RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14602
         (66 letters)



>gnl|CDD|220634 pfam10220, DUF2146, Uncharacterized conserved protein (DUF2146).
           This is a family of proteins conserved from plants to
           humans. In Dictyostelium it is annotated as Mss11p but
           this could not be confirmed. Mss11p is required for the
           activation of pseudo-hyphal and invasive growth by
           Ste12p in yeast.
          Length = 890

 Score = 94.2 bits (234), Expect = 1e-24
 Identities = 34/64 (53%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 1   MEHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPST 60
             H+SG+  +SSC+CGR Q  REDPF++++ANY+FYQ++  +C CV L  Y FP+FQPS+
Sbjct: 485 QAHNSGVIHVSSCNCGRKQGHREDPFTIKQANYDFYQHIAFKC-CVKLWRYQFPIFQPSS 543

Query: 61  EDFR 64
            D R
Sbjct: 544 SDIR 547


>gnl|CDD|129400 TIGR00299, TIGR00299, TIGR00299 family protein.  Members of this
           family are found in the Archaea and in several different
           bacteria lineages. The function in unknown and the
           genomic context is not well conserved [Hypothetical
           proteins, Conserved].
          Length = 382

 Score = 27.8 bits (62), Expect = 0.29
 Identities = 10/35 (28%), Positives = 13/35 (37%)

Query: 26  FSLREANYEFYQNVGVECGCVALEHYPFPVFQPST 60
             L   +  +Y  V V  G V   H   PV  P+ 
Sbjct: 138 DYLNLIDQCYYTPVPVGSGFVRAAHGLLPVPAPAV 172


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.138    0.453 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,188,381
Number of extensions: 212279
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 2
Length of query: 66
Length of database: 10,937,602
Length adjustment: 37
Effective length of query: 29
Effective length of database: 9,296,504
Effective search space: 269598616
Effective search space used: 269598616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.4 bits)