Query psy14604
Match_columns 209
No_of_seqs 241 out of 1455
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 15:58:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384|consensus 100.0 1.1E-28 2.3E-33 239.9 8.0 120 83-205 351-470 (1373)
2 KOG0385|consensus 99.9 5.1E-28 1.1E-32 227.1 10.6 106 92-199 157-262 (971)
3 KOG0389|consensus 99.9 2.3E-27 5.1E-32 223.2 10.1 104 93-198 389-492 (941)
4 KOG0387|consensus 99.9 2.4E-27 5.1E-32 223.3 7.6 95 96-190 197-291 (923)
5 PLN03142 Probable chromatin-re 99.9 1.7E-24 3.7E-29 213.4 11.6 102 94-198 162-263 (1033)
6 KOG0388|consensus 99.9 9E-25 1.9E-29 204.1 8.1 104 92-198 558-661 (1185)
7 KOG0391|consensus 99.9 8.7E-24 1.9E-28 204.6 7.6 97 101-197 612-708 (1958)
8 KOG0386|consensus 99.9 2.5E-23 5.5E-28 199.8 7.8 109 87-197 379-487 (1157)
9 KOG0392|consensus 99.9 2.6E-22 5.7E-27 195.5 6.8 101 98-198 969-1075(1549)
10 KOG1002|consensus 99.8 6.8E-20 1.5E-24 166.6 8.3 90 99-192 179-270 (791)
11 KOG0383|consensus 99.8 1.9E-21 4.1E-26 184.2 -1.8 124 86-209 277-400 (696)
12 KOG1015|consensus 99.8 2E-21 4.4E-26 185.8 -3.6 83 97-179 661-753 (1567)
13 PF00176 SNF2_N: SNF2 family N 99.8 5.1E-19 1.1E-23 151.6 10.7 82 108-189 1-95 (299)
14 KOG0390|consensus 99.8 1.5E-18 3.2E-23 166.1 8.6 91 101-191 235-337 (776)
15 KOG4439|consensus 99.7 2.9E-18 6.3E-23 160.7 7.9 92 99-190 320-421 (901)
16 COG0553 HepA Superfamily II DN 99.7 2.8E-17 6.2E-22 159.4 8.5 91 101-191 335-428 (866)
17 KOG1000|consensus 99.7 5.2E-17 1.1E-21 147.8 8.3 75 101-182 195-269 (689)
18 PRK04914 ATP-dependent helicas 99.6 3.4E-15 7.3E-20 147.3 10.0 85 100-188 148-232 (956)
19 KOG1016|consensus 99.5 3.2E-15 7E-20 141.6 0.4 78 101-179 251-337 (1387)
20 TIGR00603 rad25 DNA repair hel 99.4 4.2E-12 9.2E-17 122.3 11.0 83 102-191 253-338 (732)
21 KOG1001|consensus 99.1 1.9E-10 4E-15 110.4 7.0 81 107-187 135-224 (674)
22 PF04851 ResIII: Type III rest 99.1 9.2E-10 2E-14 87.3 9.2 74 103-182 2-79 (184)
23 PRK13766 Hef nuclease; Provisi 98.9 1.8E-08 3.9E-13 98.3 11.7 88 97-191 8-98 (773)
24 COG1061 SSL2 DNA or RNA helica 98.8 2.4E-08 5.1E-13 92.0 8.9 85 101-191 33-119 (442)
25 PHA02558 uvsW UvsW helicase; P 98.7 1.1E-07 2.4E-12 88.8 10.1 70 102-177 112-182 (501)
26 smart00487 DEXDc DEAD-like hel 98.7 2.8E-07 6E-12 72.7 11.1 82 103-189 7-93 (201)
27 cd00268 DEADc DEAD-box helicas 98.6 6.9E-07 1.5E-11 72.8 11.1 87 104-194 21-112 (203)
28 KOG0298|consensus 98.5 1.1E-07 2.3E-12 95.0 5.6 68 125-192 376-459 (1394)
29 PRK11448 hsdR type I restricti 98.3 1.7E-06 3.6E-11 87.8 8.6 75 102-177 411-487 (1123)
30 cd00046 DEXDc DEAD-like helica 98.3 4.1E-06 8.9E-11 62.1 8.5 68 125-193 2-71 (144)
31 KOG1123|consensus 98.2 6.6E-07 1.4E-11 82.7 3.0 82 102-192 300-386 (776)
32 PRK11776 ATP-dependent RNA hel 98.2 1.3E-05 2.8E-10 73.9 11.4 87 104-194 26-116 (460)
33 TIGR00348 hsdR type I site-spe 98.2 4.8E-06 1E-10 80.5 7.9 76 102-178 236-318 (667)
34 PRK11634 ATP-dependent RNA hel 98.2 1.7E-05 3.7E-10 76.3 11.2 86 103-192 27-116 (629)
35 TIGR00643 recG ATP-dependent D 98.1 1.7E-05 3.8E-10 76.1 10.1 90 99-191 230-324 (630)
36 PF00270 DEAD: DEAD/DEAH box h 98.0 5.9E-05 1.3E-09 59.1 10.0 79 107-190 2-83 (169)
37 COG4096 HsdR Type I site-speci 98.0 1.6E-05 3.4E-10 77.3 7.8 83 101-184 162-246 (875)
38 PTZ00424 helicase 45; Provisio 97.9 9.4E-05 2E-09 66.5 10.9 84 104-191 50-136 (401)
39 PRK01172 ski2-like helicase; P 97.9 7.3E-05 1.6E-09 72.2 10.4 82 102-190 20-103 (674)
40 PRK10590 ATP-dependent RNA hel 97.9 0.00011 2.4E-09 67.8 11.0 84 103-190 22-114 (456)
41 PRK10917 ATP-dependent DNA hel 97.9 6.9E-05 1.5E-09 72.7 9.9 89 100-191 257-350 (681)
42 PRK01297 ATP-dependent RNA hel 97.9 0.00012 2.7E-09 67.8 11.2 85 103-191 108-202 (475)
43 PRK04837 ATP-dependent RNA hel 97.9 0.00013 2.8E-09 66.6 11.0 85 104-192 30-124 (423)
44 PRK11192 ATP-dependent RNA hel 97.9 9.5E-05 2.1E-09 67.5 10.2 84 104-191 23-113 (434)
45 PRK05580 primosome assembly pr 97.8 0.00018 3.8E-09 69.9 11.7 84 103-191 143-227 (679)
46 PRK02362 ski2-like helicase; P 97.8 0.0001 2.3E-09 72.0 10.0 83 103-191 22-106 (737)
47 PTZ00110 helicase; Provisional 97.8 0.00023 4.9E-09 67.4 10.8 84 104-191 152-243 (545)
48 PLN00206 DEAD-box ATP-dependen 97.6 0.00044 9.6E-09 65.0 10.8 83 103-189 142-234 (518)
49 PRK04537 ATP-dependent RNA hel 97.6 0.00052 1.1E-08 65.4 11.2 85 103-191 30-124 (572)
50 PRK00254 ski2-like helicase; P 97.6 0.00043 9.2E-09 67.5 10.0 82 103-191 22-107 (720)
51 TIGR00580 mfd transcription-re 97.5 0.00073 1.6E-08 67.7 11.2 86 101-189 448-538 (926)
52 COG1111 MPH1 ERCC4-like helica 97.5 0.00041 9E-09 64.4 8.6 88 97-191 8-98 (542)
53 PRK13767 ATP-dependent helicas 97.5 0.00087 1.9E-08 66.9 10.5 85 104-192 32-137 (876)
54 TIGR03817 DECH_helic helicase/ 97.5 0.00095 2.1E-08 65.5 10.6 83 104-191 36-120 (742)
55 PRK09401 reverse gyrase; Revie 97.4 0.00082 1.8E-08 68.9 10.4 79 101-186 77-158 (1176)
56 COG1204 Superfamily II helicas 97.4 0.00064 1.4E-08 66.8 8.5 84 104-192 31-116 (766)
57 TIGR00614 recQ_fam ATP-depende 97.4 0.0014 3E-08 60.9 10.0 76 103-190 10-86 (470)
58 PRK10689 transcription-repair 97.3 0.0015 3.3E-08 66.8 10.7 85 101-188 597-686 (1147)
59 TIGR03714 secA2 accessory Sec 97.3 0.0015 3.2E-08 64.0 10.0 78 104-188 68-148 (762)
60 KOG0354|consensus 97.3 0.00085 1.8E-08 65.1 8.1 88 99-192 57-145 (746)
61 TIGR01054 rgy reverse gyrase. 97.2 0.0017 3.6E-08 66.7 9.4 83 101-190 75-163 (1171)
62 PRK11057 ATP-dependent DNA hel 97.1 0.0027 5.9E-08 60.9 9.8 74 104-189 25-99 (607)
63 TIGR01407 dinG_rel DnaQ family 97.1 0.0032 7E-08 62.6 10.6 87 101-190 242-334 (850)
64 COG0556 UvrB Helicase subunit 97.1 0.0022 4.9E-08 60.2 8.3 68 107-180 15-84 (663)
65 TIGR01389 recQ ATP-dependent D 97.1 0.0027 5.7E-08 60.6 9.1 75 104-190 13-88 (591)
66 COG1205 Distinct helicase fami 96.9 0.0051 1.1E-07 61.3 9.6 86 103-193 69-159 (851)
67 TIGR02621 cas3_GSU0051 CRISPR- 96.9 0.004 8.6E-08 61.7 8.4 91 102-196 13-130 (844)
68 PRK14701 reverse gyrase; Provi 96.8 0.0068 1.5E-07 64.1 10.2 85 101-192 76-165 (1638)
69 TIGR03158 cas3_cyano CRISPR-as 96.8 0.0067 1.5E-07 54.4 8.7 71 108-188 1-80 (357)
70 COG4889 Predicted helicase [Ge 96.7 0.0071 1.5E-07 60.0 8.5 82 102-188 159-242 (1518)
71 PRK12899 secA preprotein trans 96.7 0.012 2.7E-07 58.7 10.2 83 105-195 93-179 (970)
72 KOG0350|consensus 96.6 0.0077 1.7E-07 56.2 7.8 95 103-197 158-261 (620)
73 PF13086 AAA_11: AAA domain; P 96.6 0.0074 1.6E-07 49.1 6.7 67 105-175 2-75 (236)
74 PRK15483 type III restriction- 96.5 0.0094 2E-07 59.8 8.0 41 125-166 61-101 (986)
75 PRK09200 preprotein translocas 96.5 0.021 4.5E-07 56.5 10.3 80 101-190 75-158 (790)
76 TIGR01587 cas3_core CRISPR-ass 96.5 0.0098 2.1E-07 52.7 7.3 63 126-190 2-65 (358)
77 smart00489 DEXDc3 DEAD-like he 96.5 0.028 6.1E-07 49.1 10.0 74 103-176 7-84 (289)
78 smart00488 DEXDc2 DEAD-like he 96.5 0.028 6.1E-07 49.1 10.0 74 103-176 7-84 (289)
79 TIGR00631 uvrb excinuclease AB 96.5 0.021 4.6E-07 55.4 10.0 76 104-185 9-86 (655)
80 COG0513 SrmB Superfamily II DN 96.4 0.03 6.4E-07 52.8 10.7 90 104-197 51-146 (513)
81 COG1200 RecG RecG-like helicas 96.4 0.013 2.9E-07 56.4 7.8 90 100-192 258-352 (677)
82 KOG0330|consensus 96.3 0.026 5.6E-07 51.4 9.0 87 104-195 83-173 (476)
83 TIGR03117 cas_csf4 CRISPR-asso 96.2 0.029 6.2E-07 54.3 9.4 80 109-189 2-87 (636)
84 PRK09694 helicase Cas3; Provis 96.0 0.03 6.4E-07 56.1 8.7 84 102-190 284-372 (878)
85 TIGR00595 priA primosomal prot 96.0 0.021 4.6E-07 53.8 7.2 59 128-190 2-61 (505)
86 PRK12898 secA preprotein trans 96.0 0.056 1.2E-06 52.4 10.1 80 101-190 100-183 (656)
87 KOG0331|consensus 95.9 0.022 4.7E-07 53.7 6.8 90 104-197 113-211 (519)
88 PLN03137 ATP-dependent DNA hel 95.9 0.057 1.2E-06 55.2 10.1 74 103-188 459-533 (1195)
89 TIGR00963 secA preprotein tran 95.8 0.051 1.1E-06 53.3 9.0 79 102-190 54-136 (745)
90 PRK05298 excinuclease ABC subu 95.7 0.09 2E-06 51.0 10.5 78 102-185 10-89 (652)
91 KOG1802|consensus 95.7 0.053 1.1E-06 52.5 8.5 78 103-188 409-487 (935)
92 KOG0345|consensus 95.7 0.089 1.9E-06 49.0 9.7 91 104-198 28-127 (567)
93 TIGR00604 rad3 DNA repair heli 95.7 0.073 1.6E-06 52.0 9.8 71 104-175 10-82 (705)
94 TIGR00376 DNA helicase, putati 95.4 0.1 2.2E-06 50.6 9.4 90 103-200 156-246 (637)
95 PF12340 DUF3638: Protein of u 95.3 0.06 1.3E-06 45.7 6.6 74 101-177 20-93 (229)
96 COG1201 Lhr Lhr-like helicases 95.2 0.1 2.2E-06 51.8 9.0 86 103-192 21-114 (814)
97 KOG0335|consensus 95.0 0.051 1.1E-06 50.6 5.9 92 102-197 94-198 (482)
98 PRK13104 secA preprotein trans 94.9 0.13 2.8E-06 51.5 8.6 81 101-191 79-163 (896)
99 COG1199 DinG Rad3-related DNA 94.6 0.18 4E-06 48.5 8.9 73 102-176 13-86 (654)
100 PRK07246 bifunctional ATP-depe 94.5 0.31 6.7E-06 48.7 10.4 84 102-189 243-330 (820)
101 COG1197 Mfd Transcription-repa 94.5 0.18 3.9E-06 51.4 8.7 74 101-177 591-668 (1139)
102 PHA02653 RNA helicase NPH-II; 94.4 0.24 5.2E-06 48.4 9.2 89 103-191 159-265 (675)
103 COG1110 Reverse gyrase [DNA re 94.4 0.35 7.5E-06 49.0 10.2 80 101-188 79-164 (1187)
104 PRK12906 secA preprotein trans 94.4 0.35 7.6E-06 48.0 10.1 92 101-202 77-174 (796)
105 PRK12326 preprotein translocas 94.2 0.5 1.1E-05 46.5 10.7 92 101-202 75-172 (764)
106 PF13245 AAA_19: Part of AAA d 93.6 0.31 6.8E-06 34.0 6.2 45 123-168 10-56 (76)
107 KOG1131|consensus 93.1 0.35 7.6E-06 45.9 7.3 63 103-165 15-77 (755)
108 PF13872 AAA_34: P-loop contai 93.0 0.4 8.6E-06 42.4 7.2 73 103-176 36-114 (303)
109 PRK08074 bifunctional ATP-depe 92.9 0.75 1.6E-05 46.5 10.0 87 102-190 255-347 (928)
110 PRK12904 preprotein translocas 92.7 0.61 1.3E-05 46.5 8.8 82 101-192 78-163 (830)
111 PF07517 SecA_DEAD: SecA DEAD- 92.7 1.7 3.8E-05 37.7 10.7 91 101-201 74-170 (266)
112 KOG0338|consensus 92.6 0.29 6.2E-06 46.3 6.0 83 105-192 204-293 (691)
113 COG1203 CRISPR-associated heli 92.6 0.47 1E-05 46.8 7.9 89 103-191 194-286 (733)
114 COG4098 comFA Superfamily II D 92.2 1.1 2.4E-05 40.5 8.9 88 102-192 95-183 (441)
115 PRK13107 preprotein translocas 92.2 0.68 1.5E-05 46.5 8.4 82 101-192 79-164 (908)
116 KOG0952|consensus 92.1 0.41 8.9E-06 48.5 6.7 70 119-190 122-203 (1230)
117 PRK13103 secA preprotein trans 91.8 1.2 2.5E-05 44.9 9.5 91 101-201 79-175 (913)
118 COG1198 PriA Primosomal protei 91.1 1.7 3.6E-05 43.0 9.6 86 103-192 197-283 (730)
119 COG4581 Superfamily II RNA hel 90.9 0.84 1.8E-05 46.5 7.6 69 99-174 114-183 (1041)
120 PRK14873 primosome assembly pr 90.8 0.89 1.9E-05 44.4 7.5 62 132-196 169-231 (665)
121 PF00580 UvrD-helicase: UvrD/R 89.9 0.88 1.9E-05 38.7 6.0 55 105-165 1-56 (315)
122 KOG1803|consensus 89.4 0.78 1.7E-05 44.1 5.6 67 101-173 182-249 (649)
123 KOG0298|consensus 89.2 0.18 4E-06 51.7 1.4 26 124-149 306-331 (1394)
124 PF13604 AAA_30: AAA domain; P 88.8 2.3 4.9E-05 34.8 7.5 57 105-166 2-58 (196)
125 KOG0334|consensus 88.6 1.2 2.7E-05 44.9 6.7 85 104-192 387-480 (997)
126 KOG0342|consensus 88.5 1 2.2E-05 42.3 5.6 86 105-194 105-198 (543)
127 KOG0329|consensus 88.4 0.66 1.4E-05 40.5 4.1 60 128-190 84-150 (387)
128 PRK11747 dinG ATP-dependent DN 88.0 3.1 6.7E-05 40.9 9.0 86 102-189 23-119 (697)
129 PRK11054 helD DNA helicase IV; 87.3 2.5 5.5E-05 41.4 7.9 81 103-189 195-279 (684)
130 PF02562 PhoH: PhoH-like prote 87.1 1.6 3.5E-05 36.4 5.6 54 106-164 6-59 (205)
131 PRK10875 recD exonuclease V su 86.2 2.4 5.3E-05 41.0 7.1 58 105-166 153-211 (615)
132 cd01124 KaiC KaiC is a circadi 85.9 3.1 6.6E-05 32.8 6.5 47 127-176 3-49 (187)
133 KOG0348|consensus 85.1 4 8.6E-05 39.1 7.6 68 122-189 173-250 (708)
134 PRK10536 hypothetical protein; 85.0 3.2 6.9E-05 36.0 6.5 42 105-150 60-101 (262)
135 TIGR01447 recD exodeoxyribonuc 84.8 3 6.5E-05 40.2 6.9 56 107-166 148-205 (586)
136 CHL00122 secA preprotein trans 83.5 6.6 0.00014 39.5 8.8 79 101-189 73-155 (870)
137 PRK09751 putative ATP-dependen 83.5 3.6 7.9E-05 43.8 7.3 65 129-193 2-91 (1490)
138 KOG0340|consensus 83.4 5.1 0.00011 36.5 7.3 84 105-192 30-116 (442)
139 PRK07952 DNA replication prote 83.0 7.4 0.00016 33.2 8.0 44 107-150 79-126 (244)
140 PRK12902 secA preprotein trans 83.0 11 0.00024 38.2 10.0 78 101-188 82-163 (939)
141 COG3587 Restriction endonuclea 82.6 0.98 2.1E-05 45.0 2.7 38 126-164 77-114 (985)
142 KOG0333|consensus 82.5 3.3 7.1E-05 39.5 5.9 82 105-190 268-361 (673)
143 TIGR01448 recD_rel helicase, p 82.1 7.3 0.00016 38.4 8.5 66 102-172 321-386 (720)
144 COG1484 DnaC DNA replication p 82.0 7.5 0.00016 33.3 7.7 51 121-174 103-153 (254)
145 COG0514 RecQ Superfamily II DN 81.4 5.9 0.00013 38.2 7.3 73 104-188 17-90 (590)
146 PF09848 DUF2075: Uncharacteri 81.2 3.6 7.7E-05 36.7 5.6 45 126-171 4-48 (352)
147 PF01695 IstB_IS21: IstB-like 81.0 2.6 5.7E-05 34.0 4.3 31 121-151 45-75 (178)
148 cd00009 AAA The AAA+ (ATPases 80.2 13 0.00029 26.8 7.7 39 123-164 19-57 (151)
149 KOG1132|consensus 78.9 11 0.00023 38.0 8.3 81 102-182 19-139 (945)
150 PRK10919 ATP-dependent DNA hel 78.6 5.2 0.00011 39.0 6.2 68 104-177 2-71 (672)
151 KOG1133|consensus 78.4 5.3 0.00011 39.3 6.0 46 103-148 14-59 (821)
152 TIGR01970 DEAH_box_HrpB ATP-de 78.0 4.5 9.7E-05 40.6 5.6 54 118-174 12-66 (819)
153 COG0610 Type I site-specific r 77.7 8.8 0.00019 39.2 7.7 56 122-178 272-328 (962)
154 PRK04296 thymidine kinase; Pro 77.2 4.5 9.7E-05 32.8 4.6 34 126-162 5-38 (190)
155 PF07652 Flavi_DEAD: Flaviviru 76.8 9.1 0.0002 30.4 6.0 50 123-177 4-53 (148)
156 smart00382 AAA ATPases associa 76.6 3.6 7.8E-05 29.5 3.6 41 125-168 4-44 (148)
157 PF06745 KaiC: KaiC; InterPro 76.6 11 0.00023 31.1 6.8 49 126-177 22-71 (226)
158 COG3973 Superfamily I DNA and 75.9 5.8 0.00013 38.5 5.5 49 122-170 225-276 (747)
159 PRK12903 secA preprotein trans 75.9 20 0.00044 36.3 9.4 77 101-187 75-155 (925)
160 PRK08116 hypothetical protein; 75.1 15 0.00032 31.7 7.4 43 124-169 115-157 (268)
161 TIGR02640 gas_vesic_GvpN gas v 75.0 12 0.00026 31.9 6.9 48 108-161 6-53 (262)
162 KOG1807|consensus 74.8 9 0.00019 38.3 6.5 90 104-199 378-471 (1025)
163 PRK08181 transposase; Validate 74.4 12 0.00026 32.4 6.7 46 105-150 88-133 (269)
164 TIGR00150 HI0065_YjeE ATPase, 73.6 7.5 0.00016 30.2 4.7 41 117-157 16-56 (133)
165 COG0464 SpoVK ATPases of the A 73.0 8.1 0.00018 36.0 5.7 66 105-176 250-323 (494)
166 TIGR01074 rep ATP-dependent DN 72.9 11 0.00025 36.3 6.9 67 105-177 2-70 (664)
167 KOG4284|consensus 72.7 3.7 8E-05 40.2 3.3 85 107-195 50-138 (980)
168 KOG0353|consensus 72.5 4.7 0.0001 37.2 3.8 54 104-167 94-148 (695)
169 PRK08769 DNA polymerase III su 72.5 8.7 0.00019 34.2 5.5 48 103-150 3-53 (319)
170 PRK10646 ADP-binding protein; 70.7 11 0.00023 30.1 5.1 39 122-160 27-65 (153)
171 PRK05973 replicative DNA helic 70.0 19 0.00041 30.7 6.8 38 122-162 63-100 (237)
172 PRK06835 DNA replication prote 69.9 21 0.00046 31.8 7.4 47 105-151 161-211 (329)
173 KOG0328|consensus 69.7 3.5 7.5E-05 36.6 2.2 87 108-199 53-143 (400)
174 PRK08939 primosomal protein Dn 68.6 24 0.00051 31.1 7.4 40 112-151 143-184 (306)
175 PRK12377 putative replication 68.6 40 0.00086 28.8 8.6 41 124-167 102-142 (248)
176 PRK12901 secA preprotein trans 68.5 32 0.00068 35.6 8.9 85 104-197 169-259 (1112)
177 COG1202 Superfamily II helicas 68.1 14 0.0003 35.9 6.0 82 103-190 215-300 (830)
178 PF00448 SRP54: SRP54-type pro 67.9 11 0.00024 30.9 4.8 57 127-186 5-61 (196)
179 PF12846 AAA_10: AAA-like doma 67.7 30 0.00065 28.9 7.7 45 125-172 3-47 (304)
180 PRK00771 signal recognition pa 67.0 22 0.00047 33.1 7.1 25 126-150 98-122 (437)
181 TIGR03420 DnaA_homol_Hda DnaA 66.9 50 0.0011 26.7 8.6 24 125-148 40-63 (226)
182 PRK11664 ATP-dependent RNA hel 66.8 21 0.00046 35.8 7.4 55 118-175 15-70 (812)
183 TIGR02782 TrbB_P P-type conjug 66.2 19 0.00041 31.6 6.3 36 113-148 122-157 (299)
184 KOG0341|consensus 66.0 1.4 3E-05 40.6 -0.9 65 131-195 215-296 (610)
185 TIGR01075 uvrD DNA helicase II 65.9 20 0.00044 35.1 7.0 68 104-177 4-73 (715)
186 PRK06526 transposase; Provisio 65.7 9.7 0.00021 32.6 4.2 36 111-150 90-125 (254)
187 KOG0951|consensus 65.7 40 0.00086 35.8 9.0 65 125-189 327-402 (1674)
188 KOG1805|consensus 65.6 24 0.00052 36.1 7.3 98 103-206 668-805 (1100)
189 KOG0947|consensus 65.6 25 0.00055 36.1 7.4 86 95-189 288-374 (1248)
190 TIGR03880 KaiC_arch_3 KaiC dom 65.2 27 0.00058 28.6 6.7 48 126-176 19-66 (224)
191 PF01580 FtsK_SpoIIIE: FtsK/Sp 64.9 15 0.00032 29.7 5.1 40 123-162 38-77 (205)
192 PRK07993 DNA polymerase III su 64.7 11 0.00024 33.6 4.6 46 104-149 2-50 (334)
193 PRK05707 DNA polymerase III su 64.7 11 0.00025 33.5 4.6 46 104-149 3-48 (328)
194 TIGR03881 KaiC_arch_4 KaiC dom 64.4 29 0.00063 28.5 6.8 42 125-169 22-63 (229)
195 KOG0344|consensus 64.3 13 0.00027 35.8 5.0 96 78-177 128-233 (593)
196 PRK11331 5-methylcytosine-spec 62.6 34 0.00073 32.1 7.4 33 115-147 186-218 (459)
197 PRK13833 conjugal transfer pro 62.4 24 0.00052 31.5 6.2 41 105-148 129-169 (323)
198 KOG0343|consensus 62.3 17 0.00036 35.2 5.4 85 104-192 91-182 (758)
199 PF05876 Terminase_GpA: Phage 61.5 8.8 0.00019 36.7 3.5 68 101-172 13-81 (557)
200 TIGR03877 thermo_KaiC_1 KaiC d 61.4 34 0.00075 28.5 6.8 41 125-168 23-63 (237)
201 PRK11889 flhF flagellar biosyn 61.1 57 0.0012 30.4 8.5 77 127-208 245-331 (436)
202 PF05970 PIF1: PIF1-like helic 60.7 34 0.00073 30.7 6.9 60 105-167 2-63 (364)
203 PF05729 NACHT: NACHT domain 60.3 18 0.0004 27.3 4.6 27 126-152 3-29 (166)
204 PRK08533 flagellar accessory p 59.9 42 0.00092 28.0 7.1 39 122-163 23-61 (230)
205 PF13500 AAA_26: AAA domain; P 59.9 13 0.00027 30.0 3.7 26 126-151 4-29 (199)
206 PRK10416 signal recognition pa 59.9 35 0.00077 30.2 6.8 31 129-162 120-150 (318)
207 PF00437 T2SE: Type II/IV secr 59.7 20 0.00044 30.3 5.2 38 112-149 116-153 (270)
208 TIGR02768 TraA_Ti Ti-type conj 59.5 37 0.00081 33.7 7.6 59 102-166 350-408 (744)
209 cd03115 SRP The signal recogni 59.5 60 0.0013 25.3 7.5 25 126-150 3-27 (173)
210 PF13481 AAA_25: AAA domain; P 59.3 43 0.00092 26.4 6.7 56 122-177 31-93 (193)
211 PRK12402 replication factor C 59.3 23 0.0005 30.6 5.5 41 109-149 20-62 (337)
212 KOG0948|consensus 59.2 44 0.00096 33.6 7.7 66 103-175 128-194 (1041)
213 KOG0339|consensus 59.2 24 0.00051 33.9 5.7 37 154-190 295-335 (731)
214 COG0467 RAD55 RecA-superfamily 58.9 43 0.00093 28.2 7.0 38 125-165 25-62 (260)
215 cd01125 repA Hexameric Replica 58.5 20 0.00043 29.9 4.8 38 125-162 3-49 (239)
216 COG0132 BioD Dethiobiotin synt 58.2 12 0.00026 31.7 3.4 25 126-150 6-30 (223)
217 PRK13894 conjugal transfer ATP 58.1 32 0.00069 30.6 6.2 34 114-147 139-172 (319)
218 PRK06067 flagellar accessory p 57.9 43 0.00094 27.6 6.8 49 125-176 27-75 (234)
219 PRK12723 flagellar biosynthesi 57.6 62 0.0013 29.6 8.1 81 126-208 177-265 (388)
220 TIGR03015 pepcterm_ATPase puta 57.6 28 0.0006 29.1 5.6 43 104-146 23-66 (269)
221 COG1419 FlhF Flagellar GTP-bin 57.1 1.6E+02 0.0034 27.3 10.6 82 126-208 206-292 (407)
222 PF02367 UPF0079: Uncharacteri 56.7 15 0.00033 28.1 3.4 32 119-150 11-42 (123)
223 PRK06090 DNA polymerase III su 56.7 24 0.00053 31.4 5.3 47 103-149 2-51 (319)
224 PRK13235 nifH nitrogenase redu 56.7 14 0.0003 31.5 3.6 26 132-160 10-35 (274)
225 PRK08760 replicative DNA helic 56.1 48 0.001 31.1 7.3 51 122-174 228-278 (476)
226 PF13177 DNA_pol3_delta2: DNA 55.9 98 0.0021 24.3 10.5 80 109-189 2-112 (162)
227 TIGR02880 cbbX_cfxQ probable R 55.6 24 0.00052 30.6 4.9 26 125-150 60-85 (284)
228 KOG0336|consensus 55.6 12 0.00026 34.9 3.2 110 79-192 213-335 (629)
229 PRK06871 DNA polymerase III su 55.2 27 0.00058 31.2 5.3 45 105-149 3-50 (325)
230 PRK13230 nitrogenase reductase 55.1 15 0.00032 31.4 3.5 26 132-160 10-35 (279)
231 cd01129 PulE-GspE PulE/GspE Th 55.1 29 0.00063 29.7 5.4 41 105-148 64-105 (264)
232 PRK06921 hypothetical protein; 55.0 58 0.0012 28.0 7.2 28 123-150 117-144 (266)
233 PRK11773 uvrD DNA-dependent he 54.7 32 0.00069 33.9 6.2 68 104-177 9-78 (721)
234 TIGR01281 DPOR_bchL light-inde 54.7 15 0.00033 31.0 3.6 26 132-160 9-34 (268)
235 PRK06904 replicative DNA helic 54.3 65 0.0014 30.2 7.9 50 121-172 219-268 (472)
236 PF13401 AAA_22: AAA domain; P 54.3 23 0.0005 25.9 4.1 52 124-175 5-60 (131)
237 PRK04328 hypothetical protein; 53.7 53 0.0012 27.7 6.7 34 126-162 26-59 (249)
238 KOG0989|consensus 53.6 27 0.00058 31.4 4.9 43 107-149 39-83 (346)
239 PRK14974 cell division protein 53.1 61 0.0013 29.0 7.3 48 126-176 143-194 (336)
240 COG3265 GntK Gluconate kinase 52.5 60 0.0013 26.1 6.3 35 157-192 70-104 (161)
241 KOG0347|consensus 52.3 15 0.00033 35.4 3.4 65 127-191 222-303 (731)
242 PRK10037 cell division protein 52.1 18 0.0004 30.3 3.6 29 129-160 8-36 (250)
243 PRK12900 secA preprotein trans 51.8 62 0.0013 33.4 7.6 77 103-188 137-216 (1025)
244 PRK09112 DNA polymerase III su 51.7 27 0.00059 31.4 4.8 41 109-149 28-71 (351)
245 PRK12726 flagellar biosynthesi 51.5 87 0.0019 29.0 8.0 77 127-208 210-296 (407)
246 TIGR00064 ftsY signal recognit 50.9 92 0.002 26.8 7.8 33 127-162 76-108 (272)
247 PRK13185 chlL protochlorophyll 50.7 20 0.00043 30.3 3.6 27 131-160 10-36 (270)
248 TIGR02928 orc1/cdc6 family rep 50.7 95 0.0021 27.2 8.1 46 104-149 18-66 (365)
249 PRK09183 transposase/IS protei 50.6 55 0.0012 27.9 6.3 29 122-150 101-129 (259)
250 TIGR00347 bioD dethiobiotin sy 50.2 18 0.0004 28.1 3.1 25 127-151 2-26 (166)
251 PRK12374 putative dithiobiotin 50.1 21 0.00046 29.7 3.7 26 126-151 6-31 (231)
252 CHL00072 chlL photochlorophyll 49.9 20 0.00044 31.1 3.6 25 133-160 10-34 (290)
253 PF07726 AAA_3: ATPase family 49.8 12 0.00025 29.2 1.9 22 126-147 2-23 (131)
254 TIGR00379 cobB cobyrinic acid 49.7 18 0.0004 33.5 3.5 25 127-151 4-28 (449)
255 PRK00090 bioD dithiobiotin syn 49.6 20 0.00044 29.3 3.4 27 126-152 3-29 (222)
256 COG3421 Uncharacterized protei 49.6 16 0.00034 35.7 3.0 40 129-170 3-43 (812)
257 KOG1942|consensus 49.4 33 0.00072 30.9 4.8 47 121-174 62-108 (456)
258 COG0802 Predicted ATPase or ki 49.2 34 0.00073 27.2 4.4 40 122-161 24-63 (149)
259 PRK05748 replicative DNA helic 49.0 71 0.0015 29.4 7.2 44 123-168 203-246 (448)
260 PLN03025 replication factor C 48.7 35 0.00075 29.9 4.9 40 109-148 18-59 (319)
261 PF03796 DnaB_C: DnaB-like hel 48.6 55 0.0012 27.5 6.0 40 122-163 18-57 (259)
262 PRK06645 DNA polymerase III su 48.4 32 0.00069 32.7 4.9 41 108-148 25-68 (507)
263 cd00984 DnaB_C DnaB helicase C 48.2 43 0.00092 27.5 5.2 36 125-162 15-50 (242)
264 cd02032 Bchl_like This family 47.8 24 0.00051 29.8 3.6 26 132-160 9-34 (267)
265 KOG0337|consensus 47.7 25 0.00055 32.9 3.9 88 105-197 44-137 (529)
266 PRK08506 replicative DNA helic 47.6 72 0.0016 29.8 7.1 36 125-163 194-229 (472)
267 PRK14956 DNA polymerase III su 47.6 55 0.0012 30.9 6.3 42 108-149 22-66 (484)
268 TIGR03600 phage_DnaB phage rep 47.4 88 0.0019 28.5 7.5 38 123-162 194-231 (421)
269 TIGR01287 nifH nitrogenase iro 47.3 23 0.00051 30.0 3.6 26 132-160 9-34 (275)
270 PTZ00293 thymidine kinase; Pro 47.3 37 0.00079 28.5 4.6 33 127-162 8-40 (211)
271 cd02037 MRP-like MRP (Multiple 47.2 36 0.00079 26.5 4.4 31 127-160 4-34 (169)
272 TIGR03878 thermo_KaiC_2 KaiC d 47.1 37 0.0008 28.9 4.7 33 126-161 39-71 (259)
273 PRK14961 DNA polymerase III su 47.1 37 0.00081 30.4 5.0 41 108-148 20-63 (363)
274 PRK13900 type IV secretion sys 47.0 34 0.00074 30.5 4.7 35 113-147 150-184 (332)
275 cd02117 NifH_like This family 47.0 26 0.00055 28.6 3.6 27 131-160 8-34 (212)
276 PRK08058 DNA polymerase III su 46.9 93 0.002 27.5 7.4 42 108-149 10-54 (329)
277 KOG0346|consensus 46.6 50 0.0011 31.2 5.7 64 109-176 46-116 (569)
278 PHA02518 ParA-like protein; Pr 46.6 26 0.00057 28.0 3.6 39 131-172 9-49 (211)
279 PRK13236 nitrogenase reductase 46.6 25 0.00053 30.6 3.6 19 133-151 16-34 (296)
280 PRK14950 DNA polymerase III su 46.6 30 0.00066 33.2 4.5 41 108-148 20-63 (585)
281 PRK00784 cobyric acid synthase 46.5 21 0.00046 33.4 3.4 26 126-151 6-31 (488)
282 cd01122 GP4d_helicase GP4d_hel 46.3 79 0.0017 26.5 6.7 39 122-162 29-67 (271)
283 PF01656 CbiA: CobQ/CobB/MinD/ 46.2 47 0.001 25.9 5.0 32 127-161 3-34 (195)
284 TIGR00416 sms DNA repair prote 46.2 69 0.0015 29.9 6.7 48 126-176 97-144 (454)
285 cd01120 RecA-like_NTPases RecA 46.2 41 0.00089 25.0 4.5 33 127-162 3-35 (165)
286 PF13654 AAA_32: AAA domain; P 46.0 6.8 0.00015 37.2 0.0 70 112-181 19-101 (509)
287 TIGR02785 addA_Gpos recombinat 45.9 72 0.0016 33.6 7.4 58 106-169 3-60 (1232)
288 cd02040 NifH NifH gene encodes 45.9 26 0.00055 29.4 3.5 26 132-160 10-35 (270)
289 PRK13232 nifH nitrogenase redu 45.7 26 0.00057 29.7 3.6 26 132-160 10-35 (273)
290 PRK13531 regulatory ATPase Rav 45.6 38 0.00083 32.1 4.9 39 109-147 25-63 (498)
291 COG1192 Soj ATPases involved i 45.5 27 0.0006 29.2 3.7 21 128-148 8-28 (259)
292 COG1875 NYN ribonuclease and A 45.4 54 0.0012 30.3 5.6 53 108-162 232-284 (436)
293 PRK14722 flhF flagellar biosyn 45.4 1.5E+02 0.0032 27.0 8.6 39 125-164 139-177 (374)
294 PRK05595 replicative DNA helic 45.3 89 0.0019 28.8 7.3 43 125-169 203-245 (444)
295 COG1797 CobB Cobyrinic acid a, 45.1 25 0.00054 32.8 3.5 26 127-152 5-30 (451)
296 PF01935 DUF87: Domain of unkn 45.0 51 0.0011 27.0 5.2 39 122-163 23-61 (229)
297 KOG0092|consensus 45.0 57 0.0012 27.2 5.3 33 165-197 95-127 (200)
298 PRK01077 cobyrinic acid a,c-di 44.9 29 0.00064 32.1 4.0 27 126-152 7-33 (451)
299 PRK13889 conjugal transfer rel 44.8 85 0.0018 32.4 7.5 58 102-165 344-401 (988)
300 PRK10867 signal recognition pa 44.7 71 0.0015 29.7 6.5 44 126-171 103-150 (433)
301 KOG4280|consensus 44.7 13 0.00029 35.8 1.7 70 106-177 68-152 (574)
302 cd01983 Fer4_NifH The Fer4_Nif 44.6 61 0.0013 21.6 4.8 22 128-149 4-25 (99)
303 PRK13234 nifH nitrogenase redu 44.6 27 0.00059 30.3 3.6 28 130-160 11-38 (295)
304 PRK08903 DnaA regulatory inact 44.1 1.5E+02 0.0032 24.2 7.8 26 123-148 42-67 (227)
305 COG3267 ExeA Type II secretory 44.1 75 0.0016 27.7 6.1 61 111-175 38-105 (269)
306 PRK09165 replicative DNA helic 43.9 96 0.0021 29.2 7.3 48 125-172 219-278 (497)
307 PRK14948 DNA polymerase III su 43.8 39 0.00084 32.9 4.8 42 108-149 20-64 (620)
308 TIGR02881 spore_V_K stage V sp 43.7 42 0.00092 28.4 4.6 24 126-149 45-68 (261)
309 PRK08699 DNA polymerase III su 43.6 45 0.00098 29.6 4.9 44 105-148 2-46 (325)
310 PRK10818 cell division inhibit 43.3 30 0.00065 29.1 3.6 23 128-150 8-30 (270)
311 TIGR00764 lon_rel lon-related 43.2 42 0.00092 32.5 4.9 40 109-148 23-62 (608)
312 TIGR00959 ffh signal recogniti 42.9 69 0.0015 29.7 6.1 23 126-148 102-124 (428)
313 PRK14955 DNA polymerase III su 42.7 45 0.00097 30.3 4.8 41 109-149 21-64 (397)
314 PHA02542 41 41 helicase; Provi 42.7 75 0.0016 29.8 6.4 34 125-161 192-225 (473)
315 PRK06964 DNA polymerase III su 42.6 48 0.001 29.8 4.9 45 105-149 2-47 (342)
316 COG1066 Sms Predicted ATP-depe 42.0 1.3E+02 0.0029 28.1 7.7 68 126-197 96-166 (456)
317 TIGR03345 VI_ClpV1 type VI sec 41.7 96 0.0021 31.4 7.3 69 109-177 192-272 (852)
318 PRK03992 proteasome-activating 41.7 50 0.0011 29.9 5.0 42 123-170 165-206 (389)
319 KOG0738|consensus 41.3 51 0.0011 30.7 4.8 47 123-175 245-291 (491)
320 TIGR01073 pcrA ATP-dependent D 41.0 62 0.0013 31.8 5.8 67 104-176 4-72 (726)
321 PRK14957 DNA polymerase III su 40.5 49 0.0011 31.7 4.8 40 109-148 21-63 (546)
322 PRK14963 DNA polymerase III su 40.5 53 0.0012 31.1 5.1 41 109-149 19-62 (504)
323 cd01121 Sms Sms (bacterial rad 40.3 1E+02 0.0022 28.0 6.7 48 126-176 85-132 (372)
324 PRK08840 replicative DNA helic 40.2 1.2E+02 0.0027 28.3 7.4 45 122-168 216-260 (464)
325 PF02374 ArsA_ATPase: Anion-tr 40.1 38 0.00082 29.8 3.8 28 131-161 9-36 (305)
326 PRK13695 putative NTPase; Prov 39.9 1.8E+02 0.0039 22.6 9.4 71 122-198 95-167 (174)
327 COG0630 VirB11 Type IV secreto 39.8 48 0.001 29.3 4.4 36 113-148 133-168 (312)
328 PRK06749 replicative DNA helic 39.8 1.2E+02 0.0025 28.1 7.1 38 122-162 185-222 (428)
329 PRK13233 nifH nitrogenase redu 39.8 35 0.00075 28.9 3.5 26 132-160 11-37 (275)
330 PRK09302 circadian clock prote 39.7 1.1E+02 0.0024 28.6 7.1 46 127-175 277-322 (509)
331 TIGR02562 cas3_yersinia CRISPR 39.6 1.4E+02 0.003 31.2 8.0 91 105-195 409-505 (1110)
332 PHA02533 17 large terminase pr 39.4 1.1E+02 0.0023 29.3 7.0 56 103-163 58-113 (534)
333 PRK07471 DNA polymerase III su 39.4 62 0.0013 29.3 5.1 42 109-150 24-68 (365)
334 TIGR01242 26Sp45 26S proteasom 38.8 59 0.0013 29.0 4.9 44 123-172 156-199 (364)
335 PTZ00454 26S protease regulato 38.6 59 0.0013 29.8 4.9 44 123-172 179-222 (398)
336 PRK08006 replicative DNA helic 38.5 1.3E+02 0.0029 28.2 7.3 45 122-168 223-267 (471)
337 cd01130 VirB11-like_ATPase Typ 38.4 64 0.0014 25.7 4.7 36 107-145 12-47 (186)
338 KOG0920|consensus 38.2 78 0.0017 32.4 6.0 43 106-152 175-217 (924)
339 CHL00181 cbbX CbbX; Provisiona 37.9 68 0.0015 27.9 5.0 44 126-169 62-106 (287)
340 PF00006 ATP-synt_ab: ATP synt 37.9 81 0.0018 26.3 5.3 59 112-175 5-65 (215)
341 PRK13896 cobyrinic acid a,c-di 37.7 36 0.00077 31.7 3.4 26 126-151 5-30 (433)
342 KOG0326|consensus 37.1 26 0.00056 31.8 2.2 86 106-197 109-199 (459)
343 TIGR00313 cobQ cobyric acid sy 37.0 33 0.00071 32.1 3.1 26 126-151 2-27 (475)
344 PRK08084 DNA replication initi 36.9 2.3E+02 0.0051 23.5 8.0 39 110-148 30-70 (235)
345 TIGR00665 DnaB replicative DNA 36.8 1.7E+02 0.0036 26.7 7.6 37 125-163 197-233 (434)
346 TIGR01007 eps_fam capsular exo 36.6 64 0.0014 25.9 4.4 32 126-160 21-52 (204)
347 TIGR03499 FlhF flagellar biosy 36.6 2.1E+02 0.0045 24.6 7.9 25 126-150 197-221 (282)
348 PF00004 AAA: ATPase family as 36.6 44 0.00095 24.1 3.2 34 127-166 2-35 (132)
349 PF12775 AAA_7: P-loop contain 36.5 46 0.001 28.7 3.7 31 116-146 26-56 (272)
350 PF06564 YhjQ: YhjQ protein; 36.5 46 0.001 28.5 3.7 60 127-189 6-88 (243)
351 COG0305 DnaB Replicative DNA h 36.5 1.3E+02 0.0028 28.1 6.8 55 120-176 193-247 (435)
352 PRK07004 replicative DNA helic 36.5 1E+02 0.0022 28.8 6.2 38 123-162 213-250 (460)
353 TIGR01425 SRP54_euk signal rec 36.4 2.2E+02 0.0047 26.5 8.3 33 127-162 104-136 (429)
354 PRK10436 hypothetical protein; 36.2 76 0.0016 29.8 5.3 41 105-148 202-243 (462)
355 PF06068 TIP49: TIP49 C-termin 36.1 41 0.0009 30.9 3.4 51 109-163 32-86 (398)
356 cd02042 ParA ParA and ParB of 36.1 90 0.002 21.9 4.7 61 127-192 4-76 (104)
357 PF02702 KdpD: Osmosensitive K 35.9 52 0.0011 27.6 3.7 26 126-151 8-33 (211)
358 PRK05703 flhF flagellar biosyn 35.7 1.4E+02 0.0029 27.7 6.8 22 127-148 225-246 (424)
359 PRK06278 cobyrinic acid a,c-di 35.6 39 0.00084 31.9 3.3 23 127-149 243-265 (476)
360 PRK13705 plasmid-partitioning 35.5 43 0.00094 30.4 3.5 40 127-169 111-153 (388)
361 TIGR02655 circ_KaiC circadian 35.1 1.2E+02 0.0027 28.3 6.6 50 125-176 23-72 (484)
362 smart00255 TIR Toll - interleu 35.1 1.5E+02 0.0033 21.7 6.1 64 109-176 15-79 (140)
363 COG2804 PulE Type II secretory 35.1 80 0.0017 30.0 5.2 43 105-150 242-285 (500)
364 PRK13869 plasmid-partitioning 35.0 45 0.00098 30.5 3.6 31 127-160 126-156 (405)
365 PF13191 AAA_16: AAA ATPase do 34.8 63 0.0014 24.9 4.0 45 106-150 5-51 (185)
366 PRK13851 type IV secretion sys 34.7 52 0.0011 29.6 3.9 34 114-147 153-186 (344)
367 PF05496 RuvB_N: Holliday junc 34.6 75 0.0016 27.1 4.6 16 125-140 52-67 (233)
368 PRK06321 replicative DNA helic 34.6 1.7E+02 0.0037 27.4 7.4 49 122-172 225-273 (472)
369 COG0003 ArsA Predicted ATPase 34.5 48 0.001 29.6 3.5 25 133-160 12-36 (322)
370 TIGR02533 type_II_gspE general 34.4 73 0.0016 30.0 4.9 41 105-148 226-267 (486)
371 COG2453 CDC14 Predicted protei 34.3 89 0.0019 25.0 4.9 33 111-143 93-125 (180)
372 PHA02519 plasmid partition pro 34.2 48 0.001 30.2 3.6 31 127-160 111-141 (387)
373 cd01394 radB RadB. The archaea 34.1 89 0.0019 25.3 5.0 24 126-149 22-45 (218)
374 PRK09111 DNA polymerase III su 34.1 65 0.0014 31.3 4.6 41 109-149 29-72 (598)
375 PRK11823 DNA repair protein Ra 34.0 1.3E+02 0.0029 27.9 6.5 48 126-176 83-130 (446)
376 cd02036 MinD Bacterial cell di 33.8 83 0.0018 24.1 4.6 31 127-160 4-34 (179)
377 PRK07994 DNA polymerase III su 33.4 73 0.0016 31.3 4.8 41 109-149 21-64 (647)
378 PF10236 DAP3: Mitochondrial r 33.2 1.7E+02 0.0036 25.7 6.8 66 125-196 25-91 (309)
379 TIGR01968 minD_bact septum sit 33.0 75 0.0016 26.1 4.4 31 127-160 6-36 (261)
380 KOG1806|consensus 32.9 1.5E+02 0.0033 31.0 7.0 63 107-173 741-803 (1320)
381 PRK09302 circadian clock prote 32.9 1.5E+02 0.0033 27.7 6.9 50 125-176 33-82 (509)
382 TIGR02016 BchX chlorophyllide 32.9 54 0.0012 28.6 3.6 19 132-150 9-27 (296)
383 TIGR02655 circ_KaiC circadian 32.9 1.4E+02 0.0031 27.9 6.6 25 126-150 266-290 (484)
384 PRK10263 DNA translocase FtsK; 32.8 1.6E+02 0.0035 31.4 7.4 56 124-185 1011-1069(1355)
385 TIGR01969 minD_arch cell divis 32.7 80 0.0017 25.9 4.5 31 127-160 5-35 (251)
386 PRK14964 DNA polymerase III su 32.7 79 0.0017 29.9 4.9 39 109-147 18-59 (491)
387 COG0714 MoxR-like ATPases [Gen 32.3 85 0.0018 27.5 4.8 39 109-147 29-67 (329)
388 PRK14087 dnaA chromosomal repl 32.3 1.8E+02 0.004 27.0 7.2 25 125-149 143-167 (450)
389 PRK00411 cdc6 cell division co 32.2 1.3E+02 0.0028 26.7 6.0 45 106-150 35-82 (394)
390 PLN00020 ribulose bisphosphate 32.2 44 0.00094 30.9 2.9 42 125-172 150-191 (413)
391 PF07728 AAA_5: AAA domain (dy 32.0 88 0.0019 23.2 4.3 22 126-147 2-23 (139)
392 PF06309 Torsin: Torsin; Inte 31.9 1.8E+02 0.0038 22.5 5.9 50 128-177 58-113 (127)
393 PRK05636 replicative DNA helic 31.9 1.6E+02 0.0035 27.9 6.8 36 126-163 268-303 (505)
394 PRK07940 DNA polymerase III su 31.8 83 0.0018 28.8 4.7 41 109-149 10-62 (394)
395 PRK14962 DNA polymerase III su 31.7 84 0.0018 29.5 4.9 39 110-148 20-61 (472)
396 PRK11131 ATP-dependent RNA hel 31.7 2.1E+02 0.0046 30.6 8.1 51 121-175 87-144 (1294)
397 TIGR02639 ClpA ATP-dependent C 31.5 2.1E+02 0.0046 28.3 7.8 69 109-177 187-267 (731)
398 PF00158 Sigma54_activat: Sigm 31.5 2.6E+02 0.0057 22.1 8.0 50 117-169 16-65 (168)
399 PRK09361 radB DNA repair and r 31.3 1.1E+02 0.0024 24.9 5.1 25 126-150 26-50 (225)
400 PRK00149 dnaA chromosomal repl 31.2 1.8E+02 0.0038 26.8 6.9 26 125-150 150-175 (450)
401 COG1224 TIP49 DNA helicase TIP 31.1 76 0.0017 29.3 4.2 25 123-147 65-89 (450)
402 PF00931 NB-ARC: NB-ARC domain 31.1 1.4E+02 0.003 25.0 5.8 23 126-148 22-44 (287)
403 TIGR02773 addB_Gpos ATP-depend 30.9 1.6E+02 0.0034 30.8 7.1 52 126-178 5-56 (1158)
404 PF07724 AAA_2: AAA domain (Cd 30.9 98 0.0021 24.6 4.6 23 126-148 6-28 (171)
405 cd01363 Motor_domain Myosin an 30.9 38 0.00082 27.2 2.2 33 108-141 9-42 (186)
406 PF13614 AAA_31: AAA domain; P 30.8 1.2E+02 0.0027 22.7 5.0 33 126-161 4-36 (157)
407 KOG0651|consensus 30.7 50 0.0011 29.9 3.0 41 122-168 165-205 (388)
408 TIGR01243 CDC48 AAA family ATP 30.7 64 0.0014 31.8 4.1 44 123-172 487-530 (733)
409 TIGR03371 cellulose_yhjQ cellu 30.6 95 0.0021 25.4 4.6 30 128-160 7-36 (246)
410 TIGR02397 dnaX_nterm DNA polym 30.6 89 0.0019 27.2 4.7 40 109-148 19-61 (355)
411 PRK06305 DNA polymerase III su 30.6 88 0.0019 29.1 4.8 41 109-149 22-65 (451)
412 COG1474 CDC6 Cdc6-related prot 30.5 2.9E+02 0.0062 25.0 8.0 48 103-150 19-69 (366)
413 KOG0084|consensus 30.4 1.9E+02 0.0042 24.2 6.2 28 164-191 98-125 (205)
414 TIGR02525 plasmid_TraJ plasmid 30.4 1.4E+02 0.003 27.2 5.9 27 122-148 148-174 (372)
415 PRK08727 hypothetical protein; 30.2 2.2E+02 0.0047 23.7 6.7 25 126-150 44-68 (233)
416 TIGR02538 type_IV_pilB type IV 29.8 1.1E+02 0.0023 29.4 5.3 40 105-147 300-340 (564)
417 KOG0086|consensus 29.7 3.1E+02 0.0067 22.3 7.2 33 165-197 99-131 (214)
418 PRK14086 dnaA chromosomal repl 29.6 3E+02 0.0065 27.0 8.3 24 126-149 317-340 (617)
419 PRK14958 DNA polymerase III su 29.4 85 0.0018 29.7 4.5 40 109-148 21-63 (509)
420 PRK14960 DNA polymerase III su 29.1 91 0.002 30.9 4.7 40 109-148 20-62 (702)
421 PRK14954 DNA polymerase III su 29.0 91 0.002 30.4 4.7 41 109-149 21-64 (620)
422 PF11323 DUF3125: Protein of u 28.9 18 0.00039 23.3 -0.1 30 157-186 6-38 (50)
423 PF04665 Pox_A32: Poxvirus A32 28.6 1.2E+02 0.0025 26.0 4.8 37 123-162 13-49 (241)
424 PRK13768 GTPase; Provisional 28.6 1E+02 0.0022 26.1 4.5 24 127-150 6-29 (253)
425 PRK14723 flhF flagellar biosyn 28.5 1.4E+02 0.003 30.0 5.9 79 127-208 189-274 (767)
426 CHL00175 minD septum-site dete 28.5 98 0.0021 26.2 4.4 32 126-160 19-50 (281)
427 PRK05896 DNA polymerase III su 28.5 98 0.0021 30.2 4.8 40 109-148 21-63 (605)
428 KOG0731|consensus 28.5 93 0.002 31.2 4.7 23 122-144 343-365 (774)
429 PRK06731 flhF flagellar biosyn 28.4 3.9E+02 0.0084 23.1 8.1 48 125-175 77-128 (270)
430 PRK13231 nitrogenase reductase 28.1 37 0.0008 28.6 1.7 26 131-160 10-35 (264)
431 PRK07399 DNA polymerase III su 28.0 1.2E+02 0.0027 26.6 5.1 42 109-150 9-53 (314)
432 cd03109 DTBS Dethiobiotin synt 28.0 82 0.0018 23.8 3.5 24 127-150 3-26 (134)
433 cd02035 ArsA ArsA ATPase funct 27.9 1.2E+02 0.0025 24.9 4.6 31 127-160 3-33 (217)
434 PRK10917 ATP-dependent DNA hel 27.8 2.7E+02 0.0058 27.3 7.8 54 139-195 459-523 (681)
435 PRK13407 bchI magnesium chelat 27.8 1.2E+02 0.0026 27.1 5.0 39 109-147 13-53 (334)
436 TIGR00362 DnaA chromosomal rep 27.8 2.4E+02 0.0051 25.4 7.0 26 125-150 138-163 (405)
437 PF01745 IPT: Isopentenyl tran 27.7 98 0.0021 26.4 4.1 22 126-147 4-25 (233)
438 PF07555 NAGidase: beta-N-acet 27.5 1.1E+02 0.0025 27.0 4.7 67 125-191 108-193 (306)
439 TIGR02237 recomb_radB DNA repa 27.5 1.3E+02 0.0027 24.2 4.7 34 126-162 15-48 (209)
440 TIGR03453 partition_RepA plasm 27.5 1.2E+02 0.0025 27.4 4.9 40 127-169 109-150 (387)
441 PTZ00112 origin recognition co 27.4 1.9E+02 0.0041 30.2 6.6 46 103-148 757-806 (1164)
442 COG0210 UvrD Superfamily I DNA 27.3 1.7E+02 0.0037 28.2 6.3 80 104-189 2-88 (655)
443 PF00265 TK: Thymidine kinase; 27.3 1.2E+02 0.0025 24.5 4.4 33 127-162 5-37 (176)
444 TIGR00682 lpxK tetraacyldisacc 27.1 1.7E+02 0.0036 25.9 5.7 62 132-193 39-112 (311)
445 TIGR02524 dot_icm_DotB Dot/Icm 27.1 1.6E+02 0.0036 26.5 5.8 26 122-147 133-158 (358)
446 PTZ00361 26 proteosome regulat 26.8 1.5E+02 0.0033 27.6 5.6 42 123-170 217-258 (438)
447 PRK12323 DNA polymerase III su 26.7 1E+02 0.0022 30.6 4.5 41 109-149 21-64 (700)
