Your job contains 1 sequence.
>psy14602
MEHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPST
EDFRCR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14602
(66 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q17G65 - symbol:AAEL003157 "Protein SMG8" speci... 222 4.1e-17 1
UNIPROTKB|B3N538 - symbol:GG10361 "Protein SMG8" species:... 218 1.1e-16 1
FB|FBgn0032296 - symbol:CG6729 species:7227 "Drosophila m... 214 3.0e-16 1
UNIPROTKB|B0W730 - symbol:CPIJ003128 "Protein SMG8" speci... 211 6.0e-16 1
UNIPROTKB|B4HWV2 - symbol:GM11479 "Protein SMG8" species:... 211 6.2e-16 1
UNIPROTKB|B4MV81 - symbol:GK15451 "Protein SMG8" species:... 209 1.1e-15 1
UNIPROTKB|B4P0U1 - symbol:GE13372 "Protein SMG8" species:... 208 1.3e-15 1
UNIPROTKB|B4Q9T2 - symbol:GD22229 "Protein SMG8" species:... 207 1.7e-15 1
UNIPROTKB|B3MJV4 - symbol:GF14070 "Protein SMG8" species:... 206 2.2e-15 1
UNIPROTKB|B4KKN5 - symbol:GI17817 "Protein SMG8" species:... 204 3.7e-15 1
UNIPROTKB|B4GH42 - symbol:GL17013 "Protein SMG8" species:... 201 7.5e-15 1
UNIPROTKB|B5E0H4 - symbol:GA24994 "Protein SMG8" species:... 201 7.5e-15 1
UNIPROTKB|B4JE52 - symbol:GH11308 "Protein SMG8" species:... 198 1.6e-14 1
UNIPROTKB|B4LS82 - symbol:GJ17645 "Protein SMG8" species:... 198 1.6e-14 1
RGD|1306862 - symbol:Smg8 "smg-8 homolog, nonsense mediat... 173 3.7e-13 1
UNIPROTKB|Q0VA04 - symbol:smg8 "Protein smg8" species:836... 180 1.3e-12 1
UNIPROTKB|Q8ND04 - symbol:SMG8 "Protein SMG8" species:960... 173 7.8e-12 1
MGI|MGI:1921383 - symbol:Smg8 "smg-8 homolog, nonsense me... 173 7.8e-12 1
UNIPROTKB|A1A4J7 - symbol:SMG8 "Protein SMG8" species:991... 173 7.9e-12 1
UNIPROTKB|A8WP66 - symbol:smg-8 "Protein smg-8" species:6... 133 1.2e-07 1
WB|WBGene00010551 - symbol:smg-8 species:6239 "Caenorhabd... 122 1.8e-06 1
UNIPROTKB|O62301 - symbol:smg-8 "Protein smg-8" species:6... 122 1.8e-06 1
>UNIPROTKB|Q17G65 [details] [associations]
symbol:AAEL003157 "Protein SMG8" species:7159 "Aedes
aegypti" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] GO:GO:0000184 EMBL:CH477265 RefSeq:XP_001656499.1
UniGene:Aae.19385 PRIDE:Q17G65 EnsemblMetazoa:AAEL003157-RA
GeneID:5577419 KEGG:aag:AaeL_AAEL003157 VectorBase:AAEL003157
eggNOG:NOG253733 HOGENOM:HOG000154346 OMA:HKFHLLP OrthoDB:EOG4GHX42
PhylomeDB:Q17G65 InterPro:IPR019354 Pfam:PF10220 Uniprot:Q17G65
Length = 916
Score = 222 (83.2 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 38/65 (58%), Positives = 50/65 (76%)
Query: 1 MEHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPS 59
M+HSSG+ F+S+C+CGRTQ REDP+++R+ANYEFYQ + C C LE FPVF+PS
Sbjct: 487 MDHSSGVVFVSACNCGRTQGHREDPYTIRQANYEFYQLIAKSCSNCTLLERIKFPVFEPS 546
Query: 60 TEDFR 64
+ DFR
Sbjct: 547 SSDFR 551
>UNIPROTKB|B3N538 [details] [associations]
symbol:GG10361 "Protein SMG8" species:7220 "Drosophila
erecta" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] GO:GO:0000184 EMBL:CH954177 OrthoDB:EOG4GHX42
