RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14602
         (66 letters)



>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 26.6 bits (58), Expect = 0.57
 Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 15/41 (36%)

Query: 8   RFMSSCDCGRTQAQREDP------FSLREANYEFYQNVGVE 42
           R +S  +     +  +         +     YE ++N+ +E
Sbjct: 146 RIVSGLE----LSDTKQKGKKFLVIA-----YEPFENIAIE 177


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 0.58
 Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 6/33 (18%)

Query: 34  EFYQNV--GVE----CGCVALEHYPFPVFQPST 60
            F+ +V   +      G    E YP     PS 
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323


>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG;
           DAH7P synthase, shikimate pathway, aromatic
           biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium
           tuberculosis} PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A*
           3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
          Length = 462

 Score = 25.1 bits (54), Expect = 1.8
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 4   SSGLRFMSSCDCGRTQAQREDPFSLREA---NYEF 35
             GLRFMS+C       Q  + ++  EA   +YE 
Sbjct: 222 DRGLRFMSACGVADRNLQTAEIYASHEALVLDYER 256


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.138    0.453 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,015,115
Number of extensions: 43568
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 5
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)