Query psy14604
Match_columns 209
No_of_seqs 241 out of 1455
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 15:59:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 99.9 1.4E-23 4.8E-28 202.7 12.0 110 91-202 225-334 (800)
2 1z63_A Helicase of the SNF2/RA 99.8 1.2E-19 4E-24 165.1 11.6 90 100-190 33-122 (500)
3 1z3i_X Similar to RAD54-like; 99.8 7E-20 2.4E-24 173.2 9.4 89 101-189 52-150 (644)
4 3dmq_A RNA polymerase-associat 99.5 1.2E-14 4E-19 143.3 10.4 90 99-192 148-237 (968)
5 1wp9_A ATP-dependent RNA helic 99.5 2.3E-14 7.7E-19 126.5 7.3 85 101-192 6-93 (494)
6 2fwr_A DNA repair protein RAD2 99.3 1E-11 3.6E-16 111.8 8.6 77 102-190 91-169 (472)
7 3tbk_A RIG-I helicase domain; 99.2 3.4E-11 1.2E-15 109.1 10.2 86 103-192 3-93 (555)
8 4a2p_A RIG-I, retinoic acid in 99.2 5.1E-11 1.7E-15 108.3 9.8 86 103-192 6-96 (556)
9 1rif_A DAR protein, DNA helica 99.2 4.5E-11 1.5E-15 101.2 7.7 80 103-188 112-194 (282)
10 2ykg_A Probable ATP-dependent 99.2 1.4E-10 4.7E-15 109.1 11.3 84 103-190 12-100 (696)
11 2fz4_A DNA repair protein RAD2 99.1 2.4E-10 8.1E-15 95.2 9.9 77 101-189 90-168 (237)
12 4a2q_A RIG-I, retinoic acid in 99.1 2.4E-10 8.2E-15 110.0 10.5 87 102-192 246-337 (797)
13 4gl2_A Interferon-induced heli 99.1 5.6E-11 1.9E-15 111.9 5.8 85 103-191 6-96 (699)
14 1xti_A Probable ATP-dependent 99.1 3.9E-10 1.3E-14 98.0 10.6 85 104-192 30-118 (391)
15 1t6n_A Probable ATP-dependent 99.1 6.5E-10 2.2E-14 90.1 10.9 84 104-191 36-123 (220)
16 2oca_A DAR protein, ATP-depend 99.1 1.6E-10 5.5E-15 105.0 7.7 83 103-191 112-197 (510)
17 2gxq_A Heat resistant RNA depe 99.1 7.7E-10 2.6E-14 88.5 10.7 85 103-191 22-110 (207)
18 4a2w_A RIG-I, retinoic acid in 99.1 2E-10 6.7E-15 112.8 8.3 87 102-192 246-337 (936)
19 3b6e_A Interferon-induced heli 99.0 5.1E-10 1.7E-14 89.6 8.0 85 102-190 31-121 (216)
20 3h1t_A Type I site-specific re 99.0 6.2E-10 2.1E-14 103.3 7.8 79 100-178 174-261 (590)
21 2oxc_A Probable ATP-dependent 99.0 4.7E-09 1.6E-13 86.0 11.2 85 104-192 46-134 (230)
22 1s2m_A Putative ATP-dependent 98.9 3.3E-09 1.1E-13 92.7 10.4 87 104-194 43-132 (400)
23 1vec_A ATP-dependent RNA helic 98.9 5.2E-09 1.8E-13 83.6 10.8 87 104-194 25-115 (206)
24 1fuu_A Yeast initiation factor 98.9 2.6E-09 8.9E-14 92.7 9.5 85 103-191 42-129 (394)
25 2z0m_A 337AA long hypothetical 98.9 5.2E-09 1.8E-13 88.8 11.2 79 104-192 16-97 (337)
26 1qde_A EIF4A, translation init 98.9 5.1E-09 1.7E-13 84.9 10.4 85 103-191 35-122 (224)
27 2j0s_A ATP-dependent RNA helic 98.9 4.3E-09 1.5E-13 92.4 10.3 86 104-193 59-147 (410)
28 2pl3_A Probable ATP-dependent 98.9 9.2E-09 3.1E-13 84.2 11.0 86 103-192 46-138 (236)
29 3ber_A Probable ATP-dependent 98.9 9.5E-09 3.2E-13 85.6 10.9 84 104-191 65-151 (249)
30 1q0u_A Bstdead; DEAD protein, 98.9 4.7E-09 1.6E-13 85.2 8.7 87 103-193 25-118 (219)
31 1hv8_A Putative ATP-dependent 98.8 1E-08 3.5E-13 87.8 9.4 85 104-192 28-115 (367)
32 1wrb_A DJVLGB; RNA helicase, D 98.8 2.6E-08 8.8E-13 82.5 10.9 86 103-192 44-141 (253)
33 3pey_A ATP-dependent RNA helic 98.8 1.9E-08 6.6E-13 86.9 10.2 85 103-189 26-113 (395)
34 3eiq_A Eukaryotic initiation f 98.8 1.8E-08 6E-13 88.1 10.0 88 103-194 61-151 (414)
35 3bor_A Human initiation factor 98.8 1.7E-08 5.8E-13 83.1 9.0 85 104-192 52-139 (237)
36 3iuy_A Probable ATP-dependent 98.7 1.4E-07 4.7E-12 76.8 10.4 85 104-192 42-134 (228)
37 3oiy_A Reverse gyrase helicase 98.6 1.1E-07 3.8E-12 83.9 9.3 83 102-191 19-103 (414)
38 2i4i_A ATP-dependent RNA helic 98.6 3E-07 1E-11 80.4 11.2 88 103-194 36-144 (417)
39 3dkp_A Probable ATP-dependent 98.6 1.4E-07 4.9E-12 77.5 8.5 82 104-189 51-136 (245)
40 3fht_A ATP-dependent RNA helic 98.6 2.3E-07 7.7E-12 80.9 10.1 85 103-189 46-134 (412)
41 2db3_A ATP-dependent RNA helic 98.6 2.8E-07 9.5E-12 82.5 10.4 85 104-192 78-170 (434)
42 2w00_A HSDR, R.ECOR124I; ATP-b 98.5 1.1E-07 3.6E-12 94.5 7.7 76 103-179 270-356 (1038)
43 2xgj_A ATP-dependent RNA helic 98.5 4.6E-07 1.6E-11 89.8 11.3 82 99-189 81-163 (1010)
44 3fe2_A Probable ATP-dependent 98.5 6.3E-07 2.2E-11 73.7 10.3 85 104-192 51-143 (242)
45 2eyq_A TRCF, transcription-rep 98.5 4.7E-07 1.6E-11 90.8 10.7 85 101-188 600-689 (1151)
46 1gm5_A RECG; helicase, replica 98.4 8.6E-07 2.9E-11 85.6 10.1 89 101-192 365-458 (780)
47 3ly5_A ATP-dependent RNA helic 98.4 1.6E-06 5.4E-11 72.6 10.1 85 104-192 76-167 (262)
48 3fho_A ATP-dependent RNA helic 98.4 3E-07 1E-11 84.1 5.3 74 104-179 141-215 (508)
49 3l9o_A ATP-dependent RNA helic 98.4 1.4E-06 4.9E-11 87.0 10.3 80 101-189 181-261 (1108)
50 4a4z_A Antiviral helicase SKI2 98.3 2.5E-06 8.7E-11 84.3 11.1 86 97-189 32-118 (997)
51 3sqw_A ATP-dependent RNA helic 98.3 2.7E-06 9.3E-11 78.7 10.5 88 104-193 43-141 (579)
52 3fmp_B ATP-dependent RNA helic 98.2 2.1E-06 7.2E-11 77.2 7.7 85 103-189 113-201 (479)
53 3i5x_A ATP-dependent RNA helic 98.2 8E-06 2.7E-10 74.8 10.8 87 104-192 94-191 (563)
54 2p6r_A Afuhel308 helicase; pro 98.1 4.5E-06 1.5E-10 79.0 7.0 80 104-190 25-106 (702)
55 3fmo_B ATP-dependent RNA helic 98.1 1.5E-05 5.1E-10 68.1 9.5 84 103-190 113-202 (300)
56 2zj8_A DNA helicase, putative 98.0 8.3E-06 2.9E-10 77.4 6.4 81 104-190 23-106 (720)
57 2va8_A SSO2462, SKI2-type heli 97.9 1.6E-05 5.3E-10 75.3 7.9 81 104-189 30-112 (715)
58 2v1x_A ATP-dependent DNA helic 97.9 1.7E-05 5.8E-10 74.2 7.8 75 103-189 43-118 (591)
59 1oyw_A RECQ helicase, ATP-depe 97.9 1.7E-05 5.9E-10 72.9 7.6 75 104-190 25-100 (523)
60 3crv_A XPD/RAD3 related DNA he 97.9 2.7E-05 9.3E-10 71.9 8.8 81 103-189 2-85 (551)
61 4ddu_A Reverse gyrase; topoiso 97.8 5.8E-05 2E-09 75.4 10.2 84 101-191 75-160 (1104)
62 2vl7_A XPD; helicase, unknown 97.7 8.4E-05 2.9E-09 68.6 8.4 78 102-187 5-83 (540)
63 1gku_B Reverse gyrase, TOP-RG; 97.6 0.00016 5.4E-09 71.9 8.6 83 101-191 54-143 (1054)
64 4a15_A XPD helicase, ATP-depen 97.5 0.0002 6.7E-09 67.4 7.6 85 103-189 2-89 (620)
65 1c4o_A DNA nucleotide excision 97.2 0.0012 4E-08 62.5 9.9 78 103-186 7-86 (664)
66 2d7d_A Uvrabc system protein B 97.1 0.0025 8.6E-08 60.2 10.3 78 103-186 11-90 (661)
67 1tf5_A Preprotein translocase 96.5 0.012 4.1E-07 57.2 10.3 80 101-190 80-163 (844)
68 1nkt_A Preprotein translocase 96.4 0.012 4.1E-07 57.5 9.4 80 101-190 108-191 (922)
69 2fsf_A Preprotein translocase 96.4 0.013 4.3E-07 57.0 9.4 80 101-190 71-154 (853)
70 4f92_B U5 small nuclear ribonu 96.4 0.014 4.7E-07 60.9 10.3 85 104-192 926-1014(1724)
71 3llm_A ATP-dependent RNA helic 96.2 0.016 5.5E-07 47.0 8.0 71 103-177 60-133 (235)
72 2ipc_A Preprotein translocase 95.7 0.045 1.5E-06 53.7 9.6 80 101-190 76-159 (997)
73 2v6i_A RNA helicase; membrane, 95.4 0.015 5.1E-07 51.8 4.9 59 123-188 2-62 (431)
74 4b3f_X DNA-binding protein smu 95.0 0.077 2.6E-06 49.6 8.7 69 102-176 187-256 (646)
75 2z83_A Helicase/nucleoside tri 94.9 0.022 7.7E-07 51.1 4.5 53 120-175 18-72 (459)
76 1yks_A Genome polyprotein [con 94.6 0.024 8.2E-07 50.7 4.0 53 121-176 6-60 (440)
77 4f92_B U5 small nuclear ribonu 94.6 0.15 5.1E-06 53.2 10.3 85 103-190 78-173 (1724)
78 3upu_A ATP-dependent DNA helic 93.9 0.21 7.2E-06 44.6 8.6 63 103-167 24-87 (459)
79 2wv9_A Flavivirin protease NS2 93.6 0.05 1.7E-06 51.5 4.2 53 121-176 239-293 (673)
80 2gk6_A Regulator of nonsense t 93.4 0.28 9.7E-06 45.7 8.8 67 103-175 179-246 (624)
81 3jux_A Protein translocase sub 93.0 0.53 1.8E-05 45.4 10.1 77 101-187 72-152 (822)
82 2jlq_A Serine protease subunit 93.0 0.078 2.7E-06 47.3 4.2 51 122-175 17-70 (451)
83 3o8b_A HCV NS3 protease/helica 92.8 0.023 7.8E-07 53.9 0.4 60 122-188 231-291 (666)
84 2whx_A Serine protease/ntpase/ 92.6 0.11 3.6E-06 48.7 4.7 53 119-174 182-236 (618)
85 3e1s_A Exodeoxyribonuclease V, 92.0 0.51 1.7E-05 43.7 8.5 64 102-172 187-250 (574)
86 2wjy_A Regulator of nonsense t 91.9 0.55 1.9E-05 45.3 8.8 67 103-175 355-422 (800)
87 2xzl_A ATP-dependent helicase 91.8 0.41 1.4E-05 46.2 7.9 68 103-176 359-427 (802)
88 3rc3_A ATP-dependent RNA helic 91.1 0.27 9.1E-06 46.6 5.7 60 122-190 154-214 (677)
89 3lfu_A DNA helicase II; SF1 he 90.4 0.63 2.1E-05 42.8 7.4 79 103-187 8-92 (647)
90 2xau_A PRE-mRNA-splicing facto 89.2 0.42 1.5E-05 45.8 5.4 67 107-176 96-163 (773)
91 1w36_D RECD, exodeoxyribonucle 89.1 1.2 4E-05 41.4 8.1 65 106-174 151-217 (608)
92 1uaa_A REP helicase, protein ( 87.5 1.3 4.6E-05 41.2 7.5 80 104-189 2-88 (673)
93 3hjh_A Transcription-repair-co 86.6 0.97 3.3E-05 41.1 5.8 54 126-186 17-71 (483)
94 2b8t_A Thymidine kinase; deoxy 81.5 2 6.8E-05 34.9 5.1 36 125-163 14-49 (223)
95 2o0j_A Terminase, DNA packagin 79.3 6.5 0.00022 34.5 8.0 71 102-177 161-232 (385)
96 1a5t_A Delta prime, HOLB; zinc 77.7 3.2 0.00011 35.1 5.4 45 105-149 3-50 (334)
97 2w58_A DNAI, primosome compone 77.2 6.3 0.00021 30.1 6.6 26 124-149 55-80 (202)
98 1pjr_A PCRA; DNA repair, DNA r 76.7 6.7 0.00023 37.0 7.8 79 104-188 11-95 (724)
99 3cpe_A Terminase, DNA packagin 72.2 12 0.00041 34.3 8.1 71 102-177 161-232 (592)
100 2j9r_A Thymidine kinase; TK1, 70.9 6.8 0.00023 31.7 5.4 34 127-163 32-65 (214)
101 2orw_A Thymidine kinase; TMTK, 69.9 5.5 0.00019 30.8 4.6 35 126-163 6-40 (184)
102 3u4q_B ATP-dependent helicase/ 69.0 5.5 0.00019 39.6 5.4 51 127-178 6-56 (1166)
103 1xx6_A Thymidine kinase; NESG, 68.0 7.1 0.00024 30.6 4.9 35 126-163 11-45 (191)
104 2zts_A Putative uncharacterize 67.3 15 0.00051 28.6 6.8 49 125-175 32-80 (251)
105 3ec2_A DNA replication protein 66.7 18 0.0006 27.0 6.8 43 106-148 16-63 (180)
106 3bh0_A DNAB-like replicative h 66.5 19 0.00065 30.1 7.6 50 112-164 57-106 (315)
107 4b4t_J 26S protease regulatory 65.4 6.5 0.00022 34.9 4.6 45 122-172 181-225 (405)
108 4b4t_M 26S protease regulatory 63.1 5.8 0.0002 35.5 3.8 44 123-172 215-258 (434)
109 3bgw_A DNAB-like replicative h 62.7 17 0.00058 32.2 6.8 49 112-163 186-234 (444)
110 1l8q_A Chromosomal replication 61.8 25 0.00087 28.9 7.5 25 124-148 38-62 (324)
111 4b4t_L 26S protease subunit RP 61.6 6.3 0.00022 35.3 3.8 44 123-172 215-258 (437)
112 2qgz_A Helicase loader, putati 60.2 18 0.00061 30.2 6.2 26 123-148 152-177 (308)
113 2eyq_A TRCF, transcription-rep 60.0 6.3 0.00022 39.4 3.8 51 128-185 22-73 (1151)
114 3of5_A Dethiobiotin synthetase 59.8 7.7 0.00026 31.1 3.7 26 126-151 8-33 (228)
115 4b4t_I 26S protease regulatory 59.8 8.4 0.00029 34.6 4.2 44 123-172 216-259 (437)
116 3h4m_A Proteasome-activating n 59.0 12 0.00041 30.1 4.8 39 122-166 50-88 (285)
117 4b4t_K 26S protease regulatory 58.8 5.6 0.00019 35.5 2.9 44 123-172 206-249 (428)
118 3qxc_A Dethiobiotin synthetase 58.5 7.4 0.00025 31.8 3.4 26 126-151 25-50 (242)
119 4a1f_A DNAB helicase, replicat 58.3 34 0.0011 29.3 7.7 50 112-164 35-84 (338)
120 1byi_A Dethiobiotin synthase; 57.8 16 0.00055 28.2 5.2 34 126-162 5-38 (224)
121 3uk6_A RUVB-like 2; hexameric 57.1 18 0.00063 30.1 5.9 43 105-147 48-94 (368)
122 3syl_A Protein CBBX; photosynt 57.0 17 0.00058 29.5 5.5 41 125-165 69-110 (309)
123 3dm5_A SRP54, signal recogniti 57.0 31 0.0011 30.8 7.5 56 127-185 104-159 (443)
124 3t15_A Ribulose bisphosphate c 56.9 10 0.00035 31.4 4.1 39 125-169 38-76 (293)
125 3u4q_A ATP-dependent helicase/ 56.8 19 0.00066 36.1 6.7 57 102-164 8-67 (1232)
126 2q6t_A DNAB replication FORK h 56.7 37 0.0013 29.7 7.9 55 112-168 189-243 (444)
127 1w4r_A Thymidine kinase; type 56.4 14 0.00049 29.3 4.7 35 126-163 23-57 (195)
128 3fgn_A Dethiobiotin synthetase 55.9 8.6 0.00029 31.6 3.4 26 126-151 30-55 (251)
129 2dr3_A UPF0273 protein PH0284; 55.5 34 0.0012 26.4 6.9 50 122-174 22-71 (247)
130 2c9o_A RUVB-like 1; hexameric 55.5 11 0.00036 33.4 4.2 45 124-172 64-108 (456)
131 2zan_A Vacuolar protein sortin 55.4 17 0.0006 31.9 5.6 44 124-172 168-211 (444)
132 4b4t_H 26S protease regulatory 54.8 9 0.00031 34.6 3.6 45 122-172 242-286 (467)
133 3eie_A Vacuolar protein sortin 54.0 8.7 0.0003 32.1 3.2 40 125-170 53-92 (322)
134 1jbk_A CLPB protein; beta barr 53.1 20 0.00067 26.1 4.8 26 124-149 44-69 (195)
135 2qp9_X Vacuolar protein sortin 51.8 8.7 0.0003 32.8 2.9 40 124-169 85-124 (355)
136 2r44_A Uncharacterized protein 50.3 9.5 0.00032 31.7 2.8 27 120-146 43-69 (331)
137 1sxj_D Activator 1 41 kDa subu 50.2 16 0.00055 30.1 4.3 53 124-176 59-113 (353)
138 2r6a_A DNAB helicase, replicat 49.4 59 0.002 28.5 8.1 50 112-163 192-241 (454)
139 1xwi_A SKD1 protein; VPS4B, AA 49.4 12 0.0004 31.5 3.3 39 124-167 46-84 (322)
140 3bos_A Putative DNA replicatio 48.7 42 0.0014 25.5 6.3 38 111-148 38-77 (242)
141 2p65_A Hypothetical protein PF 47.7 21 0.00071 26.0 4.2 26 124-149 44-69 (187)
142 3fwy_A Light-independent proto 46.8 17 0.00058 30.7 3.9 26 132-160 57-82 (314)
143 2qz4_A Paraplegin; AAA+, SPG7, 46.6 47 0.0016 25.9 6.4 24 124-147 40-63 (262)
144 3vfd_A Spastin; ATPase, microt 46.6 36 0.0012 29.0 6.1 41 124-170 149-189 (389)
145 1g3q_A MIND ATPase, cell divis 45.9 27 0.00091 27.1 4.8 34 126-162 6-39 (237)
146 3q9l_A Septum site-determining 45.5 27 0.00091 27.4 4.8 33 126-161 6-38 (260)
147 1hyq_A MIND, cell division inh 45.1 31 0.0011 27.2 5.2 33 126-161 6-38 (263)
148 3kjh_A CO dehydrogenase/acetyl 44.6 13 0.00046 28.8 2.8 28 130-160 7-34 (254)
149 3e2i_A Thymidine kinase; Zn-bi 44.3 30 0.001 28.0 4.8 34 127-163 32-65 (219)
150 1ofh_A ATP-dependent HSL prote 44.1 22 0.00075 28.6 4.1 25 123-147 50-74 (310)
151 2chg_A Replication factor C sm 43.9 32 0.0011 25.6 4.8 23 125-147 40-62 (226)
152 1cp2_A CP2, nitrogenase iron p 43.9 20 0.00068 28.5 3.8 27 131-160 9-35 (269)
153 1njg_A DNA polymerase III subu 43.8 51 0.0018 24.6 6.1 23 125-147 47-69 (250)
154 3n70_A Transport activator; si 43.7 38 0.0013 24.4 5.0 40 120-162 21-60 (145)
155 2r8r_A Sensor protein; KDPD, P 43.5 30 0.001 28.1 4.8 43 126-170 9-52 (228)
156 1xp8_A RECA protein, recombina 43.5 35 0.0012 29.4 5.5 43 123-168 74-116 (366)
157 2oze_A ORF delta'; para, walke 43.0 22 0.00074 28.9 3.9 28 130-160 44-71 (298)
158 3co5_A Putative two-component 43.0 20 0.00069 25.9 3.4 23 121-143 25-47 (143)
159 2orv_A Thymidine kinase; TP4A 42.3 31 0.0011 28.2 4.7 34 127-163 23-56 (234)
160 1sxj_C Activator 1 40 kDa subu 42.2 32 0.0011 28.6 4.9 40 109-148 30-71 (340)
161 3cf0_A Transitional endoplasmi 42.0 29 0.001 28.5 4.6 43 122-170 48-90 (301)
162 2ph1_A Nucleotide-binding prot 41.5 33 0.0011 27.4 4.8 33 126-161 22-54 (262)
163 3end_A Light-independent proto 41.3 24 0.00082 28.9 3.9 28 130-160 48-75 (307)
164 1q57_A DNA primase/helicase; d 40.6 51 0.0017 29.2 6.3 40 122-163 241-280 (503)
165 2afh_E Nitrogenase iron protei 40.5 25 0.00087 28.4 3.9 27 131-160 10-36 (289)
166 3d8b_A Fidgetin-like protein 1 40.1 19 0.00065 30.6 3.2 41 123-169 117-157 (357)
167 4dzz_A Plasmid partitioning pr 39.1 33 0.0011 25.8 4.2 39 129-170 8-48 (206)
168 1lv7_A FTSH; alpha/beta domain 38.6 54 0.0019 25.8 5.6 23 124-146 46-68 (257)
169 2w0m_A SSO2452; RECA, SSPF, un 38.6 93 0.0032 23.4 6.9 44 122-168 22-65 (235)
170 3cio_A ETK, tyrosine-protein k 38.2 43 0.0015 27.7 5.1 32 127-161 109-140 (299)
171 3ea0_A ATPase, para family; al 37.6 41 0.0014 26.0 4.7 34 126-161 8-41 (245)
172 2z4s_A Chromosomal replication 37.4 1.1E+02 0.0039 26.6 8.0 26 124-149 131-156 (440)
173 3u61_B DNA polymerase accessor 36.6 49 0.0017 27.0 5.2 21 126-146 51-71 (324)
174 3hws_A ATP-dependent CLP prote 36.5 56 0.0019 27.4 5.6 23 124-146 52-74 (363)
175 3ug7_A Arsenical pump-driving 36.3 78 0.0027 26.7 6.5 33 126-161 29-61 (349)
176 2owm_A Nckin3-434, related to 36.3 33 0.0011 30.6 4.2 34 108-141 121-155 (443)
177 1zu4_A FTSY; GTPase, signal re 36.1 1.4E+02 0.0048 24.9 8.1 30 129-161 111-140 (320)
178 3ice_A Transcription terminati 35.9 76 0.0026 28.2 6.5 39 107-146 159-197 (422)
179 1iqp_A RFCS; clamp loader, ext 35.9 32 0.0011 27.8 3.9 23 125-147 48-70 (327)
180 3cwq_A Para family chromosome 35.4 51 0.0017 25.4 4.8 41 127-171 5-47 (209)
181 2cvh_A DNA repair and recombin 35.3 70 0.0024 24.0 5.6 44 122-171 19-64 (220)
182 2bjv_A PSP operon transcriptio 35.2 51 0.0018 26.1 5.0 30 115-144 21-50 (265)
183 3te6_A Regulatory protein SIR3 35.1 47 0.0016 28.1 4.9 45 106-150 25-72 (318)
184 4fcw_A Chaperone protein CLPB; 35.0 31 0.001 27.9 3.6 24 125-148 49-72 (311)
185 3zq6_A Putative arsenical pump 34.9 51 0.0017 27.5 5.1 33 126-161 17-49 (324)
186 3nwn_A Kinesin-like protein KI 34.7 35 0.0012 29.5 4.0 28 115-142 96-124 (359)
187 3bfv_A CAPA1, CAPB2, membrane 33.9 50 0.0017 26.8 4.8 31 127-160 87-117 (271)
188 3la6_A Tyrosine-protein kinase 33.6 54 0.0018 27.0 4.9 32 126-160 96-127 (286)
189 3gbj_A KIF13B protein; kinesin 33.2 46 0.0016 28.7 4.5 33 109-141 78-111 (354)
190 3pg5_A Uncharacterized protein 32.9 29 0.001 29.5 3.3 27 131-160 10-36 (361)
191 1x88_A Kinesin-like protein KI 32.9 42 0.0014 29.0 4.2 34 108-141 73-107 (359)
192 2wbe_C Bipolar kinesin KRP-130 32.2 39 0.0013 29.4 3.9 34 108-141 85-119 (373)
193 1jr3_A DNA polymerase III subu 31.7 88 0.003 25.7 6.1 22 126-147 41-62 (373)
194 1u94_A RECA protein, recombina 31.6 68 0.0023 27.4 5.4 38 122-162 62-99 (356)
195 2xj4_A MIPZ; replication, cell 31.6 47 0.0016 26.9 4.2 41 128-171 10-53 (286)
196 1um8_A ATP-dependent CLP prote 31.4 75 0.0026 26.7 5.6 23 124-146 73-95 (376)
197 2qby_B CDC6 homolog 3, cell di 31.4 92 0.0031 25.7 6.1 45 105-149 24-71 (384)