InterPro:IPR019354 Pfam:PF10220 RefSeq:XP_001969924.1
EnsemblMetazoa:FBtr0130415 GeneID:6542675 KEGG:der:Dere_GG10361
FlyBase:FBgn0102670 Uniprot:B3N538
Length = 949
Score = 218 (81.8 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 36/64 (56%), Positives = 51/64 (79%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+S + +SSC+CGRTQ +REDPFS+R+ANYEFY+++ C CV ++HY FPVF+PS
Sbjct: 485 KHNSAVIHISSCNCGRTQGRREDPFSMRQANYEFYEHIAQMCNLCVKVKHYKFPVFEPSV 544
Query: 61 EDFR 64
D+R
Sbjct: 545 SDYR 548
>FB|FBgn0032296 [details] [associations]
symbol:CG6729 species:7227 "Drosophila melanogaster"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:AE014134 GO:GO:0000184 eggNOG:NOG253733
OrthoDB:EOG4GHX42 InterPro:IPR019354 Pfam:PF10220
GeneTree:ENSGT00390000018533 EMBL:AY084211 EMBL:BT044208
RefSeq:NP_609449.1 UniGene:Dm.397 PaxDb:Q9VKQ6 PRIDE:Q9VKQ6
EnsemblMetazoa:FBtr0080119 GeneID:34484 KEGG:dme:Dmel_CG6729
UCSC:CG6729-RA FlyBase:FBgn0032296 InParanoid:Q9VKQ6 OMA:LRQANYE
PhylomeDB:Q9VKQ6 GenomeRNAi:34484 NextBio:788707 Bgee:Q9VKQ6
Uniprot:Q9VKQ6
Length = 944
Score = 214 (80.4 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 35/64 (54%), Positives = 51/64 (79%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +SSC+CGRTQ +REDPF+LR+ANYEFY+++ C CV ++ Y FP+F+PS
Sbjct: 485 KHNSGVIHISSCNCGRTQGRREDPFNLRQANYEFYEHIAQMCNLCVKVKQYQFPIFEPSV 544
Query: 61 EDFR 64
D+R
Sbjct: 545 SDYR 548
>UNIPROTKB|B0W730 [details] [associations]
symbol:CPIJ003128 "Protein SMG8" species:7176 "Culex
quinquefasciatus" [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] GO:GO:0000184 eggNOG:NOG253733 HOGENOM:HOG000154346
OMA:HKFHLLP OrthoDB:EOG4GHX42 InterPro:IPR019354 Pfam:PF10220
EMBL:DS231851 RefSeq:XP_001844514.1 EnsemblMetazoa:CPIJ003128-RA
GeneID:6034156 KEGG:cqu:CpipJ_CPIJ003128 VectorBase:CPIJ003128
PhylomeDB:B0W730 Uniprot:B0W730
Length = 912
Score = 211 (79.3 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 36/64 (56%), Positives = 48/64 (75%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
EHSSG+ F+S+C+CGRTQ REDP+++R+ NY+FYQ + C C LE FPVF+PS+
Sbjct: 486 EHSSGVIFVSACNCGRTQGHREDPYTIRQGNYDFYQIIAKSCSSCNVLERVKFPVFEPSS 545
Query: 61 EDFR 64
DFR
Sbjct: 546 NDFR 549
>UNIPROTKB|B4HWV2 [details] [associations]
symbol:GM11479 "Protein SMG8" species:7238 "Drosophila
sechellia" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] GO:GO:0000184 EMBL:CH480818 OrthoDB:EOG4GHX42
InterPro:IPR019354 Pfam:PF10220 RefSeq:XP_002036574.1
EnsemblMetazoa:FBtr0194464 GeneID:6612057 KEGG:dse:Dsec_GM11479
FlyBase:FBgn0166422 Uniprot:B4HWV2
Length = 927
Score = 211 (79.3 bits), Expect = 6.2e-16, P = 6.2e-16
Identities = 34/64 (53%), Positives = 51/64 (79%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +S+C+CGRTQ +REDPF+LR+ANYEFY+++ C CV ++ Y FP+F+PS
Sbjct: 468 KHNSGVIHISTCNCGRTQGRREDPFNLRQANYEFYEHIAQMCNLCVKVKQYQFPIFEPSV 527
Query: 61 EDFR 64
D+R
Sbjct: 528 SDYR 531
>UNIPROTKB|B4MV81 [details] [associations]
