
Q psy14602 10 MSSCDCGRTQAQ 21 (66)
Q Consensus 10 ~saCnCGR~q~~ 21 (66)
.++|.||.+...
T Consensus 98 ~~~CgCG~SF~~ 109 (112)
T 1x0g_A 98 SQTCGCGMAFRV 109 (112)
T ss_dssp SEECSSSSEEEC
T ss_pred CcCCCCCCcccc
Confidence 468999988654
Done!