448 PRK14952 DNA polymerase III su 26.6 1E+02 0.0022 29.9 4.5 40 109-148 18-60 (584)
449 COG3598 RepA RecA-family ATPas 26.2 87 0.0019 28.5 3.7 27 120-146 86-112 (402)
450 TIGR02788 VirB11 P-type DNA tr 26.2 1.1E+02 0.0024 26.7 4.4 33 113-145 134-166 (308)
451 smart00763 AAA_PrkA PrkA AAA d 26.0 2.6E+02 0.0056 25.5 6.8 45 105-149 56-104 (361)
452 COG2255 RuvB Holliday junction 26.0 76 0.0016 28.3 3.2 17 125-141 54-70 (332)
453 PRK14969 DNA polymerase III su 26.0 1.3E+02 0.0028 28.6 5.1 40 109-148 21-63 (527)
454 PF02606 LpxK: Tetraacyldisacc 25.9 1.7E+02 0.0036 26.1 5.5 57 133-192 47-118 (326)
455 PRK12608 transcription termina 25.9 1.4E+02 0.0031 27.3 5.1 41 109-150 120-160 (380)
456 COG0470 HolB ATPase involved i 25.8 3.5E+02 0.0076 22.8 7.5 26 125-150 26-51 (325)
457 TIGR01587 cas3_core CRISPR-ass 25.6 2.3E+02 0.0049 24.8 6.4 37 154-190 222-259 (358)
458 KOG0735|consensus 25.5 2.2E+02 0.0048 28.8 6.5 77 104-181 412-498 (952)
459 PRK07773 replicative DNA helic 25.3 1.4E+02 0.0031 30.2 5.5 38 123-162 217-254 (886)
460 CHL00195 ycf46 Ycf46; Provisio 25.3 85 0.0018 29.7 3.7 38 123-166 259-296 (489)
461 PRK12724 flagellar biosynthesi 25.2 3.3E+02 0.0072 25.4 7.5 21 127-147 227-247 (432)
462 KOG0991|consensus 25.1 1.5E+02 0.0033 25.9 4.9 28 122-149 47-74 (333)
463 KOG3349|consensus 25.1 1.7E+02 0.0037 23.6 4.8 63 126-199 83-145 (170)
464 PRK04195 replication factor C 24.9 1.5E+02 0.0032 27.6 5.3 24 123-146 39-62 (482)
465 COG0378 HypB Ni2+-binding GTPa 24.6 3E+02 0.0065 23.0 6.4 59 125-183 15-100 (202)
466 PHA00547 hypothetical protein 24.6 1.7E+02 0.0038 25.9 5.2 36 108-144 61-96 (337)
467 KOG3928|consensus 24.6 1.2E+02 0.0026 28.4 4.3 26 125-150 181-206 (461)
468 COG0553 HepA Superfamily II DN 24.6 52 0.0011 32.2 2.2 72 103-177 83-156 (866)
469 PRK14953 DNA polymerase III su 24.5 1.4E+02 0.0031 28.1 5.0 41 108-148 20-63 (486)
470 PRK07003 DNA polymerase III su 24.3 1.2E+02 0.0025 30.8 4.5 40 109-148 21-63 (830)
471 PRK08691 DNA polymerase III su 24.2 1.2E+02 0.0026 30.1 4.6 40 109-148 21-63 (709)
472 PRK14949 DNA polymerase III su 24.1 1.1E+02 0.0023 31.5 4.2 41 109-149 21-64 (944)
473 PRK05642 DNA replication initi 24.1 4.2E+02 0.009 22.0 8.1 24 125-148 47-70 (234)
474 TIGR03160 cobT_DBIPRT nicotina 24.1 1.5E+02 0.0033 26.6 4.9 39 112-150 142-180 (333)
475 COG0552 FtsY Signal recognitio 24.0 1.2E+02 0.0026 27.4 4.2 53 127-182 143-195 (340)
476 KOG0327|consensus 24.0 40 0.00086 30.9 1.2 80 108-191 52-134 (397)
477 PRK00440 rfc replication facto 24.0 1.6E+02 0.0034 25.1 4.9 41 109-149 22-64 (319)
478 cd02439 DMB-PRT_CobT Nicotinat 24.0 1.5E+02 0.0032 26.2 4.8 39 112-150 126-164 (315)
479 COG0653 SecA Preprotein transl 23.9 4.1E+02 0.0089 27.0 8.2 91 102-202 78-174 (822)
480 PRK01906 tetraacyldisaccharide 23.7 2.3E+02 0.0049 25.5 6.0 59 133-192 68-138 (338)
481 cd00550 ArsA_ATPase Oxyanion-t 23.6 1.3E+02 0.0028 25.5 4.2 25 127-151 4-28 (254)
482 PRK07133 DNA polymerase III su 23.5 1.3E+02 0.0028 30.0 4.7 41 109-149 23-66 (725)
483 CHL00095 clpC Clp protease ATP 23.5 3E+02 0.0065 27.6 7.4 54 124-177 201-264 (821)
484 TIGR03029 EpsG chain length de 23.4 1.4E+02 0.003 25.2 4.4 49 109-160 83-138 (274)
485 PRK13765 ATP-dependent proteas 23.3 1.3E+02 0.0029 29.4 4.7 39 109-147 36-74 (637)
486 PRK00105 cobT nicotinate-nucle 23.2 1.6E+02 0.0035 26.4 4.9 34 117-150 147-180 (335)
487 TIGR02012 tigrfam_recA protein 23.2 1.9E+02 0.0041 25.8 5.3 25 126-150 58-82 (321)
488 PRK13849 putative crown gall t 23.1 1.2E+02 0.0026 25.4 3.9 38 133-173 12-51 (231)
489 PRK06647 DNA polymerase III su 23.1 1.3E+02 0.0028 28.9 4.5 41 109-149 21-64 (563)
490 cd01131 PilT Pilus retraction 22.9 91 0.002 25.2 3.1 23 126-148 4-26 (198)
491 cd01918 HprK_C HprK/P, the bif 22.9 88 0.0019 24.7 2.8 24 123-146 14-37 (149)
492 PLN02974 adenosylmethionine-8- 22.8 1.3E+02 0.0027 30.5 4.5 34 126-162 31-64 (817)
493 PF02399 Herpes_ori_bp: Origin 22.8 1.2E+02 0.0025 30.7 4.2 48 127-176 53-101 (824)
494 PRK10865 protein disaggregatio 22.8 2.5E+02 0.0054 28.5 6.6 40 109-148 183-224 (857)
495 cd02038 FleN-like FleN is a me 22.8 1.8E+02 0.0038 21.9 4.5 23 127-149 4-26 (139)
496 cd03110 Fer4_NifH_child This p 22.7 1.2E+02 0.0027 23.5 3.7 21 127-147 4-24 (179)
497 PF08674 AChE_tetra: Acetylcho 22.6 61 0.0013 19.5 1.4 11 167-177 5-15 (37)
498 PRK07667 uridine kinase; Provi 22.6 2.9E+02 0.0063 22.1 6.0 23 127-149 21-43 (193)
499 TIGR03018 pepcterm_TyrKin exop 22.5 1.6E+02 0.0035 23.8 4.5 24 126-149 39-62 (207)
500 TIGR00635 ruvB Holliday juncti 22.5 1.6E+02 0.0034 25.2 4.6 39 109-147 9-54 (305)
No 1
>KOG0384|consensus
Probab=99.95 E-value=1.1e-28 Score=239.88 Aligned_cols=120 Identities=51% Similarity=0.877 Sum_probs=112.9
Q ss_pred CChhhhhhhccCCCCccccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 83 PTTDLRKKYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 83 ~~~~~~~~~~~~p~~~~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
+.-....+++.+|.|+.+ ..||+||++|+|||..+|+++..||||||||||||||+|+||..++...+..+|+|||+|
T Consensus 351 ~~rp~~~Kle~qp~~~~g--~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvp 428 (1373)
T KOG0384|consen 351 PQRPRFRKLEKQPEYKGG--NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVP 428 (1373)
T ss_pred ccchhHHHhhcCcccccc--chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEee
Confidence 334455678899999976 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhCCCceEEEEEcChhHHHHHhhhceeccCc
Q psy14604 163 LSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDT 205 (209)
Q Consensus 163 ~sl~~qW~~E~~~~~~~l~v~~y~G~~~~r~~i~~~~~~~~~~ 205 (209)
+|++.+|++||.+|+ ++++++|+|+..+|..|++|+|.+..+
T Consensus 429 lst~~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~ 470 (1373)
T KOG0384|consen 429 LSTITAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSN 470 (1373)
T ss_pred hhhhHHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCC
Confidence 999999999999999 999999999999999999999998874
No 2
>KOG0385|consensus
Probab=99.95 E-value=5.1e-28 Score=227.11 Aligned_cols=106 Identities=49% Similarity=0.791 Sum_probs=97.3
Q ss_pred ccCCCCccccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHH
Q psy14604 92 EKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWER 171 (209)
Q Consensus 92 ~~~p~~~~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~ 171 (209)
..+|.++. +..|++||++|++||+.+|.++.+|||||+||||||+|+||||.++.......+|+||+||.|++.||.+
T Consensus 157 ~~sP~~v~--~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~ 234 (971)
T KOG0385|consen 157 EDSPSYVK--GGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMN 234 (971)
T ss_pred cCCchhhc--CCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHH
Confidence 34666653 4889999999999999999999999999999999999999999999887778899999999999999999
Q ss_pred HHHHhCCCceEEEEEcChhHHHHHhhhc
Q psy14604 172 EFETWAPDFYVVTYVGDKDCRIVLRDHD 199 (209)
Q Consensus 172 E~~~~~~~l~v~~y~G~~~~r~~i~~~~ 199 (209)
||.+|+|++++++|+|++..|..+++..
T Consensus 235 Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~ 262 (971)
T KOG0385|consen 235 EFKRFTPSLNVVVYHGDKEERAALRRDI 262 (971)
T ss_pred HHHHhCCCcceEEEeCCHHHHHHHHHHh
Confidence 9999999999999999999998887643
No 3
>KOG0389|consensus
Probab=99.94 E-value=2.3e-27 Score=223.15 Aligned_cols=104 Identities=50% Similarity=0.866 Sum_probs=95.9
Q ss_pred cCCCCccccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 93 KQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 93 ~~p~~~~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
++|..+. .+++|++||+.|||||.-++...-.||||||||||||+|+|||++.|+..+. .+|.|||||.|++.||.+|
T Consensus 389 ~qp~~l~-s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-~gpHLVVvPsSTleNWlrE 466 (941)
T KOG0389|consen 389 EQPKLLS-SGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-PGPHLVVVPSSTLENWLRE 466 (941)
T ss_pred cCccccC-CCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-CCCcEEEecchhHHHHHHH
Confidence 3565543 5688999999999999999999999999999999999999999999998887 7899999999999999999
Q ss_pred HHHhCCCceEEEEEcChhHHHHHhhh
Q psy14604 173 FETWAPDFYVVTYVGDKDCRIVLRDH 198 (209)
Q Consensus 173 ~~~~~~~l~v~~y~G~~~~r~~i~~~ 198 (209)
|.+|||.|.|-.|+|+..+|..+|..
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~ 492 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRER 492 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHH
Confidence 99999999999999999999998874
No 4
>KOG0387|consensus
Probab=99.94 E-value=2.4e-27 Score=223.29 Aligned_cols=95 Identities=40% Similarity=0.652 Sum_probs=89.2
Q ss_pred CCccccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHH
Q psy14604 96 PFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFET 175 (209)
Q Consensus 96 ~~~~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~ 175 (209)
.++..+...|++||++||+||+.+++++.|||||||||||||+|+|+||.+++..+...+|+|||||.+++.||.+||.+
T Consensus 197 ~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~ 276 (923)
T KOG0387|consen 197 KVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQT 276 (923)
T ss_pred cccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHH
Confidence 34555667899999999999999999999999999999999999999999999987777999999999999999999999
Q ss_pred hCCCceEEEEEcChh
Q psy14604 176 WAPDFYVVTYVGDKD 190 (209)
Q Consensus 176 ~~~~l~v~~y~G~~~ 190 (209)
|+|.+.|.+|||+.+
T Consensus 277 w~p~~rv~ilh~t~s 291 (923)
T KOG0387|consen 277 WWPPFRVFILHGTGS 291 (923)
T ss_pred hCcceEEEEEecCCc
Confidence 999999999999987
No 5
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.91 E-value=1.7e-24 Score=213.40 Aligned_cols=102 Identities=40% Similarity=0.670 Sum_probs=92.1
Q ss_pred CCCCccccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHH
Q psy14604 94 QPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREF 173 (209)
Q Consensus 94 ~p~~~~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~ 173 (209)
+|.++. ..|+|||++||+||..++..+.+|||||+||||||+|+|++|..+.......+|+|||||.+++.||.+||
T Consensus 162 qP~~i~---~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei 238 (1033)
T PLN03142 162 QPSCIK---GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEI 238 (1033)
T ss_pred CChHhc---cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHH
Confidence 454443 68999999999999999999999999999999999999999998877666778999999999999999999
Q ss_pred HHhCCCceEEEEEcChhHHHHHhhh
Q psy14604 174 ETWAPDFYVVTYVGDKDCRIVLRDH 198 (209)
Q Consensus 174 ~~~~~~l~v~~y~G~~~~r~~i~~~ 198 (209)
.+|+|.+++++|+|+...|..++.+
T Consensus 239 ~kw~p~l~v~~~~G~~~eR~~~~~~ 263 (1033)
T PLN03142 239 RRFCPVLRAVKFHGNPEERAHQREE 263 (1033)
T ss_pred HHHCCCCceEEEeCCHHHHHHHHHH
Confidence 9999999999999999988776554
No 6
>KOG0388|consensus
Probab=99.91 E-value=9e-25 Score=204.14 Aligned_cols=104 Identities=45% Similarity=0.756 Sum_probs=97.2
Q ss_pred ccCCCCccccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHH
Q psy14604 92 EKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWER 171 (209)
Q Consensus 92 ~~~p~~~~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~ 171 (209)
-.+|.++ .-.|+.||+.|++||.+++.++-.||||||||||||+|+|++|+.+.......+|+|||+|.|++.||.+
T Consensus 558 V~qPkil---~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaq 634 (1185)
T KOG0388|consen 558 VPQPKIL---KCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQ 634 (1185)
T ss_pred ccCchhh---hhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHH
Confidence 4456554 4689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCceEEEEEcChhHHHHHhhh
Q psy14604 172 EFETWAPDFYVVTYVGDKDCRIVLRDH 198 (209)
Q Consensus 172 E~~~~~~~l~v~~y~G~~~~r~~i~~~ 198 (209)
||.+|+|.|+|+.|.|+..+|..++.+
T Consensus 635 EisrFlP~~k~lpywGs~~eRkiLrKf 661 (1185)
T KOG0388|consen 635 EISRFLPSFKVLPYWGSPSERKILRKF 661 (1185)
T ss_pred HHHHhCccceeecCcCChhhhHHHHHh
Confidence 999999999999999999999988773
No 7
>KOG0391|consensus
Probab=99.89 E-value=8.7e-24 Score=204.63 Aligned_cols=97 Identities=44% Similarity=0.729 Sum_probs=91.2
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhCCCc
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDF 180 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~~l 180 (209)
+..+||.||..|++||..++.++..||||||||||||||+|+|++.+.-+...++|.|||||.+++.||+-||++|||.|
T Consensus 612 LrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcPgl 691 (1958)
T KOG0391|consen 612 LRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCPGL 691 (1958)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCCcc
Confidence 56789999999999999999999999999999999999999999998877778899999999999999999999999999
Q ss_pred eEEEEEcChhHHHHHhh
Q psy14604 181 YVVTYVGDKDCRIVLRD 197 (209)
Q Consensus 181 ~v~~y~G~~~~r~~i~~ 197 (209)
++.+|+|+.++|..=|+
T Consensus 692 KILTYyGs~kErkeKRq 708 (1958)
T KOG0391|consen 692 KILTYYGSHKERKEKRQ 708 (1958)
T ss_pred eEeeecCCHHHHHHHhh
Confidence 99999999999976544
No 8
>KOG0386|consensus
Probab=99.88 E-value=2.5e-23 Score=199.77 Aligned_cols=109 Identities=43% Similarity=0.811 Sum_probs=100.0
Q ss_pred hhhhhccCCCCccccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH
Q psy14604 87 LRKKYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI 166 (209)
Q Consensus 87 ~~~~~~~~p~~~~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~ 166 (209)
+......+|..+ .+..|++||+.|+.||..++.++..||||||||||||+|+|++|++++......+|+|||||++++
T Consensus 379 I~E~v~~Qps~l--~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL 456 (1157)
T KOG0386|consen 379 IKENVAKQPSSL--QGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTL 456 (1157)
T ss_pred hhhccccCcchh--cCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEecccccc
Confidence 334456677776 458999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHhCCCceEEEEEcChhHHHHHhh
Q psy14604 167 INWEREFETWAPDFYVVTYVGDKDCRIVLRD 197 (209)
Q Consensus 167 ~qW~~E~~~~~~~l~v~~y~G~~~~r~~i~~ 197 (209)
.||..||.+|+|++..++|.|++..|..+..
T Consensus 457 ~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~ 487 (1157)
T KOG0386|consen 457 VNWSSEFPKWAPSVQKIQYKGTPQQRSGLTK 487 (1157)
T ss_pred CCchhhccccccceeeeeeeCCHHHHhhHHH
Confidence 9999999999999999999999999977654
No 9
>KOG0392|consensus
Probab=99.86 E-value=2.6e-22 Score=195.48 Aligned_cols=101 Identities=36% Similarity=0.541 Sum_probs=89.7
Q ss_pred ccccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCC------CCCcEEEEeCcccHHHHHH
Q psy14604 98 LDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH------CKGPFLVSAPLSTIINWER 171 (209)
Q Consensus 98 ~~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~------~~~~~LIV~P~sl~~qW~~ 171 (209)
+..+...||.||++||+||..+...+-.||||||||||||+|+|++++.-..... ...|.|||||.+|..+|+.
T Consensus 969 p~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~ 1048 (1549)
T KOG0392|consen 969 PVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKS 1048 (1549)
T ss_pred ccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHH
Confidence 3446788999999999999999999999999999999999999999987655442 1238999999999999999
Q ss_pred HHHHhCCCceEEEEEcChhHHHHHhhh
Q psy14604 172 EFETWAPDFYVVTYVGDKDCRIVLRDH 198 (209)
Q Consensus 172 E~~~~~~~l~v~~y~G~~~~r~~i~~~ 198 (209)
|+.+|+|-++|..|+|.+.+|..+|.+
T Consensus 1049 E~~kf~pfL~v~~yvg~p~~r~~lR~q 1075 (1549)
T KOG0392|consen 1049 EVKKFFPFLKVLQYVGPPAERRELRDQ 1075 (1549)
T ss_pred HHHHhcchhhhhhhcCChHHHHHHHhh
Confidence 999999999999999999999888764
No 10
>KOG1002|consensus
Probab=99.80 E-value=6.8e-20 Score=166.57 Aligned_cols=90 Identities=39% Similarity=0.591 Sum_probs=77.7
Q ss_pred cccCCCCchHHHHHHHHHHHhhc-CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhC
Q psy14604 99 DDTGMQLHAYQLEGINWLRYSWG-QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWA 177 (209)
Q Consensus 99 ~~~~~~L~~~Q~~gv~~l~~~~~-~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~ 177 (209)
.++-+.|.|||.+|+.|+..... ...|||||||||+|||+|+||++++- ....|+|||||...+.||.+||.+++
T Consensus 179 ~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae----~~ra~tLVvaP~VAlmQW~nEI~~~T 254 (791)
T KOG1002|consen 179 DDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAE----VDRAPTLVVAPTVALMQWKNEIERHT 254 (791)
T ss_pred ccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhc----cccCCeeEEccHHHHHHHHHHHHHhc
Confidence 34668899999999999975544 45589999999999999999998873 34568999999999999999999998
Q ss_pred -CCceEEEEEcChhHH
Q psy14604 178 -PDFYVVTYVGDKDCR 192 (209)
Q Consensus 178 -~~l~v~~y~G~~~~r 192 (209)
..++|++|||..+..
T Consensus 255 ~gslkv~~YhG~~R~~ 270 (791)
T KOG1002|consen 255 SGSLKVYIYHGAKRDK 270 (791)
T ss_pred cCceEEEEEecccccC
Confidence 689999999998655
No 11
>KOG0383|consensus
Probab=99.80 E-value=1.9e-21 Score=184.23 Aligned_cols=124 Identities=60% Similarity=1.046 Sum_probs=117.6
Q ss_pred hhhhhhccCCCCccccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc
Q psy14604 86 DLRKKYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST 165 (209)
Q Consensus 86 ~~~~~~~~~p~~~~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl 165 (209)
+....++.+|.++.+.+..|++||.+|++|+...|..+..+||||+||||||+++++|++.++......+|.||++|.+.
T Consensus 277 ~~~v~~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT 356 (696)
T KOG0383|consen 277 DDPVPYEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLST 356 (696)
T ss_pred CCCCCcccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCcc
Confidence 34556788999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCceEEEEEcChhHHHHHhhhceeccCcCCCC
Q psy14604 166 IINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRG 209 (209)
Q Consensus 166 ~~qW~~E~~~~~~~l~v~~y~G~~~~r~~i~~~~~~~~~~~~r~ 209 (209)
+.||+.|+..|+|+++|++|+|+.+.|..|++++|+++|+++|+
T Consensus 357 ~~nwe~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~ 400 (696)
T KOG0383|consen 357 IVNWEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKS 400 (696)
T ss_pred ccCCCCchhccCCCcccccCCCCccchhhhhccccccccccccc
Confidence 99999999999999999999999999999999999999998764
No 12
>KOG1015|consensus
Probab=99.79 E-value=2e-21 Score=185.78 Aligned_cols=83 Identities=33% Similarity=0.523 Sum_probs=70.6
Q ss_pred CccccCCCCchHHHHHHHHHHHhhc---------CCCceEEEcCCCCchHHHHHHHHHHHHhhCC-CCCcEEEEeCcccH
Q psy14604 97 FLDDTGMQLHAYQLEGINWLRYSWG---------QNIDTILADEMGLGKTIQTITFLYSLFKEGH-CKGPFLVSAPLSTI 166 (209)
Q Consensus 97 ~~~~~~~~L~~~Q~~gv~~l~~~~~---------~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~-~~~~~LIV~P~sl~ 166 (209)
+..++...|+|||..||.||+.+.+ .+.|||||++||||||+|+|+|++.++.... ....+|||||..++
T Consensus 661 V~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~ 740 (1567)
T KOG1015|consen 661 VHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTA 740 (1567)
T ss_pred ccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHH
Confidence 3344667899999999999987754 4568999999999999999999999876543 34579999999999
Q ss_pred HHHHHHHHHhCCC
Q psy14604 167 INWEREFETWAPD 179 (209)
Q Consensus 167 ~qW~~E~~~~~~~ 179 (209)
.||.+||++|.++
T Consensus 741 ~NW~~EFekWm~~ 753 (1567)
T KOG1015|consen 741 LNWMNEFEKWMEG 753 (1567)
T ss_pred HHHHHHHHHhccc
Confidence 9999999999874
No 13
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.79 E-value=5.1e-19 Score=151.60 Aligned_cols=82 Identities=37% Similarity=0.595 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhh---------cCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCC--CcEEEEeCcccHHHHHHHHHHh
Q psy14604 108 YQLEGINWLRYSW---------GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCK--GPFLVSAPLSTIINWEREFETW 176 (209)
Q Consensus 108 ~Q~~gv~~l~~~~---------~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~--~~~LIV~P~sl~~qW~~E~~~~ 176 (209)
||++||+||...+ ....||||||+||+|||+++++++..+....... .++|||||.+++.||..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7888999999999999999999998877665433 2699999999999999999999
Q ss_pred C-C-CceEEEEEcCh
Q psy14604 177 A-P-DFYVVTYVGDK 189 (209)
Q Consensus 177 ~-~-~l~v~~y~G~~ 189 (209)
+ | ++++++|.|..
T Consensus 81 ~~~~~~~v~~~~~~~ 95 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDS 95 (299)
T ss_dssp SGT-TS-EEEESSSC
T ss_pred ccccccccccccccc
Confidence 9 4 79999999988
No 14
>KOG0390|consensus
Probab=99.76 E-value=1.5e-18 Score=166.13 Aligned_cols=91 Identities=32% Similarity=0.501 Sum_probs=79.6
Q ss_pred cCCCCchHHHHHHHHHHHhhc------CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCC----cEEEEeCcccHHHHH
Q psy14604 101 TGMQLHAYQLEGINWLRYSWG------QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKG----PFLVSAPLSTIINWE 170 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~------~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~----~~LIV~P~sl~~qW~ 170 (209)
+...|||||++|++||+.++. ..+|||+||+||+|||+|.|+||++++...+.++ ..|||||.+|+.||+
T Consensus 235 l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWk 314 (776)
T KOG0390|consen 235 LKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWK 314 (776)
T ss_pred HhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHH
Confidence 557799999999999988764 3468999999999999999999999998876622 359999999999999
Q ss_pred HHHHHhCC--CceEEEEEcChhH
Q psy14604 171 REFETWAP--DFYVVTYVGDKDC 191 (209)
Q Consensus 171 ~E~~~~~~--~l~v~~y~G~~~~ 191 (209)
+||.+|.. .+.+..++|..++
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~ 337 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKS 337 (776)
T ss_pred HHHHHhccccccceeeeecccch
Confidence 99999984 7888888888876
No 15
>KOG4439|consensus
Probab=99.74 E-value=2.9e-18 Score=160.67 Aligned_cols=92 Identities=29% Similarity=0.439 Sum_probs=77.1
Q ss_pred cccCCCCchHHHHHHHHHHHhhcC-CCceEEEcCCCCchHHHHHHHHHHHHhhC-------CCCCcEEEEeCcccHHHHH
Q psy14604 99 DDTGMQLHAYQLEGINWLRYSWGQ-NIDTILADEMGLGKTIQTITFLYSLFKEG-------HCKGPFLVSAPLSTIINWE 170 (209)
Q Consensus 99 ~~~~~~L~~~Q~~gv~~l~~~~~~-~~g~iLaD~mGLGKT~q~ia~l~~~~~~~-------~~~~~~LIV~P~sl~~qW~ 170 (209)
.++...|.|||..|+.||.+...+ +.||||||+||||||++.|++|..-.... ....+||||||.+|+.||.
T Consensus 320 ~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~qW~ 399 (901)
T KOG4439|consen 320 DGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLIHQWE 399 (901)
T ss_pred CcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHHHHH
Confidence 446678999999999999866554 44899999999999999999997765432 2233699999999999999
Q ss_pred HHHHHhC--CCceEEEEEcChh
Q psy14604 171 REFETWA--PDFYVVTYVGDKD 190 (209)
Q Consensus 171 ~E~~~~~--~~l~v~~y~G~~~ 190 (209)
.|+.+-+ ..|.|++|||++.
T Consensus 400 ~Ev~~rl~~n~LsV~~~HG~n~ 421 (901)
T KOG4439|consen 400 AEVARRLEQNALSVYLYHGPNK 421 (901)
T ss_pred HHHHHHHhhcceEEEEecCCcc
Confidence 9998876 5799999999995
No 16
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.70 E-value=2.8e-17 Score=159.41 Aligned_cols=91 Identities=47% Similarity=0.814 Sum_probs=82.4
Q ss_pred cCCCCchHHHHHHHHHH-HhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCC-CCcEEEEeCcccHHHHHHHHHHhCC
Q psy14604 101 TGMQLHAYQLEGINWLR-YSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC-KGPFLVSAPLSTIINWEREFETWAP 178 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~-~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~-~~~~LIV~P~sl~~qW~~E~~~~~~ 178 (209)
+...|++||.+|++||. .......+|||||+||||||+|+|+++..++..... .+|+|||||.+++.||.+|+.+|+|
T Consensus 335 ~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~~ 414 (866)
T COG0553 335 LSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFAP 414 (866)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhCc
Confidence 44679999999999999 788889999999999999999999999886665544 5799999999999999999999999
Q ss_pred Cce-EEEEEcChhH
Q psy14604 179 DFY-VVTYVGDKDC 191 (209)
Q Consensus 179 ~l~-v~~y~G~~~~ 191 (209)
.++ +.+|+|....
T Consensus 415 ~~~~~~~~~g~~~~ 428 (866)
T COG0553 415 DLRLVLVYHGEKSE 428 (866)
T ss_pred cccceeeeeCCccc
Confidence 999 9999998863
No 17
>KOG1000|consensus
Probab=99.69 E-value=5.2e-17 Score=147.82 Aligned_cols=75 Identities=31% Similarity=0.483 Sum_probs=64.7
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhCCCc
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDF 180 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~~l 180 (209)
+...|.|||++||+|.. ..++.++||||||||||+||||+......+ .|.|||||.+|...|.+++.+|+|.+
T Consensus 195 Lvs~LlPFQreGv~faL---~RgGR~llADeMGLGKTiQAlaIA~yyraE----wplliVcPAsvrftWa~al~r~lps~ 267 (689)
T KOG1000|consen 195 LVSRLLPFQREGVIFAL---ERGGRILLADEMGLGKTIQALAIARYYRAE----WPLLIVCPASVRFTWAKALNRFLPSI 267 (689)
T ss_pred HHHhhCchhhhhHHHHH---hcCCeEEEecccccchHHHHHHHHHHHhhc----CcEEEEecHHHhHHHHHHHHHhcccc
Confidence 34679999999998875 478889999999999999999997766544 58999999999999999999999864
Q ss_pred eE
Q psy14604 181 YV 182 (209)
Q Consensus 181 ~v 182 (209)
..
T Consensus 268 ~p 269 (689)
T KOG1000|consen 268 HP 269 (689)
T ss_pred cc
Confidence 43
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.59 E-value=3.4e-15 Score=147.33 Aligned_cols=85 Identities=21% Similarity=0.232 Sum_probs=68.7
Q ss_pred ccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhCCC
Q psy14604 100 DTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPD 179 (209)
Q Consensus 100 ~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~~ 179 (209)
+....|.|||...+.++... ...++|||||||||||+++++++..++..+. .+|+|||||.+|+.||..|+.+|+ +
T Consensus 148 ~~~~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g~-~~rvLIVvP~sL~~QW~~El~~kF-~ 223 (956)
T PRK04914 148 GARASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTGR-AERVLILVPETLQHQWLVEMLRRF-N 223 (956)
T ss_pred cCCCCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC-CCcEEEEcCHHHHHHHHHHHHHHh-C
Confidence 45677999999998766433 4567999999999999999999988776653 457999999999999999998876 4
Q ss_pred ceEEEEEcC
Q psy14604 180 FYVVTYVGD 188 (209)
Q Consensus 180 l~v~~y~G~ 188 (209)
+.+.+|.+.
T Consensus 224 l~~~i~~~~ 232 (956)
T PRK04914 224 LRFSLFDEE 232 (956)
T ss_pred CCeEEEcCc
Confidence 555555443
No 19
>KOG1016|consensus
Probab=99.50 E-value=3.2e-15 Score=141.61 Aligned_cols=78 Identities=35% Similarity=0.581 Sum_probs=66.3
Q ss_pred cCCCCchHHHHHHHHHHHhh---------cCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHH
Q psy14604 101 TGMQLHAYQLEGINWLRYSW---------GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWER 171 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~---------~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~ 171 (209)
+.-.|+|||+-||+||.... ..+.|||||+.||||||+|+|+|+-.+++.. ..+.+|+|+|..++.||-.
T Consensus 251 la~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT-~AKtVL~ivPiNTlQNWls 329 (1387)
T KOG1016|consen 251 LAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHT-KAKTVLVIVPINTLQNWLS 329 (1387)
T ss_pred hHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcC-ccceEEEEEehHHHHHHHH
Confidence 34568999999999995443 3556899999999999999999987776664 4567999999999999999
Q ss_pred HHHHhCCC
Q psy14604 172 EFETWAPD 179 (209)
Q Consensus 172 E~~~~~~~ 179 (209)
||.+|.|.
T Consensus 330 EfnmWiP~ 337 (1387)
T KOG1016|consen 330 EFNMWIPK 337 (1387)
T ss_pred HhhhhcCC
Confidence 99999975
No 20
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.35 E-value=4.2e-12 Score=122.28 Aligned_cols=83 Identities=20% Similarity=0.376 Sum_probs=66.7
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc-HHHHHHHHHHhC--C
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IINWEREFETWA--P 178 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl-~~qW~~E~~~~~--~ 178 (209)
...|||||.++++++.. .....+|||.+.||+|||++++++++.+ ..++|||||.++ +.||.+||.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~~-~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHh-cCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 47799999999997742 1122479999999999999999988765 356999999765 789999999996 4
Q ss_pred CceEEEEEcChhH
Q psy14604 179 DFYVVTYVGDKDC 191 (209)
Q Consensus 179 ~l~v~~y~G~~~~ 191 (209)
...+..|+|+.+.
T Consensus 326 ~~~I~~~tg~~k~ 338 (732)
T TIGR00603 326 DSQICRFTSDAKE 338 (732)
T ss_pred CceEEEEecCccc
Confidence 5677788887644
No 21
>KOG1001|consensus
Probab=99.08 E-value=1.9e-10 Score=110.40 Aligned_cols=81 Identities=27% Similarity=0.355 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHhh-cCCCceEEEcCCCCchHHHHHHHHHHHHhhCC------CCCcEEEEeCcccHHHHHHHHHHhC--
Q psy14604 107 AYQLEGINWLRYSW-GQNIDTILADEMGLGKTIQTITFLYSLFKEGH------CKGPFLVSAPLSTIINWEREFETWA-- 177 (209)
Q Consensus 107 ~~Q~~gv~~l~~~~-~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~------~~~~~LIV~P~sl~~qW~~E~~~~~-- 177 (209)
.+|..+-.|+.... ..-.|||+||+||+|||+++|++++....... ....+|||||.+++.||..|+++-.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 45555544443332 22338999999999999999999877655443 4456999999999999999996655
Q ss_pred CCceEEEEEc
Q psy14604 178 PDFYVVTYVG 187 (209)
Q Consensus 178 ~~l~v~~y~G 187 (209)
.++.+++|+|
T Consensus 215 ~~l~v~v~~g 224 (674)
T KOG1001|consen 215 DKLSIYVYHG 224 (674)
T ss_pred cceEEEEecc
Confidence 4799999999
No 22
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.06 E-value=9.2e-10 Score=87.29 Aligned_cols=74 Identities=28% Similarity=0.476 Sum_probs=61.3
Q ss_pred CCCchHHHHHHHHHHHhhcCC---CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC
Q psy14604 103 MQLHAYQLEGINWLRYSWGQN---IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP 178 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~---~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~ 178 (209)
+.|++||.+++.-+...+... ..++|...+|.|||+.+++++..+.. ++|||||. +++.||..+|..+.+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 569999999999888776655 77999999999999999998888766 69999996 888999999988875
Q ss_pred CceE
Q psy14604 179 DFYV 182 (209)
Q Consensus 179 ~l~v 182 (209)
....
T Consensus 76 ~~~~ 79 (184)
T PF04851_consen 76 EKYN 79 (184)
T ss_dssp TSEE
T ss_pred hhhh
Confidence 4333
No 23
>PRK13766 Hef nuclease; Provisional
Probab=98.86 E-value=1.8e-08 Score=98.25 Aligned_cols=88 Identities=17% Similarity=0.239 Sum_probs=68.9
Q ss_pred CccccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHH
Q psy14604 97 FLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFET 175 (209)
Q Consensus 97 ~~~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~ 175 (209)
++.....++++||.+.+..+. . ..+|+++++|+|||++++.++...+.. ..+++|||||. .++.||.++|.+
T Consensus 8 ~~~~~~~~~r~yQ~~~~~~~l----~-~n~lv~~ptG~GKT~~a~~~i~~~l~~--~~~~vLvl~Pt~~L~~Q~~~~~~~ 80 (773)
T PRK13766 8 LIKPNTIEARLYQQLLAATAL----K-KNTLVVLPTGLGKTAIALLVIAERLHK--KGGKVLILAPTKPLVEQHAEFFRK 80 (773)
T ss_pred ccCcCcCCccHHHHHHHHHHh----c-CCeEEEcCCCccHHHHHHHHHHHHHHh--CCCeEEEEeCcHHHHHHHHHHHHH
Confidence 444456789999999887664 2 279999999999999998888776632 34579999997 788999999999
Q ss_pred hCC--CceEEEEEcChhH
Q psy14604 176 WAP--DFYVVTYVGDKDC 191 (209)
Q Consensus 176 ~~~--~l~v~~y~G~~~~ 191 (209)
++. ...+.+++|+...
T Consensus 81 ~~~~~~~~v~~~~g~~~~ 98 (773)
T PRK13766 81 FLNIPEEKIVVFTGEVSP 98 (773)
T ss_pred HhCCCCceEEEEeCCCCH
Confidence 863 3588889886543
No 24
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.78 E-value=2.4e-08 Score=92.03 Aligned_cols=85 Identities=19% Similarity=0.242 Sum_probs=66.4
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCC
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPD 179 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~ 179 (209)
....|++||.++++-+...+.....|++...+|.|||+.++.++..+.. ++|||||. .++.||.+.+..++..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCC
Confidence 4578999999999866555555888999999999999999999877643 39999995 6789999888888743
Q ss_pred c-eEEEEEcChhH
Q psy14604 180 F-YVVTYVGDKDC 191 (209)
Q Consensus 180 l-~v~~y~G~~~~ 191 (209)
- .+..|.|+..+
T Consensus 107 ~~~~g~~~~~~~~ 119 (442)
T COG1061 107 NDEIGIYGGGEKE 119 (442)
T ss_pred ccccceecCceec
Confidence 2 45666665443
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.68 E-value=1.1e-07 Score=88.83 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=54.4
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA 177 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~ 177 (209)
...|++||.+++.-+. .+..+|+...+|.|||+.++.++..+.... ..++|||||. .|+.||.++|.+|.
T Consensus 112 ~~~~r~~Q~~av~~~l----~~~~~il~apTGsGKT~i~~~l~~~~~~~~--~~~vLilvpt~eL~~Q~~~~l~~~~ 182 (501)
T PHA02558 112 KIEPHWYQYDAVYEGL----KNNRRLLNLPTSAGKSLIQYLLSRYYLENY--EGKVLIIVPTTSLVTQMIDDFVDYR 182 (501)
T ss_pred cCCCCHHHHHHHHHHH----hcCceEEEeCCCCCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHHHHHHHHHHHhc
Confidence 3689999999997554 456789999999999998766543333322 2369999995 78899999999986
No 26
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.68 E-value=2.8e-07 Score=72.70 Aligned_cols=82 Identities=32% Similarity=0.416 Sum_probs=64.0
Q ss_pred CCCchHHHHHHHHHHHhhcCC-CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccHHHHHHHHHHhCCC-
Q psy14604 103 MQLHAYQLEGINWLRYSWGQN-IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPD- 179 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~-~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~~qW~~E~~~~~~~- 179 (209)
..+++||.+++..+. .. ..+++...+|.|||..++.++........ ..++||+|| ..++.||..++..+++.
T Consensus 7 ~~~~~~Q~~~~~~~~----~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 7 EPLRPYQKEAIEALL----SGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCHHHHHHHHHHH----cCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 568999999998886 44 78999999999999988888777655432 356999999 67789999999998865
Q ss_pred --ceEEEEEcCh
Q psy14604 180 --FYVVTYVGDK 189 (209)
Q Consensus 180 --l~v~~y~G~~ 189 (209)
..+..+.+..
T Consensus 82 ~~~~~~~~~~~~ 93 (201)
T smart00487 82 GLKVVGLYGGDS 93 (201)
T ss_pred CeEEEEEeCCcc
Confidence 3344455543
No 27
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.58 E-value=6.9e-07 Score=72.76 Aligned_cols=87 Identities=17% Similarity=0.118 Sum_probs=65.9
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC--CCCCcEEEEeCc-ccHHHHHHHHHHhCC--
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG--HCKGPFLVSAPL-STIINWEREFETWAP-- 178 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~--~~~~~~LIV~P~-sl~~qW~~E~~~~~~-- 178 (209)
.|++||.++++-+. .+...++...+|.|||+..+..+....... .....+|||||. .++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~----~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLL----SGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 48999999997665 477899999999999998655544444443 233459999995 677889999999863
Q ss_pred CceEEEEEcChhHHHH
Q psy14604 179 DFYVVTYVGDKDCRIV 194 (209)
Q Consensus 179 ~l~v~~y~G~~~~r~~ 194 (209)
++++..++|+......
T Consensus 97 ~~~~~~~~~~~~~~~~ 112 (203)
T cd00268 97 NLKVVVIYGGTSIDKQ 112 (203)
T ss_pred CceEEEEECCCCHHHH
Confidence 6788888887765443
No 28
>KOG0298|consensus
Probab=98.53 E-value=1.1e-07 Score=94.97 Aligned_cols=68 Identities=24% Similarity=0.323 Sum_probs=54.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhh---------------CCCCCcEEEEeCcccHHHHHHHHHHhCCCc-eEEEEEcC
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKE---------------GHCKGPFLVSAPLSTIINWEREFETWAPDF-YVVTYVGD 188 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~---------------~~~~~~~LIV~P~sl~~qW~~E~~~~~~~l-~v~~y~G~ 188 (209)
.+++||+||+|||+..++........ ....+.||||||.+++.||-.||.++++++ .|+.|.|-
T Consensus 376 ~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y~Gi 455 (1394)
T KOG0298|consen 376 RVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLYFGI 455 (1394)
T ss_pred ceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEEech
Confidence 46999999999999999875433211 112357999999999999999999999766 99999998
Q ss_pred hhHH
Q psy14604 189 KDCR 192 (209)
Q Consensus 189 ~~~r 192 (209)
.+.-
T Consensus 456 rk~~ 459 (1394)
T KOG0298|consen 456 RKTF 459 (1394)
T ss_pred hhhc
Confidence 7543
No 29
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.33 E-value=1.7e-06 Score=87.77 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=61.3
Q ss_pred CCCCchHHHHHHHHHHHhhcC-CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccHHHHHHHHHHhC
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQ-NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWA 177 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~-~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~~qW~~E~~~~~ 177 (209)
...||+||.++|+-+...+.. ..+++|.+.+|.|||+++++++..++..... ..+|||+| ..|+.||.++|..+.
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~-~rVLfLvDR~~L~~Qa~~~F~~~~ 487 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRF-RRILFLVDRSALGEQAEDAFKDTK 487 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCcc-CeEEEEecHHHHHHHHHHHHHhcc
Confidence 367999999999877655543 3578999999999999999998887765433 46999999 578899999999874
No 30
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.31 E-value=4.1e-06 Score=62.12 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=52.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH-HHHHHHHHHhCC-CceEEEEEcChhHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFETWAP-DFYVVTYVGDKDCRI 193 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~-~qW~~E~~~~~~-~l~v~~y~G~~~~r~ 193 (209)
++++...+|.|||.+++.++..+.... ..+.+||+||...+ .+|...+..|.. .+.+.++++......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQ 71 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhH
Confidence 578999999999999999998887652 34579999997765 456777777774 577777777766554
No 31
>KOG1123|consensus
Probab=98.23 E-value=6.6e-07 Score=82.75 Aligned_cols=82 Identities=22% Similarity=0.443 Sum_probs=65.5
Q ss_pred CCCCchHHHHHHHHHHHhhcCCC--ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc-HHHHHHHHHHhC-
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IINWEREFETWA- 177 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~--g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl-~~qW~~E~~~~~- 177 (209)
..++||||...++.| +.++. +||+.-..|.|||+..++.++.+. +.+||+|..++ +.||..+|..|.