symbol:GK15451 "Protein SMG8" species:7260 "Drosophila
willistoni" [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] GO:GO:0000184 EMBL:CH963857 eggNOG:NOG253733
OrthoDB:EOG4GHX42 InterPro:IPR019354 Pfam:PF10220 OMA:LRQANYE
RefSeq:XP_002065440.1 EnsemblMetazoa:FBtr0246102 GeneID:6641829
KEGG:dwi:Dwil_GK15451 FlyBase:FBgn0217456 InParanoid:B4MV81
Uniprot:B4MV81
Length = 953
Score = 209 (78.6 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 35/64 (54%), Positives = 50/64 (78%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +SSC+CGRTQ +REDPF+LR+ANYEFY+ + C CV ++ Y FP+F+PS
Sbjct: 491 KHASGIIHVSSCNCGRTQGRREDPFTLRQANYEFYEYMAQICNLCVKVKQYQFPIFEPSV 550
Query: 61 EDFR 64
D+R
Sbjct: 551 SDYR 554
>UNIPROTKB|B4P0U1 [details] [associations]
symbol:GE13372 "Protein SMG8" species:7245 "Drosophila
yakuba" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] GO:GO:0000184 EMBL:CM000157 eggNOG:NOG253733
OrthoDB:EOG4GHX42 InterPro:IPR019354 Pfam:PF10220
RefSeq:XP_002088274.1 EnsemblMetazoa:FBtr0259890 GeneID:6527180
KEGG:dya:Dyak_GE13372 FlyBase:FBgn0231051 Uniprot:B4P0U1
Length = 950
Score = 208 (78.3 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 34/64 (53%), Positives = 50/64 (78%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +SSC+CGRTQ +REDPF+LR+ANYEFY+++ C CV ++ Y P+F+PS
Sbjct: 485 KHNSGVIHISSCNCGRTQGRREDPFNLRQANYEFYEHIAQMCNLCVKVKQYQLPIFEPSV 544
Query: 61 EDFR 64
D+R
Sbjct: 545 SDYR 548
>UNIPROTKB|B4Q9T2 [details] [associations]
symbol:GD22229 "Protein SMG8" species:7240 "Drosophila
simulans" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] GO:GO:0000184 EMBL:CM000361 OrthoDB:EOG4GHX42
InterPro:IPR019354 Pfam:PF10220 RefSeq:XP_002079014.1
EnsemblMetazoa:FBtr0222139 GeneID:6731879 KEGG:dsi:Dsim_GD22229
FlyBase:FBgn0193638 Uniprot:B4Q9T2
Length = 944
Score = 207 (77.9 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 34/64 (53%), Positives = 50/64 (78%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +S+C+CGRTQ +REDPF+LR+ANYEFY+ + C CV ++ Y FP+F+PS
Sbjct: 485 KHNSGVIHISTCNCGRTQGRREDPFNLRQANYEFYELIAQMCNLCVKVKQYQFPIFEPSV 544
Query: 61 EDFR 64
D+R
Sbjct: 545 SDYR 548
>UNIPROTKB|B3MJV4 [details] [associations]
symbol:GF14070 "Protein SMG8" species:7217 "Drosophila
ananassae" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] GO:GO:0000184 EMBL:CH902620 eggNOG:NOG253733
OrthoDB:EOG4GHX42 InterPro:IPR019354 Pfam:PF10220
RefSeq:XP_001963188.1 EnsemblMetazoa:FBtr0118770 GeneID:6496898
KEGG:dan:Dana_GF14070 FlyBase:FBgn0091097 InParanoid:B3MJV4
Uniprot:B3MJV4
Length = 939
Score = 206 (77.6 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 34/64 (53%), Positives = 50/64 (78%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +SSC+CGRTQ +REDPF+LR+ANY+FY+ + C CV ++ Y FP+F+PS
Sbjct: 483 KHNSGVIHISSCNCGRTQGRREDPFNLRQANYDFYELIAQICNLCVKVKQYQFPIFEPSV 542
Query: 61 EDFR 64
D+R
Sbjct: 543 SDYR 546
>UNIPROTKB|B4KKN5 [details] [associations]