198 3dc4_A Kinesin-like protein NO 31.3 39 0.0013 29.0 3.8 33 108-140 79-112 (344)
199 1wcv_1 SOJ, segregation protei 31.2 38 0.0013 26.9 3.5 31 128-161 12-42 (257)
200 1bg2_A Kinesin; motor protein, 31.1 44 0.0015 28.4 4.0 35 108-142 62-97 (325)
201 2nr8_A Kinesin-like protein KI 30.8 44 0.0015 28.9 4.0 34 108-141 88-122 (358)
202 3nbx_X ATPase RAVA; AAA+ ATPas 30.7 27 0.00093 31.5 2.8 29 117-145 35-63 (500)
203 3ez2_A Plasmid partition prote 30.6 38 0.0013 29.0 3.6 23 127-149 113-135 (398)
204 2iut_A DNA translocase FTSK; n 30.6 72 0.0024 29.5 5.6 41 124-164 215-256 (574)
205 1u0j_A DNA replication protein 30.6 37 0.0013 28.2 3.4 22 125-146 106-127 (267)
206 2y65_A Kinesin, kinesin heavy 30.3 46 0.0016 28.9 4.0 34 108-141 69-103 (365)
207 2v1u_A Cell division control p 30.1 64 0.0022 26.5 4.9 26 123-148 44-69 (387)
208 3vkw_A Replicase large subunit 30.0 32 0.0011 30.8 3.1 42 126-175 164-206 (446)
209 1ojl_A Transcriptional regulat 29.7 1.4E+02 0.0049 24.4 7.0 37 121-160 23-59 (304)
210 3hu3_A Transitional endoplasmi 29.6 46 0.0016 29.8 4.1 24 122-145 237-260 (489)
211 2zfi_A Kinesin-like protein KI 29.5 42 0.0014 29.0 3.7 34 108-141 74-108 (366)
212 4a14_A Kinesin, kinesin-like p 29.4 48 0.0017 28.3 4.0 34 108-141 68-102 (344)
213 1v8k_A Kinesin-like protein KI 29.2 39 0.0013 29.9 3.4 28 115-142 146-174 (410)
214 3b6u_A Kinesin-like protein KI 29.1 49 0.0017 28.8 4.0 35 108-142 86-121 (372)
215 1t5c_A CENP-E protein, centrom 29.0 37 0.0013 29.3 3.2 27 115-141 69-96 (349)
216 3l0o_A Transcription terminati 28.9 84 0.0029 28.0 5.5 40 107-147 160-199 (427)
217 1goj_A Kinesin, kinesin heavy 28.9 50 0.0017 28.5 4.0 35 108-142 65-100 (355)
218 2woo_A ATPase GET3; tail-ancho 28.8 68 0.0023 26.8 4.9 32 126-160 22-53 (329)
219 2zr9_A Protein RECA, recombina 28.8 1E+02 0.0035 26.1 6.0 36 125-163 63-98 (349)
220 3lre_A Kinesin-like protein KI 28.6 42 0.0014 28.9 3.5 27 115-141 97-124 (355)
221 2chq_A Replication factor C sm 28.6 68 0.0023 25.6 4.7 23 125-147 40-62 (319)
222 1tue_A Replication protein E1; 28.6 74 0.0025 25.5 4.7 23 125-147 60-82 (212)
223 3cf2_A TER ATPase, transitiona 28.3 23 0.0008 34.1 2.0 42 123-170 511-552 (806)
224 1wx1_A Nicotinate-nucleotide-- 28.3 69 0.0024 27.5 4.8 38 112-149 143-180 (335)
225 2obn_A Hypothetical protein; s 28.2 47 0.0016 28.7 3.7 27 126-152 156-182 (349)
226 1vma_A Cell division protein F 28.2 96 0.0033 25.9 5.6 31 128-161 109-139 (306)
227 3k9g_A PF-32 protein; ssgcid, 28.0 51 0.0018 26.1 3.8 30 127-160 32-61 (267)
228 2vvg_A Kinesin-2; motor protei 27.4 46 0.0016 28.7 3.5 27 115-141 81-108 (350)
229 1xtt_A Probable uracil phospho 27.4 2.1E+02 0.0074 22.6 7.4 55 125-184 135-190 (216)
230 3pxg_A Negative regulator of g 27.2 66 0.0023 28.3 4.7 26 123-148 201-226 (468)
231 1d2n_A N-ethylmaleimide-sensit 27.1 47 0.0016 26.5 3.4 22 125-146 66-87 (272)
232 2xsa_A Ogoga, hyaluronoglucosa 26.6 1.7E+02 0.0057 26.2 7.1 64 125-189 110-194 (447)
233 3igf_A ALL4481 protein; two-do 26.6 41 0.0014 29.2 3.1 35 131-168 10-45 (374)
234 4hdr_B ARSB; transferase; HET: 26.6 76 0.0026 27.5 4.7 34 117-150 157-190 (350)
235 4hdr_A ARSA; transferase; HET: 26.5 66 0.0022 27.9 4.3 37 113-149 160-196 (348)
236 2ck3_A ATP synthase subunit al 26.4 1.4E+02 0.0048 27.1 6.7 39 110-149 150-188 (510)
237 3io3_A DEHA2D07832P; chaperone 26.4 49 0.0017 28.2 3.6 22 127-148 22-43 (348)
238 2ffh_A Protein (FFH); SRP54, s 26.4 1.2E+02 0.0042 26.6 6.2 32 128-162 103-134 (425)
239 1ihu_A Arsenical pump-driving 25.5 79 0.0027 28.6 5.0 33 126-161 11-43 (589)
240 2j37_W Signal recognition part 25.4 2E+02 0.0067 25.9 7.5 32 128-162 106-137 (504)
241 1l5o_A COBT, nicotinate-nucleo 25.3 75 0.0026 27.6 4.5 38 112-149 155-192 (356)
242 3sqw_A ATP-dependent RNA helic 24.7 1.8E+02 0.0063 25.9 7.2 55 136-190 270-326 (579)
243 4etp_A Kinesin-like protein KA 24.6 77 0.0026 27.7 4.5 26 116-141 133-159 (403)
244 1hqc_A RUVB; extended AAA-ATPa 24.6 1E+02 0.0035 24.8 5.1 24 124-147 39-62 (324)
245 2r62_A Cell division protease 24.6 38 0.0013 26.8 2.4 25 123-147 44-68 (268)
246 3k1j_A LON protease, ATP-depen 24.6 1.2E+02 0.0043 27.5 6.1 36 111-146 48-83 (604)
247 3bfn_A Kinesin-like protein KI 24.0 39 0.0013 29.7 2.4 26 116-141 91-117 (388)
248 2woj_A ATPase GET3; tail-ancho 23.8 88 0.003 26.5 4.7 33 126-161 21-55 (354)
249 2ius_A DNA translocase FTSK; n 23.7 1.2E+02 0.0043 27.4 5.8 42 123-164 167-209 (512)
250 3pfi_A Holliday junction ATP-d 23.3 1.4E+02 0.0047 24.3 5.7 22 124-145 56-77 (338)
251 1sxj_A Activator 1 95 kDa subu 23.1 1E+02 0.0036 27.4 5.2 24 124-147 78-101 (516)
252 3fkq_A NTRC-like two-domain pr 23.1 94 0.0032 26.3 4.7 33 126-161 147-179 (373)
253 2heh_A KIF2C protein; kinesin, 23.0 55 0.0019 28.6 3.2 28 115-142 126-154 (387)
254 1e9r_A Conjugal transfer prote 22.9 93 0.0032 26.7 4.7 38 124-164 54-91 (437)
255 1fnn_A CDC6P, cell division co 22.5 1.6E+02 0.0054 24.2 6.0 23 125-147 46-68 (389)
256 2xxa_A Signal recognition part 22.5 1.1E+02 0.0038 26.9 5.1 31 129-162 106-137 (433)
257 2g0t_A Conserved hypothetical 22.5 70 0.0024 27.6 3.7 27 126-152 173-199 (350)
258 3b9p_A CG5977-PA, isoform A; A 22.5 59 0.002 26.1 3.1 24 123-146 54-77 (297)
259 1f9v_A Kinesin-like protein KA 22.4 81 0.0028 27.0 4.1 25 117-141 78-103 (347)
260 1sxj_B Activator 1 37 kDa subu 22.2 1.6E+02 0.0053 23.5 5.7 22 126-147 45-66 (323)
261 2gno_A DNA polymerase III, gam 21.8 1.7E+02 0.0059 24.1 6.0 38 109-146 2-41 (305)
262 3iqw_A Tail-anchored protein t 21.7 98 0.0033 26.1 4.5 32 127-161 20-51 (334)
263 2rep_A Kinesin-like protein KI 21.6 83 0.0028 27.3 4.1 28 115-142 107-135 (376)
264 4ag6_A VIRB4 ATPase, type IV s 21.6 1.8E+02 0.006 24.5 6.2 48 122-172 34-81 (392)
265 3u4g_A NAMN:DMB phosphoribosyl 21.5 94 0.0032 26.7 4.3 36 111-147 123-158 (337)
266 3dmp_A Uracil phosphoribosyltr 21.5 3E+02 0.01 21.7 7.2 59 123-184 129-188 (217)
267 3ez9_A Para; DNA binding, wing 21.1 37 0.0013 29.1 1.7 20 129-148 118-137 (403)
268 1ry6_A Internal kinesin; kines 20.9 65 0.0022 27.8 3.2 27 116-142 76-104 (360)
269 3t0q_A AGR253WP; kinesin, alph 20.7 97 0.0033 26.5 4.3 26 116-141 78-104 (349)
270 4a0g_A Adenosylmethionine-8-am 20.4 49 0.0017 31.8 2.5 25 126-150 38-62 (831)
271 2qby_A CDC6 homolog 1, cell di 20.2 2.2E+02 0.0076 23.0 6.4 26 124-149 46-71 (386)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-23 Score=202.73 Aligned_cols=110 Identities=41% Similarity=0.828 Sum_probs=99.2
Q ss_pred hccCCCCccccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHH
Q psy14604 91 YEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWE 170 (209)
Q Consensus 91 ~~~~p~~~~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~ 170 (209)
+..+|+++ .+..|+|||.+||+||...+..+.+|||||+||||||+|+|++|..++......+|+|||||.+++.||.
T Consensus 225 ~~~~p~~~--~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~ 302 (800)
T 3mwy_W 225 LSVQPPFI--KGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWL 302 (800)
T ss_dssp CSSCCTTC--CSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHH
T ss_pred cccCCCcc--CCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHH
Confidence 34556655 3578999999999999999999999999999999999999999998887777778999999999999999
Q ss_pred HHHHHhCCCceEEEEEcChhHHHHHhhhceec
Q psy14604 171 REFETWAPDFYVVTYVGDKDCRIVLRDHDISW 202 (209)
Q Consensus 171 ~E~~~~~~~l~v~~y~G~~~~r~~i~~~~~~~ 202 (209)
+||.+|+|++++++|+|+...|..++.+++..
T Consensus 303 ~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~ 334 (800)
T 3mwy_W 303 DTFEKWAPDLNCICYMGNQKSRDTIREYEFYT 334 (800)
T ss_dssp HHHHHHSTTCCEEECCCSSHHHHHHHHHHSCS
T ss_pred HHHHHHCCCceEEEEeCCHHHHHHHHHHHhhc
Confidence 99999999999999999999999998877654
No 2
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.80 E-value=1.2e-19 Score=165.13 Aligned_cols=90 Identities=37% Similarity=0.652 Sum_probs=80.6
Q ss_pred ccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhCCC
Q psy14604 100 DTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPD 179 (209)
Q Consensus 100 ~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~~ 179 (209)
.+...|+|||.+|+.||...+..+.+|||||+||+|||+++++++..+.... ..+++|||||.+++.||.+||.+|+|+
T Consensus 33 ~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P~~l~~qw~~e~~~~~~~ 111 (500)
T 1z63_A 33 NIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN-ELTPSLVICPLSVLKNWEEELSKFAPH 111 (500)
T ss_dssp SCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT-CCSSEEEEECSTTHHHHHHHHHHHCTT
T ss_pred hhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC-CCCCEEEEccHHHHHHHHHHHHHHCCC
Confidence 3557899999999999988888889999999999999999999998876553 345799999999999999999999999
Q ss_pred ceEEEEEcChh
Q psy14604 180 FYVVTYVGDKD 190 (209)
Q Consensus 180 l~v~~y~G~~~ 190 (209)
+.+.+|+|+..
T Consensus 112 ~~v~~~~g~~~ 122 (500)
T 1z63_A 112 LRFAVFHEDRS 122 (500)
T ss_dssp SCEEECSSSTT
T ss_pred ceEEEEecCch
Confidence 99999999863
No 3
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.80 E-value=7e-20 Score=173.20 Aligned_cols=89 Identities=33% Similarity=0.496 Sum_probs=74.6
Q ss_pred cCCCCchHHHHHHHHHHHhh-----cCCCceEEEcCCCCchHHHHHHHHHHHHhhCCC----CCcEEEEeCcccHHHHHH
Q psy14604 101 TGMQLHAYQLEGINWLRYSW-----GQNIDTILADEMGLGKTIQTITFLYSLFKEGHC----KGPFLVSAPLSTIINWER 171 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~-----~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~----~~~~LIV~P~sl~~qW~~ 171 (209)
+...|+|||.+||+||..++ ..+.||||||+||||||+|+|+++..+...... .+++|||||.+++.||.+
T Consensus 52 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~ 131 (644)
T 1z3i_X 52 LSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYN 131 (644)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHH
Confidence 45789999999999998765 456789999999999999999999998776533 345999999999999999
Q ss_pred HHHHhCCC-ceEEEEEcCh
Q psy14604 172 EFETWAPD-FYVVTYVGDK 189 (209)
Q Consensus 172 E~~~~~~~-l~v~~y~G~~ 189 (209)
||.+|++. +.++.++|..
T Consensus 132 E~~~~~~~~~~~~~~~~g~ 150 (644)
T 1z3i_X 132 EVGKWLGGRVQPVAIDGGS 150 (644)
T ss_dssp HHHHHHGGGCCEEEECSSC
T ss_pred HHHHHcCCCeeEEEEeCCC
Confidence 99999864 6666666543
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.55 E-value=1.2e-14 Score=143.26 Aligned_cols=90 Identities=21% Similarity=0.238 Sum_probs=76.4
Q ss_pred cccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhCC
Q psy14604 99 DDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAP 178 (209)
Q Consensus 99 ~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~ 178 (209)
.+....|+|||.+++.|+... ...++||||+||+|||+++++++..++..+. .+++|||||.+|+.||..||.+|+
T Consensus 148 ~~~~~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~~rvLIVvP~sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 148 RGQRTSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLSGA-AERVLIIVPETLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCSSCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-CCCEEEECCTTTHHHHHHHHHHHS-
T ss_pred cCCCCCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEeCHHHHHHHHHHHHHHh-
Confidence 345688999999999998753 3668999999999999999999988876653 346999999999999999999988
Q ss_pred CceEEEEEcChhHH
Q psy14604 179 DFYVVTYVGDKDCR 192 (209)
Q Consensus 179 ~l~v~~y~G~~~~r 192 (209)
++.+.+|+|+....
T Consensus 224 ~l~v~v~~~~~~~~ 237 (968)
T 3dmq_A 224 NLRFALFDDERYAE 237 (968)
T ss_dssp CCCCEECCHHHHHH
T ss_pred CCCEEEEccchhhh
Confidence 78888888876543
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.50 E-value=2.3e-14 Score=126.51 Aligned_cols=85 Identities=20% Similarity=0.251 Sum_probs=72.0
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC--
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA-- 177 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~-- 177 (209)
....|+|||.+++.|+.. + ++||+++||+|||+++++++...+.. ...++|||||. +|+.||.++|.+|+
T Consensus 6 ~~~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~ 78 (494)
T 1wp9_A 6 DLIQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTK--YGGKVLMLAPTKPLVLQHAESFRRLFNL 78 (494)
T ss_dssp HHHCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHH--SCSCEEEECSSHHHHHHHHHHHHHHBCS
T ss_pred CCCCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHHhCc
Confidence 346899999999998863 3 89999999999999999998777652 34579999997 89999999999998
Q ss_pred CCceEEEEEcChhHH
Q psy14604 178 PDFYVVTYVGDKDCR 192 (209)
Q Consensus 178 ~~l~v~~y~G~~~~r 192 (209)
+...+.+|+|.....
T Consensus 79 ~~~~v~~~~g~~~~~ 93 (494)
T 1wp9_A 79 PPEKIVALTGEKSPE 93 (494)
T ss_dssp CGGGEEEECSCSCHH
T ss_pred chhheEEeeCCcchh
Confidence 667999999987544
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.26 E-value=1e-11 Score=111.81 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=64.9
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCc
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDF 180 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l 180 (209)
...|+|||.+++.++. .+..+||+++||+|||++++.++..+ ..++|||||. +|+.||.++|.+| ++
T Consensus 91 ~~~l~~~Q~~ai~~i~----~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 91 EISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCBCHHHHHHHHHHT----TTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCcCHHHHHHHHHHH----hcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 4689999999998765 45569999999999999999887765 3579999998 8999999999996 56
Q ss_pred e-EEEEEcChh
Q psy14604 181 Y-VVTYVGDKD 190 (209)
Q Consensus 181 ~-v~~y~G~~~ 190 (209)
. +.+++|...
T Consensus 159 ~~v~~~~g~~~ 169 (472)
T 2fwr_A 159 EYVGEFSGRIK 169 (472)
T ss_dssp GGEEEBSSSCB
T ss_pred cceEEECCCcC
Confidence 7 888877654
No 7
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.22 E-value=3.4e-11 Score=109.08 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=72.6
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCC--CCcEEEEeCc-ccHHHHHHHHHHhCC-
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC--KGPFLVSAPL-STIINWEREFETWAP- 178 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~--~~~~LIV~P~-sl~~qW~~E~~~~~~- 178 (209)
+.|+|||.+++.++. .+..+|++++||+|||++++..+......... ..++|||||. .|+.||.++|.+|++
T Consensus 3 ~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 579999999999886 66789999999999999998888776655321 4569999997 889999999999975
Q ss_pred -CceEEEEEcChhHH
Q psy14604 179 -DFYVVTYVGDKDCR 192 (209)
Q Consensus 179 -~l~v~~y~G~~~~r 192 (209)
++.+..++|+....
T Consensus 79 ~~~~~~~~~g~~~~~ 93 (555)
T 3tbk_A 79 LGYNIASISGATSDS 93 (555)
T ss_dssp TTCCEEEECTTTGGG
T ss_pred CCcEEEEEcCCCcch
Confidence 78999999988543
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.19 E-value=5.1e-11 Score=108.29 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=68.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCC--CCcEEEEeCc-ccHHHHHHHHHHhCC-
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC--KGPFLVSAPL-STIINWEREFETWAP- 178 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~--~~~~LIV~P~-sl~~qW~~E~~~~~~- 178 (209)
..|+|||.+++.++. .+..+|++++||+|||++++..+...+..... ...+|||||. .|+.||.++|.+|++
T Consensus 6 ~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 679999999999886 56789999999999999998887776655331 4569999997 889999999999986
Q ss_pred -CceEEEEEcChhHH
Q psy14604 179 -DFYVVTYVGDKDCR 192 (209)
Q Consensus 179 -~l~v~~y~G~~~~r 192 (209)
++.+..++|+....
T Consensus 82 ~~~~~~~~~g~~~~~ 96 (556)
T 4a2p_A 82 QGYSVQGISGENFSN 96 (556)
T ss_dssp GTCCEEECCCC----
T ss_pred cCceEEEEeCCCCcc
Confidence 78999999987443
No 9
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.17 E-value=4.5e-11 Score=101.19 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=63.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC--CC
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA--PD 179 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~--~~ 179 (209)
..|+|||.+++.++.. +..+||+++||+|||+++++++......+ .+++|||||. +|+.||.++|.+|. +.
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 5799999999997763 35689999999999999988876655443 3479999996 78899999999996 33
Q ss_pred ceEEEEEcC
Q psy14604 180 FYVVTYVGD 188 (209)
Q Consensus 180 l~v~~y~G~ 188 (209)
..+..+.|+
T Consensus 186 ~~~~~~~~~ 194 (282)
T 1rif_A 186 AMIKKIGGG 194 (282)
T ss_dssp GGEEECSTT
T ss_pred ceEEEEeCC
Confidence 455555444
No 10
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.16 E-value=1.4e-10 Score=109.14 Aligned_cols=84 Identities=20% Similarity=0.184 Sum_probs=70.6
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCC--CCcEEEEeCc-ccHHHHHHHHHHhCC-
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC--KGPFLVSAPL-STIINWEREFETWAP- 178 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~--~~~~LIV~P~-sl~~qW~~E~~~~~~- 178 (209)
..|+|||.+++.++. .+..+|++++||+|||++++.++......... .+++|||||. +|+.||.++|.+|++
T Consensus 12 ~~lr~~Q~~~i~~~l----~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPAM----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 569999999999987 57789999999999999998888766554322 2579999996 899999999999986
Q ss_pred -CceEEEEEcChh
Q psy14604 179 -DFYVVTYVGDKD 190 (209)
Q Consensus 179 -~l~v~~y~G~~~ 190 (209)
++.+..++|+..