T Consensus 300 st~iRpYQEksL~KM---FGNgRARSGiIVLPCGAGKtLVGvTAa~tik------K~clvLcts~VSVeQWkqQfk~wst 370 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKTLVGVTAACTIK------KSCLVLCTSAVSVEQWKQQFKQWST 370 (776)
T ss_pred ccccCchHHHHHHHH---hCCCcccCceEEEecCCCCceeeeeeeeeec------ccEEEEecCccCHHHHHHHHHhhcc
Confidence 357899999999877 33433 699999999999999988877653 34899999777 899999999997
Q ss_pred -CCceEEEEEcChhHH
Q psy14604 178 -PDFYVVTYVGDKDCR 192 (209)
Q Consensus 178 -~~l~v~~y~G~~~~r 192 (209)
.+-.++.++.+.+++
T Consensus 371 i~d~~i~rFTsd~Ke~ 386 (776)
T KOG1123|consen 371 IQDDQICRFTSDAKER 386 (776)
T ss_pred cCccceEEeecccccc
Confidence 355677777776654
No 32
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.22 E-value=1.3e-05 Score=73.87 Aligned_cols=87 Identities=20% Similarity=0.160 Sum_probs=65.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC---CC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA---PD 179 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~---~~ 179 (209)
.+.|+|.+++..+. .+...|+...+|.|||...+..+............+||+||. .|+.||.+++..+. ++
T Consensus 26 ~~t~iQ~~ai~~~l----~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 26 EMTPIQAQSLPAIL----AGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 47899999998776 677899999999999987555444443333222348999995 67789999998874 57
Q ss_pred ceEEEEEcChhHHHH
Q psy14604 180 FYVVTYVGDKDCRIV 194 (209)
Q Consensus 180 l~v~~y~G~~~~r~~ 194 (209)
+++..++|+......
T Consensus 102 ~~v~~~~Gg~~~~~~ 116 (460)
T PRK11776 102 IKVLTLCGGVPMGPQ 116 (460)
T ss_pred cEEEEEECCCChHHH
Confidence 889988887655433
No 33
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.18 E-value=4.8e-06 Score=80.53 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=61.5
Q ss_pred CCCCchHHHHHHHHHHHhhcC------CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccHHHHHHHHH
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQ------NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFE 174 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~------~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~~qW~~E~~ 174 (209)
...+++||..||+-+...... ..+|++.+.+|.|||++++.++..++... ....+||||| ..|..||.++|.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~-~~~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL-KNPKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc-CCCeEEEEECcHHHHHHHHHHHH
Confidence 456899999999988776654 35799999999999999998887776433 2345899999 568899999999
Q ss_pred HhCC
Q psy14604 175 TWAP 178 (209)
Q Consensus 175 ~~~~ 178 (209)
.+.+
T Consensus 315 ~~~~ 318 (667)
T TIGR00348 315 SLQK 318 (667)
T ss_pred hhCC
Confidence 9874
No 34
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.16 E-value=1.7e-05 Score=76.27 Aligned_cols=86 Identities=20% Similarity=0.156 Sum_probs=63.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC---C
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA---P 178 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~---~ 178 (209)
..+.|+|.+++..+. .+...|+.-.+|.|||+..+..++..+........+|||||. .|+.||.+++..|. +
T Consensus 27 ~~ptpiQ~~ai~~ll----~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHLL----NGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 358899999998775 667788899999999998644433333322223358999995 67799999998874 5
Q ss_pred CceEEEEEcChhHH
Q psy14604 179 DFYVVTYVGDKDCR 192 (209)
Q Consensus 179 ~l~v~~y~G~~~~r 192 (209)
.++++.++|..+..
T Consensus 103 ~i~v~~~~gG~~~~ 116 (629)
T PRK11634 103 GVNVVALYGGQRYD 116 (629)
T ss_pred CceEEEEECCcCHH
Confidence 78888888876543
No 35
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.11 E-value=1.7e-05 Score=76.13 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=68.6
Q ss_pred cccCCCCchHHHHHHHHHHHhhcCC--CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHH
Q psy14604 99 DDTGMQLHAYQLEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFET 175 (209)
Q Consensus 99 ~~~~~~L~~~Q~~gv~~l~~~~~~~--~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~ 175 (209)
..+.+.|.++|..++..+..-.... ...+|.-++|.|||+.++..+...... ...+||++|. .|+.||.+++.+
T Consensus 230 ~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 230 ASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred HhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHHHHHHH
Confidence 3456789999999999886544332 246888999999999877655555443 2359999996 556889999999
Q ss_pred hCC--CceEEEEEcChhH
Q psy14604 176 WAP--DFYVVTYVGDKDC 191 (209)
Q Consensus 176 ~~~--~l~v~~y~G~~~~ 191 (209)
|++ ++++.+++|+...
T Consensus 307 l~~~~gi~v~lltg~~~~ 324 (630)
T TIGR00643 307 LLAPLGIEVALLTGSLKG 324 (630)
T ss_pred HhcccCcEEEEEecCCCH
Confidence 986 5899999998643
No 36
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.02 E-value=5.9e-05 Score=59.06 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccHHHHHHHHHHhCC--CceEE
Q psy14604 107 AYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP--DFYVV 183 (209)
Q Consensus 107 ~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~~qW~~E~~~~~~--~l~v~ 183 (209)
|+|.+++.-+. .+...++...+|.|||...+..+....... ....+||+|| ..++.|=.+++..++. .+++.
T Consensus 2 ~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 78999987665 567799999999999999887776666554 3346999999 4678888999999874 57888
Q ss_pred EEEcChh
Q psy14604 184 TYVGDKD 190 (209)
Q Consensus 184 ~y~G~~~ 190 (209)
.++|+..
T Consensus 77 ~~~~~~~ 83 (169)
T PF00270_consen 77 LLHGGQS 83 (169)
T ss_dssp EESTTSC
T ss_pred ccccccc
Confidence 8888664
No 37
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.02 E-value=1.6e-05 Score=77.30 Aligned_cols=83 Identities=22% Similarity=0.239 Sum_probs=71.1
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCC-ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccHHHHHHHHHHhCC
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNI-DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP 178 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~-g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~~qW~~E~~~~~~ 178 (209)
....+|.||..+|+.+...+.++. ..+|.+.+|.|||.+|+++|..|...+...+ +|.++- .+|+.|=..+|..|.|
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KR-VLFLaDR~~Lv~QA~~af~~~~P 240 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKR-VLFLADRNALVDQAYGAFEDFLP 240 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhhe-eeEEechHHHHHHHHHHHHHhCC
Confidence 456799999999999988887766 5899999999999999999999988876554 898888 6888999999999998
Q ss_pred CceEEE
Q psy14604 179 DFYVVT 184 (209)
Q Consensus 179 ~l~v~~ 184 (209)
...++.
T Consensus 241 ~~~~~n 246 (875)
T COG4096 241 FGTKMN 246 (875)
T ss_pred Ccccee
Confidence 655444
No 38
>PTZ00424 helicase 45; Provisional
Probab=97.93 E-value=9.4e-05 Score=66.46 Aligned_cols=84 Identities=20% Similarity=0.149 Sum_probs=59.5
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC--Cc
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DF 180 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~--~l 180 (209)
.+.|+|..++..+. .+...|+...+|.|||+..+..+............+|||+|. .|+.|+.+.+..+.. .+
T Consensus 50 ~~~~~Q~~ai~~i~----~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 50 KPSAIQQRGIKPIL----DGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 58999999998776 677789999999999987655544443332223458999995 567888888777753 45
Q ss_pred eEEEEEcChhH
Q psy14604 181 YVVTYVGDKDC 191 (209)
Q Consensus 181 ~v~~y~G~~~~ 191 (209)
.+..+.|+...
T Consensus 126 ~~~~~~g~~~~ 136 (401)
T PTZ00424 126 RCHACVGGTVV 136 (401)
T ss_pred eEEEEECCcCH
Confidence 55556665543
No 39
>PRK01172 ski2-like helicase; Provisional
Probab=97.91 E-value=7.3e-05 Score=72.24 Aligned_cols=82 Identities=23% Similarity=0.251 Sum_probs=63.6
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC-CC
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA-PD 179 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~-~~ 179 (209)
++.|+++|.+++.-+. .+...|++..+|.|||+.+...+...+.. ...+|+|+|. +|+.|+.+++.+|. ..
T Consensus 20 ~~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g 92 (674)
T PRK01172 20 DFELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLG 92 (674)
T ss_pred CCCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcC
Confidence 4579999999998653 67789999999999999887666555443 2458999995 67788999998875 35
Q ss_pred ceEEEEEcChh
Q psy14604 180 FYVVTYVGDKD 190 (209)
Q Consensus 180 l~v~~y~G~~~ 190 (209)
+.|..++|+..
T Consensus 93 ~~v~~~~G~~~ 103 (674)
T PRK01172 93 MRVKISIGDYD 103 (674)
T ss_pred CeEEEEeCCCC
Confidence 77878877643
No 40
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=97.90 E-value=0.00011 Score=67.78 Aligned_cols=84 Identities=13% Similarity=0.109 Sum_probs=61.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCC------CCCcEEEEeCc-ccHHHHHHHHHH
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH------CKGPFLVSAPL-STIINWEREFET 175 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~------~~~~~LIV~P~-sl~~qW~~E~~~ 175 (209)
..+.|+|.+++.-+. .+...|+...+|.|||+..+..+...+.... ....+|||||. .|+.||.+++..
T Consensus 22 ~~pt~iQ~~ai~~il----~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 22 REPTPIQQQAIPAVL----EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 357899999998665 6778999999999999987665544433211 11248999995 677899999998
Q ss_pred hCC--CceEEEEEcChh
Q psy14604 176 WAP--DFYVVTYVGDKD 190 (209)
Q Consensus 176 ~~~--~l~v~~y~G~~~ 190 (209)
|+. .+.++.++|+..
T Consensus 98 ~~~~~~~~~~~~~gg~~ 114 (456)
T PRK10590 98 YSKYLNIRSLVVFGGVS 114 (456)
T ss_pred HhccCCCEEEEEECCcC
Confidence 863 566666776654
No 41
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.89 E-value=6.9e-05 Score=72.70 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=68.3
Q ss_pred ccCCCCchHHHHHHHHHHHhhcCC--CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHh
Q psy14604 100 DTGMQLHAYQLEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETW 176 (209)
Q Consensus 100 ~~~~~L~~~Q~~gv~~l~~~~~~~--~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~ 176 (209)
.+.+.|.++|..++.-+..-+... ...+|.-++|.|||+.++..+...... ...+||++|. .|+.|..+.|.+|
T Consensus 257 ~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA~Q~~~~l~~l 333 (681)
T PRK10917 257 SLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILAEQHYENLKKL 333 (681)
T ss_pred hCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHHHHHHHHHHHH
Confidence 355789999999998776544332 246888899999999887766555443 2359999996 5668899999999
Q ss_pred CCC--ceEEEEEcChhH
Q psy14604 177 APD--FYVVTYVGDKDC 191 (209)
Q Consensus 177 ~~~--l~v~~y~G~~~~ 191 (209)
+++ +++.+++|+.+.
T Consensus 334 ~~~~~i~v~ll~G~~~~ 350 (681)
T PRK10917 334 LEPLGIRVALLTGSLKG 350 (681)
T ss_pred HhhcCcEEEEEcCCCCH
Confidence 854 789999998753
No 42
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.89 E-value=0.00012 Score=67.76 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=61.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCC-C------CCcEEEEeCc-ccHHHHHHHHH
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH-C------KGPFLVSAPL-STIINWEREFE 174 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~-~------~~~~LIV~P~-sl~~qW~~E~~ 174 (209)
..+.+||.+++..+. .+...|+...+|.|||+..+-.+...+.... . ...+|||+|. .|+.|+.+++.
T Consensus 108 ~~~~~iQ~~ai~~~~----~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYTL----AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 348999999998776 7778999999999999875544333322211 0 2358999995 67788999988
Q ss_pred HhCC--CceEEEEEcChhH
Q psy14604 175 TWAP--DFYVVTYVGDKDC 191 (209)
Q Consensus 175 ~~~~--~l~v~~y~G~~~~ 191 (209)
.+.. ++++..++|+.+.
T Consensus 184 ~l~~~~~~~v~~~~gg~~~ 202 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDF 202 (475)
T ss_pred HhhccCCCEEEEEEccCCh
Confidence 8753 5788888887543
No 43
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.89 E-value=0.00013 Score=66.59 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=62.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCC-------CCCcEEEEeCc-ccHHHHHHHHHH
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH-------CKGPFLVSAPL-STIINWEREFET 175 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~-------~~~~~LIV~P~-sl~~qW~~E~~~ 175 (209)
.+.|.|.+++.-+. .+...|+...+|.|||+..+..+...+.... ....+|||||. .|+.||.+++..
T Consensus 30 ~pt~iQ~~aip~il----~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLTL----AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHHh----CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 56799999997665 7788999999999999987655443332211 11248999995 677999999888
Q ss_pred hC--CCceEEEEEcChhHH
Q psy14604 176 WA--PDFYVVTYVGDKDCR 192 (209)
Q Consensus 176 ~~--~~l~v~~y~G~~~~r 192 (209)
+. .++.+..++|+....
T Consensus 106 l~~~~~~~v~~~~gg~~~~ 124 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYD 124 (423)
T ss_pred HhccCCceEEEEECCCCHH
Confidence 75 367888888875433
No 44
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=97.89 E-value=9.5e-05 Score=67.51 Aligned_cols=84 Identities=17% Similarity=0.103 Sum_probs=61.5
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC----CCCCcEEEEeCc-ccHHHHHHHHHHhC-
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG----HCKGPFLVSAPL-STIINWEREFETWA- 177 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~----~~~~~~LIV~P~-sl~~qW~~E~~~~~- 177 (209)
.+.++|.+++..+. .+...|+...+|.|||+..+..++..+... .....+||++|. .|+.|+.+.+..|.
T Consensus 23 ~p~~iQ~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 23 RPTAIQAEAIPPAL----DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 47899999997665 667789999999999998655444332211 112358999995 57788988888875
Q ss_pred -CCceEEEEEcChhH
Q psy14604 178 -PDFYVVTYVGDKDC 191 (209)
Q Consensus 178 -~~l~v~~y~G~~~~ 191 (209)
.++.+..++|+...
T Consensus 99 ~~~~~v~~~~gg~~~ 113 (434)
T PRK11192 99 HTHLDIATITGGVAY 113 (434)
T ss_pred cCCcEEEEEECCCCH
Confidence 36788888887643
No 45
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.84 E-value=0.00018 Score=69.89 Aligned_cols=84 Identities=17% Similarity=0.084 Sum_probs=65.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCce
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFY 181 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l~ 181 (209)
..|.++|.++++.+...+ .....+|...+|.|||...+.++......+ +.+||+||. .|+.||.+.|..++ ...
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g---~~vLvLvPt~~L~~Q~~~~l~~~f-g~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG---KQALVLVPEIALTPQMLARFRARF-GAP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHh-CCC
Confidence 568999999998876433 234588888999999998887776655543 459999995 57799999999887 468
Q ss_pred EEEEEcChhH
Q psy14604 182 VVTYVGDKDC 191 (209)
Q Consensus 182 v~~y~G~~~~ 191 (209)
+.+++|....
T Consensus 218 v~~~~s~~s~ 227 (679)
T PRK05580 218 VAVLHSGLSD 227 (679)
T ss_pred EEEEECCCCH
Confidence 8899987543
No 46
>PRK02362 ski2-like helicase; Provisional
Probab=97.83 E-value=0.0001 Score=71.96 Aligned_cols=83 Identities=20% Similarity=0.124 Sum_probs=63.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccHHHHHHHHHHhCC-Cc
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP-DF 180 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~~qW~~E~~~~~~-~l 180 (209)
..|+|+|.+++.-+ +..+...|++-.+|.|||+.+...+...... .+.+|+|+| .+|+.|+.++|.+|.+ .+
T Consensus 22 ~~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 22 EELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred CcCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 36899999998642 2367789999999999999886554444332 346999999 5788999999998753 68
Q ss_pred eEEEEEcChhH
Q psy14604 181 YVVTYVGDKDC 191 (209)
Q Consensus 181 ~v~~y~G~~~~ 191 (209)
+|.+++|+...
T Consensus 96 ~v~~~tGd~~~ 106 (737)
T PRK02362 96 RVGISTGDYDS 106 (737)
T ss_pred EEEEEeCCcCc
Confidence 89999987643
No 47
>PTZ00110 helicase; Provisional
Probab=97.76 E-value=0.00023 Score=67.41 Aligned_cols=84 Identities=17% Similarity=0.103 Sum_probs=59.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHH-HHHHHHhhCC----CCCcEEEEeCc-ccHHHHHHHHHHhC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTIT-FLYSLFKEGH----CKGPFLVSAPL-STIINWEREFETWA 177 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia-~l~~~~~~~~----~~~~~LIV~P~-sl~~qW~~E~~~~~ 177 (209)
.+.|+|.+++..+. .+...|+...+|.|||+..+. +|..+..... ....+|||||. .|+.|+.+++.+|.
T Consensus 152 ~pt~iQ~~aip~~l----~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIAL----SGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHHh----cCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 48899999987665 677899999999999997543 3333332211 11237999995 67789999999997
Q ss_pred C--CceEEEEEcChhH
Q psy14604 178 P--DFYVVTYVGDKDC 191 (209)
Q Consensus 178 ~--~l~v~~y~G~~~~ 191 (209)
. .+++.+++|....
T Consensus 228 ~~~~i~~~~~~gg~~~ 243 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPK 243 (545)
T ss_pred cccCccEEEEeCCCCH
Confidence 4 4666666665443
No 48
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=97.64 E-value=0.00044 Score=64.98 Aligned_cols=83 Identities=16% Similarity=0.130 Sum_probs=58.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHH-HHhh------CCCCCcEEEEeCc-ccHHHHHHHHH
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYS-LFKE------GHCKGPFLVSAPL-STIINWEREFE 174 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~-~~~~------~~~~~~~LIV~P~-sl~~qW~~E~~ 174 (209)
..+.|+|.+++..+. .+...|+...+|.|||+..+..+.. +... ......+|||+|. .|+.|+.+++.
T Consensus 142 ~~ptpiQ~~aip~il----~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAAL----SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 358899999998765 6778999999999999976554433 2211 1122358999995 57788999998
Q ss_pred HhCC--CceEEEEEcCh
Q psy14604 175 TWAP--DFYVVTYVGDK 189 (209)
Q Consensus 175 ~~~~--~l~v~~y~G~~ 189 (209)
.+.. .+.++.+.|..
T Consensus 218 ~l~~~~~~~~~~~~gG~ 234 (518)
T PLN00206 218 VLGKGLPFKTALVVGGD 234 (518)
T ss_pred HHhCCCCceEEEEECCc
Confidence 8864 34555555443
No 49
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.63 E-value=0.00052 Score=65.37 Aligned_cols=85 Identities=14% Similarity=0.105 Sum_probs=63.1
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC------C-CCCcEEEEeCc-ccHHHHHHHHH
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG------H-CKGPFLVSAPL-STIINWEREFE 174 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~------~-~~~~~LIV~P~-sl~~qW~~E~~ 174 (209)
..+.|.|.+++..+. .+...|+.-.+|.|||+..+..++..+... . ....+|||||. .|+.|+.+++.
T Consensus 30 ~~ptpiQ~~~ip~~l----~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~ 105 (572)
T PRK04537 30 TRCTPIQALTLPVAL----PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAV 105 (572)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 357899999998776 778899999999999998766554433211 0 12358999995 67789999999
Q ss_pred HhCC--CceEEEEEcChhH
Q psy14604 175 TWAP--DFYVVTYVGDKDC 191 (209)
Q Consensus 175 ~~~~--~l~v~~y~G~~~~ 191 (209)
+|.. .+.+..++|....
T Consensus 106 ~l~~~~~i~v~~l~Gg~~~ 124 (572)
T PRK04537 106 KFGADLGLRFALVYGGVDY 124 (572)
T ss_pred HHhccCCceEEEEECCCCH
Confidence 9874 4677777776543
No 50
>PRK00254 ski2-like helicase; Provisional
Probab=97.58 E-value=0.00043 Score=67.55 Aligned_cols=82 Identities=26% Similarity=0.333 Sum_probs=61.7
Q ss_pred CCCchHHHHHHH-HHHHhhcCCCceEEEcCCCCchHHHHHHHH-HHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC-
Q psy14604 103 MQLHAYQLEGIN-WLRYSWGQNIDTILADEMGLGKTIQTITFL-YSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP- 178 (209)
Q Consensus 103 ~~L~~~Q~~gv~-~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l-~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~- 178 (209)
..|.|+|.+++. ++. .+...|++..+|.|||+.+...+ ..+... ...+|+|+|. .|+.|+.++|..|..
T Consensus 22 ~~l~~~Q~~ai~~~~~----~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~aLa~q~~~~~~~~~~~ 94 (720)
T PRK00254 22 EELYPPQAEALKSGVL----EGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLKALAEEKYREFKDWEKL 94 (720)
T ss_pred CCCCHHHHHHHHHHHh----CCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHHHHHHHHHHHhhc
Confidence 358999999986 333 67789999999999999885443 333322 3468999995 677889999988752
Q ss_pred CceEEEEEcChhH
Q psy14604 179 DFYVVTYVGDKDC 191 (209)
Q Consensus 179 ~l~v~~y~G~~~~ 191 (209)
++.|..++|+...
T Consensus 95 g~~v~~~~Gd~~~ 107 (720)
T PRK00254 95 GLRVAMTTGDYDS 107 (720)
T ss_pred CCEEEEEeCCCCC
Confidence 6788888887653
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=97.54 E-value=0.00073 Score=67.73 Aligned_cols=86 Identities=14% Similarity=0.175 Sum_probs=63.4
Q ss_pred cCCCCchHHHHHHHHHHHhhcCC--CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA 177 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~--~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~ 177 (209)
+++.|.|.|..++.-+..-+... ...++.-++|.|||..++..+......+ ..+||+||. .|+.|..+.|.+++
T Consensus 448 ~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~~LA~Q~~~~f~~~~ 524 (926)
T TIGR00580 448 FPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTTLLAQQHFETFKERF 524 (926)
T ss_pred CCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcHHHHHHHHHHHHHHh
Confidence 44678999999999887544433 3579999999999998776555444333 359999996 55688999999887
Q ss_pred CC--ceEEEEEcCh
Q psy14604 178 PD--FYVVTYVGDK 189 (209)
Q Consensus 178 ~~--l~v~~y~G~~ 189 (209)
.+ +++.+++|..
T Consensus 525 ~~~~i~v~~Lsg~~ 538 (926)
T TIGR00580 525 ANFPVTIELLSRFR 538 (926)
T ss_pred ccCCcEEEEEeccc
Confidence 54 5666777654
No 52
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.00041 Score=64.43 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=66.5
Q ss_pred CccccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHH
Q psy14604 97 FLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFET 175 (209)
Q Consensus 97 ~~~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~ 175 (209)
++.....+.|.||..-+.-.. ...++++..+|||||+.|+.++...+.... +.+|+++|. =|+.|=.+-+.+
T Consensus 8 ~i~p~~ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--~kvlfLAPTKPLV~Qh~~~~~~ 80 (542)
T COG1111 8 LIKPNTIEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWFG--GKVLFLAPTKPLVLQHAEFCRK 80 (542)
T ss_pred ccccccccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhcC--CeEEEecCCchHHHHHHHHHHH
Confidence 444556788999987654332 237999999999999999999887766543 369999995 567887777888
Q ss_pred hC--CCceEEEEEcChhH
Q psy14604 176 WA--PDFYVVTYVGDKDC 191 (209)
Q Consensus 176 ~~--~~l~v~~y~G~~~~ 191 (209)
++ |.-.++.++|..+.
T Consensus 81 v~~ip~~~i~~ltGev~p 98 (542)
T COG1111 81 VTGIPEDEIAALTGEVRP 98 (542)
T ss_pred HhCCChhheeeecCCCCh
Confidence 76 67788888887543
No 53
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.46 E-value=0.00087 Score=66.90 Aligned_cols=85 Identities=22% Similarity=0.315 Sum_probs=59.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHH-HHhhC-----CCCCcEEEEeCc-ccHHHHHHH----
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYS-LFKEG-----HCKGPFLVSAPL-STIINWERE---- 172 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~-~~~~~-----~~~~~~LIV~P~-sl~~qW~~E---- 172 (209)
.|.|+|.+++.-+. .+..+|+...+|.|||+.++..+.. +.... .....+|+|+|. .|+.|+.+.
T Consensus 32 ~~tpiQ~~Ai~~il----~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~ 107 (876)
T PRK13767 32 TFTPPQRYAIPLIH----EGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEP 107 (876)
T ss_pred CCCHHHHHHHHHHH----cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHH
Confidence 58999999987664 6778999999999999987654433 33221 112248999995 556666653
Q ss_pred ---HHHhC-------CCceEEEEEcChhHH
Q psy14604 173 ---FETWA-------PDFYVVTYVGDKDCR 192 (209)
Q Consensus 173 ---~~~~~-------~~l~v~~y~G~~~~r 192 (209)
+..|+ +.+.+.+++|+....
T Consensus 108 l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~ 137 (876)
T PRK13767 108 LTEIREIAKERGEELPEIRVAIRTGDTSSY 137 (876)
T ss_pred HHHHHHHHHhcCCCcCCeeEEEEcCCCCHH
Confidence 33342 477899999986543
No 54
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.45 E-value=0.00095 Score=65.50 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=62.9
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC-CCce
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA-PDFY 181 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~-~~l~ 181 (209)
.|++||.+++..+. .+...|+.-.+|.|||+..+.-+...+... ....+|||||. .|+.|=.++|..+. .+++
T Consensus 36 ~p~~~Q~~ai~~il----~G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~ 110 (742)
T TIGR03817 36 RPWQHQARAAELAH----AGRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAADQLRAVRELTLRGVR 110 (742)
T ss_pred cCCHHHHHHHHHHH----CCCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHHHHHHHHHHhccCCeE
Confidence 59999999998776 778899999999999998655444333332 23358999995 56677777788875 4688
Q ss_pred EEEEEcChhH
Q psy14604 182 VVTYVGDKDC 191 (209)
Q Consensus 182 v~~y~G~~~~ 191 (209)
+.+|+|+...
T Consensus 111 v~~~~Gdt~~ 120 (742)
T TIGR03817 111 PATYDGDTPT 120 (742)
T ss_pred EEEEeCCCCH
Confidence 9999998654
No 55
>PRK09401 reverse gyrase; Reviewed
Probab=97.45 E-value=0.00082 Score=68.91 Aligned_cols=79 Identities=15% Similarity=0.082 Sum_probs=55.8
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC-
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP- 178 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~- 178 (209)
++..+.++|..++..+. .+...++...+|.|||.-.+..+ ++... ....+|||||. .|+.||.+.|..++.
T Consensus 77 ~G~~pt~iQ~~~i~~il----~g~dv~i~ApTGsGKT~f~l~~~--~~l~~-~g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 77 TGSKPWSLQRTWAKRLL----LGESFAIIAPTGVGKTTFGLVMS--LYLAK-KGKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred cCCCCcHHHHHHHHHHH----CCCcEEEEcCCCCCHHHHHHHHH--HHHHh-cCCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 46789999999886655 67788888899999996433322 22221 23469999995 677999999999974
Q ss_pred -CceEEEEE
Q psy14604 179 -DFYVVTYV 186 (209)
Q Consensus 179 -~l~v~~y~ 186 (209)
.+.+.+..
T Consensus 150 ~~~~~~~~~ 158 (1176)
T PRK09401 150 VGCGVKILY 158 (1176)
T ss_pred cCceEEEEE
Confidence 34444333
No 56
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.39 E-value=0.00064 Score=66.83 Aligned_cols=84 Identities=23% Similarity=0.236 Sum_probs=68.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC-CCce
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA-PDFY 181 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~-~~l~ 181 (209)
+|+|+|+.+|.-.. ..+...|++-.+|.|||+.++.+|.....++ .++++-|||+ +|+.+=.+||.+|. -.++
T Consensus 31 el~~~qq~av~~~~---~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGL---LSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhccc---cCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 79999999986332 2367899999999999999988887777664 4679999994 77788999999654 3899
Q ss_pred EEEEEcChhHH
Q psy14604 182 VVTYVGDKDCR 192 (209)
Q Consensus 182 v~~y~G~~~~r 192 (209)
|.+++|+....
T Consensus 106 V~~~TgD~~~~ 116 (766)
T COG1204 106 VGISTGDYDLD 116 (766)
T ss_pred EEEecCCcccc
Confidence 99999998744
No 57
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.36 E-value=0.0014 Score=60.87 Aligned_cols=76 Identities=21% Similarity=0.148 Sum_probs=54.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCce
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFY 181 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l~ 181 (209)
..++|+|.+++.-+. .+..+++...+|.|||+..+..+ +.. .+.+|||+|. +|+.++...+..+ .+.
T Consensus 10 ~~~r~~Q~~ai~~~l----~g~dvlv~apTGsGKTl~y~lp~--l~~----~~~~lVi~P~~~L~~dq~~~l~~~--gi~ 77 (470)
T TIGR00614 10 SSFRPVQLEVINAVL----LGRDCFVVMPTGGGKSLCYQLPA--LCS----DGITLVISPLISLMEDQVLQLKAS--GIP 77 (470)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCCcHhHHHHHHH--HHc----CCcEEEEecHHHHHHHHHHHHHHc--CCc
Confidence 358999999998665 66789999999999998543222 221 3458999995 6778898888875 345
Q ss_pred EEEEEcChh
Q psy14604 182 VVTYVGDKD 190 (209)
Q Consensus 182 v~~y~G~~~ 190 (209)
+..+.|+..
T Consensus 78 ~~~l~~~~~ 86 (470)
T TIGR00614 78 ATFLNSSQS 86 (470)
T ss_pred EEEEeCCCC
Confidence 555555543
No 58
>PRK10689 transcription-repair coupling factor; Provisional
Probab=97.33 E-value=0.0015 Score=66.79 Aligned_cols=85 Identities=14% Similarity=0.145 Sum_probs=59.1
Q ss_pred cCCCCchHHHHHHHHHHHhhcCC--CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHHHHHHHHHhC
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETWA 177 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~--~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~qW~~E~~~~~ 177 (209)
+.+.+.+.|.+++.-+..-+... ...++..++|.|||.+++-.+...... ...+||+||.. |+.|..+.|..++
T Consensus 597 ~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~Q~~~~f~~~~ 673 (1147)
T PRK10689 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQQHYDNFRDRF 673 (1147)
T ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHhh
Confidence 45678999999998665433322 457999999999999876443333322 34699999965 5588999988766
Q ss_pred CC--ceEEEEEcC
Q psy14604 178 PD--FYVVTYVGD 188 (209)
Q Consensus 178 ~~--l~v~~y~G~ 188 (209)
.. +++.+++|.
T Consensus 674 ~~~~v~i~~l~g~ 686 (1147)
T PRK10689 674 ANWPVRIEMLSRF 686 (1147)
T ss_pred ccCCceEEEEECC
Confidence 43 566666554
No 59
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.32 E-value=0.0015 Score=64.00 Aligned_cols=78 Identities=15% Similarity=0.047 Sum_probs=52.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC--CCc
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA--PDF 180 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~--~~l 180 (209)
.|+|||.+.+..+. .+.|.|.-..+|-|||++++..++.... ....++||+|. .|+.||.+++..++ -.+
T Consensus 68 glrpydVQlig~l~----l~~G~Iaem~TGeGKTLta~Lpa~l~aL---~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIV----LHQGNIAEMKTGEGKTLTATMPLYLNAL---TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHH----hcCCceeEecCCcchHHHHHHHHHHHhh---cCCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 45677666665443 4556899999999999997765432222 23458999995 57788888876654 266
Q ss_pred eEEEEEcC
Q psy14604 181 YVVTYVGD 188 (209)
Q Consensus 181 ~v~~y~G~ 188 (209)
.|.+.+++
T Consensus 141 sv~~~~~~ 148 (762)
T TIGR03714 141 TVSLGVVD 148 (762)
T ss_pred cEEEEECC
Confidence 77665543
No 60
>KOG0354|consensus
Probab=97.30 E-value=0.00085 Score=65.14 Aligned_cols=88 Identities=25% Similarity=0.257 Sum_probs=64.9
Q ss_pred cccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHHHHHHHHHhC
Q psy14604 99 DDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETWA 177 (209)
Q Consensus 99 ~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~qW~~E~~~~~ 177 (209)
....+.||+||.+-+.-. + +...|+|-.+|+|||+.|+.++...+.... .+.+++.+|.. |+.|=...|..++
T Consensus 57 ~p~~~~lR~YQ~eivq~A---L--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p-~~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354|consen 57 YPTNLELRNYQEELVQPA---L--GKNTIIALPTGSGKTFIAAVIMKNHFEWRP-KGKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred ccCcccccHHHHHHhHHh---h--cCCeEEEeecCCCccchHHHHHHHHHhcCC-cceEEEeeCCchHHHHHHHHHhhcc
Confidence 345688999999977433 3 777999999999999999888777666544 46799999965 4555558888887
Q ss_pred CCceEEEEEcChhHH
Q psy14604 178 PDFYVVTYVGDKDCR 192 (209)
Q Consensus 178 ~~l~v~~y~G~~~~r 192 (209)
-.-.+....|+...+
T Consensus 131 ~~~~~T~~l~~~~~~ 145 (746)
T KOG0354|consen 131 IPYSVTGQLGDTVPR 145 (746)
T ss_pred CcccceeeccCccCC
Confidence 445666666664444
No 61
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.21 E-value=0.0017 Score=66.69 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=59.1
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCC
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPD 179 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~ 179 (209)
.+..+.++|..++..+. .+...++...+|.|||.-++.++..+... ...+|||+|. .|+.|+.++|..++..
T Consensus 75 ~g~~p~~iQ~~~i~~il----~G~d~vi~ApTGsGKT~f~l~~~~~l~~~---g~~vLIL~PTreLa~Qi~~~l~~l~~~ 147 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVL----RGDSFAIIAPTGVGKTTFGLAMSLFLAKK---GKRCYIILPTTLLVIQVAEKISSLAEK 147 (1171)
T ss_pred cCCCCcHHHHHHHHHHh----CCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEeCHHHHHHHHHHHHHHHHHh
Confidence 45678999999887665 67788888999999997544433333222 3459999995 6778999999999753
Q ss_pred --ce---EEEEEcChh
Q psy14604 180 --FY---VVTYVGDKD 190 (209)
Q Consensus 180 --l~---v~~y~G~~~ 190 (209)
+. +..|+|...
T Consensus 148 ~~i~~~~i~~~~Gg~~ 163 (1171)
T TIGR01054 148 AGVGTVNIGAYHSRLP 163 (1171)
T ss_pred cCCceeeeeeecCCCC
Confidence 23 335777643
No 62
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=97.15 E-value=0.0027 Score=60.88 Aligned_cols=74 Identities=20% Similarity=0.143 Sum_probs=53.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCceE
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYV 182 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l~v 182 (209)
.++|+|.+++.-+. .+..+++...+|.|||+..+.. .+.. .+.+|||+|. +|+.+|...+... .+.+
T Consensus 25 ~~r~~Q~~ai~~il----~g~dvlv~apTGsGKTl~y~lp--al~~----~g~tlVisPl~sL~~dqv~~l~~~--gi~~ 92 (607)
T PRK11057 25 QFRPGQQEIIDAVL----SGRDCLVVMPTGGGKSLCYQIP--ALVL----DGLTLVVSPLISLMKDQVDQLLAN--GVAA 92 (607)
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHH--HHHc----CCCEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 58899999998665 6778999999999999864432 2222 2358999995 6677788888765 3455
Q ss_pred EEEEcCh
Q psy14604 183 VTYVGDK 189 (209)
Q Consensus 183 ~~y~G~~ 189 (209)
..+++..
T Consensus 93 ~~~~s~~ 99 (607)
T PRK11057 93 ACLNSTQ 99 (607)
T ss_pred EEEcCCC
Confidence 5555543
No 63
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.14 E-value=0.0032 Score=62.62 Aligned_cols=87 Identities=11% Similarity=0.122 Sum_probs=63.5
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHH-HHHHHh--
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWE-REFETW-- 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~-~E~~~~-- 176 (209)
.++..||+|.+.+..+...+..+..+++-..+|.|||+..|..+..... ...+++|.+|. .|..||. +++...
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~ 318 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQLLEKDIPLLNE 318 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 5678999999998888887777777777789999999987665443322 23479999995 5578864 455443
Q ss_pred -CC-CceEEEEEcChh
Q psy14604 177 -AP-DFYVVTYVGDKD 190 (209)
Q Consensus 177 -~~-~l~v~~y~G~~~ 190 (209)
++ ++++++..|...
T Consensus 319 ~~~~~~~~~~~kG~~~ 334 (850)
T TIGR01407 319 ILNFKINAALIKGKSN 334 (850)
T ss_pred HcCCCceEEEEEcchh
Confidence 33 588888888764
No 64
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0022 Score=60.21 Aligned_cols=68 Identities=24% Similarity=0.241 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHhhcCCCc-eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccHHHHHHHHHHhCCCc
Q psy14604 107 AYQLEGINWLRYSWGQNID-TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDF 180 (209)
Q Consensus 107 ~~Q~~gv~~l~~~~~~~~g-~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~~qW~~E~~~~~~~l 180 (209)
.-|-+|+.-|......+.. -.|---+|.|||.++..+|..+ .+|+||++| .+|..|-..||..|+|+=
T Consensus 15 GDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~------~rPtLV~AhNKTLAaQLy~Efk~fFP~N 84 (663)
T COG0556 15 GDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKV------QRPTLVLAHNKTLAAQLYSEFKEFFPEN 84 (663)
T ss_pred CCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHh------CCCeEEEecchhHHHHHHHHHHHhCcCc
Confidence 3488898888776666553 4556678999999999888754 568999999 688899999999999863
No 65
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=97.10 E-value=0.0027 Score=60.57 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=56.5
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCceE
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYV 182 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l~v 182 (209)
.++|+|.+++.-+. .+...++...+|.|||+..+.. ++.. .+.+|||+|. +|+.++...+... .+.+
T Consensus 13 ~fr~~Q~~~i~~il----~g~dvlv~~PTG~GKTl~y~lp--al~~----~g~~lVisPl~sL~~dq~~~l~~~--gi~~ 80 (591)
T TIGR01389 13 DFRPGQEEIISHVL----DGRDVLVVMPTGGGKSLCYQVP--ALLL----KGLTVVISPLISLMKDQVDQLRAA--GVAA 80 (591)
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCccHhHHHHHH--HHHc----CCcEEEEcCCHHHHHHHHHHHHHc--CCcE
Confidence 58999999998665 6778999999999999976533 2322 2458999995 6778899888875 4667
Q ss_pred EEEEcChh
Q psy14604 183 VTYVGDKD 190 (209)
Q Consensus 183 ~~y~G~~~ 190 (209)
..++++..
T Consensus 81 ~~~~s~~~ 88 (591)
T TIGR01389 81 AYLNSTLS 88 (591)
T ss_pred EEEeCCCC
Confidence 77776643
No 66
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=96.92 E-value=0.0051 Score=61.30 Aligned_cols=86 Identities=16% Similarity=0.237 Sum_probs=66.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHH-HHHHHHHhC---C
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN-WEREFETWA---P 178 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~q-W~~E~~~~~---~ 178 (209)
..|+.||.++++.+. .+...|+...||.|||..-+-.|...+...... ..|+|-|.-.|.| =.+.|.+|. |
T Consensus 69 ~~lY~HQ~~A~~~~~----~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~rl~~~~~~~~ 143 (851)
T COG1205 69 ERLYSHQVDALRLIR----EGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAERLRELISDLP 143 (851)
T ss_pred ccccHHHHHHHHHHH----CCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHHHHHHHHhCC
Confidence 449999999998887 788999999999999998776665555544333 5899999766655 667788885 4
Q ss_pred -CceEEEEEcChhHHH
Q psy14604 179 -DFYVVTYVGDKDCRI 193 (209)
Q Consensus 179 -~l~v~~y~G~~~~r~ 193 (209)
.+++.+|+|+.....
T Consensus 144 ~~v~~~~y~Gdt~~~~ 159 (851)
T COG1205 144 GKVTFGRYTGDTPPEE 159 (851)
T ss_pred CcceeeeecCCCChHH
Confidence 688999999975543
No 67
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=96.88 E-value=0.004 Score=61.73 Aligned_cols=91 Identities=14% Similarity=0.076 Sum_probs=60.7
Q ss_pred CCCCchHHHHHHHHHHHhhcCCC-ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC-
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNI-DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP- 178 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~-g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~- 178 (209)
++.++|||.+.+.-+. .+. -.++.-.+|.|||...++++..+.........++++||. .|+.|=.+++.+|..
T Consensus 13 G~~PtpiQ~~~i~~il----~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~ 88 (844)
T TIGR02621 13 GYSPFPWQLSLAERFV----AGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGER 88 (844)
T ss_pred CCCCCHHHHHHHHHHH----cCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHH
Confidence 4558999999998654 444 356668999999986665655443222222233446684 677889999988863
Q ss_pred ------------------------CceEEEEEcChhHHHHHh
Q psy14604 179 ------------------------DFYVVTYVGDKDCRIVLR 196 (209)
Q Consensus 179 ------------------------~l~v~~y~G~~~~r~~i~ 196 (209)
.+++.+++|.......+.
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~ 130 (844)
T TIGR02621 89 LPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWM 130 (844)
T ss_pred hcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHH
Confidence 367787788865544443
No 68
>PRK14701 reverse gyrase; Provisional
Probab=96.84 E-value=0.0068 Score=64.06 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=60.9
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC-
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP- 178 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~- 178 (209)
++..+.+.|..++..+. .+...++...+|.|||...+ +.++.... ....+|||+|. .|+.|..+.|..++.
T Consensus 76 ~G~~pt~iQ~~~i~~il----~G~d~li~APTGsGKTl~~~--~~al~~~~-~g~~aLVl~PTreLa~Qi~~~l~~l~~~ 148 (1638)
T PRK14701 76 TGFEFWSIQKTWAKRIL----RGKSFSIVAPTGMGKSTFGA--FIALFLAL-KGKKCYIILPTTLLVKQTVEKIESFCEK 148 (1638)
T ss_pred hCCCCCHHHHHHHHHHH----cCCCEEEEEcCCCCHHHHHH--HHHHHHHh-cCCeEEEEECHHHHHHHHHHHHHHHHhh
Confidence 45678999999987766 67788999999999998322 22222211 12358999995 677899999999863
Q ss_pred ---CceEEEEEcChhHH
Q psy14604 179 ---DFYVVTYVGDKDCR 192 (209)
Q Consensus 179 ---~l~v~~y~G~~~~r 192 (209)
++.+..|+|+....
T Consensus 149 ~~~~v~v~~~~g~~s~~ 165 (1638)
T PRK14701 149 ANLDVRLVYYHSNLRKK 165 (1638)
T ss_pred cCCceeEEEEeCCCCHH
Confidence 45677788876543
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=96.81 E-value=0.0067 Score=54.41 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhcCCC--ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC------C
Q psy14604 108 YQLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA------P 178 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~--g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~------~ 178 (209)
||.++++-+. .+. ..+++-.+|.|||..++..+.. . ..++|+|+|. +|+.+|.+.+..++ .
T Consensus 1 hQ~~~~~~~~----~~~~~~~~i~apTGsGKT~~~~~~~l~---~---~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~ 70 (357)
T TIGR03158 1 HQVATFEALQ----SKDADIIFNTAPTGAGKTLAWLTPLLH---G---ENDTIALYPTNALIEDQTEAIKEFVDVFKPER 70 (357)
T ss_pred CHHHHHHHHH----cCCCCEEEEECCCCCCHHHHHHHHHHH---c---CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCC
Confidence 7888887665 333 3678999999999976654432 1 2358999995 67788888888876 3
Q ss_pred CceEEEEEcC
Q psy14604 179 DFYVVTYVGD 188 (209)
Q Consensus 179 ~l~v~~y~G~ 188 (209)
...+..+.|+
T Consensus 71 ~~~v~~~~g~ 80 (357)
T TIGR03158 71 DVNLLHVSKA 80 (357)
T ss_pred CceEEEecCC
Confidence 5677788886
No 70
>COG4889 Predicted helicase [General function prediction only]
Probab=96.71 E-value=0.0071 Score=59.97 Aligned_cols=82 Identities=21% Similarity=0.209 Sum_probs=59.2
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccHHHHHHHHHHh-CCC
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETW-APD 179 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~~qW~~E~~~~-~~~ 179 (209)
...|||||..+++-...-+..+..|=|-+..|.|||.++|-+.-++.. ..+|.++| -+|+.|--+|...= .-+
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~ 233 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELD 233 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCcc
Confidence 357999999999988888888888888888999999999988766544 34899999 47888754443221 124
Q ss_pred ceEEEEEcC
Q psy14604 180 FYVVTYVGD 188 (209)
Q Consensus 180 l~v~~y~G~ 188 (209)
++.+..+.+
T Consensus 234 ~~a~aVcSD 242 (1518)
T COG4889 234 FRASAVCSD 242 (1518)
T ss_pred ceeEEEecC
Confidence 454444443
No 71
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.70 E-value=0.012 Score=58.73 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=58.2
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHH---HHHHHHHhCCCc
Q psy14604 105 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIIN---WEREFETWAPDF 180 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~q---W~~E~~~~~~~l 180 (209)
|+|||.+.+.-+. .+.|.|.-..+|.|||+..+..++.....+ .+++||+|. .|+.| |...+.+|+ ++
T Consensus 93 ~tp~qvQ~I~~i~----l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g---~~v~IVTpTrELA~Qdae~m~~L~k~l-GL 164 (970)
T PRK12899 93 MVPYDVQILGAIA----MHKGFITEMQTGEGKTLTAVMPLYLNALTG---KPVHLVTVNDYLAQRDCEWVGSVLRWL-GL 164 (970)
T ss_pred CChHHHHHhhhhh----cCCCeEEEeCCCCChHHHHHHHHHHHHhhc---CCeEEEeCCHHHHHHHHHHHHHHHhhc-CC
Confidence 7899999887665 566778888999999998776554332222 357888884 44444 777787777 68
Q ss_pred eEEEEEcChhHHHHH
Q psy14604 181 YVVTYVGDKDCRIVL 195 (209)
Q Consensus 181 ~v~~y~G~~~~r~~i 195 (209)
+|.++.|+.......
T Consensus 165 sV~~i~GG~~~~eq~ 179 (970)
T PRK12899 165 TTGVLVSGSPLEKRK 179 (970)
T ss_pred eEEEEeCCCCHHHHH
Confidence 888877765544433
No 72
>KOG0350|consensus
Probab=96.64 E-value=0.0077 Score=56.25 Aligned_cols=95 Identities=17% Similarity=0.121 Sum_probs=68.3
Q ss_pred CCCchHHHHHHHHHHHhhcC-----CCceEEEcCCCCchHHH-HHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHH
Q psy14604 103 MQLHAYQLEGINWLRYSWGQ-----NIDTILADEMGLGKTIQ-TITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFET 175 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~-----~~g~iLaD~mGLGKT~q-~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~ 175 (209)
..++|-|..-+-|+...... .+..+++..+|.|||+. +|-++..+....-.+-..|||+|. .|+.|=..+|.+
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 45889999888898654442 22346688999999987 344444444432333468999995 567889999999
Q ss_pred hCC--CceEEEEEcChhHHHHHhh
Q psy14604 176 WAP--DFYVVTYVGDKDCRIVLRD 197 (209)
Q Consensus 176 ~~~--~l~v~~y~G~~~~r~~i~~ 197 (209)
|++ .+.|+.+.|-.+-+...++
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~q 261 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQ 261 (620)
T ss_pred hccCCceEEEecccccchHHHHHH
Confidence 984 6888999998877766655
No 73
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.57 E-value=0.0074 Score=49.10 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=44.7
Q ss_pred CchHHHHHHHHHHHhhcCCCc-eEEEcCCCCchHHHHHHHHHHHH-----hhCCCCCcEEEEeCc-ccHHHHHHHHHH
Q psy14604 105 LHAYQLEGINWLRYSWGQNID-TILADEMGLGKTIQTITFLYSLF-----KEGHCKGPFLVSAPL-STIINWEREFET 175 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g-~iLaD~mGLGKT~q~ia~l~~~~-----~~~~~~~~~LIV~P~-sl~~qW~~E~~~ 175 (209)
|-+.|.++|..+. .... .++.-..|.|||-+..+++..+. .......++||+||. ..+.+=...+.+
T Consensus 2 ln~~Q~~Ai~~~~----~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSAL----SSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHC----TSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH----cCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 6688999997554 4454 88888999999987777777663 224456689999995 445665556555
No 74
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.50 E-value=0.0094 Score=59.84 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=33.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI 166 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~ 166 (209)
...+.+++|.|||.+++.+|+.++..... ..+|||||...+
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~~~-~~fii~vp~~aI 101 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKYGL-FKFIIVVPTPAI 101 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHcCC-cEEEEEeCCHHH
Confidence 45778999999999999999999877544 459999997443
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=96.49 E-value=0.021 Score=56.48 Aligned_cols=80 Identities=21% Similarity=0.083 Sum_probs=52.7
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHH---HHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIIN---WEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~q---W~~E~~~~ 176 (209)
++..+++.|..| .+. .+.|.|....+|-|||+.++..++..... ...++||+|.. |..| |...+-.|
T Consensus 75 ~g~~p~~vQl~~--~~~----l~~G~Iaem~TGeGKTL~a~lp~~l~al~---G~~v~VvTpt~~LA~qd~e~~~~l~~~ 145 (790)
T PRK09200 75 LGMRPYDVQLIG--ALV----LHEGNIAEMQTGEGKTLTATMPLYLNALE---GKGVHLITVNDYLAKRDAEEMGQVYEF 145 (790)
T ss_pred hCCCCchHHHHh--HHH----HcCCceeeecCCCcchHHHHHHHHHHHHc---CCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 345555556555 343 23456889999999999876554322222 33589999964 4444 77777777
Q ss_pred CCCceEEEEEcChh
Q psy14604 177 APDFYVVTYVGDKD 190 (209)
Q Consensus 177 ~~~l~v~~y~G~~~ 190 (209)
+ .+.|.++.|...
T Consensus 146 l-Gl~v~~i~g~~~ 158 (790)
T PRK09200 146 L-GLTVGLNFSDID 158 (790)
T ss_pred c-CCeEEEEeCCCC
Confidence 6 789998888754
No 76
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=96.47 E-value=0.0098 Score=52.68 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=47.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccHHHHHHHHHHhCCCceEEEEEcChh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFYVVTYVGDKD 190 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~~qW~~E~~~~~~~l~v~~y~G~~~ 190 (209)
.++...+|.|||..++.++....... ....+|+|+| .+++.|+.+.+..++.. ++..++|...
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~ 65 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSS 65 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHH
Confidence 46788999999999988877665433 3446899999 57788999999998744 5666666543
No 77
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.47 E-value=0.028 Score=49.09 Aligned_cols=74 Identities=18% Similarity=0.116 Sum_probs=51.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCC---CCcEEEEeCc-ccHHHHHHHHHHh
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC---KGPFLVSAPL-STIINWEREFETW 176 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~---~~~~LIV~P~-sl~~qW~~E~~~~ 176 (209)
+..||.|.+.++-+...+..+..+|+-..+|.|||+..|..+......... ..+++++++. +++.+=..++.+.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 456999999888888888888889999999999999988876543333222 1246666664 3344545556554
No 78
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.47 E-value=0.028 Score=49.09 Aligned_cols=74 Identities=18% Similarity=0.116 Sum_probs=51.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCC---CCcEEEEeCc-ccHHHHHHHHHHh
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC---KGPFLVSAPL-STIINWEREFETW 176 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~---~~~~LIV~P~-sl~~qW~~E~~~~ 176 (209)
+..||.|.+.++-+...+..+..+|+-..+|.|||+..|..+......... ..+++++++. +++.+=..++.+.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 456999999888888888888889999999999999988876543333222 1246666664 3344545556554
No 79
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.46 E-value=0.021 Score=55.38 Aligned_cols=76 Identities=22% Similarity=0.194 Sum_probs=57.1
Q ss_pred CCchHHHHHHHHHHHhhcCCC-ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCce
Q psy14604 104 QLHAYQLEGINWLRYSWGQNI-DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFY 181 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~-g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l~ 181 (209)
.+--.|..++.-|...+..+. .-+|.--.|.|||+++..++..+ .+|+|||||. .++.||.+||..|+|+-.