symbol:GI17817 "Protein SMG8" species:7230 "Drosophila
mojavensis" [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] GO:GO:0000184 EMBL:CH933807 OrthoDB:EOG4GHX42
InterPro:IPR019354 Pfam:PF10220 RefSeq:XP_002003257.1
EnsemblMetazoa:FBtr0168542 GeneID:6577290 KEGG:dmo:Dmoj_GI17817
FlyBase:FBgn0140558 InParanoid:B4KKN5 Uniprot:B4KKN5
Length = 967
Score = 204 (76.9 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 34/64 (53%), Positives = 50/64 (78%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+HSSG+ +SSC+CGRTQ +REDPF+LR+ANY++Y+ + V C CV ++ + FP+F PS
Sbjct: 482 KHSSGIVHISSCNCGRTQGRREDPFTLRQANYDYYEQLAVMCNLCVKVKKFQFPLFTPSI 541
Query: 61 EDFR 64
D+R
Sbjct: 542 SDYR 545
>UNIPROTKB|B4GH42 [details] [associations]
symbol:GL17013 "Protein SMG8" species:7234 "Drosophila
persimilis" [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] GO:GO:0000184 EMBL:CH479183 OrthoDB:EOG4GHX42
InterPro:IPR019354 Pfam:PF10220 RefSeq:XP_002017973.1
EnsemblMetazoa:FBtr0182628 GeneID:6592368 KEGG:dpe:Dper_GL17013
FlyBase:FBgn0154617 Uniprot:B4GH42
Length = 953
Score = 201 (75.8 bits), Expect = 7.5e-15, P = 7.5e-15
Identities = 33/64 (51%), Positives = 51/64 (79%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +SSC+CGRTQ +REDPFSLR+ANYEFY+++ C CV ++ + FP+F+P+
Sbjct: 489 KHNSGVIHVSSCNCGRTQGRREDPFSLRQANYEFYEHMVKMCNLCVKVKQFKFPIFEPTN 548
Query: 61 EDFR 64
++R
Sbjct: 549 NEYR 552
>UNIPROTKB|B5E0H4 [details] [associations]
symbol:GA24994 "Protein SMG8" species:46245 "Drosophila
pseudoobscura pseudoobscura" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] GO:GO:0000184 EMBL:CM000071
eggNOG:NOG253733 OrthoDB:EOG4GHX42 InterPro:IPR019354 Pfam:PF10220
RefSeq:XP_002138787.1 GeneID:6898813 KEGG:dpo:Dpse_GA24994
FlyBase:FBgn0246377 Uniprot:B5E0H4
Length = 953
Score = 201 (75.8 bits), Expect = 7.5e-15, P = 7.5e-15
Identities = 33/64 (51%), Positives = 51/64 (79%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+H+SG+ +SSC+CGRTQ +REDPFSLR+ANYEFY+++ C CV ++ + FP+F+P+
Sbjct: 489 KHNSGVIHVSSCNCGRTQGRREDPFSLRQANYEFYEHMVKMCNLCVKVKQFKFPIFEPTN 548
Query: 61 EDFR 64
++R
Sbjct: 549 NEYR 552
>UNIPROTKB|B4JE52 [details] [associations]
symbol:GH11308 "Protein SMG8" species:7222 "Drosophila
grimshawi" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] GO:GO:0000184 EMBL:CH916368 eggNOG:NOG253733
OrthoDB:EOG4GHX42 InterPro:IPR019354 Pfam:PF10220 OMA:LKNQPNF
RefSeq:XP_001988705.1 EnsemblMetazoa:FBtr0146722 GeneID:6562118
KEGG:dgr:Dgri_GH11308 FlyBase:FBgn0118788 InParanoid:B4JE52
Uniprot:B4JE52
Length = 945
Score = 198 (74.8 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 33/64 (51%), Positives = 50/64 (78%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+HSSG+ +SSC+CGRT +REDP++LR+ANY++Y+++ V C CV ++ + FPVF PS
Sbjct: 482 KHSSGVVHISSCNCGRTLGRREDPYTLRQANYDYYEHMAVMCNLCVKVKRFQFPVFTPSI 541
Query: 61 EDFR 64
D+R
Sbjct: 542 SDYR 545
>UNIPROTKB|B4LS82 [details] [associations]