T Consensus 88 ~~~~v~~~~g~~~ 100 (696)
T 2ykg_A 88 HGYRVTGISGATA 100 (696)
T ss_dssp TTCCEEEECSSSC
T ss_pred CCceEEEEeCCcc
Confidence 789999999764
No 11
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.12 E-value=2.4e-10 Score=95.15 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=62.3
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCC
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPD 179 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~ 179 (209)
....|++||.+++..+. .+..+||+.++|+|||+++++++..+ ..++|||||. .++.||.++|.+| +
T Consensus 90 ~~~~l~~~Q~~ai~~~~----~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~--~ 157 (237)
T 2fz4_A 90 AEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--G 157 (237)
T ss_dssp CCCCCCHHHHHHHHHHT----TTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG--C
T ss_pred CCCCcCHHHHHHHHHHH----hCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC--C
Confidence 34689999999998654 44569999999999999998887653 3579999997 7889999999995 5
Q ss_pred ce-EEEEEcCh
Q psy14604 180 FY-VVTYVGDK 189 (209)
Q Consensus 180 l~-v~~y~G~~ 189 (209)
+. +..++|..
T Consensus 158 ~~~v~~~~g~~ 168 (237)
T 2fz4_A 158 EEYVGEFSGRI 168 (237)
T ss_dssp GGGEEEESSSC
T ss_pred CCeEEEEeCCC
Confidence 66 77777654
No 12
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.10 E-value=2.4e-10 Score=110.04 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=70.1
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCC--CCcEEEEeCc-ccHHHHHHHHHHhCC
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC--KGPFLVSAPL-STIINWEREFETWAP 178 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~--~~~~LIV~P~-sl~~qW~~E~~~~~~ 178 (209)
...|+|||.+++.++. .+..+|++++||+|||++++..+...+..... .+++|||||. .|+.||.++|.+|++
T Consensus 246 ~~~l~~~Q~~~i~~~l----~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHH----hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 3679999999999886 56789999999999999998888777665421 4579999995 589999999999986
Q ss_pred --CceEEEEEcChhHH
Q psy14604 179 --DFYVVTYVGDKDCR 192 (209)
Q Consensus 179 --~l~v~~y~G~~~~r 192 (209)
++.+..++|+....
T Consensus 322 ~~~~~v~~~~g~~~~~ 337 (797)
T 4a2q_A 322 RQGYSVQGISGENFSN 337 (797)
T ss_dssp GGTCCEEEECCC----
T ss_pred cCCceEEEEeCCcchh
Confidence 89999999988544
No 13
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.10 E-value=5.6e-11 Score=111.89 Aligned_cols=85 Identities=20% Similarity=0.277 Sum_probs=67.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC---CCCCcEEEEeCc-ccHHHH-HHHHHHhC
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG---HCKGPFLVSAPL-STIINW-EREFETWA 177 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~---~~~~~~LIV~P~-sl~~qW-~~E~~~~~ 177 (209)
+.|+|||.+++.++. .+..+|++++||+|||++++.++..++... ...+++|||||. +|+.|| .++|.+|+
T Consensus 6 ~~l~~~Q~~~i~~il----~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPAL----EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHH----SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHH----hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 679999999999987 567899999999999999988876655432 122569999996 588999 99999999
Q ss_pred CC-ceEEEEEcChhH
Q psy14604 178 PD-FYVVTYVGDKDC 191 (209)
Q Consensus 178 ~~-l~v~~y~G~~~~ 191 (209)
+. +.+..++|+...
T Consensus 82 ~~~~~v~~~~g~~~~ 96 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQL 96 (699)
T ss_dssp TTTSCEEEEC----C
T ss_pred CcCceEEEEeCCcch
Confidence 76 999999998654
No 14
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.10 E-value=3.9e-10 Score=98.05 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=69.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC---CC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA---PD 179 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~---~~ 179 (209)
.|+|||.+++.++. .+..+|+..++|.|||++++..+...+.......++|||||. .|+.||.+++.+|. ++
T Consensus 30 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHT----TTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 49999999998876 567899999999999998877776655443344579999997 78899999999996 57
Q ss_pred ceEEEEEcChhHH
Q psy14604 180 FYVVTYVGDKDCR 192 (209)
Q Consensus 180 l~v~~y~G~~~~r 192 (209)
+++.+++|+....
T Consensus 106 ~~~~~~~g~~~~~ 118 (391)
T 1xti_A 106 VKVAVFFGGLSIK 118 (391)
T ss_dssp CCEEEECTTSCHH
T ss_pred eEEEEEeCCCCHH
Confidence 8999999876543
No 15
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.09 E-value=6.5e-10 Score=90.10 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=67.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC---CC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA---PD 179 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~---~~ 179 (209)
.|+|||.+++..+. .+..+|+...+|.|||+.++..+............+|||||. .++.||.+++.+|. ++
T Consensus 36 ~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 48999999998776 567799999999999998877766654433333469999996 78899999999996 47
Q ss_pred ceEEEEEcChhH
Q psy14604 180 FYVVTYVGDKDC 191 (209)
Q Consensus 180 l~v~~y~G~~~~ 191 (209)
+.+.+++|+...
T Consensus 112 ~~v~~~~g~~~~ 123 (220)
T 1t6n_A 112 VKVAVFFGGLSI 123 (220)
T ss_dssp CCEEEESCCSCH
T ss_pred ceEEEEeCCCCh
Confidence 899999987553
No 16
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.08 E-value=1.6e-10 Score=105.02 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=67.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHh--CCC
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETW--APD 179 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~--~~~ 179 (209)
..|+|||.+++.++.. +..+||+++||+|||++++.++....... .+++|||||. .|+.||.++|.+| ++.
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 5899999999998863 36799999999999999988776665543 3479999996 6889999999999 566
Q ss_pred ceEEEEEcChhH
Q psy14604 180 FYVVTYVGDKDC 191 (209)
Q Consensus 180 l~v~~y~G~~~~ 191 (209)
..+..++|....
T Consensus 186 ~~v~~~~~~~~~ 197 (510)
T 2oca_A 186 AMIKKIGGGASK 197 (510)
T ss_dssp GGEEECGGGCCT
T ss_pred cceEEEecCCcc
Confidence 778777776543
No 17
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.08 E-value=7.7e-10 Score=88.46 Aligned_cols=85 Identities=20% Similarity=0.166 Sum_probs=68.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC---CCCCcEEEEeCc-ccHHHHHHHHHHhCC
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG---HCKGPFLVSAPL-STIINWEREFETWAP 178 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~---~~~~~~LIV~P~-sl~~qW~~E~~~~~~ 178 (209)
..|+|||.+++..+. .+..+++...+|.|||+.++..+....... .....+|||||. .++.||.+++..+++
T Consensus 22 ~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 97 (207)
T 2gxq_A 22 TTPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP 97 (207)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh
Confidence 368999999998876 567899999999999998766655544321 123469999997 788999999999998
Q ss_pred CceEEEEEcChhH
Q psy14604 179 DFYVVTYVGDKDC 191 (209)
Q Consensus 179 ~l~v~~y~G~~~~ 191 (209)
.+.+..++|+...
T Consensus 98 ~~~~~~~~~~~~~ 110 (207)
T 2gxq_A 98 HLKVVAVYGGTGY 110 (207)
T ss_dssp TSCEEEECSSSCS
T ss_pred cceEEEEECCCCh
Confidence 8999998887643
No 18
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.07 E-value=2e-10 Score=112.80 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=68.9
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCC--CCcEEEEeCc-ccHHHHHHHHHHhCC
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC--KGPFLVSAPL-STIINWEREFETWAP 178 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~--~~~~LIV~P~-sl~~qW~~E~~~~~~ 178 (209)
...|+|||.+++.++. .+..+|++++||+|||++++..+...+..... .+++|||||. .|+.||.++|.+|++
T Consensus 246 ~~~~r~~Q~~ai~~il----~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4679999999999886 56789999999999999988877665544321 4579999995 589999999999986
Q ss_pred --CceEEEEEcChhHH
Q psy14604 179 --DFYVVTYVGDKDCR 192 (209)
Q Consensus 179 --~l~v~~y~G~~~~r 192 (209)
++.+.+++|+...+
T Consensus 322 ~~~~~v~~~~G~~~~~ 337 (936)
T 4a2w_A 322 RQGYSVQGISGENFSN 337 (936)
T ss_dssp TTTCCEEEECCC----
T ss_pred ccCceEEEEECCcchh
Confidence 78999999988544
No 19
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.03 E-value=5.1e-10 Score=89.64 Aligned_cols=85 Identities=20% Similarity=0.272 Sum_probs=66.1
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC---CCCCcEEEEeCc-ccHHH-HHHHHHHh
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG---HCKGPFLVSAPL-STIIN-WEREFETW 176 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~---~~~~~~LIV~P~-sl~~q-W~~E~~~~ 176 (209)
...|+|||.+++..+. .+..+|+...+|.|||+.++.++..+.... ....++|||||. .++.| |.+++..|
T Consensus 31 ~~~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 3679999999998776 567899999999999999988876654432 224579999997 66788 99999999
Q ss_pred CC-CceEEEEEcChh
Q psy14604 177 AP-DFYVVTYVGDKD 190 (209)
Q Consensus 177 ~~-~l~v~~y~G~~~ 190 (209)
.. .+.+..++|+..
T Consensus 107 ~~~~~~v~~~~g~~~ 121 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQ 121 (216)
T ss_dssp HTTTSCEEECCC---
T ss_pred hccCceEEEEeCCcc
Confidence 74 578888887653
No 20
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.99 E-value=6.2e-10 Score=103.30 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=54.4
Q ss_pred ccCCCCchHHHHHHHHHHHhhcCC-CceEEEcCCCCchHHHHHHHHHHHHhhCC------CCCcEEEEeC-cccHHHHH-
Q psy14604 100 DTGMQLHAYQLEGINWLRYSWGQN-IDTILADEMGLGKTIQTITFLYSLFKEGH------CKGPFLVSAP-LSTIINWE- 170 (209)
Q Consensus 100 ~~~~~L~~~Q~~gv~~l~~~~~~~-~g~iLaD~mGLGKT~q~ia~l~~~~~~~~------~~~~~LIV~P-~sl~~qW~- 170 (209)
..+..|+|||.++++++...+..+ ..++|+++||+|||++++.++..+...+. ...++||||| .+|+.||.
T Consensus 174 ~~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 174 VSGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp C----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC----------
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHH
Confidence 445789999999999998776665 45899999999999999998888776541 3457999999 78889999
Q ss_pred HHHHHhCC
Q psy14604 171 REFETWAP 178 (209)
Q Consensus 171 ~E~~~~~~ 178 (209)
++|..|.+
T Consensus 254 ~~~~~~~~ 261 (590)
T 3h1t_A 254 KTFTPFGD 261 (590)
T ss_dssp -CCTTTCS
T ss_pred HHHHhcch
Confidence 88888864
No 21
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.96 E-value=4.7e-09 Score=86.02 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=66.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC---CC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA---PD 179 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~---~~ 179 (209)
.|+|||.+++..+. .+...|+...+|.|||+..+..+............+|||||. .|+.||.+++..|. ++
T Consensus 46 ~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGR----CGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 49999999998776 567899999999999998655444433322234569999996 78899999999986 47
Q ss_pred ceEEEEEcChhHH
Q psy14604 180 FYVVTYVGDKDCR 192 (209)
Q Consensus 180 l~v~~y~G~~~~r 192 (209)
+.+.+++|+....
T Consensus 122 ~~~~~~~g~~~~~ 134 (230)
T 2oxc_A 122 LECHVFIGGTPLS 134 (230)
T ss_dssp CCEEEECTTSCHH
T ss_pred ceEEEEeCCCCHH
Confidence 8899999876543
No 22
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.95 E-value=3.3e-09 Score=92.69 Aligned_cols=87 Identities=17% Similarity=0.087 Sum_probs=69.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC--Cc
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DF 180 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~--~l 180 (209)
.|+|||.+++.++. .+..+++..++|.|||++++..+............+|||||. .|+.||.+++..+++ .+
T Consensus 43 ~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 49999999999887 456799999999999998877766655443334469999996 778999999999975 57
Q ss_pred eEEEEEcChhHHHH
Q psy14604 181 YVVTYVGDKDCRIV 194 (209)
Q Consensus 181 ~v~~y~G~~~~r~~ 194 (209)
.+..++|.......
T Consensus 119 ~~~~~~g~~~~~~~ 132 (400)
T 1s2m_A 119 SCMVTTGGTNLRDD 132 (400)
T ss_dssp CEEEECSSSCHHHH
T ss_pred eEEEEeCCcchHHH
Confidence 88888888765543
No 23
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.95 E-value=5.2e-09 Score=83.61 Aligned_cols=87 Identities=15% Similarity=0.040 Sum_probs=67.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC---CC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA---PD 179 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~---~~ 179 (209)
.|+|||.+++..+. .+..+++...+|.|||+..+..+............+|||||. .++.||.+++..+. ++
T Consensus 25 ~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 68999999998776 567899999999999988776655544333334469999996 67799999999986 36
Q ss_pred ceEEEEEcChhHHHH
Q psy14604 180 FYVVTYVGDKDCRIV 194 (209)
Q Consensus 180 l~v~~y~G~~~~r~~ 194 (209)
+.+..++|+......
T Consensus 101 ~~~~~~~g~~~~~~~ 115 (206)
T 1vec_A 101 AKVMATTGGTNLRDD 115 (206)
T ss_dssp CCEEEECSSSCHHHH
T ss_pred ceEEEEeCCccHHHH
Confidence 788888887765543
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.94 E-value=2.6e-09 Score=92.71 Aligned_cols=85 Identities=18% Similarity=0.102 Sum_probs=67.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC--C
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--D 179 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~--~ 179 (209)
..|+|||.+++.++. .+..+++..++|.|||++++..+...+.......++|||||. .|+.||.+++.+++. +
T Consensus 42 ~~~~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHH----HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 379999999999887 456799999999999998766655554443345579999996 788999999999974 5
Q ss_pred ceEEEEEcChhH
Q psy14604 180 FYVVTYVGDKDC 191 (209)
Q Consensus 180 l~v~~y~G~~~~ 191 (209)
+.+..++|....
T Consensus 118 ~~~~~~~g~~~~ 129 (394)
T 1fuu_A 118 IKVHACIGGTSF 129 (394)
T ss_dssp CCEEEECSSCCH
T ss_pred eeEEEEeCCCch
Confidence 788888887654
No 25
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.94 E-value=5.2e-09 Score=88.76 Aligned_cols=79 Identities=18% Similarity=0.152 Sum_probs=64.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC--Cc
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DF 180 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~--~l 180 (209)
.|+|||.+++.++. .+..+++..++|.|||++++..+... ...+|||||. .|+.||.+++.+|.+ ++
T Consensus 16 ~l~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 85 (337)
T 2z0m_A 16 NFTEVQSKTIPLML----QGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMDT 85 (337)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHh----cCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Confidence 58999999999887 66789999999999999877666542 3469999996 778999999999874 57
Q ss_pred eEEEEEcChhHH
Q psy14604 181 YVVTYVGDKDCR 192 (209)
Q Consensus 181 ~v~~y~G~~~~r 192 (209)
.+..++|+....
T Consensus 86 ~~~~~~~~~~~~ 97 (337)
T 2z0m_A 86 KVAEVYGGMPYK 97 (337)
T ss_dssp CEEEECTTSCHH
T ss_pred cEEEEECCcchH
Confidence 888888876543
No 26
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.94 E-value=5.1e-09 Score=84.87 Aligned_cols=85 Identities=18% Similarity=0.102 Sum_probs=63.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC--C
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--D 179 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~--~ 179 (209)
..|+|||.+++..+. .+..+|+...+|.|||+..+..+............+|||||. .++.||.+++..++. +
T Consensus 35 ~~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (224)
T 1qde_A 35 EEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 110 (224)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccC
Confidence 368999999998776 567799999999999998554444433333334579999996 778999999999874 6
Q ss_pred ceEEEEEcChhH
Q psy14604 180 FYVVTYVGDKDC 191 (209)
Q Consensus 180 l~v~~y~G~~~~ 191 (209)
+.+..++|+...
T Consensus 111 ~~~~~~~g~~~~ 122 (224)
T 1qde_A 111 IKVHACIGGTSF 122 (224)
T ss_dssp CCEEEECC----
T ss_pred ceEEEEeCCcch
Confidence 778888887653
No 27
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.92 E-value=4.3e-09 Score=92.36 Aligned_cols=86 Identities=15% Similarity=0.150 Sum_probs=68.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC--Cc
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DF 180 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~--~l 180 (209)
.|+|||.+++.++. .+..+|+...+|.|||++.+..+...+.......++|||||. .|+.||.+++.+|.. .+
T Consensus 59 ~~~~~Q~~ai~~i~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQII----KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 49999999999887 567799999999999998887766554433344579999996 678999999999873 57
Q ss_pred eEEEEEcChhHHH
Q psy14604 181 YVVTYVGDKDCRI 193 (209)
Q Consensus 181 ~v~~y~G~~~~r~ 193 (209)
.+..++|......
T Consensus 135 ~~~~~~g~~~~~~ 147 (410)
T 2j0s_A 135 QCHACIGGTNVGE 147 (410)
T ss_dssp CEEEECTTSCHHH
T ss_pred EEEEEECCCCHHH
Confidence 7788887765443
No 28
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.90 E-value=9.2e-09 Score=84.23 Aligned_cols=86 Identities=19% Similarity=0.132 Sum_probs=65.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC----CCCCcEEEEeCc-ccHHHHHHHHHHhC
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG----HCKGPFLVSAPL-STIINWEREFETWA 177 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~----~~~~~~LIV~P~-sl~~qW~~E~~~~~ 177 (209)
..|+|||.+++..+. .+..+|+...+|.|||+..+..+....... .....+|||||. .|+.||.+++..|.
T Consensus 46 ~~~~~~Q~~~i~~~~----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 46 RLVTEIQKQTIGLAL----QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CBCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 368999999998876 677899999999999998776554443221 123459999996 78899999999997
Q ss_pred C--CceEEEEEcChhHH
Q psy14604 178 P--DFYVVTYVGDKDCR 192 (209)
Q Consensus 178 ~--~l~v~~y~G~~~~r 192 (209)
. ++.+..++|+....
T Consensus 122 ~~~~~~~~~~~g~~~~~ 138 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLK 138 (236)
T ss_dssp TTSSCCEEEECCC--CH
T ss_pred CCCCeeEEEEECCCCHH
Confidence 5 47888888876543
No 29
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.90 E-value=9.5e-09 Score=85.65 Aligned_cols=84 Identities=24% Similarity=0.175 Sum_probs=66.9
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC--Cc
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DF 180 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~--~l 180 (209)
.|++||.+++..+. .+...|+...+|.|||++.+..+............+|||||. .|+.||.+++.++.. ++
T Consensus 65 ~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 65 KPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 68999999998776 667899999999999998776665544444334469999996 678999999999864 67
Q ss_pred eEEEEEcChhH
Q psy14604 181 YVVTYVGDKDC 191 (209)
Q Consensus 181 ~v~~y~G~~~~ 191 (209)
.+..++|+...
T Consensus 141 ~~~~~~g~~~~ 151 (249)
T 3ber_A 141 QSAVIVGGIDS 151 (249)
T ss_dssp CEEEECTTSCH
T ss_pred eEEEEECCCCh
Confidence 88888887544
No 30
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.89 E-value=4.7e-09 Score=85.18 Aligned_cols=87 Identities=14% Similarity=0.048 Sum_probs=66.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC---
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--- 178 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~--- 178 (209)
..|+|||.+++..+. .+..+|+...+|.|||+..+..+............+|||||. .++.||.+++.++..
T Consensus 25 ~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 100 (219)
T 1q0u_A 25 YKPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 100 (219)
T ss_dssp CSCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcc
Confidence 358999999998776 457799999999999998666555544333334469999996 778999999999864
Q ss_pred ---CceEEEEEcChhHHH
Q psy14604 179 ---DFYVVTYVGDKDCRI 193 (209)
Q Consensus 179 ---~l~v~~y~G~~~~r~ 193 (209)
.+.+..++|+.....
T Consensus 101 ~~~~~~~~~~~g~~~~~~ 118 (219)
T 1q0u_A 101 KDRMIVARCLIGGTDKQK 118 (219)
T ss_dssp GGGCCCEEEECCCSHHHH
T ss_pred cccceEEEEEeCCCCHHH
Confidence 567888888765443
No 31
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.84 E-value=1e-08 Score=87.78 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=66.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC--Cc
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DF 180 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~--~l 180 (209)
.|+|||.+++.++.. .+..+++..++|.|||++++..+....... ....+|||||. .|+.||.+++..|++ .+
T Consensus 28 ~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 103 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTRELAIQVADEIESLKGNKNL 103 (367)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCc
Confidence 689999999987762 335789999999999999887776655432 23469999996 677999999999974 57
Q ss_pred eEEEEEcChhHH
Q psy14604 181 YVVTYVGDKDCR 192 (209)
Q Consensus 181 ~v~~y~G~~~~r 192 (209)
.+..++|+....
T Consensus 104 ~v~~~~~~~~~~ 115 (367)
T 1hv8_A 104 KIAKIYGGKAIY 115 (367)
T ss_dssp CEEEECTTSCHH
T ss_pred eEEEEECCcchH
Confidence 788888776543
No 32
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.82 E-value=2.6e-08 Score=82.47 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=65.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCC---------CCCcEEEEeCc-ccHHHHHHH
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH---------CKGPFLVSAPL-STIINWERE 172 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~---------~~~~~LIV~P~-sl~~qW~~E 172 (209)
..|+|||.+++..+. .+...|+...+|.|||+..+..+........ ....+|||||. .|+.||.++
T Consensus 44 ~~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 44 QRPTPIQKNAIPAIL----EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 358999999998776 5678999999999999987766555443221 12369999996 788999999
Q ss_pred HHHhCC--CceEEEEEcChhHH
Q psy14604 173 FETWAP--DFYVVTYVGDKDCR 192 (209)
Q Consensus 173 ~~~~~~--~l~v~~y~G~~~~r 192 (209)
+.+|.. .+.+..++|+....
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~ 141 (253)
T 1wrb_A 120 SQKFSLNTPLRSCVVYGGADTH 141 (253)
T ss_dssp HHHHHTTSSCCEEEECSSSCSH
T ss_pred HHHHhccCCceEEEEECCCCHH
Confidence 999864 57778888776544
No 33
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.81 E-value=1.9e-08 Score=86.90 Aligned_cols=85 Identities=13% Similarity=0.037 Sum_probs=64.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC--CC
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA--PD 179 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~--~~ 179 (209)
..|+|||.+++..+... .+..+|+..++|.|||++++..+............+|||||. .|+.||.+++..+. ..
T Consensus 26 ~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 103 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTK 103 (395)
T ss_dssp CSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccC
Confidence 46899999999887621 236799999999999999887776665544445579999996 57899999999986 35
Q ss_pred ceEEEEEcCh
Q psy14604 180 FYVVTYVGDK 189 (209)
Q Consensus 180 l~v~~y~G~~ 189 (209)
+.+..++|..
T Consensus 104 ~~~~~~~~~~ 113 (395)
T 3pey_A 104 ITSQLIVPDS 113 (395)
T ss_dssp CCEEEESTTS
T ss_pred eeEEEEecCc
Confidence 5566555543
No 34
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.81 E-value=1.8e-08 Score=88.14 Aligned_cols=88 Identities=17% Similarity=0.077 Sum_probs=68.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC--CC
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA--PD 179 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~--~~ 179 (209)
..|++||.+++..+. .+..+|+..++|.|||++++..+...+........+|||||. .|+.||.+++..|. ..
T Consensus 61 ~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 61 EKPSAIQQRAILPCI----KGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHhHHHh----CCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 368999999998776 567799999999999999877776665444345579999996 67899999999986 45
Q ss_pred ceEEEEEcChhHHHH
Q psy14604 180 FYVVTYVGDKDCRIV 194 (209)
Q Consensus 180 l~v~~y~G~~~~r~~ 194 (209)
+.+..++|.......