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~------~~p~Lvi~~n~~~A~ql~~el~~f~p~~~ 82 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQV------NRPTLVIAHNKTLAAQLYNEFKEFFPENA 82 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHhCCCCe
Confidence 345679889888877765553 33566678999999988776542 4689999995 667899999999998744
Q ss_pred EEEE
Q psy14604 182 VVTY 185 (209)
Q Consensus 182 v~~y 185 (209)
|..|
T Consensus 83 V~~f 86 (655)
T TIGR00631 83 VEYF 86 (655)
T ss_pred EEEE
Confidence 5555
No 80
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.03 Score=52.82 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=63.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh-CCCC-CcEEEEeCc-ccHHHHHHHHHHhCC--
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-GHCK-GPFLVSAPL-STIINWEREFETWAP-- 178 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~-~~~~-~~~LIV~P~-sl~~qW~~E~~~~~~-- 178 (209)
.+-|.|..++--+. .+...|....+|.|||..-+.-+...+.. .... .+.||++|. .|+.|=.+++..|..
T Consensus 51 ~pt~IQ~~~IP~~l----~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 51 EPTPIQLAAIPLIL----AGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 46789999987665 66788888999999987644433333332 1112 228999995 677889999999863
Q ss_pred -CceEEEEEcChhHHHHHhh
Q psy14604 179 -DFYVVTYVGDKDCRIVLRD 197 (209)
Q Consensus 179 -~l~v~~y~G~~~~r~~i~~ 197 (209)
.++++.++|.......+..
T Consensus 127 ~~~~~~~i~GG~~~~~q~~~ 146 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQIEA 146 (513)
T ss_pred CCccEEEEECCCCHHHHHHH
Confidence 6788888888766655543
No 81
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=96.36 E-value=0.013 Score=56.38 Aligned_cols=90 Identities=16% Similarity=0.237 Sum_probs=68.5
Q ss_pred ccCCCCchHHHHHHHHHHHhhcCCCc--eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH-HHHHHHHHHh
Q psy14604 100 DTGMQLHAYQLEGINWLRYSWGQNID--TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFETW 176 (209)
Q Consensus 100 ~~~~~L~~~Q~~gv~~l~~~~~~~~g--~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~-~qW~~E~~~~ 176 (209)
.+.+.|-..|...++-+..-...... =+|--|+|.|||+.++..++.....+. .+.+.+|..++ .|=.+.|.+|
T Consensus 258 ~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~---Q~ALMAPTEILA~QH~~~~~~~ 334 (677)
T COG1200 258 ALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY---QAALMAPTEILAEQHYESLRKW 334 (677)
T ss_pred hCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC---eeEEeccHHHHHHHHHHHHHHH
Confidence 35578999999999877544444432 367778999999998888777766643 47888998765 7899999999
Q ss_pred CC--CceEEEEEcChhHH
Q psy14604 177 AP--DFYVVTYVGDKDCR 192 (209)
Q Consensus 177 ~~--~l~v~~y~G~~~~r 192 (209)
++ ++.|...+|+-+..
T Consensus 335 l~~~~i~V~lLtG~~kgk 352 (677)
T COG1200 335 LEPLGIRVALLTGSLKGK 352 (677)
T ss_pred hhhcCCeEEEeecccchh
Confidence 85 68888899987544
No 82
>KOG0330|consensus
Probab=96.33 E-value=0.026 Score=51.41 Aligned_cols=87 Identities=25% Similarity=0.186 Sum_probs=65.5
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHH-HHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC--CC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQT-ITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA--PD 179 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~-ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~--~~ 179 (209)
.+-+-|.+++-.+. .+..+|.+.++|.|||..- |-++..++.+... --.||++|. .|..|-...|+.+. ..
T Consensus 83 ~PT~IQ~~aiP~~L----~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~-~~~lVLtPtRELA~QI~e~fe~Lg~~ig 157 (476)
T KOG0330|consen 83 KPTKIQSEAIPVAL----GGRDVIGLAETGSGKTGAFALPILQRLLQEPKL-FFALVLTPTRELAQQIAEQFEALGSGIG 157 (476)
T ss_pred CCchhhhhhcchhh----CCCcEEEEeccCCCchhhhHHHHHHHHHcCCCC-ceEEEecCcHHHHHHHHHHHHHhccccC
Confidence 35567888887666 7888999999999999874 3445556554433 347999995 56778888899985 58
Q ss_pred ceEEEEEcChhHHHHH
Q psy14604 180 FYVVTYVGDKDCRIVL 195 (209)
Q Consensus 180 l~v~~y~G~~~~r~~i 195 (209)
+.|.++.|..+-....
T Consensus 158 lr~~~lvGG~~m~~q~ 173 (476)
T KOG0330|consen 158 LRVAVLVGGMDMMLQA 173 (476)
T ss_pred eEEEEEecCchHHHHH
Confidence 9999999998766443
No 83
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.23 E-value=0.029 Score=54.27 Aligned_cols=80 Identities=19% Similarity=0.122 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC-----CCceE
Q psy14604 109 QLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA-----PDFYV 182 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~-----~~l~v 182 (209)
|.+.+.++...+..+...++--.+|.|||+..+..+....... ...++||++|. .|..|+.+++..+. .++++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 7788888888887777777888999999998776654433221 23579999995 66788888887665 35777
Q ss_pred EEEEcCh
Q psy14604 183 VTYVGDK 189 (209)
Q Consensus 183 ~~y~G~~ 189 (209)
++..|..
T Consensus 81 ~~lkGr~ 87 (636)
T TIGR03117 81 GFFPGSQ 87 (636)
T ss_pred EEEECCc
Confidence 7777755
No 84
>PRK09694 helicase Cas3; Provisional
Probab=96.04 E-value=0.03 Score=56.09 Aligned_cols=84 Identities=19% Similarity=0.194 Sum_probs=57.7
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc-HHHHHHHHHHh----
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IINWEREFETW---- 176 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl-~~qW~~E~~~~---- 176 (209)
+..++|+|.....-. ...+-.||-..||.|||-.++.++..+...+.. ..+++.+|... ..+-...+..|
T Consensus 284 ~~~p~p~Q~~~~~~~----~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~-~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 284 GYQPRQLQTLVDALP----LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLA-DSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCCChHHHHHHHhhc----cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCC-CeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 457899998764221 233346889999999999999988776655433 34888899654 44455655543
Q ss_pred CCCceEEEEEcChh
Q psy14604 177 APDFYVVTYVGDKD 190 (209)
Q Consensus 177 ~~~l~v~~y~G~~~ 190 (209)
+++.++.+.||...
T Consensus 359 f~~~~v~L~Hg~a~ 372 (878)
T PRK09694 359 FPSPNLILAHGNSR 372 (878)
T ss_pred cCCCceEeecCcch
Confidence 45567888888764
No 85
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.01 E-value=0.021 Score=53.75 Aligned_cols=59 Identities=19% Similarity=0.123 Sum_probs=45.6
Q ss_pred EEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCceEEEEEcChh
Q psy14604 128 LADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYVVTYVGDKD 190 (209)
Q Consensus 128 LaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l~v~~y~G~~~ 190 (209)
|.-.+|.|||...+.++......+ +.+||++|. +|+.|+.+.|...+ ...+.++||...
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~g---~~vLvlvP~i~L~~Q~~~~l~~~f-~~~v~vlhs~~~ 61 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLALG---KSVLVLVPEIALTPQMIQRFKYRF-GSQVAVLHSGLS 61 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHh-CCcEEEEECCCC
Confidence 445789999999888776665543 359999995 67899999999877 457888888643
No 86
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=95.98 E-value=0.056 Score=52.44 Aligned_cols=80 Identities=19% Similarity=0.029 Sum_probs=55.5
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHH---HHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIIN---WEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~q---W~~E~~~~ 176 (209)
++..++|-|..|+--|. . |.|.-..+|-|||+.++..++..... ...++||+|.. |..| |...|-.|
T Consensus 100 lg~~p~~VQ~~~~~~ll----~--G~Iae~~TGeGKTla~~lp~~~~al~---G~~v~VvTptreLA~qdae~~~~l~~~ 170 (656)
T PRK12898 100 LGQRHFDVQLMGGLALL----S--GRLAEMQTGEGKTLTATLPAGTAALA---GLPVHVITVNDYLAERDAELMRPLYEA 170 (656)
T ss_pred hCCCCChHHHHHHHHHh----C--CCeeeeeCCCCcHHHHHHHHHHHhhc---CCeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 56777888888875443 3 33888899999999877655443322 34699999964 4444 66666666
Q ss_pred CCCceEEEEEcChh
Q psy14604 177 APDFYVVTYVGDKD 190 (209)
Q Consensus 177 ~~~l~v~~y~G~~~ 190 (209)
+ .+.|.+++|..+
T Consensus 171 l-Glsv~~i~gg~~ 183 (656)
T PRK12898 171 L-GLTVGCVVEDQS 183 (656)
T ss_pred c-CCEEEEEeCCCC
Confidence 5 788888888654
No 87
>KOG0331|consensus
Probab=95.91 E-value=0.022 Score=53.67 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=59.6
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHH-HHHHHHh----hCCCCCc-EEEEeCc-ccHHHHHHHHHHh
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTIT-FLYSLFK----EGHCKGP-FLVSAPL-STIINWEREFETW 176 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia-~l~~~~~----~~~~~~~-~LIV~P~-sl~~qW~~E~~~~ 176 (209)
.+-|-|..+.-.+. .+..+|....+|.|||+.-+- +|..+.. ..+..+| +||+||. .|..|=++++..|
T Consensus 113 ~PtpIQaq~wp~~l----~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIAL----SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceec----cCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 35666776654444 778899999999999986332 3333332 1122234 8999995 6778899999999
Q ss_pred CCCce--EEEEEcChhHHHHHhh
Q psy14604 177 APDFY--VVTYVGDKDCRIVLRD 197 (209)
Q Consensus 177 ~~~l~--v~~y~G~~~~r~~i~~ 197 (209)
...+. +++++|.......+++
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~ 211 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRD 211 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHH
Confidence 85444 6666666655554444
No 88
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=95.90 E-value=0.057 Score=55.22 Aligned_cols=74 Identities=20% Similarity=0.107 Sum_probs=50.6
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCce
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFY 181 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l~ 181 (209)
..++|+|.++|.-+. .+..+|+...+|-|||+..+-.++ .. .+.+|||+|+ +|+.+....+... .+.
T Consensus 459 ~sFRp~Q~eaI~aiL----~GrDVLVimPTGSGKSLcYQLPAL--~~----~GiTLVISPLiSLmqDQV~~L~~~--GI~ 526 (1195)
T PLN03137 459 HSFRPNQREIINATM----SGYDVFVLMPTGGGKSLTYQLPAL--IC----PGITLVISPLVSLIQDQIMNLLQA--NIP 526 (1195)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCccHHHHHHHHHH--Hc----CCcEEEEeCHHHHHHHHHHHHHhC--CCe
Confidence 468999999998665 778899999999999986433322 21 2459999996 5555455555432 455
Q ss_pred EEEEEcC
Q psy14604 182 VVTYVGD 188 (209)
Q Consensus 182 v~~y~G~ 188 (209)
+..+.|.
T Consensus 527 Aa~L~s~ 533 (1195)
T PLN03137 527 AASLSAG 533 (1195)
T ss_pred EEEEECC
Confidence 5555554
No 89
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=95.80 E-value=0.051 Score=53.34 Aligned_cols=79 Identities=18% Similarity=0.120 Sum_probs=48.4
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHH---HHHHHHHhC
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIIN---WEREFETWA 177 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~q---W~~E~~~~~ 177 (209)
+..+++-|..| .+. -+.|.|.-..+|-|||+.++..++..... ...++||+|.. |..| |...|.+++
T Consensus 54 g~~p~~vQlig--~~~----l~~G~Iaem~TGeGKTLva~lpa~l~aL~---G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 54 GMRPFDVQLIG--GIA----LHKGKIAEMKTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred CCCccchHHhh--hhh----hcCCceeeecCCCccHHHHHHHHHHHHHh---CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 34444455544 443 34556777899999999765443211112 23589999964 4455 555555555
Q ss_pred CCceEEEEEcChh
Q psy14604 178 PDFYVVTYVGDKD 190 (209)
Q Consensus 178 ~~l~v~~y~G~~~ 190 (209)
.++|.+.+|...
T Consensus 125 -GLsv~~i~g~~~ 136 (745)
T TIGR00963 125 -GLSVGLILSGMS 136 (745)
T ss_pred -CCeEEEEeCCCC
Confidence 688888887643
No 90
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.75 E-value=0.09 Score=51.04 Aligned_cols=78 Identities=21% Similarity=0.156 Sum_probs=59.0
Q ss_pred CCCCchHHHHHHHHHHHhhcCCC-ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCC
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNI-DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPD 179 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~-g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~ 179 (209)
.+.|..+|..++.-+...+..+. ..++.--.|.|||+.+.+++.. ..+|+|||||. ..+.+|.++|..|+|+
T Consensus 10 ~~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~l~~~------~~r~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 10 PYKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMANVIAR------LQRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred CCCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHHHHHH------hCCCEEEEECCHHHHHHHHHHHHHhcCC
Confidence 36788999999987777665543 3456667899999987665433 23579999996 5678899999999987
Q ss_pred ceEEEE
Q psy14604 180 FYVVTY 185 (209)
Q Consensus 180 l~v~~y 185 (209)
-.|..|
T Consensus 84 ~~v~~f 89 (652)
T PRK05298 84 NAVEYF 89 (652)
T ss_pred CeEEEe
Confidence 656665
No 91
>KOG1802|consensus
Probab=95.72 E-value=0.053 Score=52.50 Aligned_cols=78 Identities=24% Similarity=0.365 Sum_probs=62.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc-HHHHHHHHHHhCCCce
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IINWEREFETWAPDFY 181 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl-~~qW~~E~~~~~~~l~ 181 (209)
..|-..|..||.-.. +..-.||--..|.|||++..++++.+... ..+|+||++|..+ +.|-.+.|.+- .++
T Consensus 409 pkLN~SQ~~AV~~VL----~rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~t--gLK 480 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKT--GLK 480 (935)
T ss_pred hhhchHHHHHHHHHH----cCCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhc--Cce
Confidence 346678999998776 66668999999999999999999888776 4679999999765 67888888765 488
Q ss_pred EEEEEcC
Q psy14604 182 VVTYVGD 188 (209)
Q Consensus 182 v~~y~G~ 188 (209)
|+.+..-
T Consensus 481 VvRl~ak 487 (935)
T KOG1802|consen 481 VVRLCAK 487 (935)
T ss_pred Eeeeehh
Confidence 8877543
No 92
>KOG0345|consensus
Probab=95.71 E-value=0.089 Score=49.01 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=64.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCC-CC----cEEEEeCc-ccHHHHHH---HHH
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC-KG----PFLVSAPL-STIINWER---EFE 174 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~-~~----~~LIV~P~-sl~~qW~~---E~~ 174 (209)
.+-|-|..++-.+. .+...+.-..+|.|||+.-+.-+......... .. -.|||.|. .|..|-.+ .|.
T Consensus 28 ~mTpVQa~tIPlll----~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~ 103 (567)
T KOG0345|consen 28 KMTPVQAATIPLLL----KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFL 103 (567)
T ss_pred ccCHHHHhhhHHHh----cCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHH
Confidence 46688999887776 77778888899999999776665555422111 11 36999995 45555444 444
Q ss_pred HhCCCceEEEEEcChhHHHHHhhh
Q psy14604 175 TWAPDFYVVTYVGDKDCRIVLRDH 198 (209)
Q Consensus 175 ~~~~~l~v~~y~G~~~~r~~i~~~ 198 (209)
.+++++++.+|.|+......+..+
T Consensus 104 ~~l~~l~~~l~vGG~~v~~Di~~f 127 (567)
T KOG0345|consen 104 EHLPNLNCELLVGGRSVEEDIKTF 127 (567)
T ss_pred HhhhccceEEEecCccHHHHHHHH
Confidence 456899999999998888776553
No 93
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.70 E-value=0.073 Score=52.00 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=55.6
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC--cccHHHHHHHHHH
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP--LSTIINWEREFET 175 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P--~sl~~qW~~E~~~ 175 (209)
.+||.|.+...-+...+..+..++|-..+|.|||+.+|+...+........ +-+|.|. -+-+.|=.+|+.+
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~-~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEV-RKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcccc-ccEEEEcccchHHHHHHHHHHh
Confidence 359999999999999999999999999999999999998766654432222 3455555 3457889999998
No 94
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.38 E-value=0.1 Score=50.63 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=62.6
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc-HHHHHHHHHHhCCCce
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IINWEREFETWAPDFY 181 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl-~~qW~~E~~~~~~~l~ 181 (209)
..|-+.|..+|.+.. ....-.++--..|.|||.++++++..+...+ .++||++|... +.+-.+.+... .++
T Consensus 156 ~~ln~~Q~~Av~~~l---~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g---~~VLv~a~sn~Avd~l~e~l~~~--~~~ 227 (637)
T TIGR00376 156 PNLNESQKEAVSFAL---SSKDLFLIHGPPGTGKTRTLVELIRQLVKRG---LRVLVTAPSNIAVDNLLERLALC--DQK 227 (637)
T ss_pred CCCCHHHHHHHHHHh---cCCCeEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEEcCcHHHHHHHHHHHHhC--CCc
Confidence 567889999998764 2334567788899999999999888776654 26999999765 56677777654 566
Q ss_pred EEEEEcChhHHHHHhhhce
Q psy14604 182 VVTYVGDKDCRIVLRDHDI 200 (209)
Q Consensus 182 v~~y~G~~~~r~~i~~~~~ 200 (209)
++.+....+....+..|.+
T Consensus 228 vvRlg~~~r~~~~~~~~sl 246 (637)
T TIGR00376 228 IVRLGHPARLLKSNKQHSL 246 (637)
T ss_pred EEEeCCchhcchhHHhccH
Confidence 6666555543344444443
No 95
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.28 E-value=0.06 Score=45.71 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=56.5
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhC
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWA 177 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~ 177 (209)
.++.+|+-|.+-+..|... ..+.+.++-..||-|||-..+=+++..+.++. .=+-||||..++.|=.+-+..-+
T Consensus 20 ~~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVpk~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVPKALLEQMRQMLRSRL 93 (229)
T ss_pred cCceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHHHHHHHH
Confidence 4577999999988888643 35567899999999999887777766665442 33679999999999877775543
No 96
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=95.25 E-value=0.1 Score=51.78 Aligned_cols=86 Identities=21% Similarity=0.157 Sum_probs=65.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHH-HHhhC--CC--CCcEEEEeCcccHHH-HHHHHHHh
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYS-LFKEG--HC--KGPFLVSAPLSTIIN-WEREFETW 176 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~-~~~~~--~~--~~~~LIV~P~sl~~q-W~~E~~~~ 176 (209)
..|.|+|..++.-+. .+...++...+|.|||..|+.-+.. +...+ .. .-.+|=|.|+-.+.+ =.+.+..|
T Consensus 21 ~~~t~~Q~~a~~~i~----~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIH----SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHh----CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 568999999997776 8889999999999999998765444 44442 11 124799999877766 77778877
Q ss_pred C--CCceEEEEEcChhHH
Q psy14604 177 A--PDFYVVTYVGDKDCR 192 (209)
Q Consensus 177 ~--~~l~v~~y~G~~~~r 192 (209)
. -++.|.+-||+...-
T Consensus 97 ~~~~G~~v~vRhGDT~~~ 114 (814)
T COG1201 97 LRELGIEVAVRHGDTPQS 114 (814)
T ss_pred HHHcCCccceecCCCChH
Confidence 5 478889999987544
No 97
>KOG0335|consensus
Probab=95.02 E-value=0.051 Score=50.64 Aligned_cols=92 Identities=21% Similarity=0.163 Sum_probs=65.9
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHH-HHHHhhCC---------CCCcEEEEeCc-ccHHHHH
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFL-YSLFKEGH---------CKGPFLVSAPL-STIINWE 170 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l-~~~~~~~~---------~~~~~LIV~P~-sl~~qW~ 170 (209)
...+-|+|+.++.-+. .+.+.+.+-.+|.|||..-|--+ ..++..+. .....||++|. .|+.|=.
T Consensus 94 ~~~ptpvQk~sip~i~----~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ 169 (482)
T KOG0335|consen 94 YTKPTPVQKYSIPIIS----GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIY 169 (482)
T ss_pred ccCCCcceeeccceee----cCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHH
Confidence 3457789999986554 67777888899999998655433 33333322 12347999995 6889999
Q ss_pred HHHHHhC--CCceEEEEEcChhHHHHHhh
Q psy14604 171 REFETWA--PDFYVVTYVGDKDCRIVLRD 197 (209)
Q Consensus 171 ~E~~~~~--~~l~v~~y~G~~~~r~~i~~ 197 (209)
+|..+|. ..+++++.+|..+.+..++.
T Consensus 170 nea~k~~~~s~~~~~~~ygg~~~~~q~~~ 198 (482)
T KOG0335|consen 170 NEARKFSYLSGMKSVVVYGGTDLGAQLRF 198 (482)
T ss_pred HHHHhhcccccceeeeeeCCcchhhhhhh
Confidence 9999996 57888888888666655544
No 98
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=94.90 E-value=0.13 Score=51.49 Aligned_cols=81 Identities=16% Similarity=0.065 Sum_probs=54.8
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHH---HHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIIN---WEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~q---W~~E~~~~ 176 (209)
++...++-|+-|--- -+.|-|.-..+|-|||+.+...++..... ...++||+|. .|..| |...|..|
T Consensus 79 lg~~~ydvQliGg~~------Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~---G~~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 79 LGLRHFDVQLIGGMV------LHEGNIAEMRTGEGKTLVATLPAYLNAIS---GRGVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred cCCCcchHHHhhhhh------hccCccccccCCCCchHHHHHHHHHHHhc---CCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 456667778876522 35677888899999999766544432222 2358999995 45555 77777666
Q ss_pred CCCceEEEEEcChhH
Q psy14604 177 APDFYVVTYVGDKDC 191 (209)
Q Consensus 177 ~~~l~v~~y~G~~~~ 191 (209)
+ .+.|.+++|+...
T Consensus 150 l-GLtv~~i~gg~~~ 163 (896)
T PRK13104 150 L-GLTVGVIYPDMSH 163 (896)
T ss_pred c-CceEEEEeCCCCH
Confidence 6 6888888887543
No 99
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=94.61 E-value=0.18 Score=48.51 Aligned_cols=73 Identities=14% Similarity=0.047 Sum_probs=53.5
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHHHHHHHHHh
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETW 176 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~qW~~E~~~~ 176 (209)
+..+|+.|.+.+.-+......+..+++=-.+|.|||+..|+......... ..+++|.++.. ++.|=.++...+
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~--~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE--GKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc--CCcEEEECCCHHHHHHHHHhhcch
Confidence 46789999999999988888888899999999999999888766554443 24566666654 345555554443
No 100
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.54 E-value=0.31 Score=48.66 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=58.9
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc-HHH-HHHHHHHhC--
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IIN-WEREFETWA-- 177 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl-~~q-W~~E~~~~~-- 177 (209)
++..|+-|.+..+.+...+..+.-.++--.+|.|||+.-+.-+.... ...++||+||... ..| +..++..+.
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~ 318 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQEV 318 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHHHh
Confidence 47889999998888888887776677777999999986555433211 2357999999654 455 666665543
Q ss_pred CCceEEEEEcCh
Q psy14604 178 PDFYVVTYVGDK 189 (209)
Q Consensus 178 ~~l~v~~y~G~~ 189 (209)
.++++.++.|..
T Consensus 319 ~~~~~~~~kg~~ 330 (820)
T PRK07246 319 FHIDCHSLKGPQ 330 (820)
T ss_pred cCCcEEEEECCc
Confidence 256677666655
No 101
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.52 E-value=0.18 Score=51.45 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=53.4
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCC--ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHH--HHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN--WEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~--g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~q--W~~E~~~~ 176 (209)
+.+..-|=|..+++-...-++.+. .=++|-|+|.|||=.|+=.+......+ +.+.|+||++++.| .++--++|
T Consensus 591 FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G---KQVAvLVPTTlLA~QHy~tFkeRF 667 (1139)
T COG1197 591 FPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG---KQVAVLVPTTLLAQQHYETFKERF 667 (1139)
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC---CeEEEEcccHHhHHHHHHHHHHHh
Confidence 345667889999998876666665 358888899999998886655554443 56999999998754 44444556
Q ss_pred C
Q psy14604 177 A 177 (209)
Q Consensus 177 ~ 177 (209)
.
T Consensus 668 ~ 668 (1139)
T COG1197 668 A 668 (1139)
T ss_pred c
Confidence 5
No 102
>PHA02653 RNA helicase NPH-II; Provisional
Probab=94.42 E-value=0.24 Score=48.38 Aligned_cols=89 Identities=16% Similarity=0.114 Sum_probs=58.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHH---------HHh---hCCCCCcEEEEeCc-ccHHHH
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYS---------LFK---EGHCKGPFLVSAPL-STIINW 169 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~---------~~~---~~~~~~~~LIV~P~-sl~~qW 169 (209)
.+|.+.|.+.-.-+...+..+...|+.-++|.|||.|+=-+|+. ... ......++||++|. .++.|.
T Consensus 159 ~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi 238 (675)
T PHA02653 159 IPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLH 238 (675)
T ss_pred ccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHH
Confidence 56777777666555666668889999999999999885333221 111 11123479999995 456778
Q ss_pred HHHHHHhC-----CCceEEEEEcChhH
Q psy14604 170 EREFETWA-----PDFYVVTYVGDKDC 191 (209)
Q Consensus 170 ~~E~~~~~-----~~l~v~~y~G~~~~ 191 (209)
..++.... +...+.+.+|+..+
T Consensus 239 ~~~i~~~vg~~~~~g~~v~v~~Gg~~~ 265 (675)
T PHA02653 239 SITLLKSLGFDEIDGSPISLKYGSIPD 265 (675)
T ss_pred HHHHHHHhCccccCCceEEEEECCcch
Confidence 88886533 34566666776654
No 103
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.41 E-value=0.35 Score=48.98 Aligned_cols=80 Identities=19% Similarity=0.200 Sum_probs=52.2
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC--
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA-- 177 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~-- 177 (209)
.+..|...|+--.. ... .+.+.-+-..+|+|||--.+.. +++..... +.++||+|. .|+.|=.+.|.++.
T Consensus 79 ~G~~~ws~QR~Wak---R~~-rg~SFaiiAPTGvGKTTfg~~~--sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 79 TGFRPWSAQRVWAK---RLV-RGKSFAIIAPTGVGKTTFGLLM--SLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred hCCCchHHHHHHHH---HHH-cCCceEEEcCCCCchhHHHHHH--HHHHHhcC-CeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 55678888887443 333 4555444447999999755443 44433322 458999996 55688999999997
Q ss_pred ---CCceEEEEEcC
Q psy14604 178 ---PDFYVVTYVGD 188 (209)
Q Consensus 178 ---~~l~v~~y~G~ 188 (209)
....++ ||+.
T Consensus 152 ~~~~~~~~~-yh~~ 164 (1187)
T COG1110 152 AGSLDVLVV-YHSA 164 (1187)
T ss_pred cCCcceeee-eccc
Confidence 233344 8987
No 104
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=94.35 E-value=0.35 Score=47.98 Aligned_cols=92 Identities=18% Similarity=0.137 Sum_probs=60.7
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH-HH---HHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-IN---WEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~-~q---W~~E~~~~ 176 (209)
++..+++-|+-|.--| +.|.|.=..+|-|||+.+...++..... ...+-||+|...| .+ |...+-.|
T Consensus 77 ~g~~~~dvQlig~l~l------~~G~iaEm~TGEGKTLvA~l~a~l~al~---G~~v~vvT~neyLA~Rd~e~~~~~~~~ 147 (796)
T PRK12906 77 LGLRPFDVQIIGGIVL------HEGNIAEMKTGEGKTLTATLPVYLNALT---GKGVHVVTVNEYLSSRDATEMGELYRW 147 (796)
T ss_pred hCCCCchhHHHHHHHH------hcCCcccccCCCCCcHHHHHHHHHHHHc---CCCeEEEeccHHHHHhhHHHHHHHHHh
Confidence 5677788898875322 4567888899999999876554433333 3457888886544 44 66666666
Q ss_pred CCCceEEEEEcC--hhHHHHHhhhceec
Q psy14604 177 APDFYVVTYVGD--KDCRIVLRDHDISW 202 (209)
Q Consensus 177 ~~~l~v~~y~G~--~~~r~~i~~~~~~~ 202 (209)
+ .+.|.+..|+ ...|..+....+-|
T Consensus 148 L-Gl~vg~i~~~~~~~~r~~~y~~dI~Y 174 (796)
T PRK12906 148 L-GLTVGLNLNSMSPDEKRAAYNCDITY 174 (796)
T ss_pred c-CCeEEEeCCCCCHHHHHHHhcCCCee
Confidence 6 7899888875 44555554444444
No 105
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=94.21 E-value=0.5 Score=46.50 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=61.0
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH-HH---HHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-IN---WEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~-~q---W~~E~~~~ 176 (209)
++...++-|+-|..-|+ .|.|.=..+|-|||+++...++..... ...+-||+|...| .+ |...+-.|
T Consensus 75 lg~r~ydvQlig~l~Ll------~G~VaEM~TGEGKTLvA~l~a~l~AL~---G~~VhvvT~NdyLA~RDae~m~~ly~~ 145 (764)
T PRK12326 75 LGLRPFDVQLLGALRLL------AGDVIEMATGEGKTLAGAIAAAGYALQ---GRRVHVITVNDYLARRDAEWMGPLYEA 145 (764)
T ss_pred cCCCcchHHHHHHHHHh------CCCcccccCCCCHHHHHHHHHHHHHHc---CCCeEEEcCCHHHHHHHHHHHHHHHHh
Confidence 56777888988875553 467777788999999887655443333 3458888996554 33 77777777
Q ss_pred CCCceEEEEEcChh--HHHHHhhhceec
Q psy14604 177 APDFYVVTYVGDKD--CRIVLRDHDISW 202 (209)
Q Consensus 177 ~~~l~v~~y~G~~~--~r~~i~~~~~~~ 202 (209)
+ .+.|.+..+..+ .|..+....+-|
T Consensus 146 L-GLsvg~i~~~~~~~err~aY~~DItY 172 (764)
T PRK12326 146 L-GLTVGWITEESTPEERRAAYACDVTY 172 (764)
T ss_pred c-CCEEEEECCCCCHHHHHHHHcCCCEE
Confidence 6 788888876543 344444444433
No 106
>PF13245 AAA_19: Part of AAA domain
Probab=93.60 E-value=0.31 Score=34.01 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=33.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhh--CCCCCcEEEEeCcccHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKE--GHCKGPFLVSAPLSTIIN 168 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~--~~~~~~~LIV~P~sl~~q 168 (209)
..-.++--..|.|||.+++..+..+... .. ...+||++|.....+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAAD 56 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHH
Confidence 3335667889999999999998888743 33 557999999765543
No 107
>KOG1131|consensus
Probab=93.13 E-value=0.35 Score=45.89 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=50.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST 165 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl 165 (209)
...+|-|..-..-+...+...+.|+|-+..|.|||+..|+++.+.....+....-||-|..++
T Consensus 15 ~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTv 77 (755)
T KOG1131|consen 15 DYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTV 77 (755)
T ss_pred cccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcc
Confidence 356788887666667778888899999999999999999998877666554444699998665
No 108
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=93.02 E-value=0.4 Score=42.38 Aligned_cols=73 Identities=22% Similarity=0.214 Sum_probs=55.5
Q ss_pred CCCchHHHHHHHHHHHhhc------CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHh
Q psy14604 103 MQLHAYQLEGINWLRYSWG------QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 176 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~------~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~ 176 (209)
..|-.-|+++|-+....+. ...|.+|+|.+|.||--|+.++|+..+..++. +++-|.+...|..-=++.+...
T Consensus 36 g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~-r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 36 GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK-RAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC-ceEEEECChhhhhHHHHHHHHh
Confidence 4577889999999877766 35578999999999999999999888777643 4455666677776655555543
No 109
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=92.92 E-value=0.75 Score=46.55 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=60.3
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHH-HHHHH---HHh
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIIN-WEREF---ETW 176 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~q-W~~E~---~~~ 176 (209)
++..||-|.+..+.+...+..+..+++=..+|.|||+.-|.-+. +.......+++|.++.. |..| +.+++ .+-
T Consensus 255 ~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~--~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~ 332 (928)
T PRK08074 255 KYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAA--YFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQKI 332 (928)
T ss_pred CCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHH--HHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHHH
Confidence 46789999999998888888777777777999999996544332 22222345677777754 4455 67664 444
Q ss_pred CC-CceEEEEEcChh
Q psy14604 177 AP-DFYVVTYVGDKD 190 (209)
Q Consensus 177 ~~-~l~v~~y~G~~~ 190 (209)
++ ++++++..|...
T Consensus 333 ~~~~~~~~~lKGr~n 347 (928)
T PRK08074 333 FPFPVEAALLKGRSH 347 (928)
T ss_pred cCCCceEEEEEcccc
Confidence 43 788888887765
No 110
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=92.74 E-value=0.61 Score=46.53 Aligned_cols=82 Identities=20% Similarity=0.120 Sum_probs=53.9
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHH---HHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIIN---WEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~q---W~~E~~~~ 176 (209)
++..+++-|+-|.--| +.|.|.-..+|-|||+.+...++.....+ ..+-||+|.. |..| |...+-.|
T Consensus 78 lg~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa~l~aL~G---~~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 78 LGMRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPAYLNALTG---KGVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred hCCCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHHHHHHHcC---CCEEEEecCHHHHHHHHHHHHHHHhh
Confidence 5667777788775322 45778888999999997665443222222 2467899964 4454 66666666
Q ss_pred CCCceEEEEEcChhHH
Q psy14604 177 APDFYVVTYVGDKDCR 192 (209)
Q Consensus 177 ~~~l~v~~y~G~~~~r 192 (209)
+ .++|.+..|+.+..
T Consensus 149 L-Glsv~~i~~~~~~~ 163 (830)
T PRK12904 149 L-GLSVGVILSGMSPE 163 (830)
T ss_pred c-CCeEEEEcCCCCHH
Confidence 6 78888888764433
No 111
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=92.73 E-value=1.7 Score=37.68 Aligned_cols=91 Identities=19% Similarity=0.038 Sum_probs=53.6
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cH---HHHHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TI---INWEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~---~qW~~E~~~~ 176 (209)
++..+++-|+-|+--| ..|-|.=..+|=|||+++..+.+.... ...++=||+... |. .+|...|-.|
T Consensus 74 ~g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a~~~AL---~G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 74 LGLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPAALNAL---QGKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp TS----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHHHHHHT---TSS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHHHHHHH---hcCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 5566777788776333 446688899999999988544333322 234577777754 44 3388888888
Q ss_pred CCCceEEEEEcCh--hHHHHHhhhcee
Q psy14604 177 APDFYVVTYVGDK--DCRIVLRDHDIS 201 (209)
Q Consensus 177 ~~~l~v~~y~G~~--~~r~~i~~~~~~ 201 (209)
+ .+.|...+++. ..|.......+.
T Consensus 145 L-Glsv~~~~~~~~~~~r~~~Y~~dI~ 170 (266)
T PF07517_consen 145 L-GLSVGIITSDMSSEERREAYAADIV 170 (266)
T ss_dssp T-T--EEEEETTTEHHHHHHHHHSSEE
T ss_pred h-hhccccCccccCHHHHHHHHhCccc
Confidence 8 78888877764 334444444433
No 112
>KOG0338|consensus
Probab=92.62 E-value=0.29 Score=46.30 Aligned_cols=83 Identities=18% Similarity=0.113 Sum_probs=48.7
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCC---CCCcEEEEeCcc-cH---HHHHHHHHHhC
Q psy14604 105 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH---CKGPFLVSAPLS-TI---INWEREFETWA 177 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~---~~~~~LIV~P~s-l~---~qW~~E~~~~~ 177 (209)
+-|-|...|--.. .+..-+-+..+|.|||..-+--++..+...+ ..-.+||+||.. |. .+-...|..|+
T Consensus 204 PTpIQ~a~IPval----lgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt 279 (691)
T KOG0338|consen 204 PTPIQVATIPVAL----LGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFT 279 (691)
T ss_pred CCchhhhcccHHh----hcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 4566766553221 2232333456899998643333332222211 122589999953 33 34566777787
Q ss_pred CCceEEEEEcChhHH
Q psy14604 178 PDFYVVTYVGDKDCR 192 (209)
Q Consensus 178 ~~l~v~~y~G~~~~r 192 (209)
++.|+++.|.-+-+
T Consensus 280 -~I~~~L~vGGL~lk 293 (691)
T KOG0338|consen 280 -DITVGLAVGGLDLK 293 (691)
T ss_pred -cceeeeeecCccHH
Confidence 79999999987766
No 113
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=92.60 E-value=0.47 Score=46.76 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=64.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh-CCCCCcEEEEeCcc-cHHHHHHHHHHhCCCc
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-GHCKGPFLVSAPLS-TIINWEREFETWAPDF 180 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~-~~~~~~~LIV~P~s-l~~qW~~E~~~~~~~l 180 (209)
...+++|..++++.......+.-.+|-.++|-|||..++......... ......++.|.|.. ++.+=.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 445889999998887666665578899999999999999988877776 33344577888854 4566888888887544
Q ss_pred eEEEE--EcChhH
Q psy14604 181 YVVTY--VGDKDC 191 (209)
Q Consensus 181 ~v~~y--~G~~~~ 191 (209)
.+..- +|....
T Consensus 274 ~~~~~~~h~~~~~ 286 (733)
T COG1203 274 SVIGKSLHSSSKE 286 (733)
T ss_pred ccccccccccccc
Confidence 44443 555443
No 114
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=92.18 E-value=1.1 Score=40.55 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=68.7
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCc
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDF 180 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l 180 (209)
..+|-|+|..+-+-+...+.+...-|+-.-.|.|||-+....|...++.+ +.+.|..|. -++.--..-|..-+++.
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G---~~vciASPRvDVclEl~~Rlk~aF~~~ 171 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG---GRVCIASPRVDVCLELYPRLKQAFSNC 171 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC---CeEEEecCcccchHHHHHHHHHhhccC
Confidence 46799999999999999999999999999999999999988888877765 447788883 34444445566656677
Q ss_pred eEEEEEcChhHH
Q psy14604 181 YVVTYVGDKDCR 192 (209)
Q Consensus 181 ~v~~y~G~~~~r 192 (209)
.+.+.||+.++-
T Consensus 172 ~I~~Lyg~S~~~ 183 (441)
T COG4098 172 DIDLLYGDSDSY 183 (441)
T ss_pred CeeeEecCCchh
Confidence 888888876554
No 115
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=92.17 E-value=0.68 Score=46.48 Aligned_cols=82 Identities=17% Similarity=-0.001 Sum_probs=55.5
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHH---HHHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STII---NWEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~---qW~~E~~~~ 176 (209)
++...++-|+-|--- -+.|-|.-..+|-|||+.++..++... .....+.||+|. .|.. .|...|..|
T Consensus 79 lgm~~ydVQliGgl~------L~~G~IaEm~TGEGKTL~a~lp~~l~a---l~g~~VhIvT~ndyLA~RD~e~m~~l~~~ 149 (908)
T PRK13107 79 FEMRHFDVQLLGGMV------LDSNRIAEMRTGEGKTLTATLPAYLNA---LTGKGVHVITVNDYLARRDAENNRPLFEF 149 (908)
T ss_pred hCCCcCchHHhcchH------hcCCccccccCCCCchHHHHHHHHHHH---hcCCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 456667778876422 356778888999999997654433222 233458999995 4443 388888888
Q ss_pred CCCceEEEEEcChhHH
Q psy14604 177 APDFYVVTYVGDKDCR 192 (209)
Q Consensus 177 ~~~l~v~~y~G~~~~r 192 (209)
+ .++|.+..+.....
T Consensus 150 l-Glsv~~i~~~~~~~ 164 (908)
T PRK13107 150 L-GLTVGINVAGLGQQ 164 (908)
T ss_pred c-CCeEEEecCCCCHH
Confidence 7 88888877765443
No 116
>KOG0952|consensus
Probab=92.12 E-value=0.41 Score=48.55 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=50.1
Q ss_pred hhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC-------CCCCcEEEEeCc-cc----HHHHHHHHHHhCCCceEEEEE
Q psy14604 119 SWGQNIDTILADEMGLGKTIQTITFLYSLFKEG-------HCKGPFLVSAPL-ST----IINWEREFETWAPDFYVVTYV 186 (209)
Q Consensus 119 ~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~-------~~~~~~LIV~P~-sl----~~qW~~E~~~~~~~l~v~~y~ 186 (209)
++.....+|++..+|.|||..++-+|+.++.+. ...-.++-|+|. +| +.+|...|.-| ++.|..++
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~--gi~v~ELT 199 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL--GISVRELT 199 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc--cceEEEec
Confidence 455677899999999999999887777776641 112368899994 33 34455555544 68899999
Q ss_pred cChh
Q psy14604 187 GDKD 190 (209)
Q Consensus 187 G~~~ 190 (209)
|+..
T Consensus 200 GD~q 203 (1230)
T KOG0952|consen 200 GDTQ 203 (1230)
T ss_pred Ccch
Confidence 9874
No 117
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=91.80 E-value=1.2 Score=44.95 Aligned_cols=91 Identities=19% Similarity=0.104 Sum_probs=56.9
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH-HH---HHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-IN---WEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~-~q---W~~E~~~~ 176 (209)
++...++-|+-|--- -+.|.|.=+-+|-|||+.+...++.... ....+-||+|...| .+ |...+-.|
T Consensus 79 lGm~~ydVQliGg~~------Lh~G~iaEM~TGEGKTLvA~l~a~l~al---~G~~VhvvT~ndyLA~RD~e~m~~l~~~ 149 (913)
T PRK13103 79 MGMRHFDVQLIGGMT------LHEGKIAEMRTGEGKTLVGTLAVYLNAL---SGKGVHVVTVNDYLARRDANWMRPLYEF 149 (913)
T ss_pred hCCCcchhHHHhhhH------hccCccccccCCCCChHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 456677778877422 3567888889999999975543332222 23458888886544 44 66666666
Q ss_pred CCCceEEEEEcCh--hHHHHHhhhcee
Q psy14604 177 APDFYVVTYVGDK--DCRIVLRDHDIS 201 (209)
Q Consensus 177 ~~~l~v~~y~G~~--~~r~~i~~~~~~ 201 (209)
+ .+.|.++.++. ..|..+....+-
T Consensus 150 l-Gl~v~~i~~~~~~~err~~Y~~dI~ 175 (913)
T PRK13103 150 L-GLSVGIVTPFQPPEEKRAAYAADIT 175 (913)
T ss_pred c-CCEEEEECCCCCHHHHHHHhcCCEE
Confidence 5 78888887764 444444333333
No 118
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.07 E-value=1.7 Score=42.96 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=66.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccHHHHHHHHHHhCCCce
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFY 181 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~~qW~~E~~~~~~~l~ 181 (209)
..|-+-|..+++-+..........+|.--+|-|||-.=+.+|...+..+ +.+||++| -++..|-.+.|..-+. .+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg-~~ 272 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG-AK 272 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC-CC
Confidence 4677889999998876553344578899999999988888888887775 45999999 5788886667766553 78
Q ss_pred EEEEEcChhHH
Q psy14604 182 VVTYVGDKDCR 192 (209)
Q Consensus 182 v~~y~G~~~~r 192 (209)
|.++|..-...
T Consensus 273 v~vlHS~Ls~~ 283 (730)
T COG1198 273 VAVLHSGLSPG 283 (730)
T ss_pred hhhhcccCChH
Confidence 88888765544
No 119
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=90.92 E-value=0.84 Score=46.51 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=53.1
Q ss_pred cccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHH
Q psy14604 99 DDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFE 174 (209)
Q Consensus 99 ~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~ 174 (209)
...++.|-++|++++.-|. ++.+.+++-.+|-|||+.+-.+++.....+. .++-..|. .|-.|=.++|.
T Consensus 114 ~~~~F~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~~~q---rviYTsPIKALsNQKyrdl~ 183 (1041)
T COG4581 114 REYPFELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALRDGQ---RVIYTSPIKALSNQKYRDLL 183 (1041)
T ss_pred HhCCCCcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHHcCC---ceEeccchhhhhhhHHHHHH
Confidence 3467889999999986664 8889999999999999999888876655542 27888894 55566555553
No 120
>PRK14873 primosome assembly protein PriA; Provisional
Probab=90.77 E-value=0.89 Score=44.41 Aligned_cols=62 Identities=13% Similarity=-0.006 Sum_probs=50.3
Q ss_pred CCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccHHHHHHHHHHhCCCceEEEEEcChhHHHHHh
Q psy14604 132 MGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAPDFYVVTYVGDKDCRIVLR 196 (209)
Q Consensus 132 mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~~qW~~E~~~~~~~l~v~~y~G~~~~r~~i~ 196 (209)
.|-|||-.-+.++...+..+ +.+||++| -++..|+.+-|...+++-.|++||+.-......+
T Consensus 169 ~GSGKTevyl~~i~~~l~~G---k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~ 231 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG---RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYR 231 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC---CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHH
Confidence 48999999999988887764 34999999 5788999999999997678999998766554443
No 121
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=89.86 E-value=0.88 Score=38.70 Aligned_cols=55 Identities=24% Similarity=0.094 Sum_probs=36.4
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC-CCCCcEEEEeCccc
Q psy14604 105 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG-HCKGPFLVSAPLST 165 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~-~~~~~~LIV~P~sl 165 (209)
|-+-|..+|++. .+.-.|.| ..|.|||.+.+.-+..+.... .....+|||++...
T Consensus 1 l~~eQ~~~i~~~-----~~~~lV~a-~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~ 56 (315)
T PF00580_consen 1 LTDEQRRIIRST-----EGPLLVNA-GAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNA 56 (315)
T ss_dssp S-HHHHHHHHS------SSEEEEEE--TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHH
T ss_pred CCHHHHHHHhCC-----CCCEEEEe-CCCCCchHHHHHHHHHhhccccCChHHheecccCHH
Confidence 345688887542 33334444 489999999998887777665 33446999998654
No 122
>KOG1803|consensus
Probab=89.39 E-value=0.78 Score=44.06 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=49.9
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc-HHHHHHHH
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IINWEREF 173 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl-~~qW~~E~ 173 (209)
+...|-+.|..++.++.+ ...-.++--..|.|||.+..-+|+.+...+ ..+||.+|..+ +.|-.+-+
T Consensus 182 ~~~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred CCccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHh
Confidence 345677899999998863 224456667899999999999998888765 45899999765 46655543
No 123
>KOG0298|consensus
Probab=89.18 E-value=0.18 Score=51.75 Aligned_cols=26 Identities=46% Similarity=0.592 Sum_probs=21.9
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
.+|.++|+||||||+.-+|++.....
T Consensus 306 ~~~t~~de~gl~k~~E~~a~~~~n~~ 331 (1394)
T KOG0298|consen 306 PGGTLADEMGLGKTVEFLAMLTSNRR 331 (1394)
T ss_pred CcchHHHHhhhHHHHHHHHHHhccCC
Confidence 36789999999999999999876543
No 124
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=88.82 E-value=2.3 Score=34.81 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=36.4
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH
Q psy14604 105 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI 166 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~ 166 (209)
|-+-|.+++..+.. ....-.+|.-..|.|||.....++. .+... ...+++++|..-.
T Consensus 2 L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~-~~~~~--g~~v~~~apT~~A 58 (196)
T PF13604_consen 2 LNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAE-ALEAA--GKRVIGLAPTNKA 58 (196)
T ss_dssp S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHH-HHHHT--T--EEEEESSHHH
T ss_pred CCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHH-HHHhC--CCeEEEECCcHHH
Confidence 56789999987742 1223466767799999986555444 43332 2469999997654
No 125
>KOG0334|consensus
Probab=88.64 E-value=1.2 Score=44.91 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=47.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHH-HHhhC---CCCCc-EEEEeCc-ccHHHHHHHHHHhC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYS-LFKEG---HCKGP-FLVSAPL-STIINWEREFETWA 177 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~-~~~~~---~~~~~-~LIV~P~-sl~~qW~~E~~~~~ 177 (209)
.+.|-|..|+--+. .+..+|---.+|.|||+.-+-.+.. ..... ...+| .||+||. .+..|-.+++.+|+
T Consensus 387 k~~~IQ~qAiP~Im----sGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~ 462 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIM----SGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFL 462 (997)
T ss_pred CCcchhhhhcchhc----cCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHH
Confidence 34555555543332 5666777788999999854332221 11111 11244 5899995 56677666666664
Q ss_pred --CCceEE-EEEcChhHH
Q psy14604 178 --PDFYVV-TYVGDKDCR 192 (209)
Q Consensus 178 --~~l~v~-~y~G~~~~r 192 (209)
.++.++ +|.|...+.
T Consensus 463 k~l~ir~v~vygg~~~~~ 480 (997)
T KOG0334|consen 463 KLLGIRVVCVYGGSGISQ 480 (997)
T ss_pred hhcCceEEEecCCccHHH
Confidence 345554 455554443
No 126
>KOG0342|consensus
Probab=88.50 E-value=1 Score=42.35 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=53.5
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC----CCCCcEEEEeCc-ccHHHHHHHHHH---h
Q psy14604 105 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG----HCKGPFLVSAPL-STIINWEREFET---W 176 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~----~~~~~~LIV~P~-sl~~qW~~E~~~---~ 176 (209)
|-+-|...+.=+. .+...+-+.-+|.|||+.-+--...+.... +..--+|||||. .|..|-..|+.. +
T Consensus 105 MT~VQ~~ti~pll----~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~ 180 (543)
T KOG0342|consen 105 MTPVQQKTIPPLL----EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKY 180 (543)
T ss_pred hhHHHHhhcCccC----CCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhh
Confidence 4455665554333 555778888899999986444333333222 111138999995 566777666555 4
Q ss_pred CCCceEEEEEcChhHHHH
Q psy14604 177 APDFYVVTYVGDKDCRIV 194 (209)
Q Consensus 177 ~~~l~v~~y~G~~~~r~~ 194 (209)
.++..|.+..|...-+..
T Consensus 181 h~~~~v~~viGG~~~~~e 198 (543)
T KOG0342|consen 181 HESITVGIVIGGNNFSVE 198 (543)
T ss_pred CCCcceEEEeCCccchHH
Confidence 567788888887765533
No 127
>KOG0329|consensus
Probab=88.41 E-value=0.66 Score=40.48 Aligned_cols=60 Identities=22% Similarity=0.322 Sum_probs=40.1
Q ss_pred EEcCCCCchHHH-HHHHHHHHHhhCCCCC--cEEEEeCc-ccHHHHHHHHHHh---CCCceEEEEEcChh
Q psy14604 128 LADEMGLGKTIQ-TITFLYSLFKEGHCKG--PFLVSAPL-STIINWEREFETW---APDFYVVTYVGDKD 190 (209)
Q Consensus 128 LaD~mGLGKT~q-~ia~l~~~~~~~~~~~--~~LIV~P~-sl~~qW~~E~~~~---~~~l~v~~y~G~~~ 190 (209)
.-.-.|+|||.. +|+.|.. -.+..+ .+||+|-. .|..|-.+|.++| .|+.+|.++.|.-.