symbol:GJ17645 "Protein SMG8" species:7244 "Drosophila
virilis" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] GO:GO:0000184 EMBL:CH940649 eggNOG:NOG253733
OrthoDB:EOG4GHX42 InterPro:IPR019354 Pfam:PF10220 OMA:LKNQPNF
RefSeq:XP_002052613.1 EnsemblMetazoa:FBtr0233570 GeneID:6629237
KEGG:dvi:Dvir_GJ17645 FlyBase:FBgn0204814 InParanoid:B4LS82
Uniprot:B4LS82
Length = 962
Score = 198 (74.8 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 33/64 (51%), Positives = 49/64 (76%)
Query: 2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
+HSSG+ +SSC+CGRTQ +REDPF+LR+ANY++Y+++ C CV ++ + PVF PS
Sbjct: 482 KHSSGIVHISSCNCGRTQGRREDPFTLRQANYDYYEHMAAMCNLCVKVKKFQLPVFTPSI 541
Query: 61 EDFR 64
D+R
Sbjct: 542 SDYR 545
>RGD|1306862 [details] [associations]
symbol:Smg8 "smg-8 homolog, nonsense mediated mRNA decay factor
(C. elegans)" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0045859 "regulation of protein kinase
activity" evidence=ISO] RGD:1306862 InterPro:IPR019354 Pfam:PF10220
IPI:IPI00557699 Ensembl:ENSRNOT00000051057 ArrayExpress:F1M4C8
Uniprot:F1M4C8
Length = 271
Score = 173 (66.0 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 3 HSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTED 62
H+S R +C+CGR QA R+DPF ++ ANY+FYQ + +C C L+H FPVF+PST D
Sbjct: 144 HNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKC-CGKLDHINFPVFEPSTPD 202
>UNIPROTKB|Q0VA04 [details] [associations]
symbol:smg8 "Protein smg8" species:8364 "Xenopus (Silurana)
tropicalis" [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISS] [GO:0045859
"regulation of protein kinase activity" evidence=ISS] GO:GO:0000184
GO:GO:0045859 eggNOG:NOG253733 HOGENOM:HOG000154346 OMA:HKFHLLP
InterPro:IPR019354 Pfam:PF10220 CTD:55181
GeneTree:ENSGT00390000018533 EMBL:BC121322 RefSeq:NP_001072291.1
UniGene:Str.55610 STRING:Q0VA04 Ensembl:ENSXETT00000002451
GeneID:779744 KEGG:xtr:779744 Xenbase:XB-GENE-965595 Bgee:Q0VA04
Uniprot:Q0VA04
Length = 915
Score = 180 (68.4 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 32/60 (53%), Positives = 42/60 (70%)
Query: 3 HSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTED 62
H+S R SC+CG+ QA REDPF ++ ANY+FYQ + +C C L+H FP+FQPST D
Sbjct: 522 HNSRARSTGSCNCGKKQAPREDPFDIKSANYDFYQILEEKC-CGKLDHITFPIFQPSTPD 580
>UNIPROTKB|Q8ND04 [details] [associations]
symbol:SMG8 "Protein SMG8" species:9606 "Homo sapiens"
[GO:0005575 "cellular_component" evidence=ND] [GO:0045859
"regulation of protein kinase activity" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0000184 "nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IMP;TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 GO:GO:0005829 GO:GO:0010467
GO:GO:0000184 EMBL:CH471109 GO:GO:0045859 EMBL:AC099850
eggNOG:NOG253733 HOGENOM:HOG000154346 OMA:HKFHLLP
InterPro:IPR019354 Pfam:PF10220 CTD:55181 EMBL:AF349467
EMBL:AK001449 EMBL:AK026858 EMBL:AL834490 EMBL:BC020957