T Consensus 137 ~~~~~~~~~~~~~~~ 151 (414)
T 3eiq_A 137 ASCHACIGGTNVRAE 151 (414)
T ss_dssp CCEEECCCCTTHHHH
T ss_pred ceEEEEECCcchHHH
Confidence 677777776655443
No 35
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.80 E-value=1.7e-08 Score=83.11 Aligned_cols=85 Identities=18% Similarity=0.120 Sum_probs=62.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC--Cc
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP--DF 180 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~--~l 180 (209)
.|++||.+++..+. .+...|+...+|.|||+..+..+............+|||||. .++.||.+++..|.. .+
T Consensus 52 ~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 48999999998776 567799999999999998666555544333234469999996 788999999999974 56
Q ss_pred eEEEEEcChhHH
Q psy14604 181 YVVTYVGDKDCR 192 (209)
Q Consensus 181 ~v~~y~G~~~~r 192 (209)
.+..++|+....
T Consensus 128 ~~~~~~g~~~~~ 139 (237)
T 3bor_A 128 TCHACIGGTNVR 139 (237)
T ss_dssp CEEEECC-----
T ss_pred eEEEEECCCchH
Confidence 777777765443
No 36
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.66 E-value=1.4e-07 Score=76.76 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=61.9
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC------CCCCcEEEEeCc-ccHHHHHHHHHHh
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG------HCKGPFLVSAPL-STIINWEREFETW 176 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~------~~~~~~LIV~P~-sl~~qW~~E~~~~ 176 (209)
.|+|||.+++..+. .+...|+...+|.|||+..+..+....... .....+|||||. .|+.||.+++..+
T Consensus 42 ~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 79999999998776 677899999999999998766544433211 133458999996 5779999999998
Q ss_pred C-CCceEEEEEcChhHH
Q psy14604 177 A-PDFYVVTYVGDKDCR 192 (209)
Q Consensus 177 ~-~~l~v~~y~G~~~~r 192 (209)
. ..+.+..++|+....
T Consensus 118 ~~~~~~~~~~~~~~~~~ 134 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRN 134 (228)
T ss_dssp CCTTCCEEEECC-----
T ss_pred cccCceEEEEECCCChH
Confidence 5 578888888776544
No 37
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.62 E-value=1.1e-07 Score=83.86 Aligned_cols=83 Identities=14% Similarity=0.096 Sum_probs=65.7
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC-C
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAP-D 179 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~-~ 179 (209)
+..|+|||.+++..+. .+...|+...+|.|||+..+..+.... .....+|||||. .|+.||.+++..|++ +
T Consensus 19 ~~~~~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 91 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 91 (414)
T ss_dssp SSCCCHHHHHHHHHHT----TTCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCC
Confidence 4578999999998765 566899999999999995554444333 223469999996 778999999999985 7
Q ss_pred ceEEEEEcChhH
Q psy14604 180 FYVVTYVGDKDC 191 (209)
Q Consensus 180 l~v~~y~G~~~~ 191 (209)
+++..++|+...
T Consensus 92 ~~v~~~~g~~~~ 103 (414)
T 3oiy_A 92 VKIFGFYSSMKK 103 (414)
T ss_dssp CCEEECCTTSCH
T ss_pred ceEEEEECCCCh
Confidence 899999998755
No 38
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.59 E-value=3e-07 Score=80.42 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=65.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHH-HHhhCC-----------------CCCcEEEEeCc-
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYS-LFKEGH-----------------CKGPFLVSAPL- 163 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~-~~~~~~-----------------~~~~~LIV~P~- 163 (209)
..|+|+|.+++..+. .+...|+...+|.|||+..+..+.. +..... ....+|||||.
T Consensus 36 ~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIK----EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHHc----cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 378999999998765 6778999999999999976654433 332211 11358999996
Q ss_pred ccHHHHHHHHHHhC--CCceEEEEEcChhHHHH
Q psy14604 164 STIINWEREFETWA--PDFYVVTYVGDKDCRIV 194 (209)
Q Consensus 164 sl~~qW~~E~~~~~--~~l~v~~y~G~~~~r~~ 194 (209)
.|+.||.+++.+|. ..+.+..++|+......
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 144 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQ 144 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHH
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHH
Confidence 78899999999986 46788888887655433
No 39
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.59 E-value=1.4e-07 Score=77.49 Aligned_cols=82 Identities=15% Similarity=0.124 Sum_probs=60.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh-CCCCCcEEEEeCc-ccHHHHHHHHHHhCC--C
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-GHCKGPFLVSAPL-STIINWEREFETWAP--D 179 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~-~~~~~~~LIV~P~-sl~~qW~~E~~~~~~--~ 179 (209)
.|+|||.+++..+. .+...|+...+|.|||+..+..+...... ......+|||||. .|+.||.+++..++. .
T Consensus 51 ~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVML----HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 49999999998766 56779999999999999866555444332 2223359999996 678999999999874 4
Q ss_pred ceEEEEEcCh
Q psy14604 180 FYVVTYVGDK 189 (209)
Q Consensus 180 l~v~~y~G~~ 189 (209)
+.+..++|..
T Consensus 127 ~~~~~~~~~~ 136 (245)
T 3dkp_A 127 FRIHMIHKAA 136 (245)
T ss_dssp CCEECCCHHH
T ss_pred ceEEEEecCc
Confidence 5565555543
No 40
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.58 E-value=2.3e-07 Score=80.85 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=63.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC---C
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA---P 178 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~---~ 178 (209)
..|+|||.+++..+.. ..+...|+...+|.|||++++..+............+|||||. .|+.||.+.+..+. +
T Consensus 46 ~~~~~~Q~~~i~~~~~--~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHS--SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhc--CCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 3689999999987762 1236789999999999999877666555444444469999996 57788988888775 5
Q ss_pred CceEEEEEcCh
Q psy14604 179 DFYVVTYVGDK 189 (209)
Q Consensus 179 ~l~v~~y~G~~ 189 (209)
.+.+....|..
T Consensus 124 ~~~~~~~~~~~ 134 (412)
T 3fht_A 124 ELKLAYAVRGN 134 (412)
T ss_dssp TCCEEEECTTC
T ss_pred cceEEEeecCc
Confidence 67777666654
No 41
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.56 E-value=2.8e-07 Score=82.54 Aligned_cols=85 Identities=18% Similarity=0.136 Sum_probs=65.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCC-----CCCcEEEEeCc-ccHHHHHHHHHHhC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH-----CKGPFLVSAPL-STIINWEREFETWA 177 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~-----~~~~~LIV~P~-sl~~qW~~E~~~~~ 177 (209)
.+.|+|.+++..+. .+...|+...+|.|||+..+..+........ ....+|||||. .|+.||.+++.+|+
T Consensus 78 ~pt~iQ~~ai~~i~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVIS----SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh----cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 48999999998876 6778999999999999987665544433221 13469999996 68899999999997
Q ss_pred C--CceEEEEEcChhHH
Q psy14604 178 P--DFYVVTYVGDKDCR 192 (209)
Q Consensus 178 ~--~l~v~~y~G~~~~r 192 (209)
. .+++.+++|+....
T Consensus 154 ~~~~~~~~~~~gg~~~~ 170 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFR 170 (434)
T ss_dssp TTSSCCCCEECTTSCHH
T ss_pred ccCCcEEEEEECCCCHH
Confidence 3 56777777776544
No 42
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.54 E-value=1.1e-07 Score=94.49 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=59.0
Q ss_pred CCCchHHHHHHHHHHHhhc----------CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccHHHHHH
Q psy14604 103 MQLHAYQLEGINWLRYSWG----------QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWER 171 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~----------~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~~qW~~ 171 (209)
..|+|||..|+..+...+. .+.+|++.+.+|.|||++++.++ .++.......++||||| ..|+.||.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 4699999999999876432 13579999999999999986665 44333222347999999 688899999
Q ss_pred HHHHhCCC
Q psy14604 172 EFETWAPD 179 (209)
Q Consensus 172 E~~~~~~~ 179 (209)
+|..|.+.
T Consensus 349 ~f~~f~~~ 356 (1038)
T 2w00_A 349 EYQRFSPD 356 (1038)
T ss_dssp HHHTTSTT
T ss_pred HHHHhccc
Confidence 99999753
No 43
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.51 E-value=4.6e-07 Score=89.76 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=64.7
Q ss_pred cccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC
Q psy14604 99 DDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA 177 (209)
Q Consensus 99 ~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~ 177 (209)
....+.|+|||.+++..+. .+...|++.++|.|||+.+...+...+.. ...+||++|. .|+.||.++|..++
T Consensus 81 ~~~~f~L~~~Q~eai~~l~----~g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 81 RTYPFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp CCCSSCCCHHHHHHHHHHH----HTCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHh
Confidence 3455789999999998876 56779999999999999876655554433 2469999996 78899999999987
Q ss_pred CCceEEEEEcCh
Q psy14604 178 PDFYVVTYVGDK 189 (209)
Q Consensus 178 ~~l~v~~y~G~~ 189 (209)
+ .|.+++|+.
T Consensus 154 ~--~vglltGd~ 163 (1010)
T 2xgj_A 154 G--DVGLMTGDI 163 (1010)
T ss_dssp S--CEEEECSSC
T ss_pred C--CEEEEeCCC
Confidence 6 566677654
No 44
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.51 E-value=6.3e-07 Score=73.73 Aligned_cols=85 Identities=15% Similarity=0.069 Sum_probs=64.0
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC-----CCCCcEEEEeCc-ccHHHHHHHHHHhC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG-----HCKGPFLVSAPL-STIINWEREFETWA 177 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~-----~~~~~~LIV~P~-sl~~qW~~E~~~~~ 177 (209)
.++|||.+++..+. .+...|+...+|.|||+..+..+....... .....+|||||. .|+.||.+++..+.
T Consensus 51 ~~~~~Q~~~i~~~~----~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVAL----SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHHH----HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 48999999998766 567799999999999998666554443321 123458999995 67789999999885
Q ss_pred --CCceEEEEEcChhHH
Q psy14604 178 --PDFYVVTYVGDKDCR 192 (209)
Q Consensus 178 --~~l~v~~y~G~~~~r 192 (209)
..+.+..++|+....
T Consensus 127 ~~~~~~~~~~~g~~~~~ 143 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKG 143 (242)
T ss_dssp HHTTCCEEEECTTSCHH
T ss_pred hhcCceEEEEECCCChH
Confidence 467888888776443
No 45
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.49 E-value=4.7e-07 Score=90.76 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=66.8
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCC--ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHHHHHHHHHhC
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETWA 177 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~--g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~qW~~E~~~~~ 177 (209)
+++.++|||.+++..+...+..+. .+|++.++|.|||++++..+...... ...+|||||.. |+.||.++|..++
T Consensus 600 f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt~~La~Q~~~~~~~~~ 676 (1151)
T 2eyq_A 600 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPTTLLAQQHYDNFRDRF 676 (1151)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEechHHHHHHHHHHHHHHh
Confidence 567889999999998876665555 78999999999999887655444333 24699999975 6788999999987
Q ss_pred CC--ceEEEEEcC
Q psy14604 178 PD--FYVVTYVGD 188 (209)
Q Consensus 178 ~~--l~v~~y~G~ 188 (209)
++ +++.+++|.
T Consensus 677 ~~~~i~v~~l~~~ 689 (1151)
T 2eyq_A 677 ANWPVRIEMISRF 689 (1151)
T ss_dssp TTTTCCEEEESTT
T ss_pred hcCCCeEEEEeCC
Confidence 54 677777764
No 46
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.41 E-value=8.6e-07 Score=85.64 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=71.3
Q ss_pred cCCCCchHHHHHHHHHHHhhcCC--CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA 177 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~--~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~ 177 (209)
+++.|.++|.+++..+...+..+ ...|+..++|.|||+.++..+......+ ..+||+||. .|+.||.++|..|+
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~Q~~~~l~~~~ 441 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAIQHYRRTVESF 441 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHh
Confidence 45689999999999887655444 3689999999999999888776665543 459999997 67789999999998
Q ss_pred C--CceEEEEEcChhHH
Q psy14604 178 P--DFYVVTYVGDKDCR 192 (209)
Q Consensus 178 ~--~l~v~~y~G~~~~r 192 (209)
+ +++|.+++|+....
T Consensus 442 ~~~gi~v~~l~G~~~~~ 458 (780)
T 1gm5_A 442 SKFNIHVALLIGATTPS 458 (780)
T ss_dssp TCSSCCEEECCSSSCHH
T ss_pred hhcCceEEEEeCCCCHH
Confidence 5 68899999986543
No 47
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.39 E-value=1.6e-06 Score=72.57 Aligned_cols=85 Identities=15% Similarity=0.097 Sum_probs=62.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC----CCCCcEEEEeCc-ccHHHHHHHHHHhCC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG----HCKGPFLVSAPL-STIINWEREFETWAP 178 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~----~~~~~~LIV~P~-sl~~qW~~E~~~~~~ 178 (209)
.|+|+|.+++..+. .+...|+...+|.|||+.++..+....... .....+|||||. .|+.||.+++.+++.
T Consensus 76 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLL----EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHH----HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 48999999997665 346689999999999998666554443321 123459999996 778999999999874
Q ss_pred --CceEEEEEcChhHH
Q psy14604 179 --DFYVVTYVGDKDCR 192 (209)
Q Consensus 179 --~l~v~~y~G~~~~r 192 (209)
...+..+.|+....
T Consensus 152 ~~~~~~~~~~g~~~~~ 167 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRS 167 (262)
T ss_dssp TCCSCEEEECSSSCHH
T ss_pred hcCceEEEEECCCCHH
Confidence 46677777765443
No 48
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.36 E-value=3e-07 Score=84.06 Aligned_cols=74 Identities=15% Similarity=0.014 Sum_probs=58.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPD 179 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~ 179 (209)
.|++||.+++..+... .+...|+...+|.|||++++..+...+........+|||||. .|+.||.++|..++..
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~ 215 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY 215 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCc
Confidence 4899999999876521 136789999999999999777766665554445579999996 5889999999999743
No 49
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.4e-06 Score=86.99 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=63.4
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCC
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPD 179 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~ 179 (209)
..+.|.|||.+++..+. .+...|++.++|.|||++++..+...... ...+||++|. .|+.||.++|..++.
T Consensus 181 ~~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~PtraLa~Q~~~~l~~~~~- 252 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG- 252 (1108)
T ss_dssp CSSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHTS-
T ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcHHHHHHHHHHHHHHhC-
Confidence 44679999999998764 67789999999999999887766655543 3469999996 677889999999886
Q ss_pred ceEEEEEcCh
Q psy14604 180 FYVVTYVGDK 189 (209)
Q Consensus 180 l~v~~y~G~~ 189 (209)
.|.+++|+.
T Consensus 253 -~VglltGd~ 261 (1108)
T 3l9o_A 253 -DVGLMTGDI 261 (1108)
T ss_dssp -SEEEECSSC
T ss_pred -CccEEeCcc
Confidence 566666654
No 50
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.32 E-value=2.5e-06 Score=84.33 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=66.6
Q ss_pred CccccCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC-cccHHHHHHHHHH
Q psy14604 97 FLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP-LSTIINWEREFET 175 (209)
Q Consensus 97 ~~~~~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P-~sl~~qW~~E~~~ 175 (209)
+.....+.|.|+|.+++..+. .+...|+...+|.|||+.++..+..+... ...+|||+| .+|+.||.++|..
T Consensus 32 ~~~~~~f~l~~~Q~~aI~~il----~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 32 PARSWPFELDTFQKEAVYHLE----QGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp CSCCCSSCCCHHHHHHHHHHH----TTCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHT
T ss_pred HHHhCCCCCCHHHHHHHHHHH----cCCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHH
Confidence 334456789999999998765 67789999999999998765555444433 245999999 4688999999999
Q ss_pred hCCCceEEEEEcCh
Q psy14604 176 WAPDFYVVTYVGDK 189 (209)
Q Consensus 176 ~~~~l~v~~y~G~~ 189 (209)
+++++.+..++|+.
T Consensus 105 ~~~~~~v~~l~G~~ 118 (997)
T 4a4z_A 105 TFDDVNIGLITGDV 118 (997)
T ss_dssp TC--CCEEEECSSC
T ss_pred HcCCCeEEEEeCCC
Confidence 98888999988875
No 51
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.31 E-value=2.7e-06 Score=78.70 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=63.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCC----CCCcEEEEeCc-ccHHHHHHHHHHhC-
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH----CKGPFLVSAPL-STIINWEREFETWA- 177 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~----~~~~~LIV~P~-sl~~qW~~E~~~~~- 177 (209)
.|+|||.+++..+.. ..+...|+...+|.|||+..+..+........ ....+|||||. .|+.||.+++..++
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 499999999976651 13456888999999999986666555443332 12358999995 77899999999874
Q ss_pred -----CCceEEEEEcChhHHH
Q psy14604 178 -----PDFYVVTYVGDKDCRI 193 (209)
Q Consensus 178 -----~~l~v~~y~G~~~~r~ 193 (209)
+.+.+..+.|......
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~ 141 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRA 141 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHH
T ss_pred hcccccceEEEEEECCccHHH
Confidence 4566777777655443
No 52
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.23 E-value=2.1e-06 Score=77.23 Aligned_cols=85 Identities=14% Similarity=0.118 Sum_probs=59.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHh---CC
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETW---AP 178 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~---~~ 178 (209)
..|+|+|.+++..+.. ..+...|+...+|.|||+..+..+...+........+|||||. .|+.||.+.+..+ .+
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 4589999999987752 1236789999999999998665555444433333469999996 5678887777665 45
Q ss_pred CceEEEEEcCh
Q psy14604 179 DFYVVTYVGDK 189 (209)
Q Consensus 179 ~l~v~~y~G~~ 189 (209)
.+.+.++.|..
T Consensus 191 ~~~~~~~~~~~ 201 (479)
T 3fmp_B 191 ELKLAYAVRGN 201 (479)
T ss_dssp TCCEEEESTTC
T ss_pred CceEEEEeCCc
Confidence 67776665543
No 53
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.19 E-value=8e-06 Score=74.80 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=62.5
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCC----CCCcEEEEeCc-ccHHHHHHHHHHhC-
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH----CKGPFLVSAPL-STIINWEREFETWA- 177 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~----~~~~~LIV~P~-sl~~qW~~E~~~~~- 177 (209)
.|+|||.+++..+.. ..+...|+...+|.|||+..+..+........ ....+|||||. .|+.||.+++.+++
T Consensus 94 ~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp SCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 499999999976651 13456888999999999987666555444332 12359999995 77899999999863
Q ss_pred -----CCceEEEEEcChhHH
Q psy14604 178 -----PDFYVVTYVGDKDCR 192 (209)
Q Consensus 178 -----~~l~v~~y~G~~~~r 192 (209)
+.+.+..+.|.....
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~ 191 (563)
T 3i5x_A 172 MNYGLKKYACVSLVGGTDFR 191 (563)
T ss_dssp HCGGGTTSCEEEECTTSCHH
T ss_pred hccccCceeEEEEECCcCHH
Confidence 345677777765443
No 54
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.09 E-value=4.5e-06 Score=79.04 Aligned_cols=80 Identities=20% Similarity=0.214 Sum_probs=64.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHHHHHHHHHhCC-Cce
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETWAP-DFY 181 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~qW~~E~~~~~~-~l~ 181 (209)
.|+|+|.+++..+. .+...|++.++|.|||+++..++...... .+.+|||+|.. ++.||.+++.+|.+ +++
T Consensus 25 ~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 68999999998754 57789999999999999986666554433 34699999975 88899999977764 678
Q ss_pred EEEEEcChh
Q psy14604 182 VVTYVGDKD 190 (209)
Q Consensus 182 v~~y~G~~~ 190 (209)
|..++|+..
T Consensus 98 v~~~~G~~~ 106 (702)
T 2p6r_A 98 IGISTGDYE 106 (702)
T ss_dssp EEEECSSCB
T ss_pred EEEEeCCCC
Confidence 888888753
No 55
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.08 E-value=1.5e-05 Score=68.14 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=60.1
Q ss_pred CCCchHHHHHHHHHHHhhcCC--CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC--
Q psy14604 103 MQLHAYQLEGINWLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA-- 177 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~--~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~-- 177 (209)
..+.++|.+++..+. .+ ...|+...+|.|||+..+..++...........+|||||. .|+.|+.+.+..+.
T Consensus 113 ~~pt~iQ~~ai~~il----~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~ 188 (300)
T 3fmo_B 113 NRPSKIQENALPLML----AEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF 188 (300)
T ss_dssp CSCCHHHHHHHHHHT----SSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHH----cCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 458899999997664 33 6788899999999997654444333332223359999995 67788988888875
Q ss_pred -CCceEEEEEcChh
Q psy14604 178 -PDFYVVTYVGDKD 190 (209)
Q Consensus 178 -~~l~v~~y~G~~~ 190 (209)
+.+.+..+.|...
T Consensus 189 ~~~~~~~~~~~~~~ 202 (300)
T 3fmo_B 189 YPELKLAYAVRGNK 202 (300)
T ss_dssp STTCCEEEESTTCC
T ss_pred CCCcEEEEEeCCcc
Confidence 5678887777553
No 56
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.97 E-value=8.3e-06 Score=77.39 Aligned_cols=81 Identities=19% Similarity=0.237 Sum_probs=62.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHH-HHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCC-Cc
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLY-SLFKEGHCKGPFLVSAPL-STIINWEREFETWAP-DF 180 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~-~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~-~l 180 (209)
.|+|||.+++..+ ...+...|++.++|.|||+++...+. .+... .+.+|||+|. .++.||.+++.+|.+ ++
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raLa~q~~~~~~~l~~~g~ 96 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKALAEEKFQEFQDWEKIGL 96 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGGHHHHHHHTGGGGGGTC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHHHHHHHHHHHHHHhcCC
Confidence 6999999998751 22467799999999999999854444 33323 2469999995 788899999987754 68
Q ss_pred eEEEEEcChh
Q psy14604 181 YVVTYVGDKD 190 (209)
Q Consensus 181 ~v~~y~G~~~ 190 (209)
+|..++|+..
T Consensus 97 ~v~~~~G~~~ 106 (720)
T 2zj8_A 97 RVAMATGDYD 106 (720)
T ss_dssp CEEEECSCSS
T ss_pred EEEEecCCCC
Confidence 8999988643
No 57
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.95 E-value=1.6e-05 Score=75.32 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=62.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHHHHHHHHHhCC-Cce
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETWAP-DFY 181 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~qW~~E~~~~~~-~l~ 181 (209)
.|+|+|.+++..+ ...+...|++.++|.|||+++..++....... .+.+||++|.. ++.||.+++.+|.+ +++
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 7999999999652 23577899999999999999966665443322 34699999976 78899999976653 678
Q ss_pred EEEEEcCh
Q psy14604 182 VVTYVGDK 189 (209)
Q Consensus 182 v~~y~G~~ 189 (209)
|..++|+.
T Consensus 105 v~~~~G~~ 112 (715)
T 2va8_A 105 VAMTSGDY 112 (715)
T ss_dssp EEECCSCS
T ss_pred EEEEeCCC
Confidence 88888864
No 58
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.94 E-value=1.7e-05 Score=74.19 Aligned_cols=75 Identities=21% Similarity=0.159 Sum_probs=58.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCce
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFY 181 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l~ 181 (209)
..++|+|.+++..+. .+..+|+...+|.|||+..+..+ +.. .+.+|||+|. +|+.||.+.|..+ .+.
T Consensus 43 ~~~rp~Q~~~i~~il----~g~d~lv~~pTGsGKTl~~~lpa--l~~----~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 43 EKFRPLQLETINVTM----AGKEVFLVMPTGGGKSLCYQLPA--LCS----DGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp CSCCTTHHHHHHHHH----TTCCEEEECCTTSCTTHHHHHHH--HTS----SSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEECCCChHHHHHHHHH--HHc----CCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 368999999998876 57779999999999998544332 221 3469999995 7888999999998 566
Q ss_pred EEEEEcCh
Q psy14604 182 VVTYVGDK 189 (209)
Q Consensus 182 v~~y~G~~ 189 (209)
+..++|+.