T Consensus 84 cqaksgmgktavfvl~tlqq---iepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~ 150 (387)
T KOG0329|consen 84 CQAKSGMGKTAVFVLATLQQ---IEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLF 150 (387)
T ss_pred eecccCCCceeeeehhhhhh---cCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEccee
Confidence 333469999964 3333332 222333 47888874 6778899997776 49999999998753
No 128
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=88.02 E-value=3.1 Score=40.85 Aligned_cols=86 Identities=15% Similarity=0.113 Sum_probs=53.5
Q ss_pred CCCCchHHHHHHHHHHHhhcCC-----CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHH-HHHHHH
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQN-----IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIIN-WEREFE 174 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~-----~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~q-W~~E~~ 174 (209)
++..|+-|.+..+-+...+... .-+++=-.+|.|||+-=|.-....... ...+++|.+... |..| +.++|-
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--~~k~vVIST~T~~LQeQL~~kDlP 100 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--EKKKLVISTATVALQEQLVSKDLP 100 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHhhhhh
Confidence 3678999999988888877763 345555689999999644432211111 234455555533 3345 777754
Q ss_pred H---hC-CCceEEEEEcCh
Q psy14604 175 T---WA-PDFYVVTYVGDK 189 (209)
Q Consensus 175 ~---~~-~~l~v~~y~G~~ 189 (209)
. .+ .++++++..|-.
T Consensus 101 ~l~~~l~~~~~~~llKGr~ 119 (697)
T PRK11747 101 LLLKISGLDFKFTLAKGRG 119 (697)
T ss_pred HHHHHcCCCceEEEEcCcc
Confidence 3 33 368888877755
No 129
>PRK11054 helD DNA helicase IV; Provisional
Probab=87.31 E-value=2.5 Score=41.42 Aligned_cols=81 Identities=16% Similarity=0.050 Sum_probs=53.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCC-CCCcEEEEeCcccHHHHHHH-HHHhCC--
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH-CKGPFLVSAPLSTIINWERE-FETWAP-- 178 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~-~~~~~LIV~P~sl~~qW~~E-~~~~~~-- 178 (209)
..|-+.|.++|..- .+ ..++--..|.|||.+.++-+..+..... ....+|++|...-..+.-.| |...++
T Consensus 195 ~~L~~~Q~~av~~~-----~~-~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVNG-----ED-SLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhCC-----CC-CeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 56889999998421 23 3444445899999999999888776542 23369999998777765555 555443
Q ss_pred CceEEEEEcCh
Q psy14604 179 DFYVVTYVGDK 189 (209)
Q Consensus 179 ~l~v~~y~G~~ 189 (209)
.+.+.++|+=.
T Consensus 269 ~v~v~TFHSla 279 (684)
T PRK11054 269 DITARTFHALA 279 (684)
T ss_pred CcEEEeHHHHH
Confidence 45555555433
No 130
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=87.13 E-value=1.6 Score=36.44 Aligned_cols=54 Identities=24% Similarity=0.290 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc
Q psy14604 106 HAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS 164 (209)
Q Consensus 106 ~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s 164 (209)
-..|...++-|. ...-.++--..|.|||+-|++..+.+...+.. ..++|+-|..
T Consensus 6 ~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~-~kiii~Rp~v 59 (205)
T PF02562_consen 6 NEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEY-DKIIITRPPV 59 (205)
T ss_dssp SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS--SEEEEEE-S-
T ss_pred CHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC-cEEEEEecCC
Confidence 367998887665 44456777789999999999998877777443 4466766654
No 131
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=86.19 E-value=2.4 Score=41.04 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=41.7
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCC-CCCcEEEEeCcccH
Q psy14604 105 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH-CKGPFLVSAPLSTI 166 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~-~~~~~LIV~P~sl~ 166 (209)
+.++|++++.-.. ...-+||.-..|.|||.++..++..+..... ....+++++|..-.
T Consensus 153 ~~d~Qk~Av~~a~----~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkA 211 (615)
T PRK10875 153 EVDWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKA 211 (615)
T ss_pred CCHHHHHHHHHHh----cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHH
Confidence 4589999986544 5566888889999999998888877654321 12357888896543
No 132
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=85.90 E-value=3.1 Score=32.83 Aligned_cols=47 Identities=26% Similarity=0.306 Sum_probs=34.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHh
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 176 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~ 176 (209)
++.-+.|.|||.-++.++......+ .++++|.......+..+.+..+
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~~g---~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLARG---EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCC---CcEEEEECCCCHHHHHHHHHHc
Confidence 6778899999999999988776543 4688888766665555544443
No 133
>KOG0348|consensus
Probab=85.12 E-value=4 Score=39.08 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=44.2
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhh-----CCCCCc-EEEEeCc-ccHHHHHHHHHHhCCCceEEE---EEcCh
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKE-----GHCKGP-FLVSAPL-STIINWEREFETWAPDFYVVT---YVGDK 189 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~-----~~~~~~-~LIV~P~-sl~~qW~~E~~~~~~~l~v~~---y~G~~ 189 (209)
.+...++-..+|.|||+.-+.-|...+.. .+..++ .|||+|. .|+.|-.+-+++....+.+++ ..|..
T Consensus 173 ~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGE 250 (708)
T KOG0348|consen 173 EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGE 250 (708)
T ss_pred cCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeeccc
Confidence 46678899999999999766654443322 123333 5899995 677887777777764444333 44544
No 134
>PRK10536 hypothetical protein; Provisional
Probab=84.99 E-value=3.2 Score=36.00 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=31.0
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 105 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
.-..|...+.++. ...-.++--+.|.|||..++++....+..
T Consensus 60 ~n~~Q~~~l~al~----~~~lV~i~G~aGTGKT~La~a~a~~~l~~ 101 (262)
T PRK10536 60 RNEAQAHYLKAIE----SKQLIFATGEAGCGKTWISAAKAAEALIH 101 (262)
T ss_pred CCHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3457888877775 34456777899999999999998865433
No 135
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=84.78 E-value=3 Score=40.15 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCC--CCcEEEEeCcccH
Q psy14604 107 AYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC--KGPFLVSAPLSTI 166 (209)
Q Consensus 107 ~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~--~~~~LIV~P~sl~ 166 (209)
+.|..++.... .+.-+||.-..|.|||.++..++..+...... ...+++++|..-.
T Consensus 148 ~~Qk~A~~~al----~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkA 205 (586)
T TIGR01447 148 NWQKVAVALAL----KSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKA 205 (586)
T ss_pred HHHHHHHHHHh----hCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHH
Confidence 78998987655 45668888999999999988888776543321 1358899997544
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=83.54 E-value=6.6 Score=39.54 Aligned_cols=79 Identities=18% Similarity=0.099 Sum_probs=53.2
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccH---HHHHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STI---INWEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~---~qW~~E~~~~ 176 (209)
++..+++-|+-|.-- -+.|.|.=..+|=|||+++...++ + .......+-||++. .|. ..|...+-+|
T Consensus 73 lG~r~ydvQlig~l~------L~~G~IaEm~TGEGKTL~a~l~ay-l--~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~ 143 (870)
T CHL00122 73 LGLRHFDVQLIGGLV------LNDGKIAEMKTGEGKTLVATLPAY-L--NALTGKGVHIVTVNDYLAKRDQEWMGQIYRF 143 (870)
T ss_pred hCCCCCchHhhhhHh------hcCCccccccCCCCchHHHHHHHH-H--HHhcCCceEEEeCCHHHHHHHHHHHHHHHHH
Confidence 567777888877522 356788888999999997554332 2 11234457788884 444 3499999999
Q ss_pred CCCceEEEEEcCh
Q psy14604 177 APDFYVVTYVGDK 189 (209)
Q Consensus 177 ~~~l~v~~y~G~~ 189 (209)
+ .+.|.+..++.
T Consensus 144 L-GLsvg~i~~~~ 155 (870)
T CHL00122 144 L-GLTVGLIQEGM 155 (870)
T ss_pred c-CCceeeeCCCC
Confidence 8 68887765543
No 137
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=83.50 E-value=3.6 Score=43.76 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=39.9
Q ss_pred EcCCCCchHHHHHH-HHHHHHhhC---------CCCCcEEEEeCcccH-HHHHHHHHH-----------h---CCCceEE
Q psy14604 129 ADEMGLGKTIQTIT-FLYSLFKEG---------HCKGPFLVSAPLSTI-INWEREFET-----------W---APDFYVV 183 (209)
Q Consensus 129 aD~mGLGKT~q~ia-~l~~~~~~~---------~~~~~~LIV~P~sl~-~qW~~E~~~-----------~---~~~l~v~ 183 (209)
+-.+|.|||+.+.- +|..+.... .....+|+|+|+--+ .+=.++|+. + .++++|.
T Consensus 2 ~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~ 81 (1490)
T PRK09751 2 IAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVG 81 (1490)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEE
Confidence 35689999998765 444454331 112358999996544 333333332 1 2478999
Q ss_pred EEEcChhHHH
Q psy14604 184 TYVGDKDCRI 193 (209)
Q Consensus 184 ~y~G~~~~r~ 193 (209)
+++|+.....
T Consensus 82 vrtGDt~~~e 91 (1490)
T PRK09751 82 IRTGDTPAQE 91 (1490)
T ss_pred EEECCCCHHH
Confidence 9999865443
No 138
>KOG0340|consensus
Probab=83.37 E-value=5.1 Score=36.49 Aligned_cols=84 Identities=20% Similarity=0.138 Sum_probs=57.3
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC--CCce
Q psy14604 105 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA--PDFY 181 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~--~~l~ 181 (209)
.-|-|..+|--+. .+..||=+.-+|.|||..-.--++.-+...+..--.||+.|. .+..|-.+.|.-.. -+++
T Consensus 30 pTpiQ~~cIpkIL----eGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK 105 (442)
T KOG0340|consen 30 PTPIQQACIPKIL----EGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLK 105 (442)
T ss_pred CCchHhhhhHHHh----cccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccce
Confidence 4567888887666 788899899999999975333333333333333346999996 56677777776543 4788
Q ss_pred EEEEEcChhHH
Q psy14604 182 VVTYVGDKDCR 192 (209)
Q Consensus 182 v~~y~G~~~~r 192 (209)
+.+++|..+--
T Consensus 106 ~~vivGG~d~i 116 (442)
T KOG0340|consen 106 VSVIVGGTDMI 116 (442)
T ss_pred EEEEEccHHHh
Confidence 99988887543
No 139
>PRK07952 DNA replication protein DnaC; Validated
Probab=83.01 E-value=7.4 Score=33.22 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHhh---cC-CCceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 107 AYQLEGINWLRYSW---GQ-NIDTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 107 ~~Q~~gv~~l~~~~---~~-~~g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
+.|..++..+.... .. ..+.+|.-..|.|||..+.+++..+...
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~ 126 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR 126 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34655655544322 12 2356888899999999999998887664
No 140
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=83.00 E-value=11 Score=38.25 Aligned_cols=78 Identities=21% Similarity=0.142 Sum_probs=53.4
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccH---HHHHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STI---INWEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~---~qW~~E~~~~ 176 (209)
++...++-|+-|-- . -+.|.|.-.-+|=|||+++...++ + .......+-||.+. .|. ..|...+-+|
T Consensus 82 lG~r~ydVQliGgl--~----Lh~G~IAEM~TGEGKTL~atlpay-l--nAL~GkgVhVVTvNdYLA~RDae~m~~vy~~ 152 (939)
T PRK12902 82 LGMRHFDVQLIGGM--V----LHEGQIAEMKTGEGKTLVATLPSY-L--NALTGKGVHVVTVNDYLARRDAEWMGQVHRF 152 (939)
T ss_pred hCCCcchhHHHhhh--h----hcCCceeeecCCCChhHHHHHHHH-H--HhhcCCCeEEEeCCHHHHHhHHHHHHHHHHH
Confidence 55667777887752 2 367889899999999997543322 2 22233457777774 554 3499999999
Q ss_pred CCCceEEEEEcC
Q psy14604 177 APDFYVVTYVGD 188 (209)
Q Consensus 177 ~~~l~v~~y~G~ 188 (209)
+ .+.|.+..++
T Consensus 153 L-GLtvg~i~~~ 163 (939)
T PRK12902 153 L-GLSVGLIQQD 163 (939)
T ss_pred h-CCeEEEECCC
Confidence 8 8888887654
No 141
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=82.61 E-value=0.98 Score=45.04 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=30.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS 164 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s 164 (209)
+=+-+|+|.|||.+-+-+++.|....... .++||||.-
T Consensus 77 iDI~METGTGKTy~YlrtmfeLhk~YG~~-KFIivVPs~ 114 (985)
T COG3587 77 IDILMETGTGKTYTYLRTMFELHKKYGLF-KFIIVVPSL 114 (985)
T ss_pred eeEEEecCCCceeeHHHHHHHHHHHhCce-eEEEEeccH
Confidence 45668999999999999999987775544 499999943
No 142
>KOG0333|consensus
Probab=82.53 E-value=3.3 Score=39.53 Aligned_cols=82 Identities=26% Similarity=0.263 Sum_probs=52.1
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHH----HHHHHHHHHh----hCCCCC-cEEEEeCccc-HHHHHHHHH
Q psy14604 105 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQ----TITFLYSLFK----EGHCKG-PFLVSAPLST-IINWEREFE 174 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q----~ia~l~~~~~----~~~~~~-~~LIV~P~sl-~~qW~~E~~ 174 (209)
+-|-|..++--+. +...-|.--++|.|||.. .+..|..+-. .....+ -.+|++|+.. ..|-+.|-.
T Consensus 268 ptpIqR~aipl~l----Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~ 343 (673)
T KOG0333|consen 268 PTPIQRQAIPLGL----QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETN 343 (673)
T ss_pred CchHHHhhccchh----ccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHH
Confidence 4567777776444 667788889999999942 3333333221 011222 3688999755 566999999
Q ss_pred HhC--CCceEEEEEcChh
Q psy14604 175 TWA--PDFYVVTYVGDKD 190 (209)
Q Consensus 175 ~~~--~~l~v~~y~G~~~ 190 (209)
+|. -.+.++.+.|..+
T Consensus 344 kf~~~lg~r~vsvigg~s 361 (673)
T KOG0333|consen 344 KFGKPLGIRTVSVIGGLS 361 (673)
T ss_pred HhcccccceEEEEecccc
Confidence 986 2467777777654
No 143
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=82.07 E-value=7.3 Score=38.43 Aligned_cols=66 Identities=23% Similarity=0.111 Sum_probs=47.1
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
+..|-+-|.+++..+. .+.-.+|--..|.|||..+-+++..+...+ ...++++++|.......-.|
T Consensus 321 ~~~l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l~~i~~~~~~~~-~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 321 RKGLSEEQKQALDTAI----QHKVVILTGGPGTGKTTITRAIIELAEELG-GLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHHHHHHHHHHHcC-CCceEEEEeCchHHHHHHHH
Confidence 4678899999998664 455688889999999987766665544332 12458888998766655544
No 144
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=81.98 E-value=7.5 Score=33.27 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=38.7
Q ss_pred cCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHH
Q psy14604 121 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFE 174 (209)
Q Consensus 121 ~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~ 174 (209)
.++.+.+|--.+|.|||.-++|+...+...+ .+++++--+.++.++...+.
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g---~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNELLKAG---ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEEHHHHHHHHHHHHh
Confidence 3777888888999999999999988887432 34677766777777766443
No 145
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=81.38 E-value=5.9 Score=38.24 Aligned_cols=73 Identities=23% Similarity=0.210 Sum_probs=51.6
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCceE
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYV 182 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l~v 182 (209)
..|+-|.+.|+.+. .+..+|.-..+|-||++. ..|-+++. .+.||||.|+ +|+..=.+.+..-. +.+
T Consensus 17 ~FR~gQ~evI~~~l----~g~d~lvvmPTGgGKSlC--yQiPAll~----~G~TLVVSPLiSLM~DQV~~l~~~G--i~A 84 (590)
T COG0514 17 SFRPGQQEIIDALL----SGKDTLVVMPTGGGKSLC--YQIPALLL----EGLTLVVSPLISLMKDQVDQLEAAG--IRA 84 (590)
T ss_pred ccCCCHHHHHHHHH----cCCcEEEEccCCCCcchH--hhhHHHhc----CCCEEEECchHHHHHHHHHHHHHcC--cee
Confidence 46888999998887 778899999999999974 22334444 3579999995 67766666666553 444
Q ss_pred EEEEcC
Q psy14604 183 VTYVGD 188 (209)
Q Consensus 183 ~~y~G~ 188 (209)
...+++
T Consensus 85 ~~lnS~ 90 (590)
T COG0514 85 AYLNST 90 (590)
T ss_pred ehhhcc
Confidence 444443
No 146
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=81.22 E-value=3.6 Score=36.70 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=30.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHH
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWER 171 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~ 171 (209)
.|+--..|.|||+.++.++..+.... .....+++|+...+.+.-.
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~-~~~~~~~l~~n~~l~~~l~ 48 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSE-EGKKVLYLCGNHPLRNKLR 48 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccc-cCCceEEEEecchHHHHHH
Confidence 34556789999999999988772221 2334788888766655433
No 147
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=81.03 E-value=2.6 Score=34.01 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=23.9
Q ss_pred cCCCceEEEcCCCCchHHHHHHHHHHHHhhC
Q psy14604 121 GQNIDTILADEMGLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 121 ~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~ 151 (209)
..+.+.+|--.+|.|||.-+.|++..+...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g 75 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG 75 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC
Confidence 3566777888999999999999988877653
No 148
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=80.21 E-value=13 Score=26.81 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=24.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS 164 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s 164 (209)
+...++.-+.|.|||..+-.++..+... ..+++.+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~~~ 57 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASD 57 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC---CCCeEEEehhh
Confidence 4457788899999998776666555321 23455544433
No 149
>KOG1132|consensus
Probab=78.87 E-value=11 Score=38.04 Aligned_cols=81 Identities=14% Similarity=0.081 Sum_probs=58.9
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh-------------C-----------------
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-------------G----------------- 151 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~-------------~----------------- 151 (209)
.+++|+-|+.-+..+..++.....|+|-+.+|.|||+..|+-.++.... .
T Consensus 19 P~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~ 98 (945)
T KOG1132|consen 19 PFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSE 98 (945)
T ss_pred cCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchh
Confidence 3678999999988888888888999999999999999877654332111 0
Q ss_pred --------CCCCcEEEEeCccc--HHHHHHHHHHhCCCceE
Q psy14604 152 --------HCKGPFLVSAPLST--IINWEREFETWAPDFYV 182 (209)
Q Consensus 152 --------~~~~~~LIV~P~sl--~~qW~~E~~~~~~~l~v 182 (209)
+..-|.++.+..+- +.|=.+|+.+..-.++.
T Consensus 99 e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkm 139 (945)
T KOG1132|consen 99 EAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKM 139 (945)
T ss_pred hhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCce
Confidence 01236788888655 78888888887533333
No 150
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=78.58 E-value=5.2 Score=39.05 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=43.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh-CCCCCcEEEEeCcc-cHHHHHHHHHHhC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-GHCKGPFLVSAPLS-TIINWEREFETWA 177 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~-~~~~~~~LIV~P~s-l~~qW~~E~~~~~ 177 (209)
.|-+-|.++|.+. . +.+++--..|.|||.+.++-+..+... +.....+|+|+-.. ....-.+-+...+
T Consensus 2 ~Ln~~Q~~av~~~-----~-g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV-----T-GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC-----C-CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 3668899988532 2 334555568999999999988888764 32334578887743 3333555555543
No 151
>KOG1133|consensus
Probab=78.37 E-value=5.3 Score=39.26 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=38.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
+++++-|.+=.+-|...+..+.-||+-..+|.|||+..|+..+..+
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 6678889887777788888999999999999999999888654443
No 152
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=78.01 E-value=4.5 Score=40.56 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=38.1
Q ss_pred HhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc-HHHHHHHHH
Q psy14604 118 YSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IINWEREFE 174 (209)
Q Consensus 118 ~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl-~~qW~~E~~ 174 (209)
..+..+...|+.-++|.|||.+..-+|+.... ....+||+.|..+ +.|-.+.+.
T Consensus 12 ~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva 66 (819)
T TIGR01970 12 DALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLA 66 (819)
T ss_pred HHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHH
Confidence 33447778999999999999998877665432 2346999999655 344555553
No 153
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=77.69 E-value=8.8 Score=39.22 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=40.7
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccHHHHHHHHHHhCC
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFETWAP 178 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~~qW~~E~~~~~~ 178 (209)
.+.+|++.+..|.|||++++-+...+... .....++||+- .-|-.|-.++|..+..
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~ 328 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGK 328 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHH
Confidence 44579999999999999987766555554 22223555555 5667899999999864
No 154
>PRK04296 thymidine kinase; Provisional
Probab=77.20 E-value=4.5 Score=32.84 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=25.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
.++.-+||.|||..++.++..+...+ ..++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g---~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG---MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC---CeEEEEec
Confidence 35677899999999998887665442 35777766
No 155
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=76.80 E-value=9.1 Score=30.39 Aligned_cols=50 Identities=22% Similarity=0.128 Sum_probs=31.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhC
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWA 177 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~ 177 (209)
+.--+|-.-.|-|||-.+|--+....... ...+||+.|.-++. +|+.+..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva---~em~~aL 53 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVA---EEMYEAL 53 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHH---HHHHHHT
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHH---HHHHHHH
Confidence 33457777899999999887554433332 34699999987765 4555544
No 156
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=76.65 E-value=3.6 Score=29.48 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=28.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN 168 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~q 168 (209)
..+|.-.+|.|||..+..++..+.... ..++++.+......
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~ 44 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEE 44 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEcccc
Confidence 457778899999999988876654432 24677766554443
No 157
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=76.62 E-value=11 Score=31.08 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=36.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhh-CCCCCcEEEEeCcccHHHHHHHHHHhC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKE-GHCKGPFLVSAPLSTIINWEREFETWA 177 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~-~~~~~~~LIV~P~sl~~qW~~E~~~~~ 177 (209)
.++.-+.|.|||+-++.|++..... + .++|.|+-..-..+..+.+..+.
T Consensus 22 ~li~G~~GsGKT~l~~q~l~~~~~~~g---e~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 22 VLISGPPGSGKTTLALQFLYNGLKNFG---EKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESSS-HHHHHHHHHTTT
T ss_pred EEEEeCCCCCcHHHHHHHHHHhhhhcC---CcEEEEEecCCHHHHHHHHHHcC
Confidence 5778899999999999999776655 3 35788887777777777777663
No 158
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=75.92 E-value=5.8 Score=38.53 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=34.3
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHh---hCCCCCcEEEEeCcccHHHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFK---EGHCKGPFLVSAPLSTIINWE 170 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~---~~~~~~~~LIV~P~sl~~qW~ 170 (209)
.+.-.|+--..|.|||-.++-=++.+.. .....+|+||+.|..+..-..
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYi 276 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYI 276 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHH
Confidence 3444566778999999988765555543 344567899999987766443
No 159
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=75.92 E-value=20 Score=36.30 Aligned_cols=77 Identities=18% Similarity=0.097 Sum_probs=50.0
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccH---HHHHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTI---INWEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~---~qW~~E~~~~ 176 (209)
++...++-|+-|.--| +.|.|.=.-+|=|||+++...++.. ...+..+=||.. ..|. ..|...+-.|
T Consensus 75 lG~r~ydVQliGglvL------h~G~IAEMkTGEGKTLvAtLpayLn---AL~GkgVhVVTvNdYLA~RDae~mg~vy~f 145 (925)
T PRK12903 75 LGKRPYDVQIIGGIIL------DLGSVAEMKTGEGKTITSIAPVYLN---ALTGKGVIVSTVNEYLAERDAEEMGKVFNF 145 (925)
T ss_pred hCCCcCchHHHHHHHH------hcCCeeeecCCCCccHHHHHHHHHH---HhcCCceEEEecchhhhhhhHHHHHHHHHH
Confidence 5667777888776323 4567888899999999765332211 112233555554 5555 3499999999
Q ss_pred CCCceEEEEEc
Q psy14604 177 APDFYVVTYVG 187 (209)
Q Consensus 177 ~~~l~v~~y~G 187 (209)
+ .+.|.+...
T Consensus 146 L-GLsvG~i~~ 155 (925)
T PRK12903 146 L-GLSVGINKA 155 (925)
T ss_pred h-CCceeeeCC
Confidence 8 777777654
No 160
>PRK08116 hypothetical protein; Validated
Probab=75.10 E-value=15 Score=31.70 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=29.8
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 169 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW 169 (209)
.|.+|.-+.|.|||.-+.|++..+...+ .+++++--..++...
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~---~~v~~~~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKG---VPVIFVNFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHHHHHHH
Confidence 4578888999999999999888876652 345555444444444
No 161
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=74.99 E-value=12 Score=31.90 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 108 YQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
+...-+..+......+...+|-.+.|.|||..|.++...+ ..|++.|+
T Consensus 6 ~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 6 AVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 3334444444444467778899999999999988775422 34566553
No 162
>KOG1807|consensus
Probab=74.85 E-value=9 Score=38.26 Aligned_cols=90 Identities=16% Similarity=0.073 Sum_probs=60.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCC---CCCcEEEEeC-cccHHHHHHHHHHhCCC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH---CKGPFLVSAP-LSTIINWEREFETWAPD 179 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~---~~~~~LIV~P-~sl~~qW~~E~~~~~~~ 179 (209)
-|...|+.+..++. ...-.|+--..|.|||..++-++-+++.... ...|+||||= .+.+.|.-.-+.-. .
T Consensus 378 ildsSq~~A~qs~l----tyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~--q 451 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKL----TYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH--Q 451 (1025)
T ss_pred eecHHHHHHHHHHh----hhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc--C
Confidence 35667888887665 4445788889999999999988887776542 2348999998 46677765544432 3
Q ss_pred ceEEEEEcChhHHHHHhhhc
Q psy14604 180 FYVVTYVGDKDCRIVLRDHD 199 (209)
Q Consensus 180 l~v~~y~G~~~~r~~i~~~~ 199 (209)
-..++..|+...-.-++.+.
T Consensus 452 rpsImr~gsr~~spyLk~~n 471 (1025)
T KOG1807|consen 452 RPSIMRQGSRFFSPYLKVHN 471 (1025)
T ss_pred CceEEEeccccCCHHHHHHH
Confidence 34556666665554444443
No 163
>PRK08181 transposase; Validated
Probab=74.42 E-value=12 Score=32.43 Aligned_cols=46 Identities=15% Similarity=0.079 Sum_probs=32.6
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 105 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
+-..|..++..+......+.+.+|.-..|.|||--+.|+...+...
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 4456776665443233466778889999999999998887666554
No 164
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=73.65 E-value=7.5 Score=30.18 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=25.3
Q ss_pred HHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcE
Q psy14604 117 RYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPF 157 (209)
Q Consensus 117 ~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~ 157 (209)
...+..+.-.+|.-++|.|||.-+-+++..+-......+|+
T Consensus 16 ~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPT 56 (133)
T TIGR00150 16 AKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPT 56 (133)
T ss_pred HHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCC
Confidence 33333444456788999999998877776653333333443
No 165
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=72.95 E-value=8.1 Score=35.96 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=45.2
Q ss_pred CchHHHHHHHHHHHhhc--------CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHh
Q psy14604 105 LHAYQLEGINWLRYSWG--------QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 176 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~--------~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~ 176 (209)
...+..+.+.|+..... ...|.+|.-..|.|||+.+-|+... ...+++-|-...++..|.-|.++-
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~------~~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE------SRSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh------CCCeEEEeeCHHHhccccchHHHH
Confidence 44556667777643332 3336788999999999998887652 234566555559999999887654
No 166
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=72.89 E-value=11 Score=36.31 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=43.9
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh-CCCCCcEEEEeC-cccHHHHHHHHHHhC
Q psy14604 105 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-GHCKGPFLVSAP-LSTIINWEREFETWA 177 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~-~~~~~~~LIV~P-~sl~~qW~~E~~~~~ 177 (209)
|-|-|.++|.+- .+.+++--..|.|||-+.+.-+..+... +.....+|+|.. ......-++.+.+.+
T Consensus 2 Ln~~Q~~av~~~------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEYV------TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 567798887532 2334555568999999999988888754 323334666654 455566777776654
No 167
>KOG4284|consensus
Probab=72.71 E-value=3.7 Score=40.23 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC---CceE
Q psy14604 107 AYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP---DFYV 182 (209)
Q Consensus 107 ~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~---~l~v 182 (209)
+-|..||-... .+-.-|+-.-.|.|||+.-..+...-+......-..+||+|. .+..|-..-|.+.+| +++|
T Consensus 50 kiQaaAIP~~~----~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~c 125 (980)
T KOG4284|consen 50 KIQAAAIPAIF----SKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARC 125 (980)
T ss_pred chhhhhhhhhh----cccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcce
Confidence 45666664332 333467777789999986333322223332233347999996 455677777777765 7889
Q ss_pred EEEEcChhHHHHH
Q psy14604 183 VTYVGDKDCRIVL 195 (209)
Q Consensus 183 ~~y~G~~~~r~~i 195 (209)
.+|.|.......+
T Consensus 126 svfIGGT~~~~d~ 138 (980)
T KOG4284|consen 126 SVFIGGTAHKLDL 138 (980)
T ss_pred EEEecCchhhhhh
Confidence 9999987655443
No 168
>KOG0353|consensus
Probab=72.54 E-value=4.7 Score=37.15 Aligned_cols=54 Identities=31% Similarity=0.304 Sum_probs=37.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHH
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STII 167 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~ 167 (209)
..+|.|++++|-.. .+...+|-..+|=||.+.-- |-++.. .+-+|||||+ +|+.
T Consensus 94 kfrplq~~ain~~m----a~ed~~lil~tgggkslcyq--lpal~a----dg~alvi~plislme 148 (695)
T KOG0353|consen 94 KFRPLQLAAINATM----AGEDAFLILPTGGGKSLCYQ--LPALCA----DGFALVICPLISLME 148 (695)
T ss_pred hcChhHHHHhhhhh----ccCceEEEEeCCCccchhhh--hhHHhc----CCceEeechhHHHHH
Confidence 47899999998654 67788999999999986321 112222 2458999995 5554
No 169
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=72.48 E-value=8.7 Score=34.18 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=38.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
..++|+|......+...+..+. .-++....|+||+..+.+|...++-.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~ 53 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLAS 53 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCC
Confidence 4689999999888877665554 45778899999999999998777643
No 170
>PRK10646 ADP-binding protein; Provisional
Probab=70.65 E-value=11 Score=30.11 Aligned_cols=39 Identities=28% Similarity=0.343 Sum_probs=26.6
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
.+.--+|.-++|.|||.-+=+++..+-......+||--+
T Consensus 27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTFtl 65 (153)
T PRK10646 27 GATVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTL 65 (153)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCEee
Confidence 333346788999999999888887775444455554433
No 171
>PRK05973 replicative DNA helicase; Provisional
Probab=69.99 E-value=19 Score=30.68 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=26.9
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
.+.-.+++-..|.|||+-++.|+......+ .+++++.-
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G---e~vlyfSl 100 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSG---RTGVFFTL 100 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEEE
Confidence 333458899999999999999987765442 34555543
No 172
>PRK06835 DNA replication protein DnaC; Validated
Probab=69.94 E-value=21 Score=31.79 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=31.5
Q ss_pred CchHHHHHHH----HHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC
Q psy14604 105 LHAYQLEGIN----WLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 105 L~~~Q~~gv~----~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~ 151 (209)
.+.++..++. |+.+....+.+-+|.-.+|.|||.-+.|+...+...+
T Consensus 161 ~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 161 PRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 3445555555 4433333455677788999999999999888776653
No 173
>KOG0328|consensus
Probab=69.65 E-value=3.5 Score=36.60 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhcCCCceEEEcCCCCchHHH-HHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC--CceEE
Q psy14604 108 YQLEGINWLRYSWGQNIDTILADEMGLGKTIQ-TITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DFYVV 183 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q-~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~--~l~v~ 183 (209)
-|..++--+. .+...|.-...|.|||.+ +|+++..+-...+ .-.+||+.|. .|..|-.+-+.-... ++.+.
T Consensus 53 IQqrAi~~Il----kGrdViaQaqSGTGKTa~~si~vlq~~d~~~r-~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 53 IQQRAIPQIL----KGRDVIAQAQSGTGKTATFSISVLQSLDISVR-ETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred HHhhhhhhhh----cccceEEEecCCCCceEEEEeeeeeecccccc-eeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 4777776555 777788888899999986 4445444322211 1248999995 556677777766653 56677
Q ss_pred EEEcChhHHHHHhhhc
Q psy14604 184 TYVGDKDCRIVLRDHD 199 (209)
Q Consensus 184 ~y~G~~~~r~~i~~~~ 199 (209)
.+.|...-...|+..+
T Consensus 128 acigg~n~gedikkld 143 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKKLD 143 (400)
T ss_pred EEecCCccchhhhhhc
Confidence 7888887666666544
No 174
>PRK08939 primosomal protein DnaI; Reviewed
Probab=68.64 E-value=24 Score=31.14 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=27.5
Q ss_pred HHHHHHHhhc--CCCceEEEcCCCCchHHHHHHHHHHHHhhC
Q psy14604 112 GINWLRYSWG--QNIDTILADEMGLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 112 gv~~l~~~~~--~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~ 151 (209)
+..|+..... .+.|-+|--.+|.|||.-+.|+...+...+
T Consensus 143 ~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g 184 (306)
T PRK08939 143 ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKG 184 (306)
T ss_pred HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3556543221 234667777899999999999988877543
No 175
>PRK12377 putative replication protein; Provisional
Probab=68.59 E-value=40 Score=28.82 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=28.3
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII 167 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~ 167 (209)
.+.+|.-..|.|||-.+.|+...+...+ .+++++.-..++.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g---~~v~~i~~~~l~~ 142 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKG---RSVIVVTVPDVMS 142 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEEEHHHHHH
Confidence 4567788899999999999988877543 2344443344544
No 176
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=68.48 E-value=32 Score=35.64 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=53.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH---HHHHHHHHHhCCCc
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI---INWEREFETWAPDF 180 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~---~qW~~E~~~~~~~l 180 (209)
..++-|+-|- +. -+.|.|.=+.+|=|||+++...++.....+ .+-.||-+=..|. ..|...+-.|+ .|
T Consensus 169 ~~yDVQliGg--iv----Lh~G~IAEM~TGEGKTLvAtlp~yLnAL~G--kgVHvVTVNDYLA~RDaewmgply~fL-GL 239 (1112)
T PRK12901 169 VHYDVQLIGG--VV----LHQGKIAEMATGEGKTLVATLPVYLNALTG--NGVHVVTVNDYLAKRDSEWMGPLYEFH-GL 239 (1112)
T ss_pred cccchHHhhh--hh----hcCCceeeecCCCCchhHHHHHHHHHHHcC--CCcEEEEechhhhhccHHHHHHHHHHh-CC
Confidence 3444566553 33 567889999999999998764432222222 2334555556666 45999999998 78
Q ss_pred eEEEEEc---ChhHHHHHhh
Q psy14604 181 YVVTYVG---DKDCRIVLRD 197 (209)
Q Consensus 181 ~v~~y~G---~~~~r~~i~~ 197 (209)
.|.+... +...|.....
T Consensus 240 svg~i~~~~~~~~~rr~aY~ 259 (1112)
T PRK12901 240 SVDCIDKHQPNSEARRKAYN 259 (1112)
T ss_pred ceeecCCCCCCHHHHHHhCC
Confidence 8777643 4555554443
No 177
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=68.06 E-value=14 Score=35.93 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=54.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHH-HHHHHHHHhhCCCCCcEEEEeCcccH-HHHHHHHHHhCC--
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQT-ITFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFETWAP-- 178 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~-ia~l~~~~~~~~~~~~~LIV~P~sl~-~qW~~E~~~~~~-- 178 (209)
..|.|-|.-+|.- -+-.+..-++...++.|||+.+ +|-|..+... .+.+|.++|+..+ .|=.++|..-+.
T Consensus 215 ~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~---g~KmlfLvPLVALANQKy~dF~~rYs~L 288 (830)
T COG1202 215 EELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPRLLSG---GKKMLFLVPLVALANQKYEDFKERYSKL 288 (830)
T ss_pred ceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHHHHhC---CCeEEEEehhHHhhcchHHHHHHHhhcc
Confidence 4589999988852 2236667788889999999964 3334444433 4579999997655 556667755432
Q ss_pred CceEEEEEcChh
Q psy14604 179 DFYVVTYVGDKD 190 (209)
Q Consensus 179 ~l~v~~y~G~~~ 190 (209)
.+.+.+-.|...
T Consensus 289 glkvairVG~sr 300 (830)
T COG1202 289 GLKVAIRVGMSR 300 (830)
T ss_pred cceEEEEechhh
Confidence 566766666553
No 178
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=67.93 E-value=11 Score=30.91 Aligned_cols=57 Identities=21% Similarity=0.163 Sum_probs=35.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhCCCceEEEEE
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYV 186 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~~l~v~~y~ 186 (209)
+|.-..|.|||-++.-+.+.+... ...+.+||--.--.-=.++++.|+.-+.+-+|.
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~ 61 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYV 61 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE
T ss_pred EEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccch
Confidence 566789999999887776666555 334666665444333445666666555555543
No 179
>PF12846 AAA_10: AAA-like domain
Probab=67.68 E-value=30 Score=28.89 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=30.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
..++.-.+|.|||..+..++..+...+ ..++|+=|..-...|.+.
T Consensus 3 h~~i~G~tGsGKT~~~~~l~~~~~~~g---~~~~i~D~~g~~~~~~~~ 47 (304)
T PF12846_consen 3 HTLILGKTGSGKTTLLKNLLEQLIRRG---PRVVIFDPKGDYSPLARA 47 (304)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHcC---CCEEEEcCCchHHHHHHh
Confidence 356777899999999887777766654 347777666444444443
No 180
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=67.03 E-value=22 Score=33.11 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=19.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
.++.-..|.|||.++..+...+...
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc
Confidence 4567789999999998887666543
No 181
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=66.90 E-value=50 Score=26.72 Aligned_cols=24 Identities=21% Similarity=-0.058 Sum_probs=18.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
..+|--+.|.|||..+.++.....
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 456777899999999988765543
No 182
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=66.84 E-value=21 Score=35.79 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=37.3
Q ss_pred HhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc-HHHHHHHHHH
Q psy14604 118 YSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IINWEREFET 175 (209)
Q Consensus 118 ~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl-~~qW~~E~~~ 175 (209)
..+..+...|+.-++|.|||.+..-+++.. ....+.+||++|..+ ..|-.+.+..
T Consensus 15 ~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~---~~~~~~ilvlqPrR~aA~qia~rva~ 70 (812)
T PRK11664 15 TALKTAPQVLLKAPTGAGKSTWLPLQLLQH---GGINGKIIMLEPRRLAARNVAQRLAE 70 (812)
T ss_pred HHHHhCCCEEEEcCCCCCHHHHHHHHHHHc---CCcCCeEEEECChHHHHHHHHHHHHH
Confidence 334467779999999999999987655432 222346999999655 3556665544
No 183
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=66.18 E-value=19 Score=31.56 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 113 INWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 113 v~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
..+|..+...+...+++-.+|.|||-.+-+++..+.
T Consensus 122 ~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 122 RDVLREAVLARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 345666666777789999999999998877775553
No 184
>KOG0341|consensus
Probab=65.95 E-value=1.4 Score=40.60 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=37.2
Q ss_pred CCCCchHHH----HHHHHHHHHhh---CCCCCc-EEEEeCcc-cHHHHHHHHHHh--------CCCceEEEEEcChhHHH
Q psy14604 131 EMGLGKTIQ----TITFLYSLFKE---GHCKGP-FLVSAPLS-TIINWEREFETW--------APDFYVVTYVGDKDCRI 193 (209)
Q Consensus 131 ~mGLGKT~q----~ia~l~~~~~~---~~~~~~-~LIV~P~s-l~~qW~~E~~~~--------~~~l~v~~y~G~~~~r~ 193 (209)
-+|.|||+. +|.|.+..-.. ....+| -|||||.. |..|-..=++.| .|.++..++.|...-+.
T Consensus 215 fTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~e 294 (610)
T KOG0341|consen 215 FTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVRE 294 (610)
T ss_pred eecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHH
Confidence 469999975 33332211110 122344 49999964 444544444444 37888888888877765
Q ss_pred HH
Q psy14604 194 VL 195 (209)
Q Consensus 194 ~i 195 (209)
.+
T Consensus 295 ql 296 (610)
T KOG0341|consen 295 QL 296 (610)
T ss_pred HH
Confidence 44
No 185
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=65.87 E-value=20 Score=35.12 Aligned_cols=68 Identities=12% Similarity=0.042 Sum_probs=44.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh-CCCCCcEEEEeCcc-cHHHHHHHHHHhC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-GHCKGPFLVSAPLS-TIINWEREFETWA 177 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~-~~~~~~~LIV~P~s-l~~qW~~E~~~~~ 177 (209)
.|-|-|.++|.. ..+.+++--..|.|||-+.++-+..+... +.....+|+|+-.. ....-.+-+...+
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 4 GLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 477889998842 22345666678999999999888888764 32333477777743 3444555555554
No 186
>PRK06526 transposase; Provisional
Probab=65.72 E-value=9.7 Score=32.61 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 111 EGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 111 ~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
.+.+|+. .+.+.+|.-..|.|||..+.++...+...
T Consensus 90 ~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 90 GTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred hcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 3445664 56677888899999999999987766554
No 187
>KOG0951|consensus
Probab=65.66 E-value=40 Score=35.78 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=43.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhC-C-------CCCcEEEEeCc-ccHHHHHHHHHHhCC--CceEEEEEcCh
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEG-H-------CKGPFLVSAPL-STIINWEREFETWAP--DFYVVTYVGDK 189 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~-~-------~~~~~LIV~P~-sl~~qW~~E~~~~~~--~l~v~~y~G~~ 189 (209)
.-+|+-.+|.|||..++-.+..-...+ + ....+.-|+|. +|+.-|...|.+|.. .+.|.-.+|+.
T Consensus 327 nmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~ 402 (1674)
T KOG0951|consen 327 NMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDS 402 (1674)
T ss_pred cEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccc
Confidence 457788899999998766544433322 1 11245678885 555669999999975 45566677774
No 188
>KOG1805|consensus
Probab=65.62 E-value=24 Score=36.12 Aligned_cols=98 Identities=19% Similarity=0.171 Sum_probs=62.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHH-------------
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIIN------------- 168 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~q------------- 168 (209)
..|-.-|++|+.... ......-|+++ .|.|||-+..++|..+...+ +.+|+.|=.+ .+.|
T Consensus 668 ~~LN~dQr~A~~k~L--~aedy~LI~GM-PGTGKTTtI~~LIkiL~~~g---kkVLLtsyThsAVDNILiKL~~~~i~~l 741 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKAL--AAEDYALILGM-PGTGKTTTISLLIKILVALG---KKVLLTSYTHSAVDNILIKLKGFGIYIL 741 (1100)
T ss_pred hhcCHHHHHHHHHHH--hccchheeecC-CCCCchhhHHHHHHHHHHcC---CeEEEEehhhHHHHHHHHHHhccCccee
Confidence 356678999986443 34555677776 69999988777776665443 2233333221 1111
Q ss_pred ------------------------HHHHHHHhC--CCceEEEEEcChhHHHHHhhhceeccCcC
Q psy14604 169 ------------------------WEREFETWA--PDFYVVTYVGDKDCRIVLRDHDISWEDTA 206 (209)
Q Consensus 169 ------------------------W~~E~~~~~--~~l~v~~y~G~~~~r~~i~~~~~~~~~~~ 206 (209)
-.+++++++ +.+...++.|-...--..|+++|+..|.|
T Consensus 742 RLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEA 805 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEA 805 (1100)
T ss_pred ecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhhccccCEEEEccc
Confidence 223344665 55666778888877777788888888876
No 189
>KOG0947|consensus
Probab=65.60 E-value=25 Score=36.09 Aligned_cols=86 Identities=21% Similarity=0.200 Sum_probs=57.6
Q ss_pred CCCccccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHH-HHHHH
Q psy14604 95 PPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN-WEREF 173 (209)
Q Consensus 95 p~~~~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~q-W~~E~ 173 (209)
|.......+.|-.||++||-.|. ++.+.++|.-+-.|||+.|=..|+....++ ..++--.|.-.+.| =-++|
T Consensus 288 pe~a~~~pFelD~FQk~Ai~~le----rg~SVFVAAHTSAGKTvVAEYAialaq~h~---TR~iYTSPIKALSNQKfRDF 360 (1248)
T KOG0947|consen 288 PEMALIYPFELDTFQKEAIYHLE----RGDSVFVAAHTSAGKTVVAEYAIALAQKHM---TRTIYTSPIKALSNQKFRDF 360 (1248)
T ss_pred hhHHhhCCCCccHHHHHHHHHHH----cCCeEEEEecCCCCcchHHHHHHHHHHhhc---cceEecchhhhhccchHHHH
Confidence 33333456788999999985554 888999999999999999866554332221 23788888655554 66667
Q ss_pred HHhCCCceEEEEEcCh
Q psy14604 174 ETWAPDFYVVTYVGDK 189 (209)
Q Consensus 174 ~~~~~~l~v~~y~G~~ 189 (209)
..-+.+.. +.+|+.
T Consensus 361 k~tF~Dvg--LlTGDv 374 (1248)
T KOG0947|consen 361 KETFGDVG--LLTGDV 374 (1248)
T ss_pred HHhccccc--eeecce
Confidence 65554544 555554
No 190
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=65.19 E-value=27 Score=28.64 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=32.0
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 176 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~ 176 (209)
-+++-+.|.|||.-++.+++..... ..+++.|....-..+=.+.+..+
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCHHHHHHHHHHc
Confidence 3667789999999999888765443 24577777655555544444443
No 191
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=64.90 E-value=15 Score=29.68 Aligned_cols=40 Identities=25% Similarity=0.139 Sum_probs=24.8
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
....+++-.+|.|||....+++..+........--|+|+-
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD 77 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIID 77 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEc
Confidence 3368889999999999999999888774322232344443
No 192
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=64.74 E-value=11 Score=33.61 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=36.2
Q ss_pred CCchHHHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 104 QLHAYQLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
.++|+|......|...+..+. .-++.-..|+||+..+.+|..+++-
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC 50 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMC 50 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcC
Confidence 467888888887777766554 4567889999999999999877754
No 193
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=64.69 E-value=11 Score=33.47 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=33.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
.++|+|....+-+...-.-...-++.-..|+|||..+.+|...+.-
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 4688888887766543222224567889999999999999877764
No 194
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=64.43 E-value=29 Score=28.45 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=28.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 169 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW 169 (209)
-.+++-+.|.|||.-++.++...... ..+++.|+-.....+.
T Consensus 22 ~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~e~~~~~i 63 (229)
T TIGR03881 22 FVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTTEESRESI 63 (229)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEccCCHHHH
Confidence 35778899999999999887655443 2357777764444443
No 195
>KOG0344|consensus
Probab=64.33 E-value=13 Score=35.81 Aligned_cols=96 Identities=21% Similarity=0.289 Sum_probs=60.4
Q ss_pred CCCCCCChhhhhhhccCCCCcccc---C-CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh-C-
Q psy14604 78 PPPEKPTTDLRKKYEKQPPFLDDT---G-MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-G- 151 (209)
Q Consensus 78 ~~~~~~~~~~~~~~~~~p~~~~~~---~-~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~-~- 151 (209)
++|-.+.+++...+...+.++..+ + ....|-|..++-.+. ....++-+..+|-|||+.-+.-|...+.. .
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl----~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~ 203 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFL----EKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ 203 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhh----cccceEEeccCCCcchhhhhhHHHHHHHHhhc
Confidence 555555666555555554443321 1 235677888887665 56667888899999977554433322222 1
Q ss_pred ---CCCCcEEEEeCc-ccHHHHHHHHHHhC
Q psy14604 152 ---HCKGPFLVSAPL-STIINWEREFETWA 177 (209)
Q Consensus 152 ---~~~~~~LIV~P~-sl~~qW~~E~~~~~ 177 (209)
...-..+||.|. .|+.|=.+|+.++.
T Consensus 204 ~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 204 EKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred ccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 122257899994 67788999999886
No 196
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=62.62 E-value=34 Score=32.15 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=24.9
Q ss_pred HHHHhhcCCCceEEEcCCCCchHHHHHHHHHHH
Q psy14604 115 WLRYSWGQNIDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 115 ~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
.+...+..+...||...+|.|||..|-.+...+
T Consensus 186 ~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 186 TILKRLTIKKNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 334445577789999999999999887766554
No 197
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=62.38 E-value=24 Score=31.48 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=29.2
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 105 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
+-+.|.+ ||..+...+...|++-.+|.|||-..-+++..+.
T Consensus 129 ~~~~~~~---~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 129 MTEAQAS---VIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCHHHHH---HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4445544 4555556666778999999999998877776553
No 198
>KOG0343|consensus
Probab=62.34 E-value=17 Score=35.18 Aligned_cols=85 Identities=21% Similarity=0.229 Sum_probs=54.5
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHH-HHHHHhhCCCC---CcEEEEeCc-ccHHHHHHHHHHhC-
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITF-LYSLFKEGHCK---GPFLVSAPL-STIINWEREFETWA- 177 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~-l~~~~~~~~~~---~~~LIV~P~-sl~~qW~~E~~~~~- 177 (209)
.+..-|...|-... ++...|=|.-+|.|||+.-+-- |-.|+...... --+|||.|. .|..|--.-+.+-.
T Consensus 91 ~~teiQ~~~Ip~aL----~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMAL----QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchhc----cCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 45667888876554 5555666788999999865443 34444443221 147999995 56677666555543
Q ss_pred -CCceEEEEEcChhHH
Q psy14604 178 -PDFYVVTYVGDKDCR 192 (209)
Q Consensus 178 -~~l~v~~y~G~~~~r 192 (209)
.+|..-++.|.....
T Consensus 167 ~h~fSaGLiiGG~~~k 182 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVK 182 (758)
T ss_pred ccccccceeecCchhH
Confidence 367777888877544
No 199
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=61.45 E-value=8.8 Score=36.74 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=48.0
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHH
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWERE 172 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E 172 (209)
-.....|||.+-++-|.... -...++.-..-+|||...+.+|....... ..|+|+|.|. ..+..|..+
T Consensus 13 w~~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--P~~~l~v~Pt~~~a~~~~~~ 81 (557)
T PF05876_consen 13 WRTDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQD--PGPMLYVQPTDDAAKDFSKE 81 (557)
T ss_pred CCCCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeC--CCCEEEEEEcHHHHHHHHHH
Confidence 34678899999887664221 23456677778999998888776655543 4689999996 455667754
No 200
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=61.39 E-value=34 Score=28.50 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=29.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN 168 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~q 168 (209)
..+++-+.|.|||+.++.|++..... ..++|.|.-.....+
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~ee~~~~ 63 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVALEEHPVQ 63 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEeeCCHHH
Confidence 35778999999999999998776543 245777775443433
No 201
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.08 E-value=57 Score=30.42 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=42.2
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-c---ccHHHHHHHHHHhCCCceEEEEEcChhHHHHHh------
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-L---STIINWEREFETWAPDFYVVTYVGDKDCRIVLR------ 196 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~---sl~~qW~~E~~~~~~~l~v~~y~G~~~~r~~i~------ 196 (209)
.|.-..|.|||..+..+...+...+ ..+++|.- . ..+.||..-.+. .++.+.+......-...+.