EMBL:BC031604 IPI:IPI00328183 IPI:IPI00847523 IPI:IPI00867503
RefSeq:NP_060619.4 UniGene:Hs.7296 ProteinModelPortal:Q8ND04
IntAct:Q8ND04 STRING:Q8ND04 PhosphoSite:Q8ND04 DMDM:74715258
PaxDb:Q8ND04 PRIDE:Q8ND04 DNASU:55181 Ensembl:ENST00000300917
Ensembl:ENST00000543872 Ensembl:ENST00000578922 GeneID:55181
KEGG:hsa:55181 UCSC:uc002ixi.3 GeneCards:GC17P057288
H-InvDB:HIX0202411 HGNC:HGNC:25551 HPA:HPA024841 MIM:613175
neXtProt:NX_Q8ND04 PharmGKB:PA142672219 InParanoid:Q8ND04
OrthoDB:EOG4QVCBB PhylomeDB:Q8ND04 ChiTaRS:SMG8 GenomeRNAi:55181
NextBio:59007 ArrayExpress:Q8ND04 Bgee:Q8ND04 CleanEx:HS_C17orf71
Genevestigator:Q8ND04 Uniprot:Q8ND04
Length = 991
Score = 173 (66.0 bits), Expect = 7.8e-12, P = 7.8e-12
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 3 HSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTED 62
H+S R +C+CGR QA R+DPF ++ ANY+FYQ + +C C L+H FPVF+PST D
Sbjct: 601 HNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKC-CGKLDHINFPVFEPSTPD 659
>MGI|MGI:1921383 [details] [associations]
symbol:Smg8 "smg-8 homolog, nonsense mediated mRNA decay
factor (C. elegans)" species:10090 "Mus musculus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0045859
"regulation of protein kinase activity" evidence=ISO]
MGI:MGI:1921383 GO:GO:0000184 GO:GO:0045859 EMBL:AL713917
EMBL:CU407131 eggNOG:NOG253733 HOGENOM:HOG000154346 OMA:HKFHLLP
InterPro:IPR019354 Pfam:PF10220 CTD:55181
GeneTree:ENSGT00390000018533 OrthoDB:EOG4QVCBB EMBL:AK004714
EMBL:AK031106 EMBL:AK035089 EMBL:BC020005 IPI:IPI00165824
RefSeq:NP_077224.1 UniGene:Mm.23257 ProteinModelPortal:Q8VE18
STRING:Q8VE18 PhosphoSite:Q8VE18 PaxDb:Q8VE18 PRIDE:Q8VE18
Ensembl:ENSMUST00000020801 GeneID:74133 KEGG:mmu:74133
UCSC:uc007ktg.1 InParanoid:B2KGQ4 NextBio:339866 Bgee:Q8VE18
CleanEx:MM_1200011M11RIK Genevestigator:Q8VE18 Uniprot:Q8VE18
Length = 991
Score = 173 (66.0 bits), Expect = 7.8e-12, P = 7.8e-12
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 3 HSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTED 62
H+S R +C+CGR QA R+DPF ++ ANY+FYQ + +C C L+H FPVF+PST D
Sbjct: 601 HNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKC-CGKLDHINFPVFEPSTPD 659
>UNIPROTKB|A1A4J7 [details] [associations]
symbol:SMG8 "Protein SMG8" species:9913 "Bos taurus"
[GO:0045859 "regulation of protein kinase activity" evidence=ISS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] GO:GO:0000184 GO:GO:0045859
eggNOG:NOG253733 HOGENOM:HOG000154346 InterPro:IPR019354
Pfam:PF10220 EMBL:AAFC03009910 EMBL:BC126609 IPI:IPI00690306
IPI:IPI00906018 RefSeq:NP_001073755.1 UniGene:Bt.24297
STRING:A1A4J7 Ensembl:ENSBTAT00000052191 GeneID:522040
KEGG:bta:522040 CTD:55181 GeneTree:ENSGT00390000018533
NextBio:20873430 Uniprot:A1A4J7
Length = 999
Score = 173 (66.0 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 3 HSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTED 62
H+S R +C+CGR QA R+DPF ++ ANY+FYQ + +C C L+H FPVF+PST D