T Consensus 111 ~~~l~~~~ 118 (591)
T 2v1x_A 111 ATMLNASS 118 (591)
T ss_dssp EEECCSSC
T ss_pred EEEEeCCC
Confidence 77777664
No 59
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.93 E-value=1.7e-05 Score=72.89 Aligned_cols=75 Identities=19% Similarity=0.147 Sum_probs=58.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCceE
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYV 182 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l~v 182 (209)
.++|+|.+++..+. .+..+++...+|.|||+..+..+ +.. .+.+|||+|. +|+.||.+++..+ .+.+
T Consensus 25 ~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~--l~~----~g~~lvi~P~~aL~~q~~~~l~~~--gi~~ 92 (523)
T 1oyw_A 25 QFRPGQEEIIDTVL----SGRDCLVVMPTGGGKSLCYQIPA--LLL----NGLTVVVSPLISLMKDQVDQLQAN--GVAA 92 (523)
T ss_dssp SCCTTHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHH--HHS----SSEEEEECSCHHHHHHHHHHHHHT--TCCE
T ss_pred CCCHHHHHHHHHHH----cCCCEEEECCCCcHHHHHHHHHH--HHh----CCCEEEECChHHHHHHHHHHHHHc--CCcE
Confidence 68999999998876 66789999999999998544322 222 2469999996 7788899999987 4677
Q ss_pred EEEEcChh
Q psy14604 183 VTYVGDKD 190 (209)
Q Consensus 183 ~~y~G~~~ 190 (209)
..++|+..
T Consensus 93 ~~l~~~~~ 100 (523)
T 1oyw_A 93 ACLNSTQT 100 (523)
T ss_dssp EEECTTSC
T ss_pred EEEeCCCC
Confidence 77777654
No 60
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.92 E-value=2.7e-05 Score=71.91 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=62.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC--CC
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA--PD 179 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~--~~ 179 (209)
+.+||||.+.+.-+...+..+..+++-..+|.|||+..+..+.. ...++||++|. .++.||.+|+..+. ..
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 57899999988866666667888899999999999977655443 13479999995 67788999999874 36
Q ss_pred ceEEEEEcCh
Q psy14604 180 FYVVTYVGDK 189 (209)
Q Consensus 180 l~v~~y~G~~ 189 (209)
++++++.|..
T Consensus 76 ~~~~~l~gr~ 85 (551)
T 3crv_A 76 ITFSFLVGKP 85 (551)
T ss_dssp CCEEECCCHH
T ss_pred ccEEEEcccc
Confidence 7788776643
No 61
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.84 E-value=5.8e-05 Score=75.41 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=65.4
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC-C
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA-P 178 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~-~ 178 (209)
.++.|.|+|.+++.-+. .+...|+...+|.|||+..+..+..... ....+|||||. .|+.|+.++|..|. .
T Consensus 75 ~gf~pt~iQ~~ai~~il----~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~~~Lil~PtreLa~Q~~~~l~~l~~~ 147 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQKLADE 147 (1104)
T ss_dssp SSSCCCHHHHHHHHHHT----TTCCEEECCSTTCCHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHHTTSCT
T ss_pred cCCCCCHHHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCCeEEEEechHHHHHHHHHHHHHhhCC
Confidence 34679999999997665 5678999999999999965555444432 23459999995 67789999999976 4
Q ss_pred CceEEEEEcChhH
Q psy14604 179 DFYVVTYVGDKDC 191 (209)
Q Consensus 179 ~l~v~~y~G~~~~ 191 (209)
++++..++|+...
T Consensus 148 ~i~v~~l~Gg~~~ 160 (1104)
T 4ddu_A 148 KVKIFGFYSSMKK 160 (1104)
T ss_dssp TSCEEEECTTCCT
T ss_pred CCeEEEEeCCCCH
Confidence 6799999998754
No 62
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.72 E-value=8.4e-05 Score=68.56 Aligned_cols=78 Identities=18% Similarity=0.153 Sum_probs=54.5
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCc
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDF 180 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l 180 (209)
++.++|+|.+.+.-+...+..+..+|+-..+|.|||+..+..+.. . ..++||++|. +++.||.+++.++ .+
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~---~---~~~~~~~~~t~~l~~q~~~~~~~l--~~ 76 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ---L---KKKVLIFTRTHSQLDSIYKNAKLL--GL 76 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH---H---TCEEEEEESCHHHHHHHHHHHGGG--TC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh---C---CCcEEEEcCCHHHHHHHHHHHHhc--CC
Confidence 357899999988766666667788999999999999865544322 2 3579999995 6778899999885 45
Q ss_pred eEEEEEc
Q psy14604 181 YVVTYVG 187 (209)
Q Consensus 181 ~v~~y~G 187 (209)
++.+..|
T Consensus 77 ~~~~l~g 83 (540)
T 2vl7_A 77 KTGFLIG 83 (540)
T ss_dssp CEEEC--
T ss_pred cEEEecC
Confidence 5555554
No 63
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.57 E-value=0.00016 Score=71.88 Aligned_cols=83 Identities=17% Similarity=0.099 Sum_probs=62.6
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCC
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPD 179 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~ 179 (209)
+++.+ |+|.+++.-+. .+...|+...+|.|||+.++.++..+... ...+|||||. .|+.|+.++|..++..
T Consensus 54 ~g~~p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl~~lp~l~~~~~~---~~~~lil~PtreLa~Q~~~~l~~l~~~ 125 (1054)
T 1gku_B 54 VGEPR-AIQKMWAKRIL----RKESFAATAPTGVGKTSFGLAMSLFLALK---GKRCYVIFPTSLLVIQAAETIRKYAEK 125 (1054)
T ss_dssp TCSCC-HHHHHHHHHHH----TTCCEECCCCBTSCSHHHHHHHHHHHHTT---SCCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred cCCCH-HHHHHHHHHHH----hCCCEEEEcCCCCCHHHHHHHHHHHHhhc---CCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 44557 99999998665 66789999999999998444444444332 3469999995 6778899999998753
Q ss_pred --c----eEEEEEcChhH
Q psy14604 180 --F----YVVTYVGDKDC 191 (209)
Q Consensus 180 --l----~v~~y~G~~~~ 191 (209)
+ .+..++|+...
T Consensus 126 ~~i~~~~~v~~~~Gg~~~ 143 (1054)
T 1gku_B 126 AGVGTENLIGYYHGRIPK 143 (1054)
T ss_dssp TCCSGGGSEEECCSSCCS
T ss_pred cCCCccceEEEEeCCCCh
Confidence 4 78888887644
No 64
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.49 E-value=0.0002 Score=67.38 Aligned_cols=85 Identities=22% Similarity=0.235 Sum_probs=63.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhC--CC
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWA--PD 179 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~--~~ 179 (209)
+.+||+|.+.+.-+...+..+..+|+...+|.|||+..|..+....... ..+++|++|. +++.|+.+|+.++. ..
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 4579999999887777777788899999999999998877654443321 2468999995 56788999998875 37
Q ss_pred ceEEEEEcCh
Q psy14604 180 FYVVTYVGDK 189 (209)
Q Consensus 180 l~v~~y~G~~ 189 (209)
++++++.|..
T Consensus 80 ~~~~~l~gr~ 89 (620)
T 4a15_A 80 IRAIPMQGRV 89 (620)
T ss_dssp CCEEECCCHH
T ss_pred eEEEEEECCC
Confidence 8888877654
No 65
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.25 E-value=0.0012 Score=62.52 Aligned_cols=78 Identities=23% Similarity=0.215 Sum_probs=59.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCc-eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCc
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNID-TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDF 180 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g-~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l 180 (209)
+.+.+.|..++.-+......+.. .+|.--+|.|||+.+.+++..+ .+|+|||||. .++.||.+||..|+|+-
T Consensus 7 ~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~------~~~~lvv~~~~~~A~ql~~el~~~~~~~ 80 (664)
T 1c4o_A 7 PSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL------GRPALVLAPNKILAAQLAAEFRELFPEN 80 (664)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEEESSHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh------CCCEEEEecCHHHHHHHHHHHHHHCCCC
Confidence 46788999998866655555543 4566779999999988777544 3579999994 67789999999999876
Q ss_pred eEEEEE
Q psy14604 181 YVVTYV 186 (209)
Q Consensus 181 ~v~~y~ 186 (209)
.|..|.
T Consensus 81 ~V~~fp 86 (664)
T 1c4o_A 81 AVEYFI 86 (664)
T ss_dssp EEEECC
T ss_pred eEEEcC
Confidence 665554
No 66
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=97.08 E-value=0.0025 Score=60.24 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=60.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCc-eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCc
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNID-TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDF 180 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g-~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l 180 (209)
+.+..+|..++.-|......+.. .+|.--+|.|||+.+.+++..+ .+|+|||||. .++.||..||..|+|+-
T Consensus 11 ~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~------~~~~lvv~~~~~~A~~l~~el~~~~~~~ 84 (661)
T 2d7d_A 11 YQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV------NKPTLVIAHNKTLAGQLYSEFKEFFPNN 84 (661)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------CCCEEEECSSHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 56788999999866665555543 4566779999999988776543 3589999994 66788999999999876
Q ss_pred eEEEEE
Q psy14604 181 YVVTYV 186 (209)
Q Consensus 181 ~v~~y~ 186 (209)
.|..|-
T Consensus 85 ~v~~fp 90 (661)
T 2d7d_A 85 AVEYFV 90 (661)
T ss_dssp EEEEEC
T ss_pred cEEEcc
Confidence 666654
No 67
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=96.52 E-value=0.012 Score=57.15 Aligned_cols=80 Identities=19% Similarity=0.032 Sum_probs=55.7
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHH---HHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIIN---WEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~q---W~~E~~~~ 176 (209)
+++.++|-|..|+--|+ .+. |.-..+|-|||+..+..++.... ....++||||. .|..| |...|.+|
T Consensus 80 lG~~pt~VQ~~~ip~ll----~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 80 TGMFPFKVQLMGGVALH----DGN--IAEMKTGEGKTLTSTLPVYLNAL---TGKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HSCCCCHHHHHHHHHHH----TTS--EEECCTTSCHHHHHHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHhhHHHh----CCC--EEEccCCcHHHHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 45677888988876554 443 88889999999976544432111 23359999995 44443 88888888
Q ss_pred CCCceEEEEEcChh
Q psy14604 177 APDFYVVTYVGDKD 190 (209)
Q Consensus 177 ~~~l~v~~y~G~~~ 190 (209)
+ .++|.+++|+..
T Consensus 151 l-gl~v~~i~gg~~ 163 (844)
T 1tf5_A 151 L-GLTVGLNLNSMS 163 (844)
T ss_dssp T-TCCEEECCTTSC
T ss_pred c-CCeEEEEeCCCC
Confidence 7 788888777644
No 68
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=96.38 E-value=0.012 Score=57.48 Aligned_cols=80 Identities=13% Similarity=0.087 Sum_probs=55.5
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccH---HHHHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STI---INWEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~---~qW~~E~~~~ 176 (209)
++..++|-|..|+--|+ . |.|.-..+|-|||+.++..++..... ...++||||. .|. .+|...|.+|
T Consensus 108 lG~rP~~VQ~~~ip~Ll----~--G~Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 108 LDQRPFDVQVMGAAALH----L--GNVAEMKTGEGKTLTCVLPAYLNALA---GNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HSCCCCHHHHHHHHHHH----T--TEEEECCTTSCHHHHTHHHHHHHHTT---TSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHhHh----c--CCEEEecCCCccHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 55677888888875554 3 34888899999999755443221112 2359999995 454 3488888888
Q ss_pred CCCceEEEEEcChh
Q psy14604 177 APDFYVVTYVGDKD 190 (209)
Q Consensus 177 ~~~l~v~~y~G~~~ 190 (209)
+ .++|.+++|+..
T Consensus 179 l-GLsv~~i~gg~~ 191 (922)
T 1nkt_A 179 L-GLQVGVILATMT 191 (922)
T ss_dssp T-TCCEEECCTTCC
T ss_pred c-CCeEEEEeCCCC
Confidence 8 789988777643
No 69
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=96.37 E-value=0.013 Score=56.99 Aligned_cols=80 Identities=19% Similarity=0.055 Sum_probs=55.1
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHH---HHHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TII---NWEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~---qW~~E~~~~ 176 (209)
++..++|-|..|+--|. .+ -|.-..+|.|||+..+..++..... ...+|||||.. |.. +|...|.+|
T Consensus 71 lg~~p~~VQ~~~i~~ll----~G--~Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 71 FGMRHFDVQLLGGMVLN----ER--CIAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HSCCCCHHHHHHHHHHH----SS--EEEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCChHHHhhccccc----CC--eeeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 45678889999886554 33 3778899999999765444322112 23589999964 443 377778777
Q ss_pred CCCceEEEEEcChh
Q psy14604 177 APDFYVVTYVGDKD 190 (209)
Q Consensus 177 ~~~l~v~~y~G~~~ 190 (209)
+ +++|.+++|+..
T Consensus 142 l-gl~v~~i~GG~~ 154 (853)
T 2fsf_A 142 L-GLTVGINLPGMP 154 (853)
T ss_dssp T-TCCEEECCTTCC
T ss_pred c-CCeEEEEeCCCC
Confidence 7 788888877643
No 70
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=96.37 E-value=0.014 Score=60.88 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=60.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHH-hC--CC
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFET-WA--PD 179 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~-~~--~~ 179 (209)
.+-|.|.+++.-+. ..+...+++-.+|.|||+.+.-.|...+.... .+.+|+|+|. +|+.|=.+++.. |. .+
T Consensus 926 ~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 926 FFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp BCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 37789999986553 45667999999999999987666655554432 3459999995 566665555543 32 26
Q ss_pred ceEEEEEcChhHH
Q psy14604 180 FYVVTYVGDKDCR 192 (209)
Q Consensus 180 l~v~~y~G~~~~r 192 (209)
++|..++|+....
T Consensus 1002 ~~V~~ltGd~~~~ 1014 (1724)
T 4f92_B 1002 KKVVLLTGETSTD 1014 (1724)
T ss_dssp CCEEECCSCHHHH
T ss_pred CEEEEEECCCCcc
Confidence 7899999987654
No 71
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.21 E-value=0.016 Score=46.96 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=48.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCC--CCcEEEEeCcc-cHHHHHHHHHHhC
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC--KGPFLVSAPLS-TIINWEREFETWA 177 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~--~~~~LIV~P~s-l~~qW~~E~~~~~ 177 (209)
..++++|.+++..+. .+...++.-.+|.|||.+...++......... ...+|+++|.. +..|..+.+....
T Consensus 60 ~p~~~~q~~~i~~i~----~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 60 LPVKKFESEILEAIS----QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp SGGGGGHHHHHHHHH----HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHh----cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHh
Confidence 458899999998775 56678889999999998766655443332211 22578888964 4566767766543
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.67 E-value=0.045 Score=53.73 Aligned_cols=80 Identities=18% Similarity=0.035 Sum_probs=55.1
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHH---HHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIIN---WEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~q---W~~E~~~~ 176 (209)
++..++|-|..|+--|+ ++. |....+|-|||+.++..++..... ...++||||.. |..| |...|..|
T Consensus 76 lG~~Pt~VQ~~~ip~Ll----qG~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~ 146 (997)
T 2ipc_A 76 LGMRHFDVQLIGGAVLH----EGK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRG 146 (997)
T ss_dssp TCCCCCHHHHHHHHHHH----TTS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHT
T ss_pred hCCCCcHHHHhhccccc----CCc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 45677888999886554 443 878899999999765444222222 23589999965 4444 77777777
Q ss_pred CCCceEEEEEcChh
Q psy14604 177 APDFYVVTYVGDKD 190 (209)
Q Consensus 177 ~~~l~v~~y~G~~~ 190 (209)
+ +++|.+++|+..
T Consensus 147 l-GLsv~~i~Gg~~ 159 (997)
T 2ipc_A 147 L-GLSVGVIQHAST 159 (997)
T ss_dssp T-TCCEEECCTTCC
T ss_pred c-CCeEEEEeCCCC
Confidence 7 788888877654
No 73
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.40 E-value=0.015 Score=51.84 Aligned_cols=59 Identities=15% Similarity=0.073 Sum_probs=38.4
Q ss_pred CCceEEEcCCCCchHHHHHH-HHHHHHhhCCCCCcEEEEeCcc-cHHHHHHHHHHhCCCceEEEEEcC
Q psy14604 123 NIDTILADEMGLGKTIQTIT-FLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETWAPDFYVVTYVGD 188 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia-~l~~~~~~~~~~~~~LIV~P~s-l~~qW~~E~~~~~~~l~v~~y~G~ 188 (209)
+...|+..++|.|||+.++. ++..+...+ ..+||++|.. |+.|+.+.|. .+.+..+.|.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g---~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~ 62 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKR---LRTVILAPTRVVASEMYEALR----GEPIRYMTPA 62 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHTT----TSCEEEC---
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEECcHHHHHHHHHHHhC----CCeEEEEecC
Confidence 34578999999999999744 443444332 3599999964 5677777765 4555555443
No 74
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.98 E-value=0.077 Score=49.61 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=52.1
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc-HHHHHHHHHHh
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IINWEREFETW 176 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl-~~qW~~E~~~~ 176 (209)
...|=+.|.+||..... ...-.|+.-..|.|||.+.+.+|..+...+ .++||++|... +.+-.+.+...
T Consensus 187 ~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~---~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQG---LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp STTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEcCchHHHHHHHHHHHhc
Confidence 35688999999987642 344578888999999999999988887754 46999999755 45566666554
No 75
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=94.86 E-value=0.022 Score=51.08 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=38.7
Q ss_pred hcCCCceEEEcCCCCchHHHH-HHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHH
Q psy14604 120 WGQNIDTILADEMGLGKTIQT-ITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFET 175 (209)
Q Consensus 120 ~~~~~g~iLaD~mGLGKT~q~-ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~ 175 (209)
+..+...|+...+|.|||++. +.++..+... ...+||++|. .|+.|+.+++..
T Consensus 18 l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~---~~~~lvl~Ptr~La~Q~~~~l~g 72 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ---RLRTAVLAPTRVVAAEMAEALRG 72 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT---TCCEEEEECSHHHHHHHHHHTTT
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEECchHHHHHHHHHHhcC
Confidence 446777899999999999995 4444444332 2459999996 567889988863
No 76
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.60 E-value=0.024 Score=50.66 Aligned_cols=53 Identities=23% Similarity=0.267 Sum_probs=38.6
Q ss_pred cCCCceEEEcCCCCchHHHHHH-HHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHh
Q psy14604 121 GQNIDTILADEMGLGKTIQTIT-FLYSLFKEGHCKGPFLVSAPL-STIINWEREFETW 176 (209)
Q Consensus 121 ~~~~g~iLaD~mGLGKT~q~ia-~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~ 176 (209)
..+...|+..++|.|||+.++. ++..+... ...+||+||. .|+.|+.++|..+
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~---~~~~lil~Ptr~La~Q~~~~l~~~ 60 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARR---RLRTLVLAPTRVVLSEMKEAFHGL 60 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTTTS
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc---CCeEEEEcchHHHHHHHHHHHhcC
Confidence 3567789999999999999644 44334332 2359999996 5678899888754
No 77
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=94.59 E-value=0.15 Score=53.20 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=59.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh-C-------CCCCcEEEEeCc-ccHHHHHHHH
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-G-------HCKGPFLVSAPL-STIINWEREF 173 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~-~-------~~~~~~LIV~P~-sl~~qW~~E~ 173 (209)
..|-+.|..++.-+ +..+...+++-.+|.|||+.+.-.++..+.. . .....+|+|+|. +|+.+=.++|
T Consensus 78 ~~ln~iQs~~~~~a---l~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 78 KTLNRIQSKLYRAA---LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp SBCCHHHHHTHHHH---HTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH---HcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 35788999988544 4567789999999999999876555443322 1 123358999995 6666677777
Q ss_pred HHhC--CCceEEEEEcChh
Q psy14604 174 ETWA--PDFYVVTYVGDKD 190 (209)
Q Consensus 174 ~~~~--~~l~v~~y~G~~~ 190 (209)
.+.+ .+++|..++|+..
T Consensus 155 ~~~~~~~gi~V~~~tGd~~ 173 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQ 173 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCS
T ss_pred HHHHhhCCCEEEEEECCCC
Confidence 6544 2678888998753
No 78
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.89 E-value=0.21 Score=44.59 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=46.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCC-ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHH
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNI-DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII 167 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~-g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~ 167 (209)
..|-+-|.+++..+......+. -.+|--..|.|||..+.+++..+...+. ..+++++|.....
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa 87 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAK 87 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHH
Confidence 3577899999987765544444 4666778999999888888777766543 3689999976653
No 79
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=93.64 E-value=0.05 Score=51.52 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=39.2
Q ss_pred cCCCceEEEcCCCCchHHHH-HHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHh
Q psy14604 121 GQNIDTILADEMGLGKTIQT-ITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETW 176 (209)
Q Consensus 121 ~~~~g~iLaD~mGLGKT~q~-ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~ 176 (209)
..+...|+..++|.|||+.+ ++++..+... ...+||++|. .|+.|+.+.|..+
T Consensus 239 ~~g~dvlv~apTGSGKTl~~ll~il~~l~~~---~~~~lilaPTr~La~Q~~~~l~~~ 293 (673)
T 2wv9_A 239 KKRQLTVLDLHPGAGKTRRILPQIIKDAIQK---RLRTAVLAPTRVVAAEMAEALRGL 293 (673)
T ss_dssp STTCEEEECCCTTTTTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTTTS
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---CCcEEEEccHHHHHHHHHHHHhcC
Confidence 36777899999999999996 4444443332 2359999996 5678899988765
No 80
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.37 E-value=0.28 Score=45.69 Aligned_cols=67 Identities=24% Similarity=0.356 Sum_probs=48.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH-HHHHHHHHH
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFET 175 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~-~qW~~E~~~ 175 (209)
..|-+.|.+++..+. ...-.++--..|.|||.++..++..+... ...++||++|.... .+-...+..
T Consensus 179 ~~ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 457899999997664 34456777889999999988888776543 23469999997655 444555544
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=93.01 E-value=0.53 Score=45.42 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=54.1
Q ss_pred cCCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHH---HHHHHHHh
Q psy14604 101 TGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIIN---WEREFETW 176 (209)
Q Consensus 101 ~~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~q---W~~E~~~~ 176 (209)
++...++-|+-|.--|+ .|.|.-.-+|-|||+.+...++.. ......+.||+|.. |..+ |...+-.|
T Consensus 72 lg~r~~dvQligg~~L~------~G~iaEM~TGEGKTLva~lp~~ln---AL~G~~vhVvT~ndyLA~rdae~m~~l~~~ 142 (822)
T 3jux_A 72 LGMRPFDVQVMGGIALH------EGKVAEMKTGEGKTLAATMPIYLN---ALIGKGVHLVTVNDYLARRDALWMGPVYLF 142 (822)
T ss_dssp TSCCCCHHHHHHHHHHH------TTCEEECCTTSCHHHHTHHHHHHH---HTTSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHh------CCChhhccCCCCccHHHHHHHHHH---HhcCCceEEEeccHHHHHhHHHHHHHHHHH
Confidence 56777788887764442 567888999999999755433211 11234589999964 4444 99999999
Q ss_pred CCCceEEEEEc
Q psy14604 177 APDFYVVTYVG 187 (209)
Q Consensus 177 ~~~l~v~~y~G 187 (209)
+ .+.|.+.+.
T Consensus 143 L-glsvg~i~~ 152 (822)
T 3jux_A 143 L-GLRVGVINS 152 (822)
T ss_dssp T-TCCEEEEET
T ss_pred h-CCEEEEEcC
Confidence 8 788888776
No 82
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=92.97 E-value=0.078 Score=47.35 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=34.9
Q ss_pred CCCc-eEEEcCCCCchHHHHHH-HHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHH
Q psy14604 122 QNID-TILADEMGLGKTIQTIT-FLYSLFKEGHCKGPFLVSAPL-STIINWEREFET 175 (209)
Q Consensus 122 ~~~g-~iLaD~mGLGKT~q~ia-~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~ 175 (209)
.+.. .|+...+|.|||++.+. +|..+... ...+||++|. .|+.|+.+++..