T Consensus 245 ~LVGptGvGKTTTiaKLA~~L~~~G---kkVglI~aDt~RiaAvEQLk~yae~--lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQDYVKT--IGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcC---CcEEEEecCCcchHHHHHHHHHhhh--cCCcEEecCCHHHHHHHHHHHHhcc
Confidence 4556699999998888876665432 23555554 2 345666643332 2344443333333333342
Q ss_pred hhceeccCcCCC
Q psy14604 197 DHDISWEDTANR 208 (209)
Q Consensus 197 ~~~~~~~~~~~r 208 (209)
.+++-+.|.+-|
T Consensus 320 ~~DvVLIDTaGR 331 (436)
T PRK11889 320 RVDYILIDTAGK 331 (436)
T ss_pred CCCEEEEeCccc
Confidence 246777777654
No 202
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=60.67 E-value=34 Score=30.72 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=41.2
Q ss_pred CchHHHHHHHHHHHhhcCCC--ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHH
Q psy14604 105 LHAYQLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII 167 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~--g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~ 167 (209)
|-+-|...++++........ ...|.-.-|.|||...-+++..+... ...+++++|..+..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~---~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR---GKKVLVTAPTGIAA 63 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc---cceEEEecchHHHH
Confidence 45668888888865554333 34667788999999877776655332 34689999976654
No 203
>PF05729 NACHT: NACHT domain
Probab=60.28 E-value=18 Score=27.27 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=20.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGH 152 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~ 152 (209)
.+|.-+.|.|||..+..++..+.....
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCc
Confidence 356678899999999888877766543
No 204
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=59.91 E-value=42 Score=28.02 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=28.2
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
.+.-.++.-+.|.|||.-++.+++.....+ .+++.|+..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e 61 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQ 61 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCC
Confidence 344467788999999999999988765543 346777653
No 205
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=59.87 E-value=13 Score=30.03 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~ 151 (209)
.|.+.+.|.|||+.+++++..+...+
T Consensus 4 ~I~~t~t~vGKT~vslgL~~~l~~~g 29 (199)
T PF13500_consen 4 FITGTDTGVGKTVVSLGLARALRRRG 29 (199)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 46789999999999999998887654
No 206
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=59.85 E-value=35 Score=30.21 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=20.9
Q ss_pred EcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 129 ADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 129 aD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
.-..|.|||-++..+...+... .+.++|++-
T Consensus 120 vGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~~ 150 (318)
T PRK10416 120 VGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAAG 150 (318)
T ss_pred ECCCCCcHHHHHHHHHHHHHhc---CCeEEEEec
Confidence 4489999999888777665433 234666653
No 207
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=59.71 E-value=20 Score=30.29 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=27.3
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 112 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 112 gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
-..+|......+...+++-.+|.|||-+.-+++..+..
T Consensus 116 ~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 116 IAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp HHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred HHHHHhhccccceEEEEECCCccccchHHHHHhhhccc
Confidence 34456555555667788999999999998777655433
No 208
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=59.53 E-value=37 Score=33.69 Aligned_cols=59 Identities=14% Similarity=0.062 Sum_probs=41.3
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI 166 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~ 166 (209)
...|-+-|.+++..+. ....-.+|-...|.|||..+-+++..+... ...+++++|....
T Consensus 350 ~~~Ls~~Q~~Av~~i~---~s~~~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~~~ApTg~A 408 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVT---GSGDIAVVVGRAGTGKSTMLKAAREAWEAA---GYRVIGAALSGKA 408 (744)
T ss_pred cCCCCHHHHHHHHHHh---cCCCEEEEEecCCCCHHHHHHHHHHHHHhC---CCeEEEEeCcHHH
Confidence 3567899999997664 223456888889999998877765444332 2458888897654
No 209
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=59.47 E-value=60 Score=25.27 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=19.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
.++.-..|.|||..+..+...+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3566789999999998888766544
No 210
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=59.30 E-value=43 Score=26.39 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=36.4
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCC-------CCCcEEEEeCcccHHHHHHHHHHhC
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGH-------CKGPFLVSAPLSTIINWEREFETWA 177 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~-------~~~~~LIV~P~sl~~qW~~E~~~~~ 177 (209)
.+.-++++-..|.|||.-++.++..+..... ...++|.|....-..++.+-+..+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 4445788889999999999999887764221 2346888877665656666665544
No 211
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=59.26 E-value=23 Score=30.63 Aligned_cols=41 Identities=20% Similarity=0.168 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCC--ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~--g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|...+.+|......+. ..+|.-+.|.|||..+.++...+..
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444555555444444 5688889999999999998877653
No 212
>KOG0948|consensus
Probab=59.22 E-value=44 Score=33.59 Aligned_cols=66 Identities=15% Similarity=0.257 Sum_probs=46.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH-HHHHHHHHH
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFET 175 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~-~qW~~E~~~ 175 (209)
+.|-|||..+|.-+ .++.+.++..-+..|||+.|=-.|+.-+... ..++--.|.-.+ .|=.+||..
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k---QRVIYTSPIKALSNQKYREl~~ 194 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREK---QRVIYTSPIKALSNQKYRELLE 194 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhc---CeEEeeChhhhhcchhHHHHHH
Confidence 67899999998544 4777888888899999999866655444442 247778885444 455566543
No 213
>KOG0339|consensus
Probab=59.20 E-value=24 Score=33.92 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=27.1
Q ss_pred CCcE-EEEeCc-ccHHHHHHHHHHhC--CCceEEEEEcChh
Q psy14604 154 KGPF-LVSAPL-STIINWEREFETWA--PDFYVVTYVGDKD 190 (209)
Q Consensus 154 ~~~~-LIV~P~-sl~~qW~~E~~~~~--~~l~v~~y~G~~~ 190 (209)
.+|+ ||+||. ++..|-..|..+|. -+++++.+||...
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgs 335 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGS 335 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCc
Confidence 4565 577784 78899999999995 4777777666554
No 214
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=58.90 E-value=43 Score=28.21 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=29.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST 165 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl 165 (209)
--++.-.+|.|||+-++.|++..... ..|+|.|.-...
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~---ge~vlyvs~~e~ 62 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGARE---GEPVLYVSTEES 62 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc---CCcEEEEEecCC
Confidence 34778899999999999999888776 346787776433
No 215
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=58.53 E-value=20 Score=29.86 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=27.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhh---------CCCCCcEEEEeC
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKE---------GHCKGPFLVSAP 162 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~---------~~~~~~~LIV~P 162 (209)
-++|+-..|.|||.-++.+++++..- ....+++|+++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~ 49 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA 49 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC
Confidence 37888899999999999987765421 112346888884
No 216
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=58.19 E-value=12 Score=31.65 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=20.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
.|-+-++|.|||+.+-+++.++...
T Consensus 6 fVtGTDT~VGKTv~S~aL~~~l~~~ 30 (223)
T COG0132 6 FVTGTDTGVGKTVVSAALAQALKQQ 30 (223)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhC
Confidence 3558899999999999998877654
No 217
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=58.11 E-value=32 Score=30.55 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=24.5
Q ss_pred HHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHH
Q psy14604 114 NWLRYSWGQNIDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 114 ~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
.||..+...+...+++-.+|.|||-..-+++..+
T Consensus 139 ~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 139 EAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 3455555567778889999999997666666544
No 218
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=57.88 E-value=43 Score=27.63 Aligned_cols=49 Identities=18% Similarity=0.341 Sum_probs=32.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHh
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 176 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~ 176 (209)
-.++.-+.|.|||.-+..|++..... ..+++.|.-..-..+..+.+..+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCCCHHHHHHHHHHC
Confidence 35778899999999999998765443 34566666544445555544443
No 219
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.63 E-value=62 Score=29.64 Aligned_cols=81 Identities=16% Similarity=0.081 Sum_probs=40.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhC-CCCCcEEEEeCcc--cHHHHHHHHHHhCCCceEEEEEcC--hhHHH---HHhh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEG-HCKGPFLVSAPLS--TIINWEREFETWAPDFYVVTYVGD--KDCRI---VLRD 197 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~-~~~~~~LIV~P~s--l~~qW~~E~~~~~~~l~v~~y~G~--~~~r~---~i~~ 197 (209)
.+|.-..|.|||-++.-+...+.... .....+++|+--. ....|+ +..|+.-+.+-++... ..-.. ....
T Consensus 177 i~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv~~~~~~~~l~~~L~~~~~ 254 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPVKAIESFKDLKEEITQSKD 254 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcceEeeCcHHHHHHHHHHhCC
Confidence 35577889999988866654443221 1223455555433 223333 6667643333322222 22222 2345
Q ss_pred hceeccCcCCC
Q psy14604 198 HDISWEDTANR 208 (209)
Q Consensus 198 ~~~~~~~~~~r 208 (209)
+++-+.|.+-|
T Consensus 255 ~DlVLIDTaGr 265 (388)
T PRK12723 255 FDLVLVDTIGK 265 (388)
T ss_pred CCEEEEcCCCC
Confidence 56666666544
No 220
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=57.63 E-value=28 Score=29.09 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=29.9
Q ss_pred CCchHHHHHHHHHHHhhcCCCc-eEEEcCCCCchHHHHHHHHHH
Q psy14604 104 QLHAYQLEGINWLRYSWGQNID-TILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g-~iLaD~mGLGKT~q~ia~l~~ 146 (209)
..-+.+..+++.+......+.+ .+|.-+.|.|||..+-.++..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 3445667788777665555554 577889999999877766543
No 221
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=57.15 E-value=1.6e+02 Score=27.33 Aligned_cols=82 Identities=23% Similarity=0.204 Sum_probs=42.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhC--CCceEEEEEcChhHHHH---Hhhhce
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWA--PDFYVVTYVGDKDCRIV---LRDHDI 200 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~--~~l~v~~y~G~~~~r~~---i~~~~~ 200 (209)
-.|.-.+|.|||-+ ||=|++.+........+=||.--+=-.-=.++|..++ -++.+.+......--.. ++++++
T Consensus 206 i~LVGPTGVGKTTT-lAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ 284 (407)
T COG1419 206 IALVGPTGVGKTTT-LAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDV 284 (407)
T ss_pred EEEECCCCCcHHHH-HHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCE
Confidence 45667999999965 4544444442122233555555433333344455554 25566666555544433 344566
Q ss_pred eccCcCCC
Q psy14604 201 SWEDTANR 208 (209)
Q Consensus 201 ~~~~~~~r 208 (209)
-+.|.+=|
T Consensus 285 ILVDTaGr 292 (407)
T COG1419 285 ILVDTAGR 292 (407)
T ss_pred EEEeCCCC
Confidence 66665544
No 222
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=56.71 E-value=15 Score=28.10 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=20.8
Q ss_pred hhcCCCceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 119 SWGQNIDTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 119 ~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
....+.--+|--+||.|||.=+=+++..+-..
T Consensus 11 ~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 11 ILKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred hCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 33334334567799999999888888776333
No 223
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=56.70 E-value=24 Score=31.36 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=36.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
..++|+|......+...+..+. .-++....|+||+..+.+|...+.-
T Consensus 2 ~~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC 51 (319)
T PRK06090 2 NNDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLC 51 (319)
T ss_pred CcCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3578888888777776665554 4577889999999999999877753
No 224
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=56.68 E-value=14 Score=31.49 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=19.3
Q ss_pred CCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 132 MGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 132 mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
=|.|||.+++.+.+.+...+ ..+|||
T Consensus 10 GGVGKTT~~~nLA~~La~~G---~rVLlI 35 (274)
T PRK13235 10 GGIGKSTTTQNTVAGLAEMG---KKVMVV 35 (274)
T ss_pred CCccHHHHHHHHHHHHHHCC---CcEEEE
Confidence 47899999999988886653 236665
No 225
>PRK08760 replicative DNA helicase; Provisional
Probab=56.11 E-value=48 Score=31.10 Aligned_cols=51 Identities=16% Similarity=-0.005 Sum_probs=35.9
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFE 174 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~ 174 (209)
.+.-.|||--.|+|||.-++.++....... ..++++++.-.-..+|...+.
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSlEMs~~ql~~Rl~ 278 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSMEMSASQLAMRLI 278 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEeccCCHHHHHHHHH
Confidence 333468899999999999999987654331 246888877666666665544
No 226
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=55.89 E-value=98 Score=24.26 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHhhCCC-----------------CCcEEEEeCcc----
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKEGHC-----------------KGPFLVSAPLS---- 164 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~~~~~-----------------~~~~LIV~P~s---- 164 (209)
|.+.+..|...+..+. .-||.-.-|.||+-.+.+|+..++..... ..=+.++-|..
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~ 81 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKS 81 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSS
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccch
Confidence 5666677766666554 34778889999999999999888765432 11266777753
Q ss_pred -cHHHHHHHHHHhC------CCceEEEEEcCh
Q psy14604 165 -TIINWEREFETWA------PDFYVVTYVGDK 189 (209)
Q Consensus 165 -l~~qW~~E~~~~~------~~l~v~~y~G~~ 189 (209)
-+.+.. ++..|+ ...+|+++....
T Consensus 82 i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad 112 (162)
T PF13177_consen 82 IKIDQIR-EIIEFLSLSPSEGKYKVIIIDEAD 112 (162)
T ss_dssp BSHHHHH-HHHHHCTSS-TTSSSEEEEEETGG
T ss_pred hhHHHHH-HHHHHHHHHHhcCCceEEEeehHh
Confidence 366777 777775 246677775544
No 227
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=55.59 E-value=24 Score=30.59 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=19.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
+.+|.-+.|.|||..|-++...+...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~ 85 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRL 85 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45778899999999887776555443
No 228
>KOG0336|consensus
Probab=55.56 E-value=12 Score=34.88 Aligned_cols=110 Identities=22% Similarity=0.305 Sum_probs=62.4
Q ss_pred CCCCCChhhhhhhccCCCCcccc---C-CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHH--HHHHHH----
Q psy14604 79 PPEKPTTDLRKKYEKQPPFLDDT---G-MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTIT--FLYSLF---- 148 (209)
Q Consensus 79 ~~~~~~~~~~~~~~~~p~~~~~~---~-~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia--~l~~~~---- 148 (209)
|-+.|.-.+.+.|..-|.++..+ + ..+-|-|-++ |- ..-++..+|-...+|.|||+.-|. |++...
T Consensus 213 pIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQa--WP--I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~ 288 (629)
T KOG0336|consen 213 PIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQA--WP--ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR 288 (629)
T ss_pred cCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcc--cc--eeecCcceEEEEecCCCcCHHHhccceeeeeccchh
Confidence 33334445555555555555432 1 2245566555 33 234778888889999999986553 221111
Q ss_pred hhCCCCCcEEEEeCc-ccHHHHHHHHHHhC--CCceEEEEEcChhHH
Q psy14604 149 KEGHCKGPFLVSAPL-STIINWEREFETWA--PDFYVVTYVGDKDCR 192 (209)
Q Consensus 149 ~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~--~~l~v~~y~G~~~~r 192 (209)
........+||+.|. .|..|-+-|..++. ....|++|.|.+...
T Consensus 289 ~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~e 335 (629)
T KOG0336|consen 289 REQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNE 335 (629)
T ss_pred hhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchh
Confidence 111222247899995 56677888887764 345566666665443
No 229
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=55.25 E-value=27 Score=31.19 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=34.5
Q ss_pred CchHHHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 105 LHAYQLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
++|+|.....-|...+..+. +-++.-..|+||+..+.+|...+.-
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 57888877777766665544 4567889999999999999877764
No 230
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=55.07 E-value=15 Score=31.43 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=19.5
Q ss_pred CCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 132 MGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 132 mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
=|.|||..++.+.+.+...+ .++|||
T Consensus 10 GGVGKTT~a~nLA~~La~~G---~rVLli 35 (279)
T PRK13230 10 GGIGKSTTVCNIAAALAESG---KKVLVV 35 (279)
T ss_pred CCCcHHHHHHHHHHHHHhCC---CEEEEE
Confidence 47899999999988887654 246666
No 231
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=55.06 E-value=29 Score=29.75 Aligned_cols=41 Identities=24% Similarity=0.193 Sum_probs=30.1
Q ss_pred CchHHHHHHHHHHHhhcCCCc-eEEEcCCCCchHHHHHHHHHHHH
Q psy14604 105 LHAYQLEGINWLRYSWGQNID-TILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g-~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
+-+.|.+.+.++. ....| .+++-.+|.|||-...+++..+.
T Consensus 64 ~~~~~~~~l~~~~---~~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 64 LKPENLEIFRKLL---EKPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHHHHHHHHH---hcCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 5667877776554 23333 57899999999999988877664
No 232
>PRK06921 hypothetical protein; Provisional
Probab=54.97 E-value=58 Score=27.99 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=22.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
+.+.+|.-..|.|||..+.|++..+...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 4567788899999999999988777654
No 233
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=54.70 E-value=32 Score=33.88 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=42.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh-CCCCCcEEEEeCcc-cHHHHHHHHHHhC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-GHCKGPFLVSAPLS-TIINWEREFETWA 177 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~-~~~~~~~LIV~P~s-l~~qW~~E~~~~~ 177 (209)
.|-|-|.++|.+- . +-.++--..|.|||.+.+.-+..+... +-....+|+|+-.. ....-.+-+.+.+
T Consensus 9 ~Ln~~Q~~av~~~-----~-g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAAP-----L-GNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhCC-----C-CCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 4778899998522 2 334455558999999999988888754 32233477777643 3333444444443
No 234
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=54.70 E-value=15 Score=30.96 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=18.8
Q ss_pred CCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 132 MGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 132 mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
-|.|||.+++.+.+++...+ ..+|||
T Consensus 9 GGVGKTT~~~nLA~~La~~g---~rVLli 34 (268)
T TIGR01281 9 GGIGKSTTSSNLSVAFAKLG---KRVLQI 34 (268)
T ss_pred CcCcHHHHHHHHHHHHHhCC---CeEEEE
Confidence 47899999999887776543 236655
No 235
>PRK06904 replicative DNA helicase; Validated
Probab=54.29 E-value=65 Score=30.18 Aligned_cols=50 Identities=16% Similarity=0.044 Sum_probs=33.7
Q ss_pred cCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 121 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 121 ~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
..+.=.|||--+|+|||.-++.++...... ...|+|+++.-.-..++..-
T Consensus 219 ~~G~LiiIaarPg~GKTafalnia~~~a~~--~g~~Vl~fSlEMs~~ql~~R 268 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFAMNLCENAAMA--SEKPVLVFSLEMPAEQIMMR 268 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHH
Confidence 344446999999999999998877654332 23468888775555554443
No 236
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=54.28 E-value=23 Score=25.87 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=29.3
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHhhC---CCCCcEEEEeCccc-HHHHHHHHHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFKEG---HCKGPFLVSAPLST-IINWEREFET 175 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~~~---~~~~~~LIV~P~sl-~~qW~~E~~~ 175 (209)
..+++.-+.|.|||..+-.++..+.... ....-+.|-||... ...+..++..
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 60 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILE 60 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3467777899999999988887664321 01112455566544 4445555443
No 237
>PRK04328 hypothetical protein; Provisional
Probab=53.66 E-value=53 Score=27.70 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=25.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
-++.-+.|.|||.-++.|++.....+ .++|+|.-
T Consensus 26 ili~G~pGsGKT~l~~~fl~~~~~~g---e~~lyis~ 59 (249)
T PRK04328 26 VLLSGGPGTGKSIFSQQFLWNGLQMG---EPGVYVAL 59 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEEe
Confidence 46788999999999999988755443 34666654
No 238
>KOG0989|consensus
Probab=53.57 E-value=27 Score=31.37 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHhhcCCC--ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 107 AYQLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 107 ~~Q~~gv~~l~~~~~~~~--g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
-+|...|+-|.+...... .-++--..|.|||.++++|..+++-
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 468888887776665522 3466778999999999999877764
No 239
>PRK14974 cell division protein FtsY; Provisional
Probab=53.10 E-value=61 Score=29.03 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=30.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc----ccHHHHHHHHHHh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL----STIINWEREFETW 176 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~----sl~~qW~~E~~~~ 176 (209)
.+|.-..|.|||-++..+...+...+ ..++|++.- ..+.||..-....
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~g---~~V~li~~Dt~R~~a~eqL~~~a~~l 194 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKNG---FSVVIAAGDTFRAGAIEQLEEHAERL 194 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcCcHHHHHHHHHHHHHc
Confidence 45566899999998877776554432 245556543 3456776555443
No 240
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=52.52 E-value=60 Score=26.08 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=28.0
Q ss_pred EEEEeCcccHHHHHHHHHHhCCCceEEEEEcChhHH
Q psy14604 157 FLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCR 192 (209)
Q Consensus 157 ~LIV~P~sl~~qW~~E~~~~~~~l~v~~y~G~~~~r 192 (209)
++|+|+ +|-.+..+-|..-+|++..+-.+|+...-
T Consensus 70 ~vi~CS-ALKr~YRD~LR~~~~~~~Fv~L~g~~~~i 104 (161)
T COG3265 70 VVIACS-ALKRSYRDLLREANPGLRFVYLDGDFDLI 104 (161)
T ss_pred eEEecH-HHHHHHHHHHhccCCCeEEEEecCCHHHH
Confidence 566664 77888888999999999999999988543
No 241
>KOG0347|consensus
Probab=52.25 E-value=15 Score=35.38 Aligned_cols=65 Identities=26% Similarity=0.303 Sum_probs=42.2
Q ss_pred EE-EcCCCCchHHHH-HHHHHHHHhh------------CCCCCcEEEEeCc-ccHHHHHHHHHHhC--CCceEEEEEcCh
Q psy14604 127 IL-ADEMGLGKTIQT-ITFLYSLFKE------------GHCKGPFLVSAPL-STIINWEREFETWA--PDFYVVTYVGDK 189 (209)
Q Consensus 127 iL-aD~mGLGKT~q~-ia~l~~~~~~------------~~~~~~~LIV~P~-sl~~qW~~E~~~~~--~~l~v~~y~G~~ 189 (209)
|| |.++|.|||+.- |-++..+... .....-.|||+|. .|+.|=.+.|...+ +.+.+..++|.-
T Consensus 222 IlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGL 301 (731)
T KOG0347|consen 222 ILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGL 301 (731)
T ss_pred cccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechh
Confidence 44 679999999852 2223211111 0111126999995 67788899888876 688898888876
Q ss_pred hH
Q psy14604 190 DC 191 (209)
Q Consensus 190 ~~ 191 (209)
..
T Consensus 302 av 303 (731)
T KOG0347|consen 302 AV 303 (731)
T ss_pred HH
Confidence 43
No 242
>PRK10037 cell division protein; Provisional
Probab=52.13 E-value=18 Score=30.33 Aligned_cols=29 Identities=31% Similarity=0.296 Sum_probs=21.0
Q ss_pred EcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 129 ADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 129 aD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
.-=-|.|||..++.+.+.+...+ ..+|||
T Consensus 8 n~KGGvGKTT~a~nLA~~La~~G---~rVLlI 36 (250)
T PRK10037 8 GVRGGVGTTSITAALAWSLQMLG---ENVLVI 36 (250)
T ss_pred cCCCCccHHHHHHHHHHHHHhcC---CcEEEE
Confidence 33458899999999988876654 246666
No 243
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=51.81 E-value=62 Score=33.41 Aligned_cols=77 Identities=18% Similarity=0.112 Sum_probs=48.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH---HHHHHHHHHhCCC
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI---INWEREFETWAPD 179 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~---~qW~~E~~~~~~~ 179 (209)
...++-|+-|-- . -+.|.|-=+.+|=|||+++...++.....+ .+-.||-+=..|. ..|...+-.|+ .
T Consensus 137 m~~ydVQLiGgi--v----Lh~G~IAEM~TGEGKTLvatlp~yLnAL~G--~gVHvVTvNDYLA~RDaewm~p~y~fl-G 207 (1025)
T PRK12900 137 MVPYDVQLIGGI--V----LHSGKISEMATGEGKTLVSTLPTFLNALTG--RGVHVVTVNDYLAQRDKEWMNPVFEFH-G 207 (1025)
T ss_pred ccccchHHhhhH--H----hhcCCccccCCCCCcchHhHHHHHHHHHcC--CCcEEEeechHhhhhhHHHHHHHHHHh-C
Confidence 344555776542 2 356788888999999998653322211122 2334555556776 45999999998 7
Q ss_pred ceEEEEEcC
Q psy14604 180 FYVVTYVGD 188 (209)
Q Consensus 180 l~v~~y~G~ 188 (209)
|.|-+...+
T Consensus 208 LtVg~i~~~ 216 (1025)
T PRK12900 208 LSVGVILNT 216 (1025)
T ss_pred CeeeeeCCC
Confidence 888776554
No 244
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=51.73 E-value=27 Score=31.36 Aligned_cols=41 Identities=12% Similarity=0.268 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|.+++..|...+..+. ..+|.-..|+|||..+..+...++.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 5566777777666666 4678999999999999988877754
No 245
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.54 E-value=87 Score=28.99 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=41.6
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-c---ccHHHHHHHHHHhCCCceEEEEEcChhHHHHHh------
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-L---STIINWEREFETWAPDFYVVTYVGDKDCRIVLR------ 196 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~---sl~~qW~~E~~~~~~~l~v~~y~G~~~~r~~i~------ 196 (209)
+|.-..|.|||-++..+...+...+ .++.+|+- + ..+.||..-.... ++.+.+......-...+.
T Consensus 210 ~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDtyR~gAveQLk~yae~l--gvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 210 SLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTFRSGAVEQFQGYADKL--DVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCccCccHHHHHHHHhhcC--CCCEEecCCHHHHHHHHHHHHhcC
Confidence 4455789999998888776654443 23555544 2 3477887654432 233332222222223222
Q ss_pred hhceeccCcCCC
Q psy14604 197 DHDISWEDTANR 208 (209)
Q Consensus 197 ~~~~~~~~~~~r 208 (209)
.+++-+.|.+-|
T Consensus 285 ~~D~VLIDTAGr 296 (407)
T PRK12726 285 CVDHILIDTVGR 296 (407)
T ss_pred CCCEEEEECCCC
Confidence 256666676654
No 246
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=50.89 E-value=92 Score=26.84 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=22.3
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
++.-..|.|||-++..+...+...+ ..++||+-
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~~g---~~V~li~~ 108 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKKQG---KSVLLAAG 108 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEeC
Confidence 3446889999999888876664432 34666654
No 247
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=50.74 E-value=20 Score=30.33 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=20.3
Q ss_pred CCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 131 EMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 131 ~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
=-|.|||.+++.+.+.+...+ ..+|||
T Consensus 10 KGGVGKTT~~~nLA~~la~~G---~kVLli 36 (270)
T PRK13185 10 KGGIGKSTTSSNLSAAFAKLG---KKVLQI 36 (270)
T ss_pred CCCCCHHHHHHHHHHHHHHCC---CeEEEE
Confidence 458999999999888876553 346666
No 248
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=50.74 E-value=95 Score=27.20 Aligned_cols=46 Identities=22% Similarity=0.150 Sum_probs=30.6
Q ss_pred CCchHHHHHHH-HHHHhhcC--CCceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 104 QLHAYQLEGIN-WLRYSWGQ--NIDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 104 ~L~~~Q~~gv~-~l~~~~~~--~~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
.-|..|.+.+. ++...... ....+|.-..|.|||..+-+++..+..
T Consensus 18 ~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 18 VHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34677777665 44332222 234677888999999999888876643
No 249
>PRK09183 transposase/IS protein; Provisional
Probab=50.57 E-value=55 Score=27.95 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=22.0
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
.+...+|--..|.|||.-+.++...+...
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 56667777789999999998886555443
No 250
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=50.25 E-value=18 Score=28.05 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhC
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~ 151 (209)
|.+.+.|.|||..++.++..+...+
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g 26 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAG 26 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCC
Confidence 5677899999999999998887654
No 251
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=50.07 E-value=21 Score=29.70 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=21.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~ 151 (209)
-|-+-++|.|||+.+++++..+...+
T Consensus 6 fIt~t~t~vGKT~vt~~L~~~l~~~g 31 (231)
T PRK12374 6 FITGTDTSVGKTVVSRALLQALASQG 31 (231)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 45678999999999999998887764
No 252
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=49.86 E-value=20 Score=31.12 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=18.4
Q ss_pred CCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 133 GLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 133 GLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
|.|||.+++.+.+.+...+. .+|||
T Consensus 10 GVGKTTta~nLA~~La~~G~---rVLlI 34 (290)
T CHL00072 10 GIGKSTTSCNISIALARRGK---KVLQI 34 (290)
T ss_pred CCcHHHHHHHHHHHHHHCCC---eEEEE
Confidence 78999999999888766542 35554
No 253
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=49.82 E-value=12 Score=29.16 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=15.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHH
Q psy14604 126 TILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
++|-+.+|+|||..+.++...+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 5788999999999998886554
No 254
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=49.73 E-value=18 Score=33.50 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.5
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhC
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~ 151 (209)
|.+.+.|.|||+.+++++..+...+
T Consensus 4 I~gT~t~vGKT~vt~~L~~~L~~~G 28 (449)
T TIGR00379 4 IAGTSSGVGKTTISTGIMKALSRRK 28 (449)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCC
Confidence 5678899999999999998887665
No 255
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=49.61 E-value=20 Score=29.28 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=22.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGH 152 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~ 152 (209)
.|.+.+.|.|||..+++++..+...+.
T Consensus 3 ~I~~t~t~~GKT~vs~~L~~~l~~~g~ 29 (222)
T PRK00090 3 FVTGTDTDVGKTVVTAALAQALREAGY 29 (222)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHHcCC
Confidence 366789999999999999988876653
No 256
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.57 E-value=16 Score=35.69 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=29.0
Q ss_pred EcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccHHHHH
Q psy14604 129 ADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWE 170 (209)
Q Consensus 129 aD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~~qW~ 170 (209)
-+.+|.|||+.+.++|+.++..+ .+.+|..|- .+++.--.
T Consensus 3 ~matgsgkt~~ma~lil~~y~kg--yr~flffvnq~nilekt~ 43 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKG--YRNFLFFVNQANILEKTK 43 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhc--hhhEEEEecchhHHHHHH
Confidence 45689999999999999998876 344666554 55555433
No 257
>KOG1942|consensus
Probab=49.41 E-value=33 Score=30.88 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=30.2
Q ss_pred cCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHH
Q psy14604 121 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFE 174 (209)
Q Consensus 121 ~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~ 174 (209)
..+...+||-..|.|||..++++-..+- +-.=.||..--.-+.+|+.
T Consensus 62 maGravLlaGppgtGKTAlAlaisqELG-------~kvPFcpmvgSEvyS~EvK 108 (456)
T KOG1942|consen 62 MAGRAVLLAGPPGTGKTALALAISQELG-------PKVPFCPMVGSEVYSNEVK 108 (456)
T ss_pred ccCcEEEEecCCCCchhHHHHHHHHHhC-------CCCCcccccchhhhhhhhh
Confidence 3455678899999999998888766551 2233567554444444443
No 258
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=49.23 E-value=34 Score=27.20 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=28.6
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
.+.-.+|--+.|.|||.=+=+++..+-......+||--++
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtlv 63 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTLV 63 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeeee
Confidence 3334567789999999999888888766665666654443
No 259
>PRK05748 replicative DNA helicase; Provisional
Probab=48.98 E-value=71 Score=29.44 Aligned_cols=44 Identities=14% Similarity=0.034 Sum_probs=30.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN 168 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~q 168 (209)
+.-.|||--+|+|||.-++.++...... ...+++++..-.-..+
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~--~g~~v~~fSlEms~~~ 246 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATK--TDKNVAIFSLEMGAES 246 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHh--CCCeEEEEeCCCCHHH
Confidence 3346889999999999999998765432 1346777765443333
No 260
>PLN03025 replication factor C subunit; Provisional
Probab=48.69 E-value=35 Score=29.86 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCC--CceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~--~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
|.+.+..|......+ ...+|.-..|.|||..+.++...++
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 444555554443333 2468889999999999998877664
No 261
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=48.61 E-value=55 Score=27.50 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=30.4
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
.+.=.+||-..|.|||.-++.++..+.... ..++|+++.-
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~~vly~SlE 57 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG--GYPVLYFSLE 57 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT--SSEEEEEESS
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc--CCeEEEEcCC
Confidence 333479999999999999999988776653 2468888774
No 262
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=48.39 E-value=32 Score=32.66 Aligned_cols=41 Identities=20% Similarity=0.124 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
-|...+..|.+.+..+. ..||.-..|.|||..+-.+...+.
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 36666666665555544 578899999999999988876664
No 263
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=48.21 E-value=43 Score=27.55 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=27.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
-.+|+-..|.|||.-++.+++...... ..++|.++.
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~ 50 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSL 50 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeC
Confidence 358899999999999999887766552 235777763
No 264
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=47.81 E-value=24 Score=29.82 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=18.6
Q ss_pred CCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 132 MGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 132 mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
-|.|||..++.+.+.+...+ .++|||
T Consensus 9 GGvGKTT~a~nLA~~la~~G---~rvlli 34 (267)
T cd02032 9 GGIGKSTTSSNLSVALAKRG---KKVLQI 34 (267)
T ss_pred CCCCHHHHHHHHHHHHHHCC---CcEEEE
Confidence 47899999999888776553 235554
No 265
>KOG0337|consensus
Probab=47.65 E-value=25 Score=32.85 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=50.7
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHH-HHHHHhhCCCCCcEEEEeCc-ccHHH---HHHHHHHhCCC
Q psy14604 105 LHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITF-LYSLFKEGHCKGPFLVSAPL-STIIN---WEREFETWAPD 179 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~-l~~~~~~~~~~~~~LIV~P~-sl~~q---W~~E~~~~~~~ 179 (209)
..|-|+..+.-+. .+...+=-.-+|-|||..-+-- +..+.......-..||+.|. .|..| -..++.+++ .
T Consensus 44 ptpiqRKTipliL----e~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt-~ 118 (529)
T KOG0337|consen 44 PTPIQRKTIPLIL----EGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT-K 118 (529)
T ss_pred CCchhccccccee----eccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-c
Confidence 4566777665443 2222222234788999754433 33333332233368999995 45555 455666665 6
Q ss_pred ceEE-EEEcChhHHHHHhh
Q psy14604 180 FYVV-TYVGDKDCRIVLRD 197 (209)
Q Consensus 180 l~v~-~y~G~~~~r~~i~~ 197 (209)
+.+. +|+|+.-+.+.+.-
T Consensus 119 lr~s~~~ggD~~eeqf~~l 137 (529)
T KOG0337|consen 119 LRQSLLVGGDSIEEQFILL 137 (529)
T ss_pred hhhhhhcccchHHHHHHHh
Confidence 6666 77888877766554
No 266
>PRK08506 replicative DNA helicase; Provisional
Probab=47.63 E-value=72 Score=29.82 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=27.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
-.|||-.+|+|||.-++.++...... ..++++++.-
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~---g~~V~~fSlE 229 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQ---DKGVAFFSLE 229 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhc---CCcEEEEeCc
Confidence 35899999999999999998766433 3467777663
No 267
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.56 E-value=55 Score=30.94 Aligned_cols=42 Identities=21% Similarity=0.071 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 108 YQLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
.|...+..|......+. ..||.-+.|.|||..+..++..+..
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 35656555555444444 2488999999999999888776643
No 268
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=47.43 E-value=88 Score=28.47 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=27.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
+.-.|||-..|+|||.-++.++..+... ...++++++.
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fSl 231 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALR--EGKPVLFFSL 231 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEEC
Confidence 3335889999999999999998665422 1346787774
No 269
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=47.29 E-value=23 Score=29.98 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=19.5
Q ss_pred CCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 132 MGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 132 mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
=|.|||..++.+.+++...+ ..+|||
T Consensus 9 GGVGKTT~a~nLA~~La~~G---~~Vlli 34 (275)
T TIGR01287 9 GGIGKSTTTQNIAAALAEMG---KKVMIV 34 (275)
T ss_pred CcCcHHHHHHHHHHHHHHCC---CeEEEE
Confidence 37899999999988887654 246665
No 270
>PTZ00293 thymidine kinase; Provisional
Probab=47.28 E-value=37 Score=28.50 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=23.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
++--.|+.|||-+.|-.+...... ..+++++-|
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~a---g~kv~~~kp 40 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYS---EKKCVVIKY 40 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHc---CCceEEEEe
Confidence 456789999998888776544333 345777777
No 271
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=47.17 E-value=36 Score=26.50 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=22.1
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
+.+---|.|||..++.+...+...+ .++|+|
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g---~~vllv 34 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLG---YKVGLL 34 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcC---CcEEEE
Confidence 4455678999999998887776543 346666
No 272
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=47.13 E-value=37 Score=28.91 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=23.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
-+++-+.|.|||.-++.|++..... ..+++.|.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis 71 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASR---GNPVLFVT 71 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEE
Confidence 3678899999999999988765443 23456555
No 273
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.09 E-value=37 Score=30.37 Aligned_cols=41 Identities=20% Similarity=0.080 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
-|...+..+.+.+..+. ..+|.-+.|.|||..+.+++..+.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 36666666666555443 247899999999999988887764
No 274
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=47.03 E-value=34 Score=30.50 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHH
Q psy14604 113 INWLRYSWGQNIDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 113 v~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
..||..+...+...+++-.+|.|||-..-+++..+
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 45777777778888999999999998887776544
No 275
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=47.00 E-value=26 Score=28.59 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=20.1
Q ss_pred CCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 131 EMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 131 ~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
=-|.|||..+..+.+++...+ ..+|||
T Consensus 8 KGGvGKTt~~~nLA~~la~~G---~rvLli 34 (212)
T cd02117 8 KGGIGKSTTSQNLSAALAEMG---KKVLQV 34 (212)
T ss_pred CCcCcHHHHHHHHHHHHHHCC---CcEEEE
Confidence 568999999999888877654 236665
No 276
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=46.91 E-value=93 Score=27.47 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 108 YQLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
.|...+..|...+..+. .-+|.-+-|.|||..+.++...++-
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c 54 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC 54 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC
Confidence 35556666666555443 3488899999999999999887754
No 277
>KOG0346|consensus
Probab=46.61 E-value=50 Score=31.16 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHH-HHHHHHhhCCC-----CCcEEEEeCc-ccHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQNIDTILADEMGLGKTIQTIT-FLYSLFKEGHC-----KGPFLVSAPL-STIINWEREFETW 176 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia-~l~~~~~~~~~-----~~~~LIV~P~-sl~~qW~~E~~~~ 176 (209)
|..+|-.+. .+...+--.-+|.|||..-+- +|..++..... .-..+|++|. .|+.|=...|++.
T Consensus 46 Qs~aIplaL----EgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL 116 (569)
T KOG0346|consen 46 QSSAIPLAL----EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKL 116 (569)
T ss_pred hhcccchhh----cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHH
Confidence 666666554 555555556799999987443 34444333211 1246889995 6777777777665
No 278
>PHA02518 ParA-like protein; Provisional
Probab=46.59 E-value=26 Score=27.98 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=26.9
Q ss_pred CCCCchHHHHHHHHHHHHhhCCCCCcEEEE--eCcccHHHHHHH
Q psy14604 131 EMGLGKTIQTITFLYSLFKEGHCKGPFLVS--APLSTIINWERE 172 (209)
Q Consensus 131 ~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV--~P~sl~~qW~~E 172 (209)
==|.|||..++.+.+.+...+ .++||| .|..-+..|...
T Consensus 9 KGGvGKTT~a~~la~~la~~g---~~vlliD~D~q~~~~~~~~~ 49 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADG---HKVLLVDLDPQGSSTDWAEA 49 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CeEEEEeCCCCCChHHHHHh
Confidence 347899999999887776543 346665 356667778653
No 279
>PRK13236 nitrogenase reductase; Reviewed
Probab=46.56 E-value=25 Score=30.59 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=15.9
Q ss_pred CCchHHHHHHHHHHHHhhC
Q psy14604 133 GLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 133 GLGKT~q~ia~l~~~~~~~ 151 (209)
|.|||..++.+.+.+...+
T Consensus 16 GVGKTt~a~NLA~~La~~G 34 (296)
T PRK13236 16 GIGKSTTSQNTLAAMAEMG 34 (296)
T ss_pred cCCHHHHHHHHHHHHHHCC
Confidence 6899999999988877653
No 280
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.55 E-value=30 Score=33.22 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcCCCc---eEEEcCCCCchHHHHHHHHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNID---TILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g---~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
.|...+..|.+.+..+.- .||.-..|.|||..+.+++..+.
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 366677777665555442 37889999999999999887664
No 281
>PRK00784 cobyric acid synthase; Provisional
Probab=46.48 E-value=21 Score=33.42 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=21.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~ 151 (209)
-|.+.++|.|||+.+++++..+...+
T Consensus 6 fItGT~T~vGKT~vt~~L~~~l~~~G 31 (488)
T PRK00784 6 MVQGTASDAGKSTLVAGLCRILARRG 31 (488)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC
Confidence 35678999999999999998887654
No 282
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=46.33 E-value=79 Score=26.52 Aligned_cols=39 Identities=18% Similarity=0.108 Sum_probs=27.5
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
.+.-.+|+-..|.|||..++.++..+.... ..++|++.-
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEc
Confidence 444568899999999999999877765431 234666654
No 283
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=46.23 E-value=47 Score=25.94 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=21.6
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
|.+---|.|||..+..+...+...+ . ++|+|-
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g--~-~VlliD 34 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKG--K-KVLLID 34 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTT--S--EEEEE
T ss_pred EEcCCCCccHHHHHHHHHhcccccc--c-cccccc
Confidence 4555668999999998887776643 2 355543
No 284
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=46.18 E-value=69 Score=29.88 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=34.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 176 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~ 176 (209)
.+|+-++|.|||..++.++..+...+ .++|.|....-..|......++
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g---~kvlYvs~EEs~~qi~~ra~rl 144 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQ---MKVLYVSGEESLQQIKMRAIRL 144 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEECcCCHHHHHHHHHHc
Confidence 47889999999999999887665432 3577777766666665555554
No 285
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=46.16 E-value=41 Score=24.98 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=22.3
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
+|.-..|.|||..+..++...... ..+++++..
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~ 35 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATK---GGKVVYVDI 35 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhc---CCEEEEEEC
Confidence 455668999999998887766442 344555544
No 286
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=45.96 E-value=6.8 Score=37.15 Aligned_cols=70 Identities=11% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHH-------------hhCCCCCcEEEEeCcccHHHHHHHHHHhCC
Q psy14604 112 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF-------------KEGHCKGPFLVSAPLSTIINWEREFETWAP 178 (209)
Q Consensus 112 gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~-------------~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~ 178 (209)
++.|.......+....++.+.|+||+-.+..+|.... +-.....|..|..|+..-..-++.++.+.-
T Consensus 19 Al~~gl~i~~~GYNIfv~G~~GtGr~t~v~~~l~~~a~~~~~P~D~cYV~NF~~p~~P~~l~LpaG~G~~f~~~m~~lie 98 (509)
T PF13654_consen 19 ALEFGLGIRKPGYNIFVMGPPGTGRRTYVRRFLEERAKKKPTPPDWCYVNNFDDPRKPKALSLPAGQGKKFKKDMEELIE 98 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4555555556667778999999999999999874433 223455689999999988888888888764
Q ss_pred Cce
Q psy14604 179 DFY 181 (209)
Q Consensus 179 ~l~ 181 (209)
.+.
T Consensus 99 ~l~ 101 (509)
T PF13654_consen 99 ELK 101 (509)
T ss_dssp ---
T ss_pred ccc
Confidence 443
No 287
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=45.91 E-value=72 Score=33.62 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHH
Q psy14604 106 HAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 169 (209)
Q Consensus 106 ~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW 169 (209)
-+-|..+|. ..+...++.-.-|.|||.+.+.-+..+...+.....+||||=.....++
T Consensus 3 t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e 60 (1232)
T TIGR02785 3 TDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAARE 60 (1232)
T ss_pred CHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHH
Confidence 466888884 2555677888899999999988777665544222358888876555543
No 288
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=45.86 E-value=26 Score=29.38 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=18.8
Q ss_pred CCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 132 MGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 132 mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
=|.|||..+..+.+.+...+ .++|||
T Consensus 10 GGvGKTT~~~nLA~~La~~G---~kVlli 35 (270)
T cd02040 10 GGIGKSTTTQNLSAALAEMG---KKVMIV 35 (270)
T ss_pred CcCCHHHHHHHHHHHHHhCC---CeEEEE
Confidence 47899999999888876543 235555
No 289
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=45.73 E-value=26 Score=29.71 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=18.9
Q ss_pred CCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 132 MGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 132 mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
-|.|||.+++.+.+.+...+ ..+|||
T Consensus 10 GGVGKTT~a~nLA~~La~~G---~rVllv 35 (273)
T PRK13232 10 GGIGKSTTTQNLTAALSTMG---NKILLV 35 (273)
T ss_pred CCCcHHHHHHHHHHHHHhhC---CCeEEE
Confidence 47899999999888776553 235555
No 290
>PRK13531 regulatory ATPase RavA; Provisional
Probab=45.63 E-value=38 Score=32.13 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
|.+.|.-+......+...+|-+++|+|||..|-++....
T Consensus 25 re~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 25 RSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred cHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 444555555555677789999999999999988776543
No 291
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=45.53 E-value=27 Score=29.18 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=16.4
Q ss_pred EEcCCCCchHHHHHHHHHHHH
Q psy14604 128 LADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 128 LaD~mGLGKT~q~ia~l~~~~ 148 (209)
..--=|.|||..++.+..++.
T Consensus 8 ~n~KGGvGKTT~a~nLa~~La 28 (259)
T COG1192 8 ANQKGGVGKTTTAVNLAAALA 28 (259)
T ss_pred EecCCCccHHHHHHHHHHHHH
Confidence 333447899999999988876
No 292
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=45.45 E-value=54 Score=30.26 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 108 YQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
+|.-++.-|.. ..-.-..|.-.-|.|||+-|+|+-+...........++|.=|
T Consensus 232 eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp 284 (436)
T COG1875 232 EQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRP 284 (436)
T ss_pred HHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecC
Confidence 78888876641 122235667778999999999875444333334444555444
No 293
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.37 E-value=1.5e+02 Score=27.05 Aligned_cols=39 Identities=18% Similarity=0.037 Sum_probs=24.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS 164 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s 164 (209)
-.+|.-..|.|||.++..+...+.... ....+.+|....
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~-G~~~V~lit~D~ 177 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRF-GASKVALLTTDS 177 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEeccc
Confidence 356677999999999888876553321 112355555433
No 294
>PRK05595 replicative DNA helicase; Provisional
Probab=45.32 E-value=89 Score=28.81 Aligned_cols=43 Identities=9% Similarity=-0.027 Sum_probs=28.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 169 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW 169 (209)
-.|+|--+|+|||.-++.++..+.... ..++|++..-.-..++
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~--g~~vl~fSlEms~~~l 245 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALRE--GKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHc--CCcEEEEecCCCHHHH
Confidence 358899999999999999886543221 2457777664333333
No 295
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=45.09 E-value=25 Score=32.83 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=21.6
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCC
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGH 152 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~ 152 (209)
|=+...|.|||..+++++.++...+.
T Consensus 5 IAg~~SG~GKTTvT~glm~aL~~rg~ 30 (451)
T COG1797 5 IAGTSSGSGKTTVTLGLMRALRRRGL 30 (451)
T ss_pred EecCCCCCcHHHHHHHHHHHHHhcCC
Confidence 33667899999999999999987753
No 296
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=44.99 E-value=51 Score=26.98 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=27.2
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
...-+|+|. +|.|||.++-.++..+... ...++||+=|.
T Consensus 23 ~~H~~I~G~-TGsGKS~~~~~ll~~l~~~--~~~~~ii~D~~ 61 (229)
T PF01935_consen 23 NRHIAIFGT-TGSGKSNTVKVLLEELLKK--KGAKVIIFDPH 61 (229)
T ss_pred cceEEEECC-CCCCHHHHHHHHHHHHHhc--CCCCEEEEcCC
Confidence 334456665 8999999999999888742 23357777663
No 297
>KOG0092|consensus
Probab=44.97 E-value=57 Score=27.15 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHhCCCceEEEEEcChhHHHHHhh
Q psy14604 165 TIINWEREFETWAPDFYVVTYVGDKDCRIVLRD 197 (209)
Q Consensus 165 l~~qW~~E~~~~~~~l~v~~y~G~~~~r~~i~~ 197 (209)
-+.+|..|+++-.|.--++.+.|++..-...|+
T Consensus 95 ~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~ 127 (200)
T KOG0092|consen 95 KAKNWVKELQRQASPNIVIALVGNKADLLERRE 127 (200)
T ss_pred HHHHHHHHHHhhCCCCeEEEEecchhhhhhccc
Confidence 467899999999986566667888866655433
No 298
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=44.93 E-value=29 Score=32.11 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=22.0
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGH 152 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~ 152 (209)
.|.+...|.|||+.+++++..+...+.
T Consensus 7 ~I~gt~s~~GKT~it~~L~~~L~~~G~ 33 (451)
T PRK01077 7 VIAAPASGSGKTTVTLGLMRALRRRGL 33 (451)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCC
Confidence 355778999999999999988877653
No 299
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=44.81 E-value=85 Score=32.42 Aligned_cols=58 Identities=12% Similarity=0.042 Sum_probs=37.9
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST 165 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl 165 (209)
+..|-+-|.++|..+. ....-++|--..|.|||...-++ ..++... ...+++++|...
T Consensus 344 g~~Ls~eQr~Av~~il---~s~~v~vv~G~AGTGKTT~l~~~-~~~~e~~--G~~V~~~ApTGk 401 (988)
T PRK13889 344 GLVLSGEQADALAHVT---DGRDLGVVVGYAGTGKSAMLGVA-REAWEAA--GYEVRGAALSGI 401 (988)
T ss_pred CCCCCHHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHHH-HHHHHHc--CCeEEEecCcHH
Confidence 4678899999998664 22334677778899999865444 3433332 234777888553
No 300
>PRK10867 signal recognition particle protein; Provisional
Probab=44.73 E-value=71 Score=29.72 Aligned_cols=44 Identities=23% Similarity=0.217 Sum_probs=27.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-c---ccHHHHHH
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-L---STIINWER 171 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~---sl~~qW~~ 171 (209)
.++.-..|.|||.+++-+...+.... .. .+++|+- . ....||..