Sbjct: 609 HNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKC-CGKLDHINFPVFEPSTPD 667
>UNIPROTKB|A8WP66 [details] [associations]
symbol:smg-8 "Protein smg-8" species:6238 "Caenorhabditis
briggsae" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] GO:GO:0000184 EMBL:HE600951 eggNOG:NOG253733
InterPro:IPR019354 Pfam:PF10220 RefSeq:XP_002629747.1 STRING:A8WP66
EnsemblMetazoa:CBG00981 GeneID:8573218 KEGG:cbr:CBG00981
CTD:8573218 WormBase:CBG00981 HOGENOM:HOG000154347 OMA:LKNQPNF
Uniprot:A8WP66
Length = 871
Score = 133 (51.9 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 3 HSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTED 62
H + +S+C CG Q R++PF+L+EAN++FY++ C C L Y F ++Q TE+
Sbjct: 452 HDASNTLVSTCVCGNKQLVRQEPFTLKEANFDFYEHPDFNC-CKGLWRYQFQLYQEDTEE 510
>WB|WBGene00010551 [details] [associations]
symbol:smg-8 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] [GO:0055120 "striated muscle
dense body" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
GO:GO:0000184 GO:GO:0040011 EMBL:Z83232 eggNOG:NOG253733
InterPro:IPR019354 Pfam:PF10220 GeneTree:ENSGT00390000018533
HOGENOM:HOG000154347 OMA:LKNQPNF RefSeq:NP_497003.3 STRING:O62301
PaxDb:O62301 EnsemblMetazoa:K04B12.3 GeneID:175103
KEGG:cel:CELE_K04B12.3 UCSC:K04B12.3 CTD:175103 WormBase:K04B12.3
InParanoid:O62301 NextBio:886778 Uniprot:O62301
Length = 873
Score = 122 (48.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 3 HSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTED 62
H + +S+C CGR Q R +PFS++EAN +FY + +C C L Y F ++Q +E+
Sbjct: 456 HDASNTMISTCVCGRKQLIRPEPFSVKEANSDFYDHPDFKC-CRRLWRYQFQLYQEDSEE 514
>UNIPROTKB|O62301 [details] [associations]
symbol:smg-8 "Protein smg-8" species:6239 "Caenorhabditis
elegans" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0000184 "nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IMP]
GO:GO:0000184 GO:GO:0040011 EMBL:Z83232 eggNOG:NOG253733
InterPro:IPR019354 Pfam:PF10220 GeneTree:ENSGT00390000018533
HOGENOM:HOG000154347 OMA:LKNQPNF RefSeq:NP_497003.3 STRING:O62301
PaxDb:O62301 EnsemblMetazoa:K04B12.3 GeneID:175103
KEGG:cel:CELE_K04B12.3 UCSC:K04B12.3 CTD:175103 WormBase:K04B12.3
InParanoid:O62301 NextBio:886778 Uniprot:O62301
Length = 873
Score = 122 (48.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 3 HSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTED 62
H + +S+C CGR Q R +PFS++EAN +FY + +C C L Y F ++Q +E+
Sbjct: 456 HDASNTMISTCVCGRKQLIRPEPFSVKEANSDFYDHPDFKC-CRRLWRYQFQLYQEDSEE 514
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.138 0.453 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 66 66 0.00091 102 3 11 22 0.40 28
29 0.48 28
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 502 (53 KB)
Total size of DFA: 102 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 7.18u 0.18s 7.36t Elapsed: 00:00:00
Total cpu time: 7.18u 0.19s 7.37t Elapsed: 00:00:00
Start: Thu Aug 15 11:04:43 2013 End: Thu Aug 15 11:04:43 2013