T Consensus 17 ~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~---~~~~lvl~Ptr~La~Q~~~~l~g 70 (451)
T 2jlq_A 17 RKKRLTIMDLHPGAGKTKRILPSIVREALLR---RLRTLILAPTRVVAAEMEEALRG 70 (451)
T ss_dssp STTCEEEECCCTTSSCCTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTTT
T ss_pred hcCCeEEEECCCCCCHhhHHHHHHHHHHHhc---CCcEEEECCCHHHHHHHHHHhcC
Confidence 3344 47788999999997444 44443332 2459999996 566889888753
No 83
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=92.78 E-value=0.023 Score=53.95 Aligned_cols=60 Identities=13% Similarity=0.043 Sum_probs=40.3
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCceEEEEEcC
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYVVTYVGD 188 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l~v~~y~G~ 188 (209)
.+...|+.-.+|.|||.+.+..+.. . ...+||++|. .++.|+.+.+...+ ...+...+|.
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll~---~---g~~vLVl~PTReLA~Qia~~l~~~~-g~~vg~~vG~ 291 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYAA---Q---GYKVLVLNPSVAATLGFGAYMSKAH-GIDPNIRTGV 291 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHH---T---TCCEEEEESCHHHHHHHHHHHHHHH-SCCCEEECSS
T ss_pred cCCeEEEEeCCchhHHHHHHHHHHH---C---CCeEEEEcchHHHHHHHHHHHHHHh-CCCeeEEECc
Confidence 5556788899999999776655432 2 2359999996 45678988887654 2333344443
No 84
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=92.56 E-value=0.11 Score=48.73 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=39.4
Q ss_pred hhcCCCceEEEcCCCCchHHHH-HHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHH
Q psy14604 119 SWGQNIDTILADEMGLGKTIQT-ITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFE 174 (209)
Q Consensus 119 ~~~~~~g~iLaD~mGLGKT~q~-ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~ 174 (209)
....+...|+...+|.|||++. +.+|..+... ...+||++|. .|+.|+.++|.
T Consensus 182 ~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~---~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 182 IFRKKRLTIMDLHPGAGKTKRILPSIVREALKR---RLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp GGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTT
T ss_pred HHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC---CCeEEEEcChHHHHHHHHHHhc
Confidence 3447778999999999999985 5555555442 2359999995 56788888875
No 85
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.04 E-value=0.51 Score=43.73 Aligned_cols=64 Identities=19% Similarity=0.048 Sum_probs=48.1
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
+..|-+.|.+++..+. ...-.++--..|.|||..+.+++..+...+ .+++++||.......-.|
T Consensus 187 ~~~L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g---~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTTKAVADLAESLG---LEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TTTCCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEecCcHHHHHHhHh
Confidence 4668899999998765 455577788899999988877776655442 469999998776665544
No 86
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.88 E-value=0.55 Score=45.30 Aligned_cols=67 Identities=24% Similarity=0.390 Sum_probs=48.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHH-HHHHHHHH
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII-NWEREFET 175 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~-qW~~E~~~ 175 (209)
..|-+.|.++|..+. ...-.++--..|.|||.++..++..+... ...++||++|..... +-.+.+..
T Consensus 355 ~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 457899999997664 34456778889999999988888776643 234699999976654 44444443
No 87
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.83 E-value=0.41 Score=46.18 Aligned_cols=68 Identities=25% Similarity=0.316 Sum_probs=48.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH-HHHHHHHHHh
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI-INWEREFETW 176 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~-~qW~~E~~~~ 176 (209)
..|-+.|.++|..+. ...-.++--..|.|||.++..++..+.... ..++||++|.... .+-.+.+...
T Consensus 359 ~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~~i~~l~~~~--~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSATIVYHLSKIH--KDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHHHHHHHHhCC--CCeEEEEcCcHHHHHHHHHHHHhh
Confidence 457899999997664 334467777899999999888887765531 3469999997665 4455556554
No 88
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=91.12 E-value=0.27 Score=46.63 Aligned_cols=60 Identities=13% Similarity=0.046 Sum_probs=42.4
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCceEEEEEcChh
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYVVTYVGDKD 190 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l~v~~y~G~~~ 190 (209)
.+...++.-.+|.|||..++..+. .. ...||++|. .|+.|+.+.+... .+.|.+++|...
T Consensus 154 ~rk~vlv~apTGSGKT~~al~~l~---~~----~~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~~~ 214 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQKYF---SA----KSGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGEER 214 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH---HS----SSEEEEESSHHHHHHHHHHHHHT--TCCEEEECSSCE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH---hc----CCeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECCee
Confidence 444578889999999995554443 22 235999996 5567788888875 567777777654
No 89
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=90.36 E-value=0.63 Score=42.80 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=52.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCC-CCCcEEEEeCccc-HHHHHHHHHHhC---
Q psy14604 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH-CKGPFLVSAPLST-IINWEREFETWA--- 177 (209)
Q Consensus 103 ~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~-~~~~~LIV~P~sl-~~qW~~E~~~~~--- 177 (209)
..|-+.|.++|. ...+..++--..|.|||.+.+.-+..+..... ....+|+|+++.. +.+-.+.+...+
T Consensus 8 ~~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 8 DSLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp TTCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred hcCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 357899999985 12333455556899999999998888876532 2346999998654 444666666653
Q ss_pred -CCceEEEEEc
Q psy14604 178 -PDFYVVTYVG 187 (209)
Q Consensus 178 -~~l~v~~y~G 187 (209)
..+.|.++|+
T Consensus 82 ~~~~~v~Tfhs 92 (647)
T 3lfu_A 82 QGGMWVGTFHG 92 (647)
T ss_dssp CTTCEEEEHHH
T ss_pred cCCcEEEcHHH
Confidence 2445555544
No 90
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=89.20 E-value=0.42 Score=45.82 Aligned_cols=67 Identities=16% Similarity=0.054 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHHHHHHHHHh
Q psy14604 107 AYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETW 176 (209)
Q Consensus 107 ~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~qW~~E~~~~ 176 (209)
+.|.+.+.-+. ..+...++.-++|.|||.+.-.++............+||++|.. ++.|+.+.+...
T Consensus 96 ~~q~~~i~~~l---~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~ 163 (773)
T 2xau_A 96 HAQRDEFLKLY---QNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEE 163 (773)
T ss_dssp GGGHHHHHHHH---HHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHH
Confidence 34555543222 24556889999999999954444332211111123488999964 456677666554
No 91
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.06 E-value=1.2 Score=41.44 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhC-CCCCcEEEEeCcccHH-HHHHHHH
Q psy14604 106 HAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEG-HCKGPFLVSAPLSTII-NWEREFE 174 (209)
Q Consensus 106 ~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~-~~~~~~LIV~P~sl~~-qW~~E~~ 174 (209)
-+.|..++.-+. .+.-.++--..|.|||.++..++..+.... .....++|++|..-+. +-.+.+.
T Consensus 151 ~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~ 217 (608)
T 1w36_D 151 INWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLG 217 (608)
T ss_dssp CCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHH
Confidence 477999987654 455678888999999987776666554321 1223689999976554 3444444
No 92
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=87.51 E-value=1.3 Score=41.19 Aligned_cols=80 Identities=11% Similarity=0.067 Sum_probs=53.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh-CCCCCcEEEEeCcc-cHHHHHHHHHHhCC---
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-GHCKGPFLVSAPLS-TIINWEREFETWAP--- 178 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~-~~~~~~~LIV~P~s-l~~qW~~E~~~~~~--- 178 (209)
.|-+.|.++|.. ..+..++--..|.|||.+.+.-+..+... +.....+|+|+.+. ....-.+.+....+
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~ 75 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCccc
Confidence 467889999852 23345556678999999998887777665 32334689998764 44556666777653
Q ss_pred --CceEEEEEcCh
Q psy14604 179 --DFYVVTYVGDK 189 (209)
Q Consensus 179 --~l~v~~y~G~~ 189 (209)
.+.|.++|+=.
T Consensus 76 ~~~~~v~Tfhs~~ 88 (673)
T 1uaa_A 76 ARGLMISTFHTLG 88 (673)
T ss_dssp TTTSEEEEHHHHH
T ss_pred ccCCEEEeHHHHH
Confidence 35666666543
No 93
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=86.58 E-value=0.97 Score=41.06 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=40.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCceEEEEE
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYVVTYV 186 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l~v~~y~ 186 (209)
-.|.--.|.|||+.+.+++.. ..+|+|||||. ..+.+|.++|..|+|+- |..|-
T Consensus 17 ~~l~g~~gs~ka~~~a~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp 71 (483)
T 3hjh_A 17 RLLGELTGAACATLVAEIAER------HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLA 71 (483)
T ss_dssp EEEECCCTTHHHHHHHHHHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECC
T ss_pred EEEeCCCchHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEe
Confidence 466677899999987776532 24589999995 66788999999998764 55543
No 94
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=81.54 E-value=2 Score=34.87 Aligned_cols=36 Identities=28% Similarity=0.197 Sum_probs=26.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
-.++.-+||.|||..++.++..+...+ ..++|+.|.
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~ 49 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPK 49 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEec
Confidence 356688999999999998887765543 347777664
No 95
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=79.32 E-value=6.5 Score=34.52 Aligned_cols=71 Identities=17% Similarity=0.061 Sum_probs=46.4
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc-HHHHHHHHHHhC
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IINWEREFETWA 177 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl-~~qW~~E~~~~~ 177 (209)
.+.|.|||...+..+. ...-.++.-.-+.|||..+.++++..... .....+++++|..- ...+-+++..++
T Consensus 161 p~~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp ECCCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 3689999999887653 12336777788999999877766543332 23346899999643 333446666653
No 96
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=77.70 E-value=3.2 Score=35.07 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=36.1
Q ss_pred CchHHHHHHHHHHHhhcCCC---ceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 105 LHAYQLEGINWLRYSWGQNI---DTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~---g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
++|+|.+.+..+......+. ..+|.-+.|.|||..+.++...+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 67999999888877766554 3577889999999999999877754
No 97
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=77.19 E-value=6.3 Score=30.14 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=20.3
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
.+.+|.-+.|.|||..+.++...+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46677889999999988877666543
No 98
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=76.74 E-value=6.7 Score=36.98 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=51.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh-CCCCCcEEEEeCcccH-HHHHHHHHHhC----
Q psy14604 104 QLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE-GHCKGPFLVSAPLSTI-INWEREFETWA---- 177 (209)
Q Consensus 104 ~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~-~~~~~~~LIV~P~sl~-~qW~~E~~~~~---- 177 (209)
.|-+.|.++|.. ..+..++--..|.|||.+.+.-+..+... +.....+|+|+...-. ..-.+.+...+
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~ 84 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAA 84 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGG
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccc
Confidence 578999999852 23334555578999999998888777764 3233458999886543 33555555543
Q ss_pred CCceEEEEEcC
Q psy14604 178 PDFYVVTYVGD 188 (209)
Q Consensus 178 ~~l~v~~y~G~ 188 (209)
..+.|.++|+-
T Consensus 85 ~~~~v~Tfhs~ 95 (724)
T 1pjr_A 85 EDVWISTFHSM 95 (724)
T ss_dssp TTSEEEEHHHH
T ss_pred cCcEEeeHHHH
Confidence 24667776664
No 99
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=72.24 E-value=12 Score=34.33 Aligned_cols=71 Identities=17% Similarity=0.058 Sum_probs=46.1
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCccc-HHHHHHHHHHhC
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLST-IINWEREFETWA 177 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl-~~qW~~E~~~~~ 177 (209)
.+.|.|||...+..+. ...-.++.-.-|.|||..+.+++....... ....+++++|..- +...-.++..++
T Consensus 161 ~~~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp BCCCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 4679999999876552 233467777889999998766654443332 2346899999533 333445666664
No 100
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=70.88 E-value=6.8 Score=31.69 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=25.9
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
++--+||-|||..+|..+......+ ..+||+.|.
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~g---~kVli~k~~ 65 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFAK---QHAIVFKPC 65 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEec
Confidence 3577999999999988876664443 358999885
No 101
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=69.95 E-value=5.5 Score=30.81 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=25.2
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
-++.-.||.|||..++.++..+...+ .+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeec
Confidence 46677899999999888776654433 357777664
No 102
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=69.02 E-value=5.5 Score=39.64 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=38.8
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhCC
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAP 178 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~ 178 (209)
|+|- .|.|||...+.-|..+...+....++|+|||..+.-+-+..+....+
T Consensus 6 V~ag-AGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 6 LVGR-SGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEEC-TTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEeC-CCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhh
Confidence 4444 69999999999888887776555679999998887776666665543
No 103
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=67.98 E-value=7.1 Score=30.63 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=25.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
-++--.||.|||..++..+......+ ..++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g---~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAK---QKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEec
Confidence 35577899999998888776654332 358888875
No 104
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=67.27 E-value=15 Score=28.55 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=32.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFET 175 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~ 175 (209)
-.+++-+.|.|||.-++.+++...... ..+++++.-..-..+..+.+..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeecccCCHHHHHHHHHH
Confidence 368899999999999988876543332 2457887765555555444443
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=66.74 E-value=18 Score=27.05 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHHhhc-----CCCceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 106 HAYQLEGINWLRYSWG-----QNIDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 106 ~~~Q~~gv~~l~~~~~-----~~~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
.+.|.+++..+..... .+.+.+|.-..|.|||..+-+++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578888877754432 234567777899999998877766554
No 106
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=66.54 E-value=19 Score=30.10 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc
Q psy14604 112 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS 164 (209)
Q Consensus 112 gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s 164 (209)
+++-+..-+..+.-.+|+-..|.|||.-++.++......+ .++|+++-..
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE~ 106 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLEM 106 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESSS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECCC
Confidence 4444432234444579999999999998888876665433 5788887643
No 107
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.36 E-value=6.5 Score=34.88 Aligned_cols=45 Identities=20% Similarity=0.176 Sum_probs=34.0
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
...|.+|--..|.|||+.|-|+...+ ..+++.|....++..|.-|
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGGSCSSTTH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHhhccccch
Confidence 34577889999999999988876554 3468888888887777544
No 108
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.10 E-value=5.8 Score=35.47 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=32.8
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
..|.+|--..|.|||+.|-|+...+ ..+++.|....++..|..|
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT------NATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCSSCSSH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEehhhhhhcccch
Confidence 3467788899999999988876554 3468888887877777543
No 109
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=62.75 E-value=17 Score=32.23 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 112 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 112 gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
+++.+..-+..+.-.||+-..|.|||.-++.++...... ..++|++.-.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE 234 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE 234 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 444444333444457999999999999999988776654 3478888764
No 110
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=61.78 E-value=25 Score=28.92 Aligned_cols=25 Identities=16% Similarity=-0.021 Sum_probs=19.6
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
...+|.-+.|.|||..+-++...+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 4678888999999998877765553
No 111
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.62 E-value=6.3 Score=35.25 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=32.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
..|.+|--..|.|||+.+-|+...+ ..+++.|....++..|.-|
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~------~~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI------GANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGTCCSSSSH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehhhhccccchH
Confidence 3467888899999999998877654 2357777777776666544
No 112
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=60.20 E-value=18 Score=30.22 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=21.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
..+.+|.-+.|.|||..+.++...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678888999999999988877666
No 113
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=59.98 E-value=6.3 Score=39.41 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=36.6
Q ss_pred EEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHHhCCCceEEEE
Q psy14604 128 LADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFETWAPDFYVVTY 185 (209)
Q Consensus 128 LaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~~~~~l~v~~y 185 (209)
|.--.|.+||+.+.+++. . ..+|+|||||. ..+.+|.+||..|+ +..|..|
T Consensus 22 l~G~~gs~ka~~~a~l~~----~--~~~p~lvv~~~~~~A~~l~~el~~f~-~~~V~~f 73 (1151)
T 2eyq_A 22 LGELTGAACATLVAEIAE----R--HAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNL 73 (1151)
T ss_dssp BCCCCTTHHHHHHHHHHH----S--SSSEEEEEESSHHHHHHHHHHHGGGC-SSCEEEC
T ss_pred EeCCchHHHHHHHHHHHH----h--hCCCEEEEeCCHHHHHHHHHHHHhhc-CCcEEEe
Confidence 344578899987765542 1 23589999995 66788999999997 5455554
No 114
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=59.81 E-value=7.7 Score=31.14 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=22.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~ 151 (209)
.|-+-+.|.|||+.+++++..+...+
T Consensus 8 ~Itgt~t~vGKT~vt~~L~~~l~~~G 33 (228)
T 3of5_A 8 FIIGTDTEVGKTYISTKLIEVCEHQN 33 (228)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHCC
Confidence 46688999999999999998887665
No 115
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.80 E-value=8.4 Score=34.56 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=33.4
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
..|.+|--..|.|||+.|-|+...+ ..+++.|....++..|.-|
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~------~~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT------SATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH------TCEEEEEESGGGCCSSSSH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh------CCCEEEEEHHHhhhccCch
Confidence 3467788899999999988887654 3468888888887777555
No 116
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=59.01 E-value=12 Score=30.13 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=25.8
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTI 166 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~ 166 (209)
...+.+|.-+.|.|||..+-++...+ ..+++.|....+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET------NATFIRVVGSELV 88 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEGGGGC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehHHHH
Confidence 44567888899999999887765432 3355555554443
No 117
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.81 E-value=5.6 Score=35.47 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=32.0
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
..|.+|.-..|.|||+.+-|+...+ ..+++.|....++..|.-|
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l~~~~~Ge 249 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEFVHKYLGE 249 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGTCCSSCSH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchhhccccch
Confidence 3467778899999999998876654 3467777777777666433
No 118
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=58.51 E-value=7.4 Score=31.80 Aligned_cols=26 Identities=23% Similarity=0.048 Sum_probs=22.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~ 151 (209)
.|.+-+.|.|||+.+++++..+...+
T Consensus 25 ~ItgT~t~vGKT~vs~gL~~~L~~~G 50 (242)
T 3qxc_A 25 FISATNTNAGKTTCARLLAQYCNACG 50 (242)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCC
Confidence 46688999999999999998887764
No 119
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=58.26 E-value=34 Score=29.32 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=34.1
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc
Q psy14604 112 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS 164 (209)
Q Consensus 112 gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s 164 (209)
.++.+..-+..+.-.||+-..|.|||.-++.++..+... ..++|++....
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlEm 84 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLEM 84 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESSS
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCC
Confidence 344443233344457899999999999998887766552 35788887643
No 120
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=57.76 E-value=16 Score=28.16 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=25.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
.|.+-..|.|||..++.+...+...+ ..+|++-|
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la~~G---~rVll~dp 38 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAKAAG---YRTAGYKP 38 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTT---CCEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEcc
Confidence 35566789999999999988887654 34787766
No 121
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=57.14 E-value=18 Score=30.12 Aligned_cols=43 Identities=14% Similarity=0.075 Sum_probs=30.4
Q ss_pred CchHHHHHHHHHHHhhcCCC----ceEEEcCCCCchHHHHHHHHHHH
Q psy14604 105 LHAYQLEGINWLRYSWGQNI----DTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 105 L~~~Q~~gv~~l~~~~~~~~----g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
-.+.+...+..+......+. +.+|.-+.|.|||..+-++...+
T Consensus 48 G~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 48 GQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35566666666655544433 46788899999999988887665
No 122
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=57.03 E-value=17 Score=29.54 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=27.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCC-CCcEEEEeCccc
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHC-KGPFLVSAPLST 165 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~-~~~~LIV~P~sl 165 (209)
..+|.-+.|.|||..+-++...+...... ..+++.|-+..+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 46788899999999998887666554322 234555544443
No 123
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=56.97 E-value=31 Score=30.79 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=31.4
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhCCCceEEEE
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTY 185 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~~l~v~~y 185 (209)
+++--.|.|||-++..++..+...+ . .+++|+--.--..=...+..|.....+.+|
T Consensus 104 livG~~G~GKTTt~~kLA~~l~~~G--~-kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYFQKRG--Y-KVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTT--C-CEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred EEECcCCCCHHHHHHHHHHHHHHCC--C-eEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 4455699999999988887775543 3 355555322111223445555533344344
No 124
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=56.85 E-value=10 Score=31.38 Aligned_cols=39 Identities=10% Similarity=-0.107 Sum_probs=25.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 169 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW 169 (209)
+.+|.-..|.|||..+-++...+ ..+++.|....+...|
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~~~ 76 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELESGN 76 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhhcc
Confidence 56777899999999988876655 2345655544444334
No 125
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=56.85 E-value=19 Score=36.08 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=40.2
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCC---CCCcEEEEeCcc
Q psy14604 102 GMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGH---CKGPFLVSAPLS 164 (209)
Q Consensus 102 ~~~L~~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~---~~~~~LIV~P~s 164 (209)
+..|-+-|.++|. ..+...++.-..|.|||.+.+.=+..+...+. ....+|||++..
T Consensus 8 ~~~~t~eQ~~~i~------~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~ 67 (1232)
T 3u4q_A 8 DSTWTDDQWNAIV------STGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTN 67 (1232)
T ss_dssp --CCCHHHHHHHH------CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSH
T ss_pred CCCCCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccH
Confidence 3668899999884 13445677788999999998887766665543 334689998853
No 126
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=56.75 E-value=37 Score=29.74 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHH
Q psy14604 112 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN 168 (209)
Q Consensus 112 gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~q 168 (209)
+++.+..-+..+.-.+|+-..|.|||.-++.++....... ..++|++....-..+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE~~~~~ 243 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLEMPAAQ 243 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSSCHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECCCCHHH
Confidence 3444432233444468899999999999988877665431 346888876443333
No 127
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=56.37 E-value=14 Score=29.30 Aligned_cols=35 Identities=14% Similarity=0.032 Sum_probs=24.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
-++--.||+|||...|-.+......+ ..+|++-|.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 35577999999977776665544432 458888775
No 128
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=55.89 E-value=8.6 Score=31.57 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.0
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEG 151 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~ 151 (209)
.|-+-+.|.|||+.+++++..+...+
T Consensus 30 ~Itgt~t~vGKT~vt~gL~~~l~~~G 55 (251)
T 3fgn_A 30 VVTGTGTGVGKTVVCAALASAARQAG 55 (251)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC
Confidence 36688999999999999998887664
No 129
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=55.55 E-value=34 Score=26.38 Aligned_cols=50 Identities=22% Similarity=0.241 Sum_probs=33.6
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFE 174 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~ 174 (209)
.+.-.+|+-..|.|||.-++.++..+... ..+++++.-.....+..+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCCHHHHHHHHH
Confidence 33345777889999999988887766543 345788776555555544444
No 130
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=55.52 E-value=11 Score=33.37 Aligned_cols=45 Identities=22% Similarity=0.161 Sum_probs=30.6
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
.+.+|.-..|.|||..+-++...+-. ..+++.|....+...|..+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~----~~~~~~~~~~~~~~~~~~~ 108 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGS----KVPFCPMVGSEVYSTEIKK 108 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCT----TSCEEEEEGGGGCCSSSCH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCC----CceEEEEeHHHHHHHhhhh
Confidence 46788999999999999888766421 1356666666555545433
No 131
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=55.44 E-value=17 Score=31.94 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=24.7
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
.+.+|.-..|.|||..+-++...+ ...+++.|....++..|..+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~~g~ 211 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKWLGE 211 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC---------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhhcch
Confidence 466788899999999887776543 12356666666666666543
No 132
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.84 E-value=9 Score=34.64 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=32.5
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
...|.+|.-..|.|||+.|-|+...+ ..+++.|....++..|.-|
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~------~~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT------DATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCCCSSSH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc------CCCeEEEEhHHhhcccCCH
Confidence 34467778899999999988876554 2357777777777766443
No 133
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=54.02 E-value=8.7 Score=32.07 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=27.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWE 170 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~ 170 (209)
+.+|.-+.|.|||..+-++...+ ..+++.|....++..|.