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~-G~-kV~lV~~D~~R~aa~eQL~~ 150 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKK-KK-KVLLVAADVYRPAAIEQLKT 150 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhc-CC-cEEEEEccccchHHHHHHHH
Confidence 35677899999999988877765541 12 3455444 2 34455543
No 301
>KOG4280|consensus
Probab=44.69 E-value=13 Score=35.75 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHhhcCCCceEEEc-CCCCchHHHHHHH--------------HHHHHhhCCCCCcEEEEeCcccHHHHH
Q psy14604 106 HAYQLEGINWLRYSWGQNIDTILAD-EMGLGKTIQTITF--------------LYSLFKEGHCKGPFLVSAPLSTIINWE 170 (209)
Q Consensus 106 ~~~Q~~gv~~l~~~~~~~~g~iLaD-~mGLGKT~q~ia~--------------l~~~~~~~~~~~~~LIV~P~sl~~qW~ 170 (209)
-=||..+..-+...+.-..|+|+|. .+|.|||.+.+.- |+....... ..+-++|-.|-+....
T Consensus 68 dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~--~~~~f~vrvS~lEiYn 145 (574)
T KOG4280|consen 68 DVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERK--EKTRFLVRVSYLEIYN 145 (574)
T ss_pred HHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhcc--ccceEEEEeehHHHHh
Confidence 3477777776666777777999998 7999999876543 333333321 1235666777888888
Q ss_pred HHHHHhC
Q psy14604 171 REFETWA 177 (209)
Q Consensus 171 ~E~~~~~ 177 (209)
++|...+
T Consensus 146 E~i~DLL 152 (574)
T KOG4280|consen 146 ESIRDLL 152 (574)
T ss_pred HHHHHHh
Confidence 8887765
No 302
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=44.63 E-value=61 Score=21.60 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=16.6
Q ss_pred EEcCCCCchHHHHHHHHHHHHh
Q psy14604 128 LADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 128 LaD~mGLGKT~q~ia~l~~~~~ 149 (209)
+.-..|.|||..+..++..+..
T Consensus 4 ~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 4 VTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 3333499999999888877765
No 303
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=44.59 E-value=27 Score=30.31 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=20.2
Q ss_pred cCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 130 DEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 130 D~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
---|.|||.+++.+.+.+...+ ..+|||
T Consensus 11 ~KGGvGKTt~~~nLa~~la~~g---~kVLli 38 (295)
T PRK13234 11 GKGGIGKSTTSQNTLAALVEMG---QKILIV 38 (295)
T ss_pred CCCCccHHHHHHHHHHHHHHCC---CeEEEE
Confidence 3457999999999888876653 236666
No 304
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=44.13 E-value=1.5e+02 Score=24.18 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=20.3
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
...-+|.-+.|.|||.-+.++.....
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34578888999999998888766553
No 305
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=44.12 E-value=75 Score=27.70 Aligned_cols=61 Identities=21% Similarity=0.216 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCCC-ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc------cHHHHHHHHHH
Q psy14604 111 EGINWLRYSWGQNI-DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS------TIINWEREFET 175 (209)
Q Consensus 111 ~gv~~l~~~~~~~~-g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s------l~~qW~~E~~~ 175 (209)
+++.-+......+. -..+.-++|.|||+..=+++.++ .... -++|+.|.. ++.-|..++..
T Consensus 38 e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~-~~d~---~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 38 EALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASL-NEDQ---VAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred HHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhc-CCCc---eEEEEecCcchhHHHHHHHHHHHhcc
Confidence 34444444444444 35567789999999988555444 3322 234566643 23447777765
No 306
>PRK09165 replicative DNA helicase; Provisional
Probab=43.91 E-value=96 Score=29.24 Aligned_cols=48 Identities=17% Similarity=0.053 Sum_probs=31.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCC------------CCCcEEEEeCcccHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGH------------CKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~------------~~~~~LIV~P~sl~~qW~~E 172 (209)
-.|||--+|+|||.-++.++........ ...++|++..-.-..+...-
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R 278 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATR 278 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHH
Confidence 3689999999999999988766643311 13467777664444444333
No 307
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.83 E-value=39 Score=32.90 Aligned_cols=42 Identities=21% Similarity=0.035 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 108 YQLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
.|...+..|...+..+. .-||.-+.|.|||..+.+|...+.-
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 35666666665555543 4578899999999999999877753
No 308
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=43.67 E-value=42 Score=28.35 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=18.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
.+|.-..|.|||..|-++...+..
T Consensus 45 vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 578899999999988777655443
No 309
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=43.59 E-value=45 Score=29.61 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=31.2
Q ss_pred CchHHHHHHHHHHHhhcCCCc-eEEEcCCCCchHHHHHHHHHHHH
Q psy14604 105 LHAYQLEGINWLRYSWGQNID-TILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g-~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
++|+|.....-+.....+-.. -+|.-..|+|||..+..|...+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 467777776655544333333 46788999999999999987765
No 310
>PRK10818 cell division inhibitor MinD; Provisional
Probab=43.28 E-value=30 Score=29.14 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=17.4
Q ss_pred EEcCCCCchHHHHHHHHHHHHhh
Q psy14604 128 LADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 128 LaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
..---|.|||..++.+.+.+...
T Consensus 8 ~s~KGGvGKTt~a~nlA~~la~~ 30 (270)
T PRK10818 8 TSGKGGVGKTTSSAAIATGLAQK 30 (270)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHC
Confidence 33445899999999998877654
No 311
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=43.19 E-value=42 Score=32.51 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
|.+++..+......+...+|.-++|.|||..+-++...+.
T Consensus 23 ~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~ 62 (608)
T TIGR00764 23 QEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLP 62 (608)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcC
Confidence 6677777777677777889999999999999888775553
No 312
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=42.86 E-value=69 Score=29.75 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=19.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHHH
Q psy14604 126 TILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
.+++-..|.|||.++.-+...+.
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 46788899999999988877764
No 313
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.73 E-value=45 Score=30.29 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|...+..|...+..+. .-||.-..|.|||..|.+|...+.-
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5566666666655543 3578889999999999998776643
No 314
>PHA02542 41 41 helicase; Provisional
Probab=42.69 E-value=75 Score=29.85 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=25.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
-.|+|--+|+|||.-++.++...... ..++|++.
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~---g~~Vl~fS 225 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQ---GYNVLYIS 225 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhc---CCcEEEEe
Confidence 36899999999999999988666432 34566654
No 315
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=42.61 E-value=48 Score=29.80 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=32.0
Q ss_pred CchHHHHHHHHHHHhhcCCC-ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 105 LHAYQLEGINWLRYSWGQNI-DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~-g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
++|+|...-+-|.....+-. +-+|.-..|+||+..+.+|...+.-
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 57877777666655432222 3456789999999999999877754
No 316
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=42.02 E-value=1.3e+02 Score=28.06 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=48.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhC---CCceEEEEEcChhHHHHHhh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWA---PDFYVVTYVGDKDCRIVLRD 197 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~---~~l~v~~y~G~~~~r~~i~~ 197 (209)
-+++-|.|.||+-..+-+...+.... ++|-|+-..-+.||.--..+.- .++++...+.-.+-...+.+
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 36799999999977666666654432 6999999999999999999985 45555555555555454443
No 317
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=41.75 E-value=96 Score=31.40 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhcCC--CceEEEcCCCCchHHHHHHHHHHHHhhCC---CCCcEE-------EEeCcccHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLFKEGH---CKGPFL-------VSAPLSTIINWEREFETW 176 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~--~g~iLaD~mGLGKT~q~ia~l~~~~~~~~---~~~~~L-------IV~P~sl~~qW~~E~~~~ 176 (209)
|..-+..+...+... .+.||.-+.|.|||..+=.+...+..... ...+.+ ++++......|++.|...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~i 271 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSV 271 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHH
Confidence 555577776654443 46899999999999988777665532211 111223 344555667788887766
Q ss_pred C
Q psy14604 177 A 177 (209)
Q Consensus 177 ~ 177 (209)
+
T Consensus 272 i 272 (852)
T TIGR03345 272 I 272 (852)
T ss_pred H
Confidence 4
No 318
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=41.70 E-value=50 Score=29.95 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=27.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWE 170 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~ 170 (209)
..|.+|.-+.|.|||..+-++...+ ..+++.+....++..|.
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~l~~~~~ 206 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELVQKFI 206 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHHHhHhhc
Confidence 3467888999999999988775543 23456555555554443
No 319
>KOG0738|consensus
Probab=41.35 E-value=51 Score=30.73 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=32.0
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFET 175 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~ 175 (209)
..|.++.-..|.|||+-|=|+... + .-.+.=|.-.+|..-|.-|=++
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATE----c--~tTFFNVSsstltSKwRGeSEK 291 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATE----C--GTTFFNVSSSTLTSKWRGESEK 291 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHh----h--cCeEEEechhhhhhhhccchHH
Confidence 346788999999999988777543 1 1234455556677889876433
No 320
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=40.99 E-value=62 Score=31.80 Aligned_cols=67 Identities=16% Similarity=0.082 Sum_probs=41.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC-CCCCcEEEEeCcc-cHHHHHHHHHHh
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG-HCKGPFLVSAPLS-TIINWEREFETW 176 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~-~~~~~~LIV~P~s-l~~qW~~E~~~~ 176 (209)
.|-|-|.++|... . +..++--..|.|||-+.+.-+..+.... .....+|+|.-.. ....-.+-+...
T Consensus 4 ~Ln~~Q~~av~~~-----~-g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 4 HLNPEQREAVKTT-----E-GPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred ccCHHHHHHHhCC-----C-CCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4778899998521 2 3345555679999999999888887643 2223466666542 233344444444
No 321
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.54 E-value=49 Score=31.75 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
|...+..|...+..+. ..||.-+.|.|||..+..+...+.
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4555555555555443 357889999999999998887665
No 322
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.49 E-value=53 Score=31.09 Aligned_cols=41 Identities=17% Similarity=0.038 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCCc---eEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQNID---TILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~g---~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|...+..|......+.- .+|.-..|.|||..+.+|...+..
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 55556666555444432 388899999999999998877753
No 323
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=40.31 E-value=1e+02 Score=28.02 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=31.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 176 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~ 176 (209)
.+|.-++|.|||.-++.++..+... ..++|.|.-..-..|......++
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs~~qi~~Ra~rl 132 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEESPEQIKLRADRL 132 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcCHHHHHHHHHHc
Confidence 5778899999999999887766543 24577766544455544444443
No 324
>PRK08840 replicative DNA helicase; Provisional
Probab=40.19 E-value=1.2e+02 Score=28.29 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=29.4
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN 168 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~q 168 (209)
.+.=.|||--+|+|||.-++.++...... ...|++++..-.-..+
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~--~~~~v~~fSlEMs~~q 260 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMD--QDKPVLIFSLEMPAEQ 260 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHh--CCCeEEEEeccCCHHH
Confidence 34446999999999999998876655432 1346776655433333
No 325
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=40.11 E-value=38 Score=29.78 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=19.5
Q ss_pred CCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 131 EMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 131 ~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
--|.|||..+.|+...+...+ .++|||.
T Consensus 9 KGGVGKTT~aaA~A~~~A~~G---~rtLlvS 36 (305)
T PF02374_consen 9 KGGVGKTTVAAALALALARRG---KRTLLVS 36 (305)
T ss_dssp STTSSHHHHHHHHHHHHHHTT---S-EEEEE
T ss_pred CCCCCcHHHHHHHHHHHhhCC---CCeeEee
Confidence 348999999988877766543 3477763
No 326
>PRK13695 putative NTPase; Provisional
Probab=39.93 E-value=1.8e+02 Score=22.65 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=46.3
Q ss_pred CCCceEEEcCCCC--chHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhCCCceEEEEEcChhHHHHHhhh
Q psy14604 122 QNIDTILADEMGL--GKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDH 198 (209)
Q Consensus 122 ~~~g~iLaD~mGL--GKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~~l~v~~y~G~~~~r~~i~~~ 198 (209)
.....|+.||+|- +.+.+....+..+... ..|+|+|+....+..|.++|...- +.. +++=+..+|..+..+
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~---~~~~i~v~h~~~~~~~~~~i~~~~-~~~--i~~~~~~~r~~~~~~ 167 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVLDS---EKPVIATLHRRSVHPFVQEIKSRP-GGR--VYELTPENRDSLPFE 167 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHHhC---CCeEEEEECchhhHHHHHHHhccC-CcE--EEEEcchhhhhHHHH
Confidence 3556899999874 5555555566565532 357888888876666788887765 444 344477777666543
No 327
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.85 E-value=48 Score=29.25 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 113 INWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 113 v~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
+.+|+.+...+...+++-++|.|||-...+++..+-
T Consensus 133 ~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip 168 (312)
T COG0630 133 AAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIP 168 (312)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCC
Confidence 334666678888999999999999998888876543
No 328
>PRK06749 replicative DNA helicase; Provisional
Probab=39.79 E-value=1.2e+02 Score=28.07 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=27.1
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
.+.=.|||--+|+|||.-++.++...... ..+++++..
T Consensus 185 ~G~LiiIaarPgmGKTafal~ia~~~a~~---g~~v~~fSl 222 (428)
T PRK06749 185 EGDFVVLGARPSMGKTAFALNVGLHAAKS---GAAVGLFSL 222 (428)
T ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHhc---CCCEEEEEe
Confidence 33346999999999999999987766533 335665544
No 329
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=39.77 E-value=35 Score=28.92 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=18.8
Q ss_pred CCCchHHHHHHHHHHHHhh-CCCCCcEEEE
Q psy14604 132 MGLGKTIQTITFLYSLFKE-GHCKGPFLVS 160 (209)
Q Consensus 132 mGLGKT~q~ia~l~~~~~~-~~~~~~~LIV 160 (209)
=|.|||.+++.+.+.+... + ..+|||
T Consensus 11 GGVGKTT~a~nLA~~La~~~G---~rvLli 37 (275)
T PRK13233 11 GGIGKSTTTQNTAAAMAYFHD---KKVFIH 37 (275)
T ss_pred CCCcHHHHHHHHHHHHHHhcC---CeEEEe
Confidence 3789999999988877642 3 236766
No 330
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=39.68 E-value=1.1e+02 Score=28.61 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=30.6
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHH
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFET 175 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~ 175 (209)
++.-+.|.|||.-++.|++.....+ .++++|.-.....+-.+.+..
T Consensus 277 li~G~~G~GKT~l~~~~~~~~~~~g---~~~~yis~e~~~~~i~~~~~~ 322 (509)
T PRK09302 277 LVSGATGTGKTLLASKFAEAACRRG---ERCLLFAFEESRAQLIRNARS 322 (509)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCC---CcEEEEEecCCHHHHHHHHHH
Confidence 6678999999999999987765443 356777654444443333333
No 331
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=39.57 E-value=1.4e+02 Score=31.20 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=61.2
Q ss_pred CchHHHHHHHHHHHhhcCCC----ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhC--C
Q psy14604 105 LHAYQLEGINWLRYSWGQNI----DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWA--P 178 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~----g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~--~ 178 (209)
=+-+|-.|++.+..+..... -||---.+|-|||+.-.=+++++......++-++-+==-+|-.|-=.++..=. .
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~ 488 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS 488 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC
Confidence 35689999987765433222 24555678999999998888888776655552222222466677777776643 4
Q ss_pred CceEEEEEcChhHHHHH
Q psy14604 179 DFYVVTYVGDKDCRIVL 195 (209)
Q Consensus 179 ~l~v~~y~G~~~~r~~i 195 (209)
+-.+.+..|+...+..-
T Consensus 489 ~ddLAVlIGs~Av~~L~ 505 (1110)
T TIGR02562 489 DDDLAVLIGGTAVQTLF 505 (1110)
T ss_pred ccceEEEECHHHHHHHH
Confidence 66788888888777544
No 332
>PHA02533 17 large terminase protein; Provisional
Probab=39.44 E-value=1.1e+02 Score=29.31 Aligned_cols=56 Identities=20% Similarity=0.115 Sum_probs=35.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
+.|.|+|..-+..|. ...-.++.-.=..|||..+.++++...... ...-++|++|.
T Consensus 58 f~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~~-~~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCFN-KDKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHhC-CCCEEEEEeCC
Confidence 679999999887663 223335555667999998876554332222 12357888883
No 333
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=39.38 E-value=62 Score=29.27 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
|..++..|...+..+. .-+|.-..|+||+..+.+|...++-.
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 6667776766666554 46788899999999999999888643
No 334
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=38.80 E-value=59 Score=28.98 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=28.8
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
..|.+|.-..|.|||..+-++...+ ..+++-++...++..|..+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l------~~~~~~v~~~~l~~~~~g~ 199 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELVRKYIGE 199 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC------CCCEEecchHHHHHHhhhH
Confidence 3467888999999999888775533 2345655555555554433
No 335
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=38.59 E-value=59 Score=29.76 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=30.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
..|.+|.-..|.|||..+-++...+ ..+++.+.+..++..|..+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l~~k~~ge 222 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEFVQKYLGE 222 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHHHHhcch
Confidence 4577889999999999887765432 2356666666666666544
No 336
>PRK08006 replicative DNA helicase; Provisional
Probab=38.52 E-value=1.3e+02 Score=28.17 Aligned_cols=45 Identities=16% Similarity=0.019 Sum_probs=29.6
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN 168 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~q 168 (209)
.+.=.|||--+|+|||.-++.++..+... ...+++++..-.-..+
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~--~g~~V~~fSlEM~~~q 267 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAML--QDKPVLIFSLEMPGEQ 267 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCeEEEEeccCCHHH
Confidence 33345899999999999999887665432 1345776655433333
No 337
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=38.39 E-value=64 Score=25.72 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHH
Q psy14604 107 AYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLY 145 (209)
Q Consensus 107 ~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~ 145 (209)
+.|..-+. .....+...+++-.+|.|||-..-+++.
T Consensus 12 ~~~~~~l~---~~v~~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 12 PLQAAYLW---LAVEARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHHH---HHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 44555444 3445666778899999999977655543
No 338
>KOG0920|consensus
Probab=38.23 E-value=78 Score=32.41 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCC
Q psy14604 106 HAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH 152 (209)
Q Consensus 106 ~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~ 152 (209)
..++.+-++.+. ++.-.|+.-++|-|||.|+--||+.......
T Consensus 175 ~~~r~~Il~~i~----~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~ 217 (924)
T KOG0920|consen 175 YKMRDTILDAIE----ENQVVVISGETGCGKTTQVPQFILDEAIESG 217 (924)
T ss_pred HHHHHHHHHHHH----hCceEEEeCCCCCCchhhhhHHHHHHHHhcC
Confidence 344555554443 6667899999999999999999988765544
No 339
>CHL00181 cbbX CbbX; Provisional
Probab=37.87 E-value=68 Score=27.88 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=27.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCC-CCcEEEEeCcccHHHH
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHC-KGPFLVSAPLSTIINW 169 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~-~~~~LIV~P~sl~~qW 169 (209)
.+|--..|.|||..|-++...++..+.. .++++.|-...++..|
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~ 106 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQY 106 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHH
Confidence 4788899999999998886665544332 2233433334444444
No 340
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=37.86 E-value=81 Score=26.32 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC--cccHHHHHHHHHH
Q psy14604 112 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP--LSTIINWEREFET 175 (209)
Q Consensus 112 gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P--~sl~~qW~~E~~~ 175 (209)
+|+.|.- ...+...+|-...|.|||.....++...... ..+++.|= ..-+..+.+++..
T Consensus 5 ~ID~l~P-ig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d----~~V~~~iGer~~Ev~~~~~~~~~ 65 (215)
T PF00006_consen 5 AIDLLFP-IGRGQRIGIFGGAGVGKTVLLQEIANNQDAD----VVVYALIGERGREVTEFIEELKG 65 (215)
T ss_dssp HHHHHSC-EETTSEEEEEESTTSSHHHHHHHHHHHCTTT----EEEEEEESECHHHHHHHHHHHHH
T ss_pred eeccccc-cccCCEEEEEcCcccccchhhHHHHhccccc----ceeeeeccccchhHHHHHHHHhh
Confidence 4444432 2344444455557999999888777655221 12444443 4556667777654
No 341
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=37.72 E-value=36 Score=31.66 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.0
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~ 151 (209)
.|-+.+.|.|||..+++++.++...+
T Consensus 5 ~i~~~~s~~GKT~vt~gl~~~l~~~g 30 (433)
T PRK13896 5 VLGGTSSGVGKTVATLATIRALEDAG 30 (433)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHCC
Confidence 35578999999999999999887765
No 342
>KOG0326|consensus
Probab=37.11 E-value=26 Score=31.78 Aligned_cols=86 Identities=17% Similarity=0.081 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHhhcCCCceEEEc-CCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-c---HHHHHHHHHHhCCCc
Q psy14604 106 HAYQLEGINWLRYSWGQNIDTILAD-EMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-T---IINWEREFETWAPDF 180 (209)
Q Consensus 106 ~~~Q~~gv~~l~~~~~~~~g~iLaD-~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l---~~qW~~E~~~~~~~l 180 (209)
-|.|.+++--. -.+.-|||- --|.|||-.-+--++.........=..+|++|.. + .+|-+.|+.++. .+
T Consensus 109 SPiQeesIPia-----LtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~i 182 (459)
T KOG0326|consen 109 SPIQEESIPIA-----LTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-GI 182 (459)
T ss_pred CCcccccccee-----ecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-Ce
Confidence 35566655322 222335544 4699999643222222222211222478999942 2 366888999988 59
Q ss_pred eEEEEEcChhHHHHHhh
Q psy14604 181 YVVTYVGDKDCRIVLRD 197 (209)
Q Consensus 181 ~v~~y~G~~~~r~~i~~ 197 (209)
.|++-+|...-|..|.+
T Consensus 183 ~vmvttGGT~lrDDI~R 199 (459)
T KOG0326|consen 183 KVMVTTGGTSLRDDIMR 199 (459)
T ss_pred EEEEecCCcccccceee
Confidence 99999999888876644
No 343
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=36.99 E-value=33 Score=32.14 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=21.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~ 151 (209)
.|.+-+++.|||+.+.+++..+...+
T Consensus 2 ~I~GT~t~vGKT~v~~~L~~~l~~~G 27 (475)
T TIGR00313 2 MVVGTTSSAGKSTLTAGLCRILARRG 27 (475)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCC
Confidence 36788999999999999988887654
No 344
>PRK08084 DNA replication initiation factor; Provisional
Probab=36.87 E-value=2.3e+02 Score=23.49 Aligned_cols=39 Identities=13% Similarity=-0.066 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhc--CCCceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 110 LEGINWLRYSWG--QNIDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 110 ~~gv~~l~~~~~--~~~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
..++.++..... .....+|.-..|.|||--+.++...+.
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 334555543321 223568888999999988777665544
No 345
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=36.82 E-value=1.7e+02 Score=26.69 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=26.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
-.+|+-..|.|||.-++.+++...... ..++|+++.-
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlE 233 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLE 233 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCc
Confidence 358899999999999999887654421 2357777653
No 346
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=36.62 E-value=64 Score=25.90 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=23.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
+|.+-..|-|||..+..+...+...+ .++|+|
T Consensus 21 ~v~s~kgG~GKTt~a~~LA~~la~~G---~rVllI 52 (204)
T TIGR01007 21 LITSVKPGEGKSTTSANIAVAFAQAG---YKTLLI 52 (204)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHhCC---CeEEEE
Confidence 56667789999999998887766543 246665
No 347
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=36.60 E-value=2.1e+02 Score=24.64 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=18.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
.+|.-..|.|||-++..++..+...
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3456679999999988887666543
No 348
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=36.57 E-value=44 Score=24.13 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=23.6
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI 166 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~ 166 (209)
+|--..|.|||..+-+++..+ ..+++.+....+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhc------ccccccccccccc
Confidence 455678999999888776654 2356666665555
No 349
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=36.52 E-value=46 Score=28.70 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=24.0
Q ss_pred HHHhhcCCCceEEEcCCCCchHHHHHHHHHH
Q psy14604 116 LRYSWGQNIDTILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 116 l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~ 146 (209)
|..+...+...+|.-+.|.|||+.+-.++..
T Consensus 26 l~~l~~~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 26 LDLLLSNGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHCTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHcCCcEEEECCCCCchhHHHHhhhcc
Confidence 3334456667899999999999998887754
No 350
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=36.51 E-value=46 Score=28.50 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=36.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE--eCccc-----------HH----------HHHHHHHHhCCCceEE
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS--APLST-----------II----------NWEREFETWAPDFYVV 183 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV--~P~sl-----------~~----------qW~~E~~~~~~~l~v~ 183 (209)
|.+-==|.|||-.+.++...+...+ .++|+| +|..+ .. .|.+-+.+...++.++
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G---~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~L 82 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLG---ESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDFL 82 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCC---CcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEEE
Confidence 3333448999999999988887654 345554 33221 12 2555555555677777
Q ss_pred EEEcCh
Q psy14604 184 TYVGDK 189 (209)
Q Consensus 184 ~y~G~~ 189 (209)
.|....
T Consensus 83 PfG~l~ 88 (243)
T PF06564_consen 83 PFGQLT 88 (243)
T ss_pred cCCCCC
Confidence 775443
No 351
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=36.50 E-value=1.3e+02 Score=28.11 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=41.0
Q ss_pred hcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHh
Q psy14604 120 WGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 176 (209)
Q Consensus 120 ~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~ 176 (209)
|..+.--|+|.=+|+|||--++.++..+... ...|++|..-.....||..-+-.-
T Consensus 193 ~~~~dLii~AaRP~mGKTafalnia~n~a~~--~~~~v~iFSLEM~~eql~~R~Ls~ 247 (435)
T COG0305 193 FRPGDLIIVAARPGMGKTALALNIALNAAAD--GRKPVAIFSLEMSEEQLVMRLLSS 247 (435)
T ss_pred CccCCEEEEccCCCCChHHHHHHHHHHHHHh--cCCCeEEEEccCCHHHHHHHhhcc
Confidence 3455556899999999999999998777664 345677777777778887766544
No 352
>PRK07004 replicative DNA helicase; Provisional
Probab=36.46 E-value=1e+02 Score=28.76 Aligned_cols=38 Identities=21% Similarity=0.083 Sum_probs=26.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
+.-.|+|--+|+|||.-++.++...... ...|++++..
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~--~~~~v~~fSl 250 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVE--YGLPVAVFSM 250 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHH--cCCeEEEEeC
Confidence 3345889999999999999887665432 1345666655
No 353
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=36.37 E-value=2.2e+02 Score=26.54 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=21.8
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
.|.--.|.|||-++..+...+...+ . .++||+-
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~G--~-kV~lV~~ 136 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRKG--F-KPCLVCA 136 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--C-CEEEEcC
Confidence 4556789999998887776654432 2 3555554
No 354
>PRK10436 hypothetical protein; Provisional
Probab=36.21 E-value=76 Score=29.77 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=28.7
Q ss_pred CchHHHHHHHHHHHhhcCCCc-eEEEcCCCCchHHHHHHHHHHHH
Q psy14604 105 LHAYQLEGINWLRYSWGQNID-TILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g-~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
+-+.|.+.+..+. ....| .+++-.+|.|||-+..++|..+.
T Consensus 202 ~~~~~~~~l~~~~---~~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 202 MTPAQLAQFRQAL---QQPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred cCHHHHHHHHHHH---HhcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 5566776665554 23444 45688999999999888877653
No 355
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=36.14 E-value=41 Score=30.91 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCC----CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 109 QLEGINWLRYSWGQN----IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~----~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
.++|...+..+...+ .+-+|+...|.|||..++++...|-. .-|+..+.-.
T Consensus 32 AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~----~~PF~~isgS 86 (398)
T PF06068_consen 32 AREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGE----DVPFVSISGS 86 (398)
T ss_dssp HHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTT----TS-EEEEEGG
T ss_pred HHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCC----CCCeeEcccc
Confidence 455554444444443 35677999999999999888766532 2366555543
No 356
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=36.06 E-value=90 Score=21.87 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=34.2
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE------------eCcccHHHHHHHHHHhCCCceEEEEEcChhHH
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS------------APLSTIINWEREFETWAPDFYVVTYVGDKDCR 192 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV------------~P~sl~~qW~~E~~~~~~~l~v~~y~G~~~~r 192 (209)
+.+---|.|||..+..+...+...+ .++|+| ||++. ..+...+-.-+ +.-+++...+..+-
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~---~~vl~~d~d~~~d~viiD~p~~~-~~~~~~~l~~a-d~viv~~~~~~~s~ 76 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRG---KRVLLIDLDPQYDYIIIDTPPSL-GLLTRNALAAA-DLVLIPVQPSPLDL 76 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCC---CcEEEEeCCCCCCEEEEeCcCCC-CHHHHHHHHHC-CEEEEeccCCHHHH
Confidence 4445568999999888877775432 234444 55543 33333444333 55555555555444
No 357
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=35.90 E-value=52 Score=27.65 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~ 151 (209)
-.|+...|.|||..+|.-...+...+
T Consensus 8 IflG~apGVGKTy~ML~ea~~l~~~G 33 (211)
T PF02702_consen 8 IFLGAAPGVGKTYAMLQEAHRLKEQG 33 (211)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC
Confidence 57899999999999999888887765
No 358
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.73 E-value=1.4e+02 Score=27.66 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=17.1
Q ss_pred EEEcCCCCchHHHHHHHHHHHH
Q psy14604 127 ILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
+|.-..|.|||-+++.+...+.
T Consensus 225 ~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 225 ALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4566799999998888776654
No 359
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=35.63 E-value=39 Score=31.86 Aligned_cols=23 Identities=30% Similarity=0.216 Sum_probs=20.1
Q ss_pred EEEcCCCCchHHHHHHHHHHHHh
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|-|.+.|.|||..+++++.++..
T Consensus 243 Iagt~Tg~GKT~vt~~L~~al~~ 265 (476)
T PRK06278 243 LLATGSESGKTFLTTSIAGKLRG 265 (476)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHh
Confidence 56889999999999999988765
No 360
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=35.51 E-value=43 Score=30.44 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=26.5
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE-e--CcccHHHH
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS-A--PLSTIINW 169 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV-~--P~sl~~qW 169 (209)
|..--=|.|||.+++.+.+.+...+ ..+||| + |-.-+..|
T Consensus 111 i~n~KGGVGKTT~a~nLA~~LA~~G---~rVLlID~~DpQ~nlt~~ 153 (388)
T PRK13705 111 VAAHKGGVYKTSVSVHLAQDLALKG---LRVLLVEGNDPQGTASMY 153 (388)
T ss_pred EECCCCCchHHHHHHHHHHHHHhcC---CCeEEEcCCCCCCchhhh
Confidence 4445568999999999888776543 347777 3 54434444
No 361
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=35.10 E-value=1.2e+02 Score=28.28 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=34.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHh
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 176 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~ 176 (209)
.-++.-+.|.|||+-++-|++.-.... ..++|.|+-..-..++.+.+..+
T Consensus 23 ~~Li~G~pGsGKT~la~qfl~~g~~~~--ge~~lyvs~eE~~~~l~~~~~~~ 72 (484)
T TIGR02655 23 STLVSGTSGTGKTLFSIQFLYNGIIHF--DEPGVFVTFEESPQDIIKNARSF 72 (484)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEecCHHHHHHHHHHc
Confidence 357788999999999999987643331 23577777656666666665554
No 362
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=35.09 E-value=1.5e+02 Score=21.73 Aligned_cols=64 Identities=14% Similarity=0.032 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHH-HHHHh
Q psy14604 109 QLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWER-EFETW 176 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~-E~~~~ 176 (209)
+.+-+.+|...+...+-++..|+..+|-.... .+...+.. +..-++|+.|.++...|+. |+...
T Consensus 15 ~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~---s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 15 RNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEK---SRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred HHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHH---CcEEEEEECcccccChhHHHHHHHH
Confidence 44556667665555555777777555544433 33333322 2234677777888888888 55554
No 363
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.05 E-value=80 Score=30.03 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=29.8
Q ss_pred CchHHHHHHHHHHHhhcCCCceEE-EcCCCCchHHHHHHHHHHHHhh
Q psy14604 105 LHAYQLEGINWLRYSWGQNIDTIL-ADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g~iL-aD~mGLGKT~q~ia~l~~~~~~ 150 (209)
+.++|...+.-+ .....|-|| .-.+|.|||.+..++|..+...
T Consensus 242 ~~~~~~~~~~~~---~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 242 MSPFQLARLLRL---LNRPQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred CCHHHHHHHHHH---HhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 356666655433 345556544 6789999999999999887654
No 364
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=35.04 E-value=45 Score=30.49 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=21.6
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
|...=-|.|||.+++.+.+.+...+ ..+|||
T Consensus 126 v~n~KGGvGKTTta~nLA~~LA~~G---~rVLlI 156 (405)
T PRK13869 126 VTNFKGGSGKTTTSAHLAQYLALQG---YRVLAV 156 (405)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHhcC---CceEEE
Confidence 3344568999999999887776543 246665
No 365
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=34.76 E-value=63 Score=24.89 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHHhhc--CCCceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 106 HAYQLEGINWLRYSWG--QNIDTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 106 ~~~Q~~gv~~l~~~~~--~~~g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
|..|.+.+.-+..... .....+|--+.|.|||...-+++..+...
T Consensus 5 R~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 5 REEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4455555443322112 22235778899999999988887776665
No 366
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=34.72 E-value=52 Score=29.56 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=26.6
Q ss_pred HHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHH
Q psy14604 114 NWLRYSWGQNIDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 114 ~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
.||..+...+...+++-.+|.|||-..-+++..+
T Consensus 153 ~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 153 AFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HHHHHHHHcCCeEEEECCCCccHHHHHHHHHccc
Confidence 4666666677788999999999998887776544
No 367
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=34.58 E-value=75 Score=27.15 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=13.4
Q ss_pred ceEEEcCCCCchHHHH
Q psy14604 125 DTILADEMGLGKTIQT 140 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ 140 (209)
..||.-..|+|||--|
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 5899999999998644
No 368
>PRK06321 replicative DNA helicase; Provisional
Probab=34.58 E-value=1.7e+02 Score=27.45 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=31.7
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
.+.=.|||--+|+|||.-++.++..+.... ..+++++..-.-..++...
T Consensus 225 ~G~LiiiaarPgmGKTafal~ia~~~a~~~--g~~v~~fSLEMs~~ql~~R 273 (472)
T PRK06321 225 PSNLMILAARPAMGKTALALNIAENFCFQN--RLPVGIFSLEMTVDQLIHR 273 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhc--CCeEEEEeccCCHHHHHHH
Confidence 333458999999999999998766553221 3467777664444444433
No 369
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=34.49 E-value=48 Score=29.60 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=17.5
Q ss_pred CCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 133 GLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 133 GLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
|.|||-++.|+...+...+ .+ +|||
T Consensus 12 GVGKTT~aaA~A~~lA~~g--~k-vLlv 36 (322)
T COG0003 12 GVGKTTIAAATAVKLAESG--KK-VLLV 36 (322)
T ss_pred cccHHHHHHHHHHHHHHcC--Cc-EEEE
Confidence 6799999988776666655 33 5544
No 370
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=34.41 E-value=73 Score=29.99 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=29.3
Q ss_pred CchHHHHHHHHHHHhhcCCCc-eEEEcCCCCchHHHHHHHHHHHH
Q psy14604 105 LHAYQLEGINWLRYSWGQNID-TILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g-~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
+-+.|.+.+.++. ....| .++.-.+|.|||-+..+++..+.
T Consensus 226 ~~~~~~~~l~~~~---~~~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 226 MSPELLSRFERLI---RRPHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCHHHHHHHHHHH---hcCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 5567777776654 34444 46788999999999888776553
No 371
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=34.31 E-value=89 Score=25.02 Aligned_cols=33 Identities=9% Similarity=0.247 Sum_probs=26.6
Q ss_pred HHHHHHHHhhcCCCceEEEcCCCCchHHHHHHH
Q psy14604 111 EGINWLRYSWGQNIDTILADEMGLGKTIQTITF 143 (209)
Q Consensus 111 ~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~ 143 (209)
+.+.|+......+...++.--+|+|-|-++++.
T Consensus 93 ~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA 125 (180)
T COG2453 93 KIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAA 125 (180)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHH
Confidence 567788888888776666667899999999983
No 372
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=34.21 E-value=48 Score=30.18 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=22.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
|..-==|.|||..++.+.+.+...+ ..+|||
T Consensus 111 v~n~KGGVGKTTta~nLA~~LA~~G---~rVLlI 141 (387)
T PHA02519 111 VMSHKGGVYKTSSAVHTAQWLALQG---HRVLLI 141 (387)
T ss_pred EecCCCCCcHHHHHHHHHHHHHhCC---CcEEEE
Confidence 4444568999999999887776543 247766
No 373
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=34.10 E-value=89 Score=25.27 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=19.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
.++.-+.|.|||.-++.++.....
T Consensus 22 ~~i~G~~GsGKT~l~~~~a~~~~~ 45 (218)
T cd01394 22 TQVYGPPGTGKTNIAIQLAVETAG 45 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 467789999999999999876643
No 374
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=34.08 E-value=65 Score=31.26 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|...++.|.+.+..+. ..||.-..|+|||..+..+...+..
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 6666666666665554 4678889999999999998877653
No 375
>PRK11823 DNA repair protein RadA; Provisional
Probab=33.97 E-value=1.3e+02 Score=27.88 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=32.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 176 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~ 176 (209)
.+|.-++|.|||.-++.++...... ..++|.|.-.....|......++
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ees~~qi~~ra~rl 130 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEESASQIKLRAERL 130 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccccHHHHHHHHHHc
Confidence 4778899999999999988766532 23566666555555554444443
No 376
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=33.85 E-value=83 Score=24.14 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=21.4
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
|..---|.|||..++.+...+...+ .++|+|
T Consensus 4 v~~~kgG~GKtt~a~~la~~l~~~g---~~vllv 34 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTALAQLG---YKVVLI 34 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCC---CeEEEE
Confidence 3444458999999998887776543 346766
No 377
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=33.37 E-value=73 Score=31.28 Aligned_cols=41 Identities=17% Similarity=0.083 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|...+..|.+.+..+. ..||.-..|.|||..+..|...+.-
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 5555555655555543 2478899999999999988776654
No 378
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=33.16 E-value=1.7e+02 Score=25.70 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=39.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhCCCc-eEEEEEcChhHHHHHh
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDF-YVVTYVGDKDCRIVLR 196 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~~l-~v~~y~G~~~~r~~i~ 196 (209)
.-||--+-|.|||+..+.+++.....+ -||++..-...|.+.-..+.++- +-..|.-+......++
T Consensus 25 r~vL~G~~GsGKS~~L~q~~~~A~~~~------wiVl~vp~a~~~~~~~~~~~~~~~~~~~~~qP~~a~~~L~ 91 (309)
T PF10236_consen 25 RYVLTGERGSGKSVLLAQAVHYARENG------WIVLYVPSAQDWVNGTTDYAPSPYNPGLYDQPMYAAKWLK 91 (309)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC------EEEEEcCCHHHHhhCCeeEeeCCCCCCeeecHHHHHHHHH
Confidence 568888999999998887776655543 23334344555665544444433 5555555555554443
No 379
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=33.03 E-value=75 Score=26.14 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=21.3
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
|..---|.|||..++.+...+...+ .++|+|
T Consensus 6 v~s~kGGvGKTt~a~~lA~~la~~g---~~vlli 36 (261)
T TIGR01968 6 ITSGKGGVGKTTTTANLGTALARLG---KKVVLI 36 (261)
T ss_pred EecCCCCccHHHHHHHHHHHHHHcC---CeEEEE
Confidence 4455568999999999887776543 235554
No 380
>KOG1806|consensus
Probab=32.94 E-value=1.5e+02 Score=30.97 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHH
Q psy14604 107 AYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREF 173 (209)
Q Consensus 107 ~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~ 173 (209)
|-|.+++.-- .+.+--..+-..|+|||..+.-+|..+++.....+..+|+....-+.+=.+.+
T Consensus 741 ~~qveai~sg----~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi 803 (1320)
T KOG1806|consen 741 PTQVEAILSG----MQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKI 803 (1320)
T ss_pred HHHHHHHHhc----CCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHH
Confidence 4688876311 13334566788999999999999988887766655444444444444444443
No 381
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=32.93 E-value=1.5e+02 Score=27.67 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=33.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHh
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETW 176 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~ 176 (209)
-.+|+-+.|.|||+-++.|++...... ..++|.|.-..-..+-.+.+..+
T Consensus 33 ~~li~G~pGsGKT~l~~qf~~~~~~~~--ge~~lyis~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 33 PTLVSGTAGTGKTLFALQFLVNGIKRF--DEPGVFVTFEESPEDIIRNVASF 82 (509)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCEEEEEccCCHHHHHHHHHHc
Confidence 357788999999999999987655441 24577776655555544444443
No 382
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=32.92 E-value=54 Score=28.58 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=15.6
Q ss_pred CCCchHHHHHHHHHHHHhh
Q psy14604 132 MGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 132 mGLGKT~q~ia~l~~~~~~ 150 (209)
-|.|||.+++.+.+.+...
T Consensus 9 GGvGKTT~a~nLA~~La~~ 27 (296)
T TIGR02016 9 GGSGKSFTTTNLSHMMAEM 27 (296)
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 4789999999988777654
No 383
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=32.86 E-value=1.4e+02 Score=27.87 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
.++.-+.|.|||.-++-|++.....
T Consensus 266 ~li~G~~G~GKt~l~~~f~~~~~~~ 290 (484)
T TIGR02655 266 ILATGATGTGKTLLVSKFLENACAN 290 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5788999999999999998877554
No 384
>PRK10263 DNA translocase FtsK; Provisional
Probab=32.79 E-value=1.6e+02 Score=31.45 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=36.9
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHhhCCCC-CcEEEEeCcccHHHHHHHHHHh--CCCceEEEE
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFKEGHCK-GPFLVSAPLSTIINWEREFETW--APDFYVVTY 185 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~-~~~LIV~P~sl~~qW~~E~~~~--~~~l~v~~y 185 (209)
...++|-.+|.|||+..-++|+++....... -.+++|=|..+ ||..| +|++...+.
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~v------ELs~ye~LPHl~~~Vv 1069 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKML------ELSVYEGIPHLLTEVV 1069 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCcc------chhhhccCccccceee
Confidence 4578899999999999999998876543322 23566666642 55554 366543333
No 385
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=32.74 E-value=80 Score=25.86 Aligned_cols=31 Identities=32% Similarity=0.278 Sum_probs=20.9
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
+..---|.|||..++.+.+.+...+ .++|+|
T Consensus 5 v~~~KGGvGKTt~a~~LA~~la~~g---~~Vlli 35 (251)
T TIGR01969 5 IASGKGGTGKTTITANLGVALAKLG---KKVLAL 35 (251)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCC---CeEEEE
Confidence 3344458899999988887776543 246665
No 386
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.73 E-value=79 Score=29.94 Aligned_cols=39 Identities=26% Similarity=0.248 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
|...+..|.+.+..+. ..||.-..|.|||..|..+...+
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH
Confidence 5555555655554443 56888999999999887776554
No 387
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=32.34 E-value=85 Score=27.53 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
+.+.+.-+...+-.+...+|-+..|+|||.-+=++...+
T Consensus 29 ~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l 67 (329)
T COG0714 29 DEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARAL 67 (329)
T ss_pred cHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHh
Confidence 444444444445577889999999999999887776554
No 388
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=32.29 E-value=1.8e+02 Score=26.97 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=19.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
..+|--+.|+|||.-+-|+...+..
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~ 167 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIES 167 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHH
Confidence 4667889999999888777665543
No 389
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=32.20 E-value=1.3e+02 Score=26.70 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=28.7
Q ss_pred chHHHHHHH-HHHHhhc--CCCceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 106 HAYQLEGIN-WLRYSWG--QNIDTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 106 ~~~Q~~gv~-~l~~~~~--~~~g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
|.-|.+-+. ++..... .....+|.-..|.|||..+-.++..+...
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 455555443 3333222 22347888899999999999888766544
No 390
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=32.15 E-value=44 Score=30.90 Aligned_cols=42 Identities=14% Similarity=-0.060 Sum_probs=31.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
+.+|--..|.|||+++=++...+ .-++++|-...|..-|.-|
T Consensus 150 gllL~GPPGcGKTllAraiA~el------g~~~i~vsa~eL~sk~vGE 191 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKM------GIEPIVMSAGELESENAGE 191 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHc------CCCeEEEEHHHhhcCcCCc
Confidence 56677899999999998776554 2246777777788778766
No 391
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=31.97 E-value=88 Score=23.20 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=17.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHH
Q psy14604 126 TILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
.||.-+.|.|||..+-.+...+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4677789999999887776555
No 392
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=31.92 E-value=1.8e+02 Score=22.47 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=32.1
Q ss_pred EEcCCCCchHHHHHHHHHHHHhhCCCCCcEE-----EEeC-cccHHHHHHHHHHhC
Q psy14604 128 LADEMGLGKTIQTITFLYSLFKEGHCKGPFL-----VSAP-LSTIINWEREFETWA 177 (209)
Q Consensus 128 LaD~mGLGKT~q~ia~l~~~~~~~~~~~~~L-----IV~P-~sl~~qW~~E~~~~~ 177 (209)
+.-..|.|||..+=.+...++..+....-+. .-+| ..-+.+-+.+|..|.
T Consensus 58 fHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I 113 (127)
T PF06309_consen 58 FHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWI 113 (127)
T ss_pred eecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHH
Confidence 4558999999998777777777654333222 2334 344566777777774
No 393
>PRK05636 replicative DNA helicase; Provisional
Probab=31.89 E-value=1.6e+02 Score=27.89 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=25.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
.|||--.|+|||.-++.++....... ..+++++..-
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~--g~~v~~fSlE 303 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKH--NKASVIFSLE 303 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEee
Confidence 48899999999999998876544321 2467777553
No 394
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=31.82 E-value=83 Score=28.80 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCC------------CceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQN------------IDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~------------~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|...+..|......+ .+-+|.-..|.|||..+.+|...+.-
T Consensus 10 q~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 10 QEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred hHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 555555555554443 23568889999999999998776654
No 395
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.73 E-value=84 Score=29.50 Aligned_cols=39 Identities=23% Similarity=0.104 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 110 LEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 110 ~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
...+..|......+. ..||.-..|.|||..|-++...+.
T Consensus 20 ~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 20 DHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 333444444444443 358899999999999988876654
No 396
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=31.66 E-value=2.1e+02 Score=30.56 Aligned_cols=51 Identities=29% Similarity=0.294 Sum_probs=31.8
Q ss_pred cCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe--C-----cccHHHHHHHHHH
Q psy14604 121 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA--P-----LSTIINWEREFET 175 (209)
Q Consensus 121 ~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~--P-----~sl~~qW~~E~~~ 175 (209)
..+.-.|++-++|.|||.|.=.+++.+ +... ..+|+| | .++..+-.+|+..
T Consensus 87 ~~~~VviI~GeTGSGKTTqlPq~lle~---g~g~-~g~I~~TQPRRlAArsLA~RVA~El~~ 144 (1294)
T PRK11131 87 RDHQVVIVAGETGSGKTTQLPKICLEL---GRGV-KGLIGHTQPRRLAARTVANRIAEELET 144 (1294)
T ss_pred HhCCeEEEECCCCCCHHHHHHHHHHHc---CCCC-CCceeeCCCcHHHHHHHHHHHHHHHhh
Confidence 366678889999999999855454432 1111 124444 4 2666777777764
No 397
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=31.52 E-value=2.1e+02 Score=28.26 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhcC--CCceEEEcCCCCchHHHHHHHHHHHHhhCCC---CCcEEEEeCc-ccH------HHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQ--NIDTILADEMGLGKTIQTITFLYSLFKEGHC---KGPFLVSAPL-STI------INWEREFETW 176 (209)
Q Consensus 109 Q~~gv~~l~~~~~~--~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~---~~~~LIV~P~-sl~------~qW~~E~~~~ 176 (209)
|..-+..+...+.. ....||--+.|.|||..+-++...+...... ....++.... +++ .+|+..+..+
T Consensus 187 r~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i 266 (731)
T TIGR02639 187 REDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAV 266 (731)
T ss_pred cHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHH
Confidence 33334445444433 3367888899999999988877665443211 1233444442 332 2577777666
Q ss_pred C
Q psy14604 177 A 177 (209)
Q Consensus 177 ~ 177 (209)
+
T Consensus 267 ~ 267 (731)
T TIGR02639 267 V 267 (731)
T ss_pred H
Confidence 5
No 398
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=31.45 E-value=2.6e+02 Score=22.07 Aligned_cols=50 Identities=14% Similarity=0.251 Sum_probs=28.9
Q ss_pred HHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHH
Q psy14604 117 RYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 169 (209)
Q Consensus 117 ~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW 169 (209)
..........+|--|.|.||++.|=++ +. ...+..+|++.|--..+-..+
T Consensus 16 ~~~a~~~~pVlI~GE~GtGK~~lA~~I-H~--~s~r~~~pfi~vnc~~~~~~~ 65 (168)
T PF00158_consen 16 KRAASSDLPVLITGETGTGKELLARAI-HN--NSPRKNGPFISVNCAALPEEL 65 (168)
T ss_dssp HHHTTSTS-EEEECSTTSSHHHHHHHH-HH--CSTTTTS-EEEEETTTS-HHH
T ss_pred HHHhCCCCCEEEEcCCCCcHHHHHHHH-HH--hhhcccCCeEEEehhhhhcch
Confidence 333344556788999999999976433 22 122234688877666665443
No 399
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=31.32 E-value=1.1e+02 Score=24.89 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=20.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
..+.-..|.|||.-++.++......
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~ 50 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKN 50 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4778899999999999998766543
No 400
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=31.21 E-value=1.8e+02 Score=26.81 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=21.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
..+|--..|+|||.-+-++...+...
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~ 175 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEK 175 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 36778899999999998887776554
No 401
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=31.14 E-value=76 Score=29.28 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=20.3
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
+.|.+++-..|.|||..|+++...|
T Consensus 65 GrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 65 GRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred ccEEEEECCCCCcHHHHHHHHHHHh
Confidence 3456779999999999998887665
No 402
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=31.12 E-value=1.4e+02 Score=24.95 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=16.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHHH
Q psy14604 126 TILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
..|.-.-|+|||..|..++....
T Consensus 22 v~I~G~~G~GKT~LA~~~~~~~~ 44 (287)
T PF00931_consen 22 VAIVGMGGIGKTTLARQVARDLR 44 (287)
T ss_dssp EEEEESTTSSHHHHHHHHHCHHH
T ss_pred EEEEcCCcCCcceeeeecccccc
Confidence 34455679999999988876644
No 403
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function.
Probab=30.94 E-value=1.6e+02 Score=30.82 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=38.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhCC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAP 178 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~ 178 (209)
.|+|- .|.|||-..+.-|..+........+.++|+|...--+=+..+..-.+
T Consensus 5 fi~G~-aGSGKT~~l~~ri~~~l~~~~~~~~~illVPeq~TF~~e~rl~~~~~ 56 (1158)
T TIGR02773 5 FIYGR-AGTGKSTFCIDEIKQKIKENPLGKPIILIVPDQMTFQMEQALLNDIE 56 (1158)
T ss_pred EEEeC-CCCChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccHHHHHHHHHhcc
Confidence 35554 69999999999998888776566779999997765555666665543
No 404
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=30.89 E-value=98 Score=24.65 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=18.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHHH
Q psy14604 126 TILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
.+|+-..|.|||-.+-++...++
T Consensus 6 ~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 6 FLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 57888999999998877766665
No 405
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=30.87 E-value=38 Score=27.18 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
|+..+ .-+...+....++|++. ..|.|||.+..
T Consensus 9 f~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~ 42 (186)
T cd01363 9 FRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTME 42 (186)
T ss_pred HHHHH-HHHHHHhCCcceeEEEECCCCCcceEecC
Confidence 44444 34444455555788877 78999996654
No 406
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=30.75 E-value=1.2e+02 Score=22.73 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=24.0
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
++++-.-|.|||..++.+...+...+. .+|+|-
T Consensus 4 ~v~s~~~g~G~t~~a~~lA~~la~~~~---~Vllid 36 (157)
T PF13614_consen 4 AVWSPKGGVGKTTLALNLAAALARKGK---KVLLID 36 (157)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTT----EEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhcCC---CeEEEE
Confidence 466667799999999998877766642 266664
No 407
>KOG0651|consensus
Probab=30.74 E-value=50 Score=29.88 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=27.5
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN 168 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~q 168 (209)
-..||+|--..|.|||+++=++...+- .- +|+|+-..++.-
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg-----~n-fl~v~ss~lv~k 205 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMG-----VN-FLKVVSSALVDK 205 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcC-----Cc-eEEeeHhhhhhh
Confidence 344789999999999999987765541 12 455555444443
No 408
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=30.69 E-value=64 Score=31.78 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=32.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
..|.+|.-..|.|||..+-++...+ ..+++.|-+..++..|..|
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l~~~~vGe 530 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEILSKWVGE 530 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHhhcccCc
Confidence 3456778899999999887775442 2467888888888878544
No 409
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=30.63 E-value=95 Score=25.41 Aligned_cols=30 Identities=30% Similarity=0.328 Sum_probs=20.5
Q ss_pred EEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 128 LADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 128 LaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
..---|.|||..++.+.+.+...+ .++|+|
T Consensus 7 ~s~KGGvGKTt~a~nla~~la~~g---~~Vlli 36 (246)
T TIGR03371 7 VGVKGGVGKTTLTANLASALKLLG---EPVLAI 36 (246)
T ss_pred EeCCCCccHHHHHHHHHHHHHhCC---CcEEEE
Confidence 344458999999999887776543 235555
No 410
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=30.57 E-value=89 Score=27.21 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
|...++-|......+. ..+|.-+.|.|||..+.++...+.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5555555554444443 347789999999999888877764
No 411
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=30.56 E-value=88 Score=29.10 Aligned_cols=41 Identities=22% Similarity=0.119 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|...+.+|......+. ..||.-+.|.|||..+.++...+..
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 6667777766665543 3577889999999999999877754
No 412
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=30.53 E-value=2.9e+02 Score=25.02 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=31.9
Q ss_pred CCCchHHHHHHHH-HHHhhcCCC--ceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 103 MQLHAYQLEGINW-LRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 103 ~~L~~~Q~~gv~~-l~~~~~~~~--g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
..-|.-|...+.. +...+..+. ..++--..|.|||.++-.++-.+...
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 4567778876653 333332222 36777889999999998887666554
No 413
>KOG0084|consensus
Probab=30.36 E-value=1.9e+02 Score=24.19 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHHhCCCceEEEEEcChhH
Q psy14604 164 STIINWEREFETWAPDFYVVTYVGDKDC 191 (209)
Q Consensus 164 sl~~qW~~E~~~~~~~l~v~~y~G~~~~ 191 (209)
..+.+|..|+.+++.+-...+..|.+..
T Consensus 98 ~~v~~Wi~Ei~~~~~~~v~~lLVGNK~D 125 (205)
T KOG0084|consen 98 NNVKRWIQEIDRYASENVPKLLVGNKCD 125 (205)
T ss_pred hhHHHHHHHhhhhccCCCCeEEEeeccc
Confidence 3578899999999866556666666643
No 414
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=30.36 E-value=1.4e+02 Score=27.19 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=20.7
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
..+..+++-.+|.|||-..-+++..+.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344467899999999998888776654
No 415
>PRK08727 hypothetical protein; Validated
Probab=30.20 E-value=2.2e+02 Score=23.67 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=19.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
.+|.-..|.|||--+.|+...+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 6778889999998888877666544
No 416
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=29.80 E-value=1.1e+02 Score=29.43 Aligned_cols=40 Identities=20% Similarity=0.088 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHHHhhcCCCce-EEEcCCCCchHHHHHHHHHHH
Q psy14604 105 LHAYQLEGINWLRYSWGQNIDT-ILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~g~-iLaD~mGLGKT~q~ia~l~~~ 147 (209)
+.+.|.+.+..+. ....|. +++-.+|.|||-+..+++..+
T Consensus 300 ~~~~~~~~l~~~~---~~~~Glilv~G~tGSGKTTtl~a~l~~~ 340 (564)
T TIGR02538 300 FEPDQKALFLEAI---HKPQGMVLVTGPTGSGKTVSLYTALNIL 340 (564)
T ss_pred CCHHHHHHHHHHH---HhcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 5566766665554 344454 578899999999987877655
No 417
>KOG0086|consensus
Probab=29.72 E-value=3.1e+02 Score=22.33 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHhCCCceEEEEEcChhHHHHHhh
Q psy14604 165 TIINWEREFETWAPDFYVVTYVGDKDCRIVLRD 197 (209)
Q Consensus 165 l~~qW~~E~~~~~~~l~v~~y~G~~~~r~~i~~ 197 (209)
.+.||-..+...+|.--|++..|+++.-..-++
T Consensus 99 aLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~ 131 (214)
T KOG0086|consen 99 ALTNWLTDARTLASPNIVVILCGNKKDLDPERE 131 (214)
T ss_pred HHHHHHHHHHhhCCCcEEEEEeCChhhcChhhh
Confidence 588999999999987788888999876544443
No 418
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=29.62 E-value=3e+02 Score=26.97 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=19.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
.+|.-..|+|||--+.|+...+..
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~ 340 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARR 340 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 677888999999988887766654
No 419
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.43 E-value=85 Score=29.75 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
|...+..|.+....+. .-+|.-..|.|||..+..+...+.
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 5555556655554433 347888999999999888877664
No 420
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.13 E-value=91 Score=30.90 Aligned_cols=40 Identities=18% Similarity=0.083 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
|...+..|.+.+..+. ..||....|.|||..|.++...+.
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4444555555444443 458899999999999888876653
No 421
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.97 E-value=91 Score=30.42 Aligned_cols=41 Identities=20% Similarity=0.123 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|...+..|...+..+. .-||.-..|.|||..|..|...+.-
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6667777766665543 4578889999999999988777643
No 422
>PF11323 DUF3125: Protein of unknown function (DUF3125); InterPro: IPR021472 This family of proteins with unknown function appears to be restricted to Staphylococcus.
Probab=28.89 E-value=18 Score=23.32 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=21.4
Q ss_pred EEEEeC-cc--cHHHHHHHHHHhCCCceEEEEE
Q psy14604 157 FLVSAP-LS--TIINWEREFETWAPDFYVVTYV 186 (209)
Q Consensus 157 ~LIV~P-~s--l~~qW~~E~~~~~~~l~v~~y~ 186 (209)
.|.+|| ++ ++.+|+..|...-|+...+.|.
T Consensus 6 nLfr~~~p~~~~~~~~e~~fS~Lga~~q~a~yc 38 (50)
T PF11323_consen 6 NLFRCPTPTCIVCRNWESNFSMLGAHFQSANYC 38 (50)
T ss_pred ccccCCCCceeeeeeecccchhhccccceeeeE
Confidence 466666 34 5789999988877776666654
No 423
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=28.62 E-value=1.2e+02 Score=26.01 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=26.8
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
.-..++.--.|.|||.-.+.+|..+...- ..+++++|
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f---~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKF---DHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccC---CEEEEEec
Confidence 33677778899999999999887654432 44666677
No 424
>PRK13768 GTPase; Provisional
Probab=28.60 E-value=1e+02 Score=26.12 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=18.4
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
+++-..|.|||..+..+...+...
T Consensus 6 ~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 6 FFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEECCCCccHHHHHHHHHHHHHhc
Confidence 445568999999998888777554
No 425
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.54 E-value=1.4e+02 Score=30.03 Aligned_cols=79 Identities=16% Similarity=0.095 Sum_probs=37.2
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cc---cHHHHHHHHHHhCCCceEEEEEcChhHHHHH---hhhc
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LS---TIINWEREFETWAPDFYVVTYVGDKDCRIVL---RDHD 199 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~s---l~~qW~~E~~~~~~~l~v~~y~G~~~~r~~i---~~~~ 199 (209)
.|.-..|.|||-++.-+...+.... ....+.+|.- .. .+.||..-.+.. ++.+.+......-...+ ..++
T Consensus 189 ~lVGpnGvGKTTTiaKLA~~~~~~~-G~kkV~lit~Dt~RigA~eQL~~~a~~~--gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 189 ALVGPTGVGKTTTTAKLAARCVARE-GADQLALLTTDSFRIGALEQLRIYGRIL--GVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred EEECCCCCcHHHHHHHHHhhHHHHc-CCCeEEEecCcccchHHHHHHHHHHHhC--CCCccccCCHHHHHHHHHHhcCCC
Confidence 4577899999977665554432221 1223444444 22 456664433332 23333322222222323 3345
Q ss_pred eeccCcCCC
Q psy14604 200 ISWEDTANR 208 (209)
Q Consensus 200 ~~~~~~~~r 208 (209)
+-+.|.+-|
T Consensus 266 ~VLIDTAGR 274 (767)
T PRK14723 266 LVLIDTVGM 274 (767)
T ss_pred EEEEeCCCC
Confidence 556665543
No 426
>CHL00175 minD septum-site determining protein; Validated
Probab=28.53 E-value=98 Score=26.22 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=22.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
+|.+---|.|||..+..+.+++...+ .++|||
T Consensus 19 ~v~s~KGGvGKTt~a~nLA~~La~~g---~~vlli 50 (281)
T CHL00175 19 VITSGKGGVGKTTTTANLGMSIARLG---YRVALI 50 (281)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhCC---CeEEEE
Confidence 45566778999999999887776543 236655
No 427
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=28.52 E-value=98 Score=30.16 Aligned_cols=40 Identities=23% Similarity=0.091 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
|...+..|...+..+. .-|+.-..|.|||..|.++...+.
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4445555555544432 357889999999999999887764
No 428
>KOG0731|consensus
Probab=28.51 E-value=93 Score=31.19 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=19.6
Q ss_pred CCCceEEEcCCCCchHHHHHHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFL 144 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l 144 (209)
-..|+||.-..|.|||+-|-|+.
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiA 365 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIA 365 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHh
Confidence 34588999999999999988875
No 429
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.40 E-value=3.9e+02 Score=23.10 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=28.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC----cccHHHHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP----LSTIINWEREFET 175 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P----~sl~~qW~~E~~~ 175 (209)
...|.-..|.|||.....+...+...+ ..+.+|+- ...+.||......
T Consensus 77 ~i~~~G~~g~GKTtl~~~l~~~l~~~~---~~v~~i~~D~~ri~~~~ql~~~~~~ 128 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQDYVKT 128 (270)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEecCCCCHHHHHHHHHHhhh
Confidence 345566799999988776665554322 23444444 2466777654443
No 430
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=28.09 E-value=37 Score=28.58 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=19.0
Q ss_pred CCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 131 EMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 131 ~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
=-|.|||.+++.+.+.+...+ ++|||
T Consensus 10 KGGvGKTT~a~nLA~~La~~G----rVLli 35 (264)
T PRK13231 10 KGGIGKSTTVSNMAAAYSNDH----RVLVI 35 (264)
T ss_pred CCCCcHHHHHHHHhcccCCCC----EEEEE
Confidence 458899999998887775432 46666
No 431
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=27.97 E-value=1.2e+02 Score=26.63 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
|..++..|......+. .-++.-..|.||+..+.+|...++-.
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6666666766665553 56778899999999999998887654
No 432
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=27.96 E-value=82 Score=23.82 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=19.3
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
++.-..|.|||..++.++..+...
T Consensus 3 ~~~~~~~~Gkt~~~~~l~~~l~~~ 26 (134)
T cd03109 3 GFGTGTDIGKTVATAILARALKEK 26 (134)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHC
Confidence 455578899999999999887654
No 433
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=27.87 E-value=1.2e+02 Score=24.89 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=21.7
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
+++--.|.|||..+.++...+...+ ..+|+|
T Consensus 3 ~~~g~~g~Gkt~~~~~la~~~a~~g---~~~~l~ 33 (217)
T cd02035 3 FFTGKGGVGKTTIAAATAVRLAEEG---KKVLLV 33 (217)
T ss_pred EEeCCCCchHHHHHHHHHHHHHHCC---CcEEEE
Confidence 4556789999999988877766543 235554
No 434
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=27.82 E-value=2.7e+02 Score=27.34 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhCCCCCcEEEEeCcc---------cHHHHHHHHHHhCCCceEEEEEcC--hhHHHHH
Q psy14604 139 QTITFLYSLFKEGHCKGPFLVSAPLS---------TIINWEREFETWAPDFYVVTYVGD--KDCRIVL 195 (209)
Q Consensus 139 q~ia~l~~~~~~~~~~~~~LIV~P~s---------l~~qW~~E~~~~~~~l~v~~y~G~--~~~r~~i 195 (209)
.++.++...... ...++|+||.- -+....+++...++++.|..+||. ..+|..+
T Consensus 459 ~~~~~i~~~~~~---g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i 523 (681)
T PRK10917 459 EVYERIREEIAK---GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAV 523 (681)
T ss_pred HHHHHHHHHHHc---CCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHH
Confidence 344444443322 34699999942 134466667777777999999999 4455443
No 435
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=27.82 E-value=1.2e+02 Score=27.14 Aligned_cols=39 Identities=15% Similarity=0.062 Sum_probs=25.3
Q ss_pred HHHHHHHHH-HhhcCC-CceEEEcCCCCchHHHHHHHHHHH
Q psy14604 109 QLEGINWLR-YSWGQN-IDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 109 Q~~gv~~l~-~~~~~~-~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
|.+.+.-|. .....+ ++.+|-...|+|||..+=++...+
T Consensus 13 q~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 13 QEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 555555443 233234 567889999999999886664433
No 436
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=27.75 E-value=2.4e+02 Score=25.44 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=20.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
..+|--..|+|||.-+.++...+...
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 34678899999999998887776554
No 437
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=27.74 E-value=98 Score=26.41 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=16.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHH
Q psy14604 126 TILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
.++.-.+|.|||-.+|++....
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~ 25 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKT 25 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 3677889999999999886543
No 438
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=27.52 E-value=1.1e+02 Score=27.00 Aligned_cols=67 Identities=21% Similarity=0.198 Sum_probs=32.5
Q ss_pred ceEEEcCCCC----------chHHHHHHHHHHHH-hh---CCCCCcEEEEeCcccHHHHHH--HHHHh---CCCceEEEE
Q psy14604 125 DTILADEMGL----------GKTIQTITFLYSLF-KE---GHCKGPFLVSAPLSTIINWER--EFETW---APDFYVVTY 185 (209)
Q Consensus 125 g~iLaD~mGL----------GKT~q~ia~l~~~~-~~---~~~~~~~LIV~P~sl~~qW~~--E~~~~---~~~l~v~~y 185 (209)
-+||.||++. +..-++.+-|.... .. ......-||+||..=...|.. .+..+ ++.--.+.+
T Consensus 108 FailfDDi~~~~~~~~~~~~~~~~~~q~~l~n~v~~~l~~~~~~~~~l~~cPt~Y~~~~~~~~Yl~~l~~~L~~~i~i~W 187 (306)
T PF07555_consen 108 FAILFDDIDGDLWHCDKDDFNSLAQAQARLLNRVNKELIKKKGDVKPLIFCPTEYCGDWASPEYLRTLGEQLDPDIQIFW 187 (306)
T ss_dssp EEEE-TS-SSC--TTTTTT-SCHHHHHHHHHHHHHHHTTTCSSSS--EEEE-SS-SCHHHCCHHHHHHHHHS-TTSEEEE
T ss_pred EEEeecCCCCccccccccccchHHHHHHHHHHHHHHHHhccCCCCCCceEEChhhcCCCCChHHHHHHHhhCCCCCEEEE
Confidence 3899999995 45555444333322 22 111112499999766666553 34444 455566778
Q ss_pred EcChhH
Q psy14604 186 VGDKDC 191 (209)
Q Consensus 186 ~G~~~~ 191 (209)
+|..-.
T Consensus 188 TG~~V~ 193 (306)
T PF07555_consen 188 TGPKVC 193 (306)
T ss_dssp -CSSSS
T ss_pred cCCcee
Confidence 887543
No 439
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=27.47 E-value=1.3e+02 Score=24.15 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=23.2
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
..+.-+.|.|||.-++.++......+ .+++.|.-
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g---~~v~yi~~ 48 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQG---KKVVYIDT 48 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 46677899999999998887665432 23444444
No 440
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=27.47 E-value=1.2e+02 Score=27.41 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=25.7
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE--eCcccHHHH
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS--APLSTIINW 169 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV--~P~sl~~qW 169 (209)
|..---|.|||..++.+.+.+...+ ..+|+| -|-.-+..|
T Consensus 109 v~n~KGGvGKTT~a~nLA~~La~~G---~rVLlID~DpQ~~ls~~ 150 (387)
T TIGR03453 109 VTNFKGGSGKTTTAAHLAQYLALRG---YRVLAIDLDPQASLSAL 150 (387)
T ss_pred EEccCCCcCHHHHHHHHHHHHHhcC---CCEEEEecCCCCCHHHH
Confidence 3345669999999999887776543 236555 344444445
No 441
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=27.44 E-value=1.9e+02 Score=30.16 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=31.1
Q ss_pred CCCchHHHHHHH-HHHHhhcC-CC-ceE-EEcCCCCchHHHHHHHHHHHH
Q psy14604 103 MQLHAYQLEGIN-WLRYSWGQ-NI-DTI-LADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 103 ~~L~~~Q~~gv~-~l~~~~~~-~~-g~i-LaD~mGLGKT~q~ia~l~~~~ 148 (209)
+.-|.-|.+.|. +|...... +. .+| |.-.+|.|||.++-.++..+.
T Consensus 757 LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 757 LPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 445777777765 45444432 22 243 788999999999999876654
No 442
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=27.34 E-value=1.7e+02 Score=28.17 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=47.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCC-CcEE-EEeCcccHHHHHHHHHHhCCC--
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCK-GPFL-VSAPLSTIINWEREFETWAPD-- 179 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~-~~~L-IV~P~sl~~qW~~E~~~~~~~-- 179 (209)
.|-+-|.++|.+. .+ .+++--..|.|||-+...=+..+....... .-+| |-+..-....-...+...+..
T Consensus 2 ~Ln~~Q~~av~~~-----~g-p~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~~~~ 75 (655)
T COG0210 2 KLNPEQREAVLHP-----DG-PLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLGLPA 75 (655)
T ss_pred CCCHHHHHHHhcC-----CC-CeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhCccc
Confidence 3667899998644 33 344444579999999888777777664322 1233 333344455555666666542
Q ss_pred ---ceEEEEEcCh
Q psy14604 180 ---FYVVTYVGDK 189 (209)
Q Consensus 180 ---l~v~~y~G~~ 189 (209)
+.+.++|+-.
T Consensus 76 ~~~~~v~TfHs~~ 88 (655)
T COG0210 76 AEGLTVGTFHSFA 88 (655)
T ss_pred ccCcEEeeHHHHH
Confidence 4555555443
No 443
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=27.31 E-value=1.2e+02 Score=24.48 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=22.5
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
++.-.|+.|||...|..+..+... ...+||+-|
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~---~~~v~~~kp 37 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIA---GKKVLVFKP 37 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T-EEEEEEE
T ss_pred EEECCcCChhHHHHHHHHHHHHhC---CCeEEEEEe
Confidence 345689999999998887655433 234666666
No 444
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=27.12 E-value=1.7e+02 Score=25.94 Aligned_cols=62 Identities=19% Similarity=0.028 Sum_probs=33.6
Q ss_pred CCCchHHHHHHHHHHHHhhC------------CCCCcEEEEeCcccHHHHHHHHHHhCCCceEEEEEcChhHHH
Q psy14604 132 MGLGKTIQTITFLYSLFKEG------------HCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRI 193 (209)
Q Consensus 132 mGLGKT~q~ia~l~~~~~~~------------~~~~~~LIV~P~sl~~qW~~E~~~~~~~l~v~~y~G~~~~r~ 193 (209)
=|.|||-.++.++-.+...+ ...+..++|.+.+....==.|--..+-.+.+.++.|..+.+.
T Consensus 39 GGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR~~a 112 (311)
T TIGR00682 39 GGTGKTPVVVWLAELLKDRGLRVGVLSRGYGSKTKKYTLVGSKKHTASEVGDEPVLLAKYLHATVVASKDRKDA 112 (311)
T ss_pred CCcChHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCeeeeCCCCChHHcCcHHHHhhhhcCCcEEEeChHHHH
Confidence 37999999999987776542 112234566555432221134333332234556666666553
No 445
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=27.09 E-value=1.6e+02 Score=26.46 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=19.3
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
.++-.+++-.+|.|||-..-+++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 33446778999999998887766554
No 446
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=26.84 E-value=1.5e+02 Score=27.57 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=27.8
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWE 170 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~ 170 (209)
..|.+|.-..|.|||..+-++...+ ..+++-|....++..|.
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el------~~~fi~V~~seL~~k~~ 258 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANET------SATFLRVVGSELIQKYL 258 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh------CCCEEEEecchhhhhhc
Confidence 3467889999999999987775533 23455555555554444
No 447
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.67 E-value=1e+02 Score=30.58 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|...+..|.+.+..+. ..||.-..|+|||..+..|...+.-
T Consensus 21 Qe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 21 QEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4444444444444433 4588889999999999988877753
No 448
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.59 E-value=1e+02 Score=29.86 Aligned_cols=40 Identities=20% Similarity=0.088 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCCchHHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQNI--D-TILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~--g-~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
|...+..|.+.+..+. . -||.-..|.|||..+.+|...++
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6666666666555543 2 47889999999999999887765
No 449
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=26.20 E-value=87 Score=28.52 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=20.8
Q ss_pred hcCCCceEEEcCCCCchHHHHHHHHHH
Q psy14604 120 WGQNIDTILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 120 ~~~~~g~iLaD~mGLGKT~q~ia~l~~ 146 (209)
+..+.+.||+-+-|+|||...|-+..+
T Consensus 86 fr~g~~~~~~gdsg~GKttllL~l~Ia 112 (402)
T COG3598 86 FRKGYVSILYGDSGVGKTTLLLYLCIA 112 (402)
T ss_pred hhcCeeEEEecCCcccHhHHHHHHHHH
Confidence 347778899888999999987766433
No 450
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=26.16 E-value=1.1e+02 Score=26.65 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=24.7
Q ss_pred HHHHHHhhcCCCceEEEcCCCCchHHHHHHHHH
Q psy14604 113 INWLRYSWGQNIDTILADEMGLGKTIQTITFLY 145 (209)
Q Consensus 113 v~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~ 145 (209)
..||......+...+++-.+|.|||-..-+++.
T Consensus 134 ~~~l~~~v~~~~~ili~G~tGsGKTTll~al~~ 166 (308)
T TIGR02788 134 KEFLRLAIASRKNIIISGGTGSGKTTFLKSLVD 166 (308)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc
Confidence 345555566777889999999999987766553
No 451
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=26.03 E-value=2.6e+02 Score=25.49 Aligned_cols=45 Identities=13% Similarity=0.055 Sum_probs=29.9
Q ss_pred CchHHHHHHHHHHHhhc----CCCceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 105 LHAYQLEGINWLRYSWG----QNIDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~----~~~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
+..-..+-|+|+..... .....+|+-.+|.|||..+-++...+-.
T Consensus 56 ~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 56 MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 33445566777765543 1233588999999999988887666533
No 452
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=26.00 E-value=76 Score=28.34 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=13.5
Q ss_pred ceEEEcCCCCchHHHHH
Q psy14604 125 DTILADEMGLGKTIQTI 141 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~i 141 (209)
.++|.-..|||||--|.
T Consensus 54 HvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 54 HVLLFGPPGLGKTTLAH 70 (332)
T ss_pred eEEeeCCCCCcHHHHHH
Confidence 47888999999997443
No 453
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.95 E-value=1.3e+02 Score=28.61 Aligned_cols=40 Identities=23% Similarity=0.164 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQN---IDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~---~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
|...+..|.+....+ ...||.-..|.|||..+..|...+.
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444454444444333 2458899999999998888877664
No 454
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=25.93 E-value=1.7e+02 Score=26.10 Aligned_cols=57 Identities=26% Similarity=0.211 Sum_probs=34.5
Q ss_pred CCchHHHHHHHHHHHHhhCC------------CCCcEEEEeCcccHHHHHHH---HHHhCCCceEEEEEcChhHH
Q psy14604 133 GLGKTIQTITFLYSLFKEGH------------CKGPFLVSAPLSTIINWERE---FETWAPDFYVVTYVGDKDCR 192 (209)
Q Consensus 133 GLGKT~q~ia~l~~~~~~~~------------~~~~~LIV~P~sl~~qW~~E---~~~~~~~l~v~~y~G~~~~r 192 (209)
|.|||-.++.++..+...+. ..+..++|.+.+....==.| +.+.+| +.++.|..+.+
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~---~~V~V~~dR~~ 118 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP---VPVIVGPDRVA 118 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC---CcEEEeCcHHH
Confidence 89999999999888766531 11226777777644333334 344444 55555555444
No 455
>PRK12608 transcription termination factor Rho; Provisional
Probab=25.87 E-value=1.4e+02 Score=27.32 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 109 QLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
-...++.+.- ...+..++|.-+.|.|||..+..++..+...
T Consensus 120 ~~RvID~l~P-iGkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 120 SMRVVDLVAP-IGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred hHhhhhheee-cCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3345555542 2456667777789999999888877666443
No 456
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=25.84 E-value=3.5e+02 Score=22.85 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=21.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
.-+|....|.|||..+.++...++..
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 36778889999999999998888744
No 457
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=25.64 E-value=2.3e+02 Score=24.75 Aligned_cols=37 Identities=8% Similarity=0.095 Sum_probs=28.6
Q ss_pred CCcEEEEeCc-ccHHHHHHHHHHhCCCceEEEEEcChh
Q psy14604 154 KGPFLVSAPL-STIINWEREFETWAPDFYVVTYVGDKD 190 (209)
Q Consensus 154 ~~~~LIV~P~-sl~~qW~~E~~~~~~~l~v~~y~G~~~ 190 (209)
.+++||+|+. .-+....+.|....++..+..|||.-.
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~ 259 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFT 259 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCC
Confidence 3579999995 445667788887777778999999753
No 458
>KOG0735|consensus
Probab=25.46 E-value=2.2e+02 Score=28.79 Aligned_cols=77 Identities=21% Similarity=0.097 Sum_probs=46.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc----------ccHHHHHHHH
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL----------STIINWEREF 173 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~----------sl~~qW~~E~ 173 (209)
++..|-.+-.+....-.-.++.-+|+-..|.|||.-+=+++-.+... ..+.-.+|-|-. .++.+|..|.
T Consensus 412 ~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~-~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~ 490 (952)
T KOG0735|consen 412 QVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKD-LIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEA 490 (952)
T ss_pred ecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhccc-cceEEEEEechhccchhHHHHHHHHHHHHHHH
Confidence 34445555444333223355566788899999999988887666532 222223455552 2566777777
Q ss_pred HHhCCCce
Q psy14604 174 ETWAPDFY 181 (209)
Q Consensus 174 ~~~~~~l~ 181 (209)
..+.|.+-
T Consensus 491 ~~~~PSiI 498 (952)
T KOG0735|consen 491 LWYAPSII 498 (952)
T ss_pred HhhCCcEE
Confidence 77777543
No 459
>PRK07773 replicative DNA helicase; Validated
Probab=25.30 E-value=1.4e+02 Score=30.24 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=27.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
+.-.|||--.|+|||.-++.++....... ..+++++.-
T Consensus 217 G~livIagrPg~GKT~fal~ia~~~a~~~--~~~V~~fSl 254 (886)
T PRK07773 217 GQLIIVAARPSMGKTTFGLDFARNCAIRH--RLAVAIFSL 254 (886)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhc--CCeEEEEec
Confidence 33468999999999999999987664332 245777665
No 460
>CHL00195 ycf46 Ycf46; Provisional
Probab=25.29 E-value=85 Score=29.66 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=25.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI 166 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~ 166 (209)
..|.+|.-..|.|||+.+=++...+ ..|++.+-+..+.
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~~l~ 296 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVGKLF 296 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhHHhc
Confidence 3467888899999999887765432 2356666554433
No 461
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.25 E-value=3.3e+02 Score=25.44 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=16.7
Q ss_pred EEEcCCCCchHHHHHHHHHHH
Q psy14604 127 ILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~ 147 (209)
++.-..|.|||.++.-++...
T Consensus 227 ~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 227 FFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 456688999999998887654
No 462
>KOG0991|consensus
Probab=25.15 E-value=1.5e+02 Score=25.90 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=22.7
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
+-..-|++-..|.|||-.++++...++.
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 3346799999999999999998877653
No 463
>KOG3349|consensus
Probab=25.11 E-value=1.7e+02 Score=23.64 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=42.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhCCCceEEEEEcChhHHHHHhhhc
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHD 199 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~~l~v~~y~G~~~~r~~i~~~~ 199 (209)
-++.+ -|.|--+++|.. .+|.|||+-.+|+.|-+-|+.+-+-..+.+.|+-...--..++..+
T Consensus 83 lVIsH-AGaGS~letL~l----------~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps~L~~~L~~~~ 145 (170)
T KOG3349|consen 83 LVISH-AGAGSCLETLRL----------GKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPSTLPAGLAKLD 145 (170)
T ss_pred EEEec-CCcchHHHHHHc----------CCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeeccchHHHHHhhc
Confidence 34444 477766666532 4677777778999999999988665667777766665555554433
No 464
>PRK04195 replication factor C large subunit; Provisional
Probab=24.88 E-value=1.5e+02 Score=27.61 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=19.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~ 146 (209)
....+|.-..|.|||..+-+++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346788999999999988877543
No 465
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=24.65 E-value=3e+02 Score=23.03 Aligned_cols=59 Identities=20% Similarity=0.095 Sum_probs=38.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhC-------------------C-CCCcEEE-----Ee--CcccHHHHHHHHHHhC
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEG-------------------H-CKGPFLV-----SA--PLSTIINWEREFETWA 177 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~-------------------~-~~~~~LI-----V~--P~sl~~qW~~E~~~~~ 177 (209)
.-.++-.+|.|||.-...++..+.... . ..-|++- .| |.++...=..|+..|+
T Consensus 15 ~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~~ 94 (202)
T COG0378 15 RIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLDF 94 (202)
T ss_pred EEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhcC
Confidence 356788899999998888776664431 1 1223333 35 7777777888888888
Q ss_pred CCceEE
Q psy14604 178 PDFYVV 183 (209)
Q Consensus 178 ~~l~v~ 183 (209)
+++-++
T Consensus 95 ~~~Dll 100 (202)
T COG0378 95 PDLDLL 100 (202)
T ss_pred CcCCEE
Confidence 754333
No 466
>PHA00547 hypothetical protein
Probab=24.62 E-value=1.7e+02 Score=25.87 Aligned_cols=36 Identities=22% Similarity=0.518 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFL 144 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l 144 (209)
+|...+++..-.+.. .-.++--.+|.|||+-+--+.
T Consensus 61 ~~~~~~k~VK~ik~s-pis~i~G~LGsGKTlLMT~LA 96 (337)
T PHA00547 61 YQLNAFRLVNFIWDN-PLSVIIGKLGTGKTLLLTYLS 96 (337)
T ss_pred HHHHHHHHHHHHhcC-CceEEeccCCCchhHHHHHHH
Confidence 455666555444444 444555569999998654443
No 467
>KOG3928|consensus
Probab=24.62 E-value=1.2e+02 Score=28.40 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
.-||--+.|.|||+..+-+++....+
T Consensus 181 r~vL~Ge~GtGKSiaL~qa~h~a~~~ 206 (461)
T KOG3928|consen 181 RFVLDGEPGTGKSIALAQAVHYAADQ 206 (461)
T ss_pred EEEEeCCCCCchhhHHHHHHHHHhcC
Confidence 56888999999999877776655443
No 468
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=24.60 E-value=52 Score=32.24 Aligned_cols=72 Identities=26% Similarity=0.296 Sum_probs=49.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCc--hHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhC
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLG--KTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWA 177 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLG--KT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~ 177 (209)
..+.+||.....-... .......+++..|+| ||+.+..++........ ...+++++|..+..+|..|...++
T Consensus 83 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~ 156 (866)
T COG0553 83 FILIPHQLDIALEVLN--ELALRVLIADEVGLGDLKTIEAGAILKELLLRGE-IKRVLILVPKTLRAQWVVELLEKF 156 (866)
T ss_pred cccCcchhhhhhhhhh--hhhhchhhcccccccccccccccccchHhhhhhh-hccceeccchHHHHHHHHHhhhhc
Confidence 4566777765432211 122237889999999 89998877655544432 335899999999999999987763
No 469
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.46 E-value=1.4e+02 Score=28.06 Aligned_cols=41 Identities=22% Similarity=0.059 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcCCC--c-eEEEcCCCCchHHHHHHHHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNI--D-TILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~--g-~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
-|...+..|.+....+. . -+|.-+.|.|||..+..+...+.
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36666666666655543 2 36789999999988888776654
No 470
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=24.33 E-value=1.2e+02 Score=30.76 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
|...+..|.+.+..+. ..||.-.-|.|||..+..|...+.
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5666666655555443 347888999999999988877664
No 471
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=24.23 E-value=1.2e+02 Score=30.14 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
|...+..|...+..+. .-||.-..|.|||..+.+|...+.
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 5555555555444443 348888999999999988877654
No 472
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.12 E-value=1.1e+02 Score=31.54 Aligned_cols=41 Identities=22% Similarity=0.180 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCCC--ce-EEEcCCCCchHHHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQNI--DT-ILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~--g~-iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|...+.-|.+.+..+. .+ ||.-+.|.|||..+..|...+..
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 5555555555544433 34 78999999999999988877654
No 473
>PRK05642 DNA replication initiation factor; Validated
Probab=24.10 E-value=4.2e+02 Score=21.96 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=17.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
..+|.-..|+|||--+-|+...+.
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~ 70 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFE 70 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 356888999999987666654443
No 474
>TIGR03160 cobT_DBIPRT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase. Members of this family are nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, an enzyme of cobalamin biosynthesis.
Probab=24.06 E-value=1.5e+02 Score=26.59 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 112 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 112 gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
|..+.......+...|+.-|||.|=|-++.+++..+...
T Consensus 142 G~~~~~~~~~~g~dll~~GEmGiGnTTtAaAvl~aL~g~ 180 (333)
T TIGR03160 142 GIEAADEAADSGADLLGTGEMGIGNTTPAAALLAALTGL 180 (333)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCchhhHHHHHHHHHHhCc
Confidence 333334444566778999999999999999999888543
No 475
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.04 E-value=1.2e+02 Score=27.36 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=30.6
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhCCCceE
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYV 182 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~~l~v 182 (209)
++.---|.|||-+..=+.+.+...+ ..+||.+--+--.-=.++++.|...+.|
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~~g---~~VllaA~DTFRAaAiEQL~~w~er~gv 195 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQQG---KSVLLAAGDTFRAAAIEQLEVWGERLGV 195 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHHCC---CeEEEEecchHHHHHHHHHHHHHHHhCC
Confidence 3455679999966544544444433 3467777655444455566667533333
No 476
>KOG0327|consensus
Probab=24.03 E-value=40 Score=30.92 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHH-HHHHHHHhCC--CceEEE
Q psy14604 108 YQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN-WEREFETWAP--DFYVVT 184 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~q-W~~E~~~~~~--~l~v~~ 184 (209)
-|..||-=+. .+...+.--..|.|||.+-...++..........-+||++|...+.+ =..-+..|.. +.+|..
T Consensus 52 IQqraI~p~i----~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~ 127 (397)
T KOG0327|consen 52 IQQRAILPCI----KGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHA 127 (397)
T ss_pred HHhccccccc----cCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeee
Confidence 4777763222 56667777788999999833333332222222234799999776644 4444455543 445665
Q ss_pred EEcChhH
Q psy14604 185 YVGDKDC 191 (209)
Q Consensus 185 y~G~~~~ 191 (209)
+.|....
T Consensus 128 ~igg~~~ 134 (397)
T KOG0327|consen 128 CIGGTNV 134 (397)
T ss_pred ecCcccc
Confidence 5554433
No 477
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=24.02 E-value=1.6e+02 Score=25.10 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCCC--ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~--g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|.+.+..+......+. ..+|.-+.|.|||..+-++...+..
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4445555544443332 4688889999999998888766543
No 478
>cd02439 DMB-PRT_CobT Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (DMB-PRT), also called CobT. Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (DMB-PRT/CobT, not to be confused with the CobT subunit of cobaltochelatase, which does not belong to this group) catalyzes the synthesis of alpha-ribazole-5'-phosphate, from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). This function is essential to the anaerobic biosynthesis pathway of cobalamin (vitamin B12), which is the largest and most complex cofactor in a number of enzyme-catalyzed reactions in bacteria, archaea and eukaryotes. Only eubacteria and archaebacteria can synthesize vitamin B12; multicellular organisms have lost this ability during evolution. DMB-PRT/CobT works sequentially with CobC (a phosphatase) to couple the lower ligand of cobalamin to a ribosyl moiety. DMB is the most common lower ligand of cobamides; other lower ligands include adenine, 5-methoxyben
Probab=23.99 E-value=1.5e+02 Score=26.25 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 112 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 112 gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
|..+.......+...|+.-|||.|=|-++.+++..+...
T Consensus 126 G~~~~~~~~~~g~dll~~GEmgiGnTTtAaavl~aL~~~ 164 (315)
T cd02439 126 GIELAREALDSGYDLLVIGEMGIGNTTTAAAVLAALGGD 164 (315)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccccHHHHHHHHHHhCC
Confidence 333333445677789999999999999999999888654
No 479
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=23.92 E-value=4.1e+02 Score=27.02 Aligned_cols=91 Identities=18% Similarity=0.147 Sum_probs=54.6
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccH---HHHHHHHHHhC
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTI---INWEREFETWA 177 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~---~qW~~E~~~~~ 177 (209)
+...++-|+-|. |. .+.|.|.-+-+|=|||+++...++-.. .....+.||.. -.|+ ..|...+-.|.
T Consensus 78 g~~~~dVQliG~--i~----lh~g~iaEM~TGEGKTL~atlp~ylna---L~gkgVhvVTvNdYLA~RDae~m~~l~~~L 148 (822)
T COG0653 78 GMRHFDVQLLGG--IV----LHLGDIAEMRTGEGKTLVATLPAYLNA---LAGKGVHVVTVNDYLARRDAEWMGPLYEFL 148 (822)
T ss_pred CCChhhHHHhhh--hh----hcCCceeeeecCCchHHHHHHHHHHHh---cCCCCcEEeeehHHhhhhCHHHHHHHHHHc
Confidence 344444565553 33 678899999999999998876543322 22334666666 3443 45999999998
Q ss_pred CCceEEEEEc--ChhHHHHHhhhceec
Q psy14604 178 PDFYVVTYVG--DKDCRIVLRDHDISW 202 (209)
Q Consensus 178 ~~l~v~~y~G--~~~~r~~i~~~~~~~ 202 (209)
.+.|.+... +...|..+-.-++.|
T Consensus 149 -GlsvG~~~~~m~~~ek~~aY~~DItY 174 (822)
T COG0653 149 -GLSVGVILAGMSPEEKRAAYACDITY 174 (822)
T ss_pred -CCceeeccCCCChHHHHHHHhcCcee
Confidence 555555332 444454444434433
No 480
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=23.71 E-value=2.3e+02 Score=25.46 Aligned_cols=59 Identities=24% Similarity=0.183 Sum_probs=32.5
Q ss_pred CCchHHHHHHHHHHHHhhC------------CCCCcEEEEeCcccHHHHHHHHHHhCCCceEEEEEcChhHH
Q psy14604 133 GLGKTIQTITFLYSLFKEG------------HCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCR 192 (209)
Q Consensus 133 GLGKT~q~ia~l~~~~~~~------------~~~~~~LIV~P~sl~~qW~~E~~~~~~~l~v~~y~G~~~~r 192 (209)
|.|||-.++.++..+...+ ....| .+|.+.+-...==.|--..+-...+.++.|..+.+
T Consensus 68 GTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~~~~~-~~v~~~~~~~~~GDEpllla~~~~~~V~V~~dR~~ 138 (338)
T PRK01906 68 GTGKTPTVIALVDALRAAGFTPGVVSRGYGAKIKHP-TAVTPASRASDAGDEPLLIARRTDAPVWVCPDRVA 138 (338)
T ss_pred CCChHHHHHHHHHHHHHcCCceEEEecCCCCCCCCC-eEEcCCCChhhhCcHHHHhhhcCCCeEEEeCcHHH
Confidence 7999999999987776543 11224 55566542221112322222233556666666666
No 481
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=23.63 E-value=1.3e+02 Score=25.46 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=18.5
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhC
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~ 151 (209)
++.---|.|||..+.++...+...+
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g 28 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQG 28 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCC
Confidence 3445578999999998877766553
No 482
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=23.52 E-value=1.3e+02 Score=30.02 Aligned_cols=41 Identities=22% Similarity=0.123 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|...+.-|......+. ..||.-+.|.|||..|-+|...+.-
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 5555555555554443 3478899999999999988776643
No 483
>CHL00095 clpC Clp protease ATP binding subunit
Probab=23.47 E-value=3e+02 Score=27.64 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=32.4
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHhhCC----CCCcEEEEeCcccH------HHHHHHHHHhC
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFKEGH----CKGPFLVSAPLSTI------INWEREFETWA 177 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~~~~----~~~~~LIV~P~sl~------~qW~~E~~~~~ 177 (209)
.+.||.-+.|.|||..+-++...+..... ...+++.+-..+++ .+|++.+...+
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~ 264 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIF 264 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHH
Confidence 36788999999999999887665543211 11234433333333 45777666654
No 484
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=23.41 E-value=1.4e+02 Score=25.22 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcC----CCc---eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 109 QLEGINWLRYSWGQ----NID---TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 109 Q~~gv~~l~~~~~~----~~g---~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
-.++++.|+..+.. ... +|.+-.-|-|||..++.+...+...+ .++|+|
T Consensus 83 ~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g---~~VllI 138 (274)
T TIGR03029 83 QVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLG---EKTLLI 138 (274)
T ss_pred HHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcC---CeEEEE
Confidence 45566666544422 111 35566789999999998877765443 346666
No 485
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=23.30 E-value=1.3e+02 Score=29.44 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
|.+++.-|......+...+|--+.|.|||..+-++...+
T Consensus 36 q~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l 74 (637)
T PRK13765 36 QEHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELL 74 (637)
T ss_pred hHHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 666666666666667778888899999999888876554
No 486
>PRK00105 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed
Probab=23.25 E-value=1.6e+02 Score=26.43 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=27.2
Q ss_pred HHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 117 RYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 117 ~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
......+...|+.-|||.|=|-++.+++..+...
T Consensus 147 ~~~~~~g~dll~~GEmGiGnTTtAaAvl~aL~g~ 180 (335)
T PRK00105 147 DEAADAGTDLLGVGEMGIGNTTPAAALVAALTGG 180 (335)
T ss_pred HHHHHcCCCEEEEeCcCcchhHHHHHHHHHHhCc
Confidence 3444566778999999999999999999888543
No 487
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=23.20 E-value=1.9e+02 Score=25.82 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=19.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
..++-+.|.|||.-++.++......
T Consensus 58 teI~G~~GsGKTtLaL~~~~~~~~~ 82 (321)
T TIGR02012 58 IEIYGPESSGKTTLALHAIAEAQKA 82 (321)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4567789999999999888776543
No 488
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=23.15 E-value=1.2e+02 Score=25.43 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=26.1
Q ss_pred CCchHHHHHHHHHHHHhhCCCCCcEEEEe--CcccHHHHHHHH
Q psy14604 133 GLGKTIQTITFLYSLFKEGHCKGPFLVSA--PLSTIINWEREF 173 (209)
Q Consensus 133 GLGKT~q~ia~l~~~~~~~~~~~~~LIV~--P~sl~~qW~~E~ 173 (209)
|.|||..++.+...+...+ .+++||- |..-+..|....
T Consensus 12 GvGKTT~a~nLA~~la~~G---~~VlliD~DpQ~s~~~w~~~~ 51 (231)
T PRK13849 12 GAGKTTALMGLCAALASDG---KRVALFEADENRPLTRWKENA 51 (231)
T ss_pred CccHHHHHHHHHHHHHhCC---CcEEEEeCCCCCCHHHHHHhh
Confidence 7899999999887776553 2455553 455577887543
No 489
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=23.06 E-value=1.3e+02 Score=28.94 Aligned_cols=41 Identities=27% Similarity=0.172 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 109 QLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|...+.-|......+. .-||.-+.|.|||..+.++...+..
T Consensus 21 qe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 21 QDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 4444444444443433 2478899999999999998877753
No 490
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=22.91 E-value=91 Score=25.21 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=18.2
Q ss_pred eEEEcCCCCchHHHHHHHHHHHH
Q psy14604 126 TILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
.+++-.+|.|||....+++..+.
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 46788999999999877766554
No 491
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=22.86 E-value=88 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=19.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~ 146 (209)
+.|.++.-+.|.|||-.+++++..
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 456677888999999999988754
No 492
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=22.83 E-value=1.3e+02 Score=30.49 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=24.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
.|.+.++|.|||+.+..++.++...+. +++.+=|
T Consensus 31 fI~GtnT~VGKT~vS~~L~~~~~~~g~---~~~y~KP 64 (817)
T PLN02974 31 AVWGANTAVGKTLVSAGLAAAAASRRS---PVLYVKP 64 (817)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC---ceEEEEE
Confidence 688999999999999888877655432 3444444
No 493
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=22.81 E-value=1.2e+02 Score=30.73 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=32.5
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE-eCcccHHHHHHHHHHh
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS-APLSTIINWEREFETW 176 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV-~P~sl~~qW~~E~~~~ 176 (209)
++=-.||.|||-..+-++...+... ...+||| |-.+++.+-...|...
T Consensus 53 vVRSpMGTGKTtaLi~wLk~~l~~~--~~~VLvVShRrSL~~sL~~rf~~~ 101 (824)
T PF02399_consen 53 VVRSPMGTGKTTALIRWLKDALKNP--DKSVLVVSHRRSLTKSLAERFKKA 101 (824)
T ss_pred EEECCCCCCcHHHHHHHHHHhccCC--CCeEEEEEhHHHHHHHHHHHHhhc
Confidence 5667899999998888876654322 2235554 4577888777777654
No 494
>PRK10865 protein disaggregation chaperone; Provisional
Probab=22.81 E-value=2.5e+02 Score=28.49 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhcCC--CceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~--~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
|..-++.+...++.. ...||--+.|.|||..+-++...+.
T Consensus 183 r~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 333466666644433 3578889999999999988876654
No 495
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=22.79 E-value=1.8e+02 Score=21.93 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=14.6
Q ss_pred EEEcCCCCchHHHHHHHHHHHHh
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
+.+---|.|||..++.+...+..
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~ 26 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK 26 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH
Confidence 44445577777777777665543
No 496
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=22.71 E-value=1.2e+02 Score=23.53 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=16.0
Q ss_pred EEEcCCCCchHHHHHHHHHHH
Q psy14604 127 ILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~ 147 (209)
|..---|.|||..++.+...+
T Consensus 4 v~s~kgG~GKSt~a~nLA~~l 24 (179)
T cd03110 4 VISGKGGTGKTTVTAALAALL 24 (179)
T ss_pred EEcCCCCCCHHHHHHHHHHHH
Confidence 334456899999999887776
No 497
>PF08674 AChE_tetra: Acetylcholinesterase tetramerisation domain; InterPro: IPR014788 Cholinesterase enzymes are members of the broader alpha/beta hydrolase family and can be dividied into two distinct groups: those that catalyse the hydrolysis of acetylcholine to choline and acetate (acetylcholinesterases 3.1.1.7 from EC) acetylcholine + H2O -> choline + acetate and those that catalyse the conversion of other acylcholines to a choline and a weak acid (cholinesterases 3.1.1.8 from EC) an acylcholine + H2O -> choline + a carboxylate Acetylcholinesterase also acts on a variety of acetic esters and catalyses transacetylations. It is the most intensively studied of the cholinesterase enzymes due to its key physiological role in the turnover of the neurotransmitter acylcholine []. This enzyme is found in, or attached to, cellular or basement membranes of presynaptic cholinergic neurons and postsynaptic cholinoceptive cells within the neuromuscular junction. Signal transmission at the neuromuscular junction involves the release of acylcholine, its interaction with the acycholine receptor and hydrolysis, all occuring in a period of a few milliseconds. Rapid hydrolysis of the newly released aceytlcholine is vital in order to prevent continuous firing of the nerve impulses []. Consistent with its role in this process, acetylcholinesterase has an unusually high turnover number, ensuring that acetylcholine is broken down quickly. There is evidence to suggest that acetylcholinesterase has additional important roles including involvement in neuronal adhesion, the formation of Alzheimer fibrils, and neurite growth [, , ]. The 3D structure of acetylcholinesterase and a cholinesterase have been determined [, ]. These proteins share the 3-layer alpha-beta-alpha sandwich fold common to members of the alpha/beta hydrolase family. Surprisingly, given the high turnover number of acetylcholinesterase, the active site of these enzymes is located at the bottom of a deep and narrow cleft, named the active-site gorge. The acetylcholinesterase tetramerisation domain is found at the C terminus and forms a left handed superhelix. ; GO: 0004091 carboxylesterase activity, 0016020 membrane; PDB: 1VZJ_A.
Probab=22.61 E-value=61 Score=19.51 Aligned_cols=11 Identities=36% Similarity=1.193 Sum_probs=9.4
Q ss_pred HHHHHHHHHhC
Q psy14604 167 INWEREFETWA 177 (209)
Q Consensus 167 ~qW~~E~~~~~ 177 (209)
.+|..||.+|.
T Consensus 5 ~~WK~~FhrWs 15 (37)
T PF08674_consen 5 REWKAEFHRWS 15 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46999999995
No 498
>PRK07667 uridine kinase; Provisional
Probab=22.59 E-value=2.9e+02 Score=22.08 Aligned_cols=23 Identities=13% Similarity=-0.016 Sum_probs=16.9
Q ss_pred EEEcCCCCchHHHHHHHHHHHHh
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
.++...|.|||-.+-.+...+..
T Consensus 21 gI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 21 GIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 44678899999988777665543
No 499
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=22.51 E-value=1.6e+02 Score=23.77 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=17.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
+|.+---|.|||..++.+.+++..
T Consensus 39 ~v~s~kgG~GkSt~a~nLA~~la~ 62 (207)
T TIGR03018 39 MVTSSLPGEGKSFTAINLAISLAQ 62 (207)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHH
Confidence 344456799999999888777654
No 500
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=22.46 E-value=1.6e+02 Score=25.16 Aligned_cols=39 Identities=21% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcC-------CCceEEEcCCCCchHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQ-------NIDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 109 Q~~gv~~l~~~~~~-------~~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
|...+..|...... ....+|.-..|.|||..+.++...+
T Consensus 9 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 9 QEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Done!