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~~ 92 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKWM 92 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHHHTTTG
T ss_pred eEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHHhhccc
Confidence 56788899999999888776543 23466565555544443
No 134
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=53.05 E-value=20 Score=26.11 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=20.5
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
...+|.-+.|.|||..+-+++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45678889999999998888766543
No 135
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=51.79 E-value=8.7 Score=32.76 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=26.7
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 169 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW 169 (209)
.+.+|.-+.|.|||..+-++...+ ..+++.|....++..|
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~------~~~~~~v~~~~l~~~~ 124 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKW 124 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH------TCEEEEEEHHHHHSCC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh------CCCEEEeeHHHHhhhh
Confidence 356788899999999988776654 2345555444444434
No 136
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=50.30 E-value=9.5 Score=31.68 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=20.8
Q ss_pred hcCCCceEEEcCCCCchHHHHHHHHHH
Q psy14604 120 WGQNIDTILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 120 ~~~~~g~iLaD~mGLGKT~q~ia~l~~ 146 (209)
+..+.+.+|..+.|.|||..+-++...
T Consensus 43 l~~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 43 ICTGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred HHcCCeEEEECCCCCcHHHHHHHHHHH
Confidence 334667889999999999988776543
No 137
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.19 E-value=16 Score=30.14 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=30.4
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc--cHHHHHHHHHHh
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS--TIINWEREFETW 176 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s--l~~qW~~E~~~~ 176 (209)
...+|.-+.|.|||..+-++...+.........++-+.+.. -+..+...+..|
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNF 113 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHH
Confidence 34788899999999988887766542211112344444432 234455444433
No 138
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=49.38 E-value=59 Score=28.48 Aligned_cols=50 Identities=10% Similarity=0.097 Sum_probs=34.1
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 112 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 112 gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
+++.+..-+..+.-.+|+-..|.|||.-++.++..+.... ..+++++...
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E 241 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLE 241 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESS
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECC
Confidence 4444443344555578899999999999988877665432 2368888754
No 139
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=49.36 E-value=12 Score=31.47 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=25.6
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTII 167 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~ 167 (209)
.+.+|.-+.|.|||..+-++...+ ...+++.|....++.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~-----~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVS 84 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT-----TSCEEEEEECCSSCC
T ss_pred ceEEEECCCCccHHHHHHHHHHHc-----CCCcEEEEEhHHHHh
Confidence 456788899999999888776543 123455555444433
No 140
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=48.66 E-value=42 Score=25.51 Aligned_cols=38 Identities=16% Similarity=-0.087 Sum_probs=24.9
Q ss_pred HHHHHHHHhhc--CCCceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 111 EGINWLRYSWG--QNIDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 111 ~gv~~l~~~~~--~~~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
..+..+..... .....+|.-+.|.|||..+-++...+.
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444433333 344567788999999998887766554
No 141
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=47.65 E-value=21 Score=26.04 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=19.8
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
...+|.-+.|.|||..+-++...+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34677889999999988887766543
No 142
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=46.84 E-value=17 Score=30.65 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=19.6
Q ss_pred CCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 132 MGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 132 mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
=|.|||-+++.+.+++...+. .+|+|
T Consensus 57 GGVGKTTtavNLA~aLA~~Gk---kVllI 82 (314)
T 3fwy_A 57 GGIGKSTTSSNLSAAFSILGK---RVLQI 82 (314)
T ss_dssp TTSSHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred CccCHHHHHHHHHHHHHHCCC---eEEEE
Confidence 378999999999888876642 35555
No 143
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=46.64 E-value=47 Score=25.92 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=18.5
Q ss_pred CceEEEcCCCCchHHHHHHHHHHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
.+.+|.-+.|.|||..+-++...+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 356778899999999887776543
No 144
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=46.60 E-value=36 Score=29.01 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=25.7
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWE 170 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~ 170 (209)
.+.+|.-+.|.|||..+-++... ...+++.|....+...|.
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~------~~~~~~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE------SNATFFNISAASLTSKYV 189 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH------TTCEEEEECSCCC-----
T ss_pred ceEEEECCCCCCHHHHHHHHHHh------hcCcEEEeeHHHhhcccc
Confidence 46788889999999988777433 234566666666655544
No 145
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=45.92 E-value=27 Score=27.07 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=24.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
+|.+---|.|||..++.+...+...+ .++|+|-.
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~g---~~VlliD~ 39 (237)
T 1g3q_A 6 SIVSGKGGTGKTTVTANLSVALGDRG---RKVLAVDG 39 (237)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHTT---CCEEEEEC
T ss_pred EEecCCCCCCHHHHHHHHHHHHHhcC---CeEEEEeC
Confidence 34455679999999999988776543 35777764
No 146
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=45.49 E-value=27 Score=27.44 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=23.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
+|.+---|.|||..++.+...+...+ .++|+|-
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~g---~~VlliD 38 (260)
T 3q9l_A 6 VVTSGKGGVGKTTSSAAIATGLAQKG---KKTVVID 38 (260)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhCC---CcEEEEE
Confidence 34455678999999999988876543 3477764
No 147
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=45.09 E-value=31 Score=27.23 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=24.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
+|.+---|.|||..++.+...+...+ .++|+|-
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~g---~~VlliD 38 (263)
T 1hyq_A 6 TVASGKGGTGKTTITANLGVALAQLG---HDVTIVD 38 (263)
T ss_dssp EEEESSSCSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhCC---CcEEEEE
Confidence 35566779999999999988876543 3577775
No 148
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=44.63 E-value=13 Score=28.85 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=20.7
Q ss_pred cCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 130 DEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 130 D~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
---|.|||..++.+...+...+ .++|+|
T Consensus 7 ~kGGvGKTt~a~~LA~~la~~g---~~Vlli 34 (254)
T 3kjh_A 7 GKGGVGKTTVAAGLIKIMASDY---DKIYAV 34 (254)
T ss_dssp CSSSHHHHHHHHHHHHHHTTTC---SCEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHCC---CeEEEE
Confidence 3568999999999988776543 346666
No 149
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=44.33 E-value=30 Score=28.02 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=23.3
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
++--.||-|||...|-.+......+ ..+||+-|.
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~g---~kvli~kp~ 65 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYAK---QKVVVFKPA 65 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC---CceEEEEec
Confidence 5677899999987777764443332 347888774
No 150
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=44.06 E-value=22 Score=28.63 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=19.4
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
..+.+|.-+.|.|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4467888899999999887776544
No 151
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=43.94 E-value=32 Score=25.61 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=18.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
..+|.-+.|.|||..+-++...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36778899999999887776554
No 152
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=43.91 E-value=20 Score=28.54 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=19.9
Q ss_pred CCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 131 EMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 131 ~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
--|.|||..++.+...+...+ .++|+|
T Consensus 9 KGGvGKTT~a~nLA~~la~~G---~~Vlli 35 (269)
T 1cp2_A 9 KGGIGKSTTTQNLTSGLHAMG---KTIMVV 35 (269)
T ss_dssp CTTSSHHHHHHHHHHHHHTTT---CCEEEE
T ss_pred CCCCcHHHHHHHHHHHHHHCC---CcEEEE
Confidence 558999999999887776543 346664
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=43.84 E-value=51 Score=24.62 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=18.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
..+|.-+.|.|||..+-++...+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45778899999999887776554
No 154
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=43.70 E-value=38 Score=24.40 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=24.8
Q ss_pred hcCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 120 WGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 120 ~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
.......+|.-+.|.|||..+-++-... .....|++|-|.
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~~~---~~~~~~~v~~~~ 60 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQFG---RNAQGEFVYREL 60 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHHSS---TTTTSCCEEEEC
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHHhC---CccCCCEEEECC
Confidence 3455567889999999998876553221 112345555555
No 155
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=43.55 E-value=30 Score=28.08 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=28.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe-CcccHHHHH
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA-PLSTIINWE 170 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~-P~sl~~qW~ 170 (209)
.++.--.|.|||..++++...+...+. .-.++.+ |-.-...|.
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~--~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGV--RVMAGVVETHGRAETEA 52 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTC--CEEEEECCCTTCHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCC--CEEEEEeCCCCChhHHH
Confidence 567888999999999999888876642 2223333 434455555
No 156
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=43.52 E-value=35 Score=29.45 Aligned_cols=43 Identities=16% Similarity=0.063 Sum_probs=28.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN 168 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~q 168 (209)
+.-.+|+-..|.|||.-++.++..+...+ .++++|.......+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g---~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAG---GTCAFIDAEHALDP 116 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCC---CeEEEEECCCChhH
Confidence 33457788999999999998887665432 34555554433333
No 157
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=43.01 E-value=22 Score=28.92 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=20.6
Q ss_pred cCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 130 DEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 130 D~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
---|.|||..++.+...+...+ .++|+|
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G---~rVlli 71 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLN---LKVLMI 71 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred CCCCchHHHHHHHHHHHHHhCC---CeEEEE
Confidence 4679999999999887776543 346664
No 158
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=43.00 E-value=20 Score=25.94 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=17.5
Q ss_pred cCCCceEEEcCCCCchHHHHHHH
Q psy14604 121 GQNIDTILADEMGLGKTIQTITF 143 (209)
Q Consensus 121 ~~~~g~iLaD~mGLGKT~q~ia~ 143 (209)
......+|.-+.|.|||..+-++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 34556788999999999876544
No 159
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=42.28 E-value=31 Score=28.15 Aligned_cols=34 Identities=15% Similarity=0.057 Sum_probs=24.3
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
++--+||-|||-.+|..+...... ...+||+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~~---g~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEeec
Confidence 557789999999888876655433 2357888774
No 160
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=42.20 E-value=32 Score=28.63 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhcCCCc--eEEEcCCCCchHHHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQNID--TILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~g--~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
|...+..|......+.- .+|.-+.|.|||..+-++...+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 33444444443344432 67888999999999888876653
No 161
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=41.97 E-value=29 Score=28.48 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=27.5
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWE 170 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~ 170 (209)
...+.+|.-+.|.|||..+-++...+ ..+++.|....++..|.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~~~l~~~~~ 90 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMWF 90 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEhHHHHhhhc
Confidence 34567788899999999887765432 23455554445554453
No 162
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=41.48 E-value=33 Score=27.38 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=23.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
+|..---|.|||..++.+...+...+ .++|+|=
T Consensus 22 ~v~s~kGGvGKTT~a~nLA~~la~~G---~~VlliD 54 (262)
T 2ph1_A 22 AVMSGKGGVGKSTVTALLAVHYARQG---KKVGILD 54 (262)
T ss_dssp EEECSSSCTTHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 34556678999999999987776543 3466654
No 163
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=41.26 E-value=24 Score=28.88 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=20.9
Q ss_pred cCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 130 DEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 130 D~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
---|.|||..++.+...+...+ .++|+|
T Consensus 48 ~KGGvGKTT~a~nLA~~La~~G---~~Vlli 75 (307)
T 3end_A 48 GKGGIGKSTTSSNLSAAFSILG---KRVLQI 75 (307)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHCC---CeEEEE
Confidence 4678999999999888776653 346666
No 164
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=40.62 E-value=51 Score=29.23 Aligned_cols=40 Identities=3% Similarity=-0.213 Sum_probs=29.5
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
.+.-.+|+-..|.|||.-++.++..+.... ..++|++.-.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEecc
Confidence 344478899999999999999887765431 3468888764
No 165
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=40.46 E-value=25 Score=28.45 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=19.9
Q ss_pred CCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 131 EMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 131 ~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
--|.|||..++.+...+...+ .++|+|
T Consensus 10 KGGvGKTT~a~nLA~~La~~G---~rVlli 36 (289)
T 2afh_E 10 KGGIGKSTTTQNLVAALAEMG---KKVMIV 36 (289)
T ss_dssp CTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred CCcCcHHHHHHHHHHHHHHCC---CeEEEE
Confidence 568999999999988876543 246654
No 166
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=40.14 E-value=19 Score=30.55 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=26.8
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINW 169 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW 169 (209)
..+.+|.-+.|.|||..+-++...+ ..+++.|....+...|
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSLTSKW 157 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGGCCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHhhccc
Confidence 4467788899999999887775432 2356655555544433
No 167
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=39.10 E-value=33 Score=25.78 Aligned_cols=39 Identities=28% Similarity=0.432 Sum_probs=25.6
Q ss_pred EcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe--CcccHHHHH
Q psy14604 129 ADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA--PLSTIINWE 170 (209)
Q Consensus 129 aD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~--P~sl~~qW~ 170 (209)
.---|.|||..++.+...+...+ .++|+|- |..-+..|.
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g---~~vlliD~D~~~~~~~~~ 48 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSG---YNIAVVDTDPQMSLTNWS 48 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHH
T ss_pred eCCCCccHHHHHHHHHHHHHHCC---CeEEEEECCCCCCHHHHH
Confidence 34568999999999887776543 3466665 344445554
No 168
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=38.61 E-value=54 Score=25.76 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=17.8
Q ss_pred CceEEEcCCCCchHHHHHHHHHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~ 146 (209)
.+.+|.-++|.|||..+-++...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35678889999999887766543
No 169
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=38.58 E-value=93 Score=23.38 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=27.6
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIIN 168 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~q 168 (209)
.+.-.+|.-..|.|||.-+..++..+... .++++++.......+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~~~~~ 65 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEESRDS 65 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSSCHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcccCHHH
Confidence 33345677889999998887777555443 235676654433333
No 170
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=38.17 E-value=43 Score=27.66 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=23.2
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
|.+-..|-|||..++.+...+...+ .++|+|-
T Consensus 109 vts~kgG~GKTtva~nLA~~lA~~G---~rVLLID 140 (299)
T 3cio_A 109 ITGATPDSGKTFVSSTLAAVIAQSD---QKVLFID 140 (299)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHhCC---CcEEEEE
Confidence 4455679999999999887776543 3577774
No 171
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=37.61 E-value=41 Score=26.04 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=22.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
+|..---|.|||..++.+...+... ...++|+|=
T Consensus 8 ~v~s~kGGvGKTt~a~~LA~~la~~--~g~~VlliD 41 (245)
T 3ea0_A 8 GFVSAKGGDGGSCIAANFAFALSQE--PDIHVLAVD 41 (245)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTTS--TTCCEEEEE
T ss_pred EEECCCCCcchHHHHHHHHHHHHhC--cCCCEEEEE
Confidence 3445567999999999888777554 123466654
No 172
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=37.39 E-value=1.1e+02 Score=26.58 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=20.0
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
...+|.-+.|+|||..+-++...+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45788889999999988777655543
No 173
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=36.61 E-value=49 Score=27.03 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=16.0
Q ss_pred eEEEcCCCCchHHHHHHHHHH
Q psy14604 126 TILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~ 146 (209)
.+++.+.|.|||..+-++...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 355666999999998887644
No 174
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=36.49 E-value=56 Score=27.38 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=17.9
Q ss_pred CceEEEcCCCCchHHHHHHHHHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~ 146 (209)
.+.+|.-+.|.|||..+-++...
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45788889999999987766543
No 175
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=36.32 E-value=78 Score=26.71 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=23.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
.+..---|.|||..++++...+...+ .++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G---~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKG---LKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSS---CCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 45566779999999999887776553 2456554
No 176
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=36.28 E-value=33 Score=30.63 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
|+..+...+...+.-..+||+|. .+|.|||.+.+
T Consensus 121 y~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 121 YDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 44444344555566666899998 58999999984
No 177
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=36.13 E-value=1.4e+02 Score=24.91 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=19.8
Q ss_pred EcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 129 ADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 129 aD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
.-..|.|||-.+..+...+... .+.+|++.
T Consensus 111 vG~~G~GKTT~~~~LA~~l~~~---g~kVllid 140 (320)
T 1zu4_A 111 VGVNGTGKTTSLAKMANYYAEL---GYKVLIAA 140 (320)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 3459999998887776555433 34466664
No 178
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=35.92 E-value=76 Score=28.21 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHH
Q psy14604 107 AYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 107 ~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~ 146 (209)
.--..+|+.+... ..+....|.-..|.|||..+..+...
T Consensus 159 ~tGiraID~~~pi-~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 159 DLTARVLDLASPI-GRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHHHHHHHHSCC-BTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred cccceeeeeeeee-cCCcEEEEecCCCCChhHHHHHHHHH
Confidence 3344566655432 33444445555799999987554433
No 179
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=35.88 E-value=32 Score=27.78 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=18.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
..+|.-+.|.|||..+-++...+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 47788899999999988877654
No 180
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=35.38 E-value=51 Score=25.42 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=28.1
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe--CcccHHHHHH
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA--PLSTIINWER 171 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~--P~sl~~qW~~ 171 (209)
|..---|.|||..++.+...+...+ ++|+|- |..-+..|..
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g----~VlliD~D~q~~~~~~~~ 47 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG----ETLLIDGDPNRSATGWGK 47 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS----CEEEEEECTTCHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC----CEEEEECCCCCCHHHHhc
Confidence 4455568999999999987776542 467653 5555666765
No 181
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=35.33 E-value=70 Score=24.04 Aligned_cols=44 Identities=9% Similarity=-0.080 Sum_probs=27.8
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc--cHHHHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS--TIINWER 171 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s--l~~qW~~ 171 (209)
.+.-.+|.-..|.|||.-+..++. .. ..+++++.-.. -...|.+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~---~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LS---GKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HH---CSEEEEEESSCCCCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---Hc---CCcEEEEECCCCCCHHHHHH
Confidence 344467788899999998887766 22 23566665433 3344544
No 182
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=35.21 E-value=51 Score=26.06 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=20.7
Q ss_pred HHHHhhcCCCceEEEcCCCCchHHHHHHHH
Q psy14604 115 WLRYSWGQNIDTILADEMGLGKTIQTITFL 144 (209)
Q Consensus 115 ~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l 144 (209)
.+..........+|.-+.|.|||..+-++.
T Consensus 21 ~~~~~~~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 21 QVSHLAPLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp HHHHHTTSCSCEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEECCCCCcHHHHHHHHH
Confidence 333333455667888999999998776554
No 183
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=35.07 E-value=47 Score=28.13 Aligned_cols=45 Identities=9% Similarity=-0.111 Sum_probs=29.7
Q ss_pred chHHHHHHH-HHHHhhcCCC--ceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 106 HAYQLEGIN-WLRYSWGQNI--DTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 106 ~~~Q~~gv~-~l~~~~~~~~--g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
|.-|...+. +|......+. ..+|.-..|.|||.++-+++..+...
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 444555554 5544443333 34667899999999999998777543
No 184
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=35.02 E-value=31 Score=27.91 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=18.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
..+|.-+.|.|||..+-++...+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHHc
Confidence 357788999999998877765553
No 185
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=34.92 E-value=51 Score=27.46 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=23.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
.+..---|.|||..++++...+...+ .++|+|-
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~G---~rVLlvD 49 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARSG---KKTLVIS 49 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCC---CcEEEEe
Confidence 35556779999999999887776543 2355554
No 186
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=34.70 E-value=35 Score=29.54 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=20.8
Q ss_pred HHHHhhcCCCceEEEc-CCCCchHHHHHH
Q psy14604 115 WLRYSWGQNIDTILAD-EMGLGKTIQTIT 142 (209)
Q Consensus 115 ~l~~~~~~~~g~iLaD-~mGLGKT~q~ia 142 (209)
.+...+.-..+||+|. .+|.|||.+...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~G 124 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMMG 124 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeCC
Confidence 4445555666899988 689999998753
No 187
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=33.90 E-value=50 Score=26.83 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=22.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
|..-..|-|||..++.+...+...+ .++|+|
T Consensus 87 vts~kgG~GKTt~a~nLA~~lA~~G---~rVLLI 117 (271)
T 3bfv_A 87 ITSEAPGAGKSTIAANLAVAYAQAG---YKTLIV 117 (271)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC---CeEEEE
Confidence 3344579999999999887776543 346666
No 188
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=33.61 E-value=54 Score=26.98 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=23.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
+|.+-..|-|||..++.+...+...+ .++|+|
T Consensus 96 ~vts~kgG~GKTtva~nLA~~lA~~G---~rVLLI 127 (286)
T 3la6_A 96 MMTGVSPSIGMTFVCANLAAVISQTN---KRVLLI 127 (286)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTT---CCEEEE
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhCC---CCEEEE
Confidence 45566789999999998877775442 357777
No 189
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=33.15 E-value=46 Score=28.67 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 109 QLEGINWLRYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
+..+...+...+....+||+|. .+|.|||.+..
T Consensus 78 ~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 78 KCLGENILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 3333344455566666889987 78999999973
No 190
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=32.91 E-value=29 Score=29.50 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=19.7
Q ss_pred CCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 131 EMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 131 ~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
--|.|||..++.+...+...+ .++|+|
T Consensus 10 KGGvGKTT~a~nLA~~LA~~G---~rVLlI 36 (361)
T 3pg5_A 10 KGGVGKTTLSTNVAHYFALQG---KRVLYV 36 (361)
T ss_dssp SCCHHHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred CCCCcHHHHHHHHHHHHHhCC---CcEEEE
Confidence 347899999999887776532 347776
No 191
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=32.85 E-value=42 Score=28.97 Aligned_cols=34 Identities=26% Similarity=0.090 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
|+..+...+...+....++|+|. .+|.|||.+..
T Consensus 73 y~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 73 YRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 34333334445555566789988 68999999885
No 192
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=32.23 E-value=39 Score=29.38 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
|+..+-..+...+....++|+|. .+|.|||.+..
T Consensus 85 y~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 85 YSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHHHHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 33333334445556666889988 68999999875
No 193
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=31.66 E-value=88 Score=25.69 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=18.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHH
Q psy14604 126 TILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
.+|.-+.|.|||..+-++...+
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788899999999988886655
No 194
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=31.58 E-value=68 Score=27.41 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=27.0
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
.+.-.+|+-..|.|||.-++.++..+...+ .++++|..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g---~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeC
Confidence 333467888999999999999887765442 34666655
No 195
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=31.56 E-value=47 Score=26.93 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=26.1
Q ss_pred EEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe--C-cccHHHHHH
Q psy14604 128 LADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA--P-LSTIINWER 171 (209)
Q Consensus 128 LaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~--P-~sl~~qW~~ 171 (209)
.+---|.|||..++.+...+...+ .++|+|- | ..-+..|-.
T Consensus 10 ~s~KGGvGKTT~a~nLA~~La~~G---~~VlliD~D~~q~~l~~~l~ 53 (286)
T 2xj4_A 10 GNEKGGAGKSTIAVHLVTALLYGG---AKVAVIDLDLRQRTSARFFE 53 (286)
T ss_dssp CCSSSCTTHHHHHHHHHHHHHHTT---CCEEEEECCTTTCHHHHHHH
T ss_pred EcCCCCCCHHHHHHHHHHHHHHCC---CcEEEEECCCCCCCHHHHhC
Confidence 344568999999999988776543 3466654 3 233444543
No 196
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=31.43 E-value=75 Score=26.66 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=18.0
Q ss_pred CceEEEcCCCCchHHHHHHHHHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~ 146 (209)
...+|.-++|.|||..+-++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 35788889999999888766544
No 197
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=31.36 E-value=92 Score=25.70 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=28.1
Q ss_pred CchHHHHHHH-HHHHhhcCC--CceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 105 LHAYQLEGIN-WLRYSWGQN--IDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 105 L~~~Q~~gv~-~l~~~~~~~--~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
-+..+.+.+. ++....... ...+|.-..|.|||..+-++...+..
T Consensus 24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3555665554 443322222 24677888999999998887766543
No 198
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=31.34 E-value=39 Score=29.04 Aligned_cols=33 Identities=24% Similarity=0.120 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhcCCCceEEEc-CCCCchHHHH
Q psy14604 108 YQLEGINWLRYSWGQNIDTILAD-EMGLGKTIQT 140 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD-~mGLGKT~q~ 140 (209)
|+..+...+...+....++|+|. .+|.|||.+.
T Consensus 79 y~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 79 YQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 34333334455566667899987 6899999987
No 199
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=31.22 E-value=38 Score=26.90 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=22.5
Q ss_pred EEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 128 LADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 128 LaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
..---|.|||..++.+...+...+ .++|+|-
T Consensus 12 ~s~kGGvGKTt~a~~LA~~la~~g---~~VlliD 42 (257)
T 1wcv_1 12 ANQKGGVGKTTTAINLAAYLARLG---KRVLLVD 42 (257)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EeCCCCchHHHHHHHHHHHHHHCC---CCEEEEE
Confidence 344568999999999987776543 3577764
No 200
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=31.06 E-value=44 Score=28.40 Aligned_cols=35 Identities=20% Similarity=0.061 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhcCCCceEEEc-CCCCchHHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNIDTILAD-EMGLGKTIQTIT 142 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD-~mGLGKT~q~ia 142 (209)
|+..+-..+...+....++|+|. .+|.|||.+...
T Consensus 62 y~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G 97 (325)
T 1bg2_A 62 YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97 (325)
T ss_dssp HHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecc
Confidence 33333334445556666789988 589999999863
No 201
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=30.78 E-value=44 Score=28.85 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
|+..+-..+...+.-..+||+|. .+|.|||.+..
T Consensus 88 y~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 88 YETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp HHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCCCceEec
Confidence 44433334455566666889987 68999999974
No 202
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=30.72 E-value=27 Score=31.54 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=21.2
Q ss_pred HHhhcCCCceEEEcCCCCchHHHHHHHHH
Q psy14604 117 RYSWGQNIDTILADEMGLGKTIQTITFLY 145 (209)
Q Consensus 117 ~~~~~~~~g~iLaD~mGLGKT~q~ia~l~ 145 (209)
......+...+|..+.|.|||..+-++..
T Consensus 35 ~~al~~~~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 35 LLAALSGESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp HHHHHHTCEEEEECCSSSSHHHHHHHGGG
T ss_pred HHHHhcCCeeEeecCchHHHHHHHHHHHH
Confidence 33334566788899999999998766643
No 203
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=30.62 E-value=38 Score=28.97 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=17.3
Q ss_pred EEEcCCCCchHHHHHHHHHHHHh
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|..---|.|||..++.+...+..
T Consensus 113 v~s~KGGvGKTT~a~nLA~~La~ 135 (398)
T 3ez2_A 113 ISNLKGGVSKTVSTVSLAHAMRA 135 (398)
T ss_dssp ECCSSSSSSHHHHHHHHHHHHHH
T ss_pred EEeCCCCccHHHHHHHHHHHHHh
Confidence 33445689999999998877753
No 204
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=30.62 E-value=72 Score=29.50 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=29.4
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHhhCCCCC-cEEEEeCcc
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFKEGHCKG-PFLVSAPLS 164 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~-~~LIV~P~s 164 (209)
...+++-.+|.|||+..-++|.++........ .++||=|..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 45788999999999999999988876533222 355565654
No 205
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=30.60 E-value=37 Score=28.18 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=18.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~ 146 (209)
+.+|.-..|.|||.-+.|++..
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4677889999999999988764
No 206
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=30.26 E-value=46 Score=28.85 Aligned_cols=34 Identities=21% Similarity=0.100 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
|+..+...+...+....++|+|. .+|.|||.+..
T Consensus 69 y~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 69 YNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp HHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEe
Confidence 34333334445556666889988 58999999974
No 207
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=30.13 E-value=64 Score=26.50 Aligned_cols=26 Identities=27% Similarity=0.204 Sum_probs=20.0
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
....+|.-..|.|||..+-++...+.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 33567788999999998887776553
No 208
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=30.01 E-value=32 Score=30.79 Aligned_cols=42 Identities=17% Similarity=0.118 Sum_probs=31.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc-ccHHHHHHHHHH
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL-STIINWEREFET 175 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~-sl~~qW~~E~~~ 175 (209)
.++.-..|.|||-....++. . .+.||++|. .+...|.+.+.+
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~----~----~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN----F----EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC----T----TTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHhc----c----CCeEEEeCCHHHHHHHHHHhhh
Confidence 45677889999997766542 1 357999995 556779999864
No 209
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=29.66 E-value=1.4e+02 Score=24.37 Aligned_cols=37 Identities=11% Similarity=0.247 Sum_probs=23.4
Q ss_pred cCCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 121 GQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 121 ~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
......+|.-+.|.|||..+-++.... .....|++.|
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~---~~~~~~~v~v 59 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS---ARSDRPLVTL 59 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS---SCSSSCCCEE
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC---cccCCCeEEE
Confidence 445567888999999998776554321 1223456555
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=29.57 E-value=46 Score=29.83 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=18.4
Q ss_pred CCCceEEEcCCCCchHHHHHHHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLY 145 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~ 145 (209)
...+.+|--+.|.|||..+-++..
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHH
Confidence 344678888999999998877643
No 211
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=29.52 E-value=42 Score=29.04 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
|+..+...+...+....++|+|. .+|.|||.+..
T Consensus 74 y~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 74 YRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 44433334445555666889988 58999999874
No 212
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=29.43 E-value=48 Score=28.34 Aligned_cols=34 Identities=26% Similarity=0.137 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
|+..+...+...+.-..++|+|. .+|.|||.+..
T Consensus 68 y~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 102 (344)
T 4a14_A 68 YQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102 (344)
T ss_dssp HHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHC
T ss_pred HHHHHHHHHHHHHhhcCeeEEEecccCCCceEeec
Confidence 34333334455556666889987 68999999863
No 213
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=29.15 E-value=39 Score=29.91 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=20.4
Q ss_pred HHHHhhcCCCceEEEc-CCCCchHHHHHH
Q psy14604 115 WLRYSWGQNIDTILAD-EMGLGKTIQTIT 142 (209)
Q Consensus 115 ~l~~~~~~~~g~iLaD-~mGLGKT~q~ia 142 (209)
.+...+....++|+|. .+|.|||.+...
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHHC
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEeec
Confidence 3344455556789988 689999999764
No 214
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=29.07 E-value=49 Score=28.77 Aligned_cols=35 Identities=23% Similarity=0.082 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhcCCCceEEEc-CCCCchHHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNIDTILAD-EMGLGKTIQTIT 142 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD-~mGLGKT~q~ia 142 (209)
|+..+-..+...+....++|+|. .+|.|||.+...
T Consensus 86 y~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G 121 (372)
T 3b6u_A 86 YDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEG 121 (372)
T ss_dssp HHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred HHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEec
Confidence 33333334445555666889988 689999998743
No 215
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=28.97 E-value=37 Score=29.26 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=20.1
Q ss_pred HHHHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 115 WLRYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 115 ~l~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
.+...+....++|+|. .+|.|||.+..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 3444555666789988 68999999985
No 216
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=28.93 E-value=84 Score=28.00 Aligned_cols=40 Identities=18% Similarity=0.055 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHH
Q psy14604 107 AYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 107 ~~Q~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
.--..+|+.|.-+-.-+..+|+++ .|.|||..+..++..+
T Consensus 160 ~tGiraID~l~PigrGQR~lIfg~-~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 160 IYSTRLIDLFAPIGKGQRGMIVAP-PKAGKTTILKEIANGI 199 (427)
T ss_dssp CHHHHHHHHHSCCBTTCEEEEEEC-TTCCHHHHHHHHHHHH
T ss_pred hccchhhhhcccccCCceEEEecC-CCCChhHHHHHHHHHH
Confidence 344566666643333333455555 6999999886555444
No 217
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=28.89 E-value=50 Score=28.46 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcCCCceEEEc-CCCCchHHHHHH
Q psy14604 108 YQLEGINWLRYSWGQNIDTILAD-EMGLGKTIQTIT 142 (209)
Q Consensus 108 ~Q~~gv~~l~~~~~~~~g~iLaD-~mGLGKT~q~ia 142 (209)
|+..+...+...+....++|+|. .+|.|||.+...
T Consensus 65 y~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G 100 (355)
T 1goj_A 65 FDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMG 100 (355)
T ss_dssp HHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeec
Confidence 44333334445555566789987 589999998754
No 218
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=28.83 E-value=68 Score=26.78 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=23.2
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
.|..---|.|||..+.++...+...+ ..+|+|
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~G---~rVllv 53 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKVR---SSVLLI 53 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTSS---SCEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC---CeEEEE
Confidence 45566789999999999887776543 346665
No 219
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=28.79 E-value=1e+02 Score=26.13 Aligned_cols=36 Identities=14% Similarity=0.004 Sum_probs=24.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCc
Q psy14604 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPL 163 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~ 163 (209)
-.+|.-..|.|||.-++.++..+...+ +++++|.-.
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g---~~vlyi~~E 98 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAG---GIAAFIDAE 98 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECC
Confidence 357788899999999998887665432 345555443
No 220
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=28.65 E-value=42 Score=28.94 Aligned_cols=27 Identities=33% Similarity=0.246 Sum_probs=20.1
Q ss_pred HHHHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 115 WLRYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 115 ~l~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
.+...+....++|+|. .+|.|||.+..
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 4445555666889987 68999999874
No 221
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=28.63 E-value=68 Score=25.63 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=18.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
..+|.-+.|.|||..+-++...+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 46888899999999888887655
No 222
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=28.59 E-value=74 Score=25.54 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=19.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
+-++.-..|.|||..+.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45668899999999998887665
No 223
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=28.33 E-value=23 Score=34.10 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=29.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWE 170 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~ 170 (209)
..|.+|.-..|.|||+.+-++...+ ..+++.|....++..|.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMWF 552 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHHHTTTC
T ss_pred CceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchhhcccc
Confidence 3467889999999998887665432 34566666667777674
No 224
>1wx1_A Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; structural genomics; 1.97A {Thermus thermophilus HB8} PDB: 1j33_A
Probab=28.32 E-value=69 Score=27.53 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 112 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 112 gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|..+.......+...|+.-|||.|=|-++.+++..+..
T Consensus 143 G~~~a~~~~~~g~~ll~~GEmGiGnTTtAaAv~~aL~G 180 (335)
T 1wx1_A 143 GREAARRAIAEGATLLAAGDMGIGNTTAAAALTAALLG 180 (335)
T ss_dssp HHHHHHHHHHTTCSEEEEEEECTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCEEEEeccccCccHHHHHHHHHHhC
Confidence 34444444556778899999999999999999988854
No 225
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=28.25 E-value=47 Score=28.69 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=22.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGH 152 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~ 152 (209)
.+.+.++..|||.+++++...+...+.
T Consensus 156 ~v~GTD~~VGK~~ts~~L~~~l~~~G~ 182 (349)
T 2obn_A 156 LTVGTDMAIGKMSTSLELHWAAKLRGW 182 (349)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHHTTC
T ss_pred EEcCCCccccceeHHHHHHHHHHhcCC
Confidence 477899999999999999888776653
No 226
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=28.16 E-value=96 Score=25.86 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=19.2
Q ss_pred EEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 128 LADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 128 LaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
+.-..|.|||-.+..+...+... .+.++++.
T Consensus 109 ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~ 139 (306)
T 1vma_A 109 VVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAA 139 (306)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEcCCCChHHHHHHHHHHHHHhc---CCEEEEEc
Confidence 33469999998877766555433 23455554
No 227
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=28.00 E-value=51 Score=26.09 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=21.6
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEE
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVS 160 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV 160 (209)
|..---|.|||..++.+...+. .+ .++|+|
T Consensus 32 v~s~kGGvGKTT~a~~LA~~la-~g---~~Vlli 61 (267)
T 3k9g_A 32 IASIKGGVGKSTSAIILATLLS-KN---NKVLLI 61 (267)
T ss_dssp ECCSSSSSCHHHHHHHHHHHHT-TT---SCEEEE
T ss_pred EEeCCCCchHHHHHHHHHHHHH-CC---CCEEEE
Confidence 4455668999999999987776 32 346666
No 228
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=27.41 E-value=46 Score=28.67 Aligned_cols=27 Identities=26% Similarity=0.134 Sum_probs=19.8
Q ss_pred HHHHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 115 WLRYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 115 ~l~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
.+...+....++|+|. .+|.|||.+..
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEee
Confidence 3444555666889988 58999999874
No 229
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=27.38 E-value=2.1e+02 Score=22.62 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=35.2
Q ss_pred ceEEEcCC-CCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhCCCceEEE
Q psy14604 125 DTILADEM-GLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVT 184 (209)
Q Consensus 125 g~iLaD~m-GLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~~l~v~~ 184 (209)
..||.|+| ..|.|+ ++++..+.. +.. ..+.++|+...-. =.+.+...+|++.+++
T Consensus 135 ~VilvDp~laTG~T~--~~ai~~L~~-G~p-~~I~~~~~vaa~~-gl~~l~~~~P~v~I~t 190 (216)
T 1xtt_A 135 NVIIADPMIATASTM--LKVLEEVVK-ANP-KRIYIVSIISSEY-GVNKILSKYPFIYLFT 190 (216)
T ss_dssp EEEEECSEESSSHHH--HHHHHHHGG-GCC-SEEEEECSEEEHH-HHHHHHHHCTTSEEEE
T ss_pred eEEEEcCCccchHHH--HHHHHHHHh-CCC-CeEEEEEEecCHH-HHHHHHHHCCCcEEEE
Confidence 68888887 468877 555666666 533 4577777754433 3445666678876655
No 230
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=27.24 E-value=66 Score=28.34 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=20.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
....+|.-+.|.|||..+-++...+.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 34578889999999999888776653
No 231
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=27.14 E-value=47 Score=26.47 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=17.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~ 146 (209)
+.+|.-+.|.|||..+-++...
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4677889999999988877654
No 232
>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*
Probab=26.62 E-value=1.7e+02 Score=26.23 Aligned_cols=64 Identities=8% Similarity=0.008 Sum_probs=35.2
Q ss_pred ceEEEcCCCCch---------H-HH-HHHHHHHHHhhCCCCCcEEEEeCcccHHHH----------HHHHHHhCCCceEE
Q psy14604 125 DTILADEMGLGK---------T-IQ-TITFLYSLFKEGHCKGPFLVSAPLSTIINW----------EREFETWAPDFYVV 183 (209)
Q Consensus 125 g~iLaD~mGLGK---------T-~q-~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW----------~~E~~~~~~~l~v~ 183 (209)
-+||+||++-.= + .. .+.++..+...- .....|++||..=...| .++|.+-++.--.+
T Consensus 110 FaIlfDDI~~~~~~~d~~~f~s~a~aQ~~l~N~v~~~l-~~~~~l~~cPt~Y~~~~~~~~~~~s~Yl~~l~~~Ld~~I~V 188 (447)
T 2xsa_A 110 LVLLFDDIPSVLPEADRHRFDSFAEAQADLSNMVLRHL-RGAGHVVFCPTEYCGRMAGGDPRGSAYLQRLGSTLDPAIDI 188 (447)
T ss_dssp EEEECSSCCSSCCTTTTTTCSSHHHHHHHHHHHHHHHT-TTSSEEEEECSSCSHHHHTSSGGGCHHHHHHHHHSCTTSEE
T ss_pred EEEeccCCCCccchhhhhhhhhHHHHHHHHHHHHHHHh-CCCCceEEeChhhcCCcccCCCCCcHHHHHHHhhCCCCCeE
Confidence 489999998641 0 11 123333333332 22237999998777666 34443434444455
Q ss_pred EEEcCh
Q psy14604 184 TYVGDK 189 (209)
Q Consensus 184 ~y~G~~ 189 (209)
.++|+.
T Consensus 189 ~WTG~~ 194 (447)
T 2xsa_A 189 FWTGPE 194 (447)
T ss_dssp EECCSS
T ss_pred EecCCc
Confidence 667774
No 233
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=26.62 E-value=41 Score=29.15 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=21.7
Q ss_pred CCCCchHHHHHHHHHHHHhhCCCCCcEEEE-eCcccHHH
Q psy14604 131 EMGLGKTIQTITFLYSLFKEGHCKGPFLVS-APLSTIIN 168 (209)
Q Consensus 131 ~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV-~P~sl~~q 168 (209)
--|.|||..++++...+...+ . .+|+| ||..-+.+
T Consensus 10 kGG~GKTt~a~~la~~la~~g--~-~vllvd~~~~~l~~ 45 (374)
T 3igf_A 10 KSGVARTKIAIAAAKLLASQG--K-RVLLAGLAEPVLPL 45 (374)
T ss_dssp SBHHHHHHHHHHHHHHHHHTT--C-CEEEEECSCSHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHCC--C-CeEEEeCCCCChHH
Confidence 347899999988877776553 2 34444 44443433
No 234
>4hdr_B ARSB; transferase; HET: DMD; 1.45A {Sporomusa ovata} PDB: 4hdm_B 4hdn_B 4hdk_B* 4hds_B
Probab=26.59 E-value=76 Score=27.49 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=27.2
Q ss_pred HHhhcCCCceEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 117 RYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 117 ~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
......+...|..-|||.|-|..+.++++.+...
T Consensus 157 ~~~~~~G~~ll~~GEMGIGNTT~AaAl~aal~g~ 190 (350)
T 4hdr_B 157 QAEIARGCQVIGLGEMGLGGLAAAMAIVACCHGQ 190 (350)
T ss_dssp HHHHHTTCSEEEEEEESTTHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCCEEEecccCCCcchHHHHHHHHhcCC
Confidence 3445577788999999999999999988877543
No 235
>4hdr_A ARSA; transferase; HET: DMD; 1.45A {Sporomusa ovata} PDB: 4hdm_A 4hdn_A 4hdk_A* 4hds_A
Probab=26.45 E-value=66 Score=27.86 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=27.9
Q ss_pred HHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 113 INWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 113 v~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
+.........+...|..-|||.|-|..+.++++.+..
T Consensus 160 ~~~a~~~~~~G~~ll~~GEMGIGNTT~AaAl~aal~g 196 (348)
T 4hdr_A 160 IDIVNDRVKHGNRCFCLGEMGIGNTTSSATIVGAFTG 196 (348)
T ss_dssp HHHHHHHHHTTEEEEEEEEECTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEecccCCCcHHHHHHHHHHHhC
Confidence 3333444456677888999999999999999887754
No 236
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=26.45 E-value=1.4e+02 Score=27.13 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 110 LEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 110 ~~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
..+|+-|.-+-.-+..+|+|+ -|.|||..++..|.....
T Consensus 150 iraID~l~PigrGQR~~I~g~-~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 150 IKAVDSLVPIGRGQRELIIGD-RQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CHHHHHHSCCBTTCBCEEEES-TTSSHHHHHHHHHHHTHH
T ss_pred ceeeccccccccCCEEEEecC-CCCCchHHHHHHHHHHHh
Confidence 356666643333333456665 699999998877766544
No 237
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=26.45 E-value=49 Score=28.22 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=16.9
Q ss_pred EEEcCCCCchHHHHHHHHHHHH
Q psy14604 127 ILADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~ 148 (209)
++.---|.|||..++++...+.
T Consensus 22 ~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 22 FVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp EEECSTTSSHHHHHHHHHHHHH
T ss_pred EEeCCCCCcHHHHHHHHHHHHH
Confidence 4444668999999998877775
No 238
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=26.37 E-value=1.2e+02 Score=26.60 Aligned_cols=32 Identities=22% Similarity=0.136 Sum_probs=21.1
Q ss_pred EEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 128 LADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 128 LaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
+.-..|.|||..+..+...+... .+.++++.-
T Consensus 103 i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~ 134 (425)
T 2ffh_A 103 LVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (425)
T ss_dssp EECCTTSSHHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHHHc---CCeEEEeec
Confidence 34568999999887776665433 344666653
No 239
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=25.51 E-value=79 Score=28.57 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=23.2
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
.++.---|.|||..++++...+...+ .++|+|-
T Consensus 11 ~~~sgkGGvGKTT~a~~lA~~lA~~G---~rVLlvd 43 (589)
T 1ihu_A 11 LFFTGKGGVGKTSISCATAIRLAEQG---KRVLLVS 43 (589)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEEeCCCcCHHHHHHHHHHHHHHHCC---CcEEEEE
Confidence 34555678999999999988776553 2466543
No 240
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=25.42 E-value=2e+02 Score=25.90 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=22.3
Q ss_pred EEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeC
Q psy14604 128 LADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162 (209)
Q Consensus 128 LaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P 162 (209)
++--.|.|||-.+..++..+...+ ..++||+.
T Consensus 106 ivG~~GvGKTTl~~kLA~~l~~~G---~kVllVd~ 137 (504)
T 2j37_W 106 FVGLQGSGKTTTCSKLAYYYQRKG---WKTCLICA 137 (504)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHhCC---CeEEEEec
Confidence 344579999999988887776542 34666665
No 241
>1l5o_A COBT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, NN:DBI PRT; cobalamin synthetic enzyme; HET: NCN; 1.60A {Salmonella enterica} SCOP: c.39.1.1 PDB: 1jha_A* 1jhm_A* 1jho_A* 1jhp_A* 1jhq_A* 1jhr_A* 1jhu_A 1jhv_A 1jhx_A 1jhy_A 1jh8_A 1l4e_A* 1l4f_A* 1l4g_A* 1l4h_A* 1l4k_A* 1l4l_A* 1l4m_A* 1l4n_A 1l5f_A ...
Probab=25.31 E-value=75 Score=27.56 Aligned_cols=38 Identities=8% Similarity=0.048 Sum_probs=28.6
Q ss_pred HHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 112 GINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 112 gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
|..+.......+...|+.-|||.|=|-++.+++..+..
T Consensus 155 G~~~~~~~~~~g~~lL~~GEmGiGnTTtAaAv~~aL~G 192 (356)
T 1l5o_A 155 VSRYTCDLAQRGVTLFGVGELGMANTTPAAAMVSVFTG 192 (356)
T ss_dssp HHHHHHHHHTTTEEEEEEEEECTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCEEEEeccccCccHHHHHHHHHHhC
Confidence 34444444456667888899999999999999988854
No 242
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=24.71 E-value=1.8e+02 Score=25.88 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHhhCCCCCcEEEEeCcc-cHHHHHHHHHHhCC-CceEEEEEcChh
Q psy14604 136 KTIQTITFLYSLFKEGHCKGPFLVSAPLS-TIINWEREFETWAP-DFYVVTYVGDKD 190 (209)
Q Consensus 136 KT~q~ia~l~~~~~~~~~~~~~LIV~P~s-l~~qW~~E~~~~~~-~l~v~~y~G~~~ 190 (209)
+....+..+...........++||.|+.. .+......|...++ .+.+..|||...
T Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~ 326 (579)
T 3sqw_A 270 SIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKIT 326 (579)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSC
T ss_pred hHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 33344455554444434456799999964 45557777776654 789999999843
No 243
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.65 E-value=77 Score=27.72 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=19.1
Q ss_pred HHHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 116 LRYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 116 l~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
+...+....+||+|. .+|.|||.+..
T Consensus 133 v~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 133 VQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHhCCcceEEEEECCCCCCCceEeC
Confidence 344445555789987 68999999974
No 244
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=24.63 E-value=1e+02 Score=24.80 Aligned_cols=24 Identities=29% Similarity=0.265 Sum_probs=19.0
Q ss_pred CceEEEcCCCCchHHHHHHHHHHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
...+|.-+.|.|||..+-++...+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 467888999999999887775443
No 245
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=24.61 E-value=38 Score=26.82 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=19.4
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
..+.+|.-+.|.|||..+-++...+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4467788899999999888776543
No 246
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=24.60 E-value=1.2e+02 Score=27.47 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=24.7
Q ss_pred HHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHH
Q psy14604 111 EGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 111 ~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~ 146 (209)
..+.-+......+...+|.-+.|.|||..+-++...
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 344444444456677888999999999877666543
No 247
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=24.02 E-value=39 Score=29.66 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=19.2
Q ss_pred HHHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 116 LRYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 116 l~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
+...+....++|+|. .+|.|||.+..
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEee
Confidence 344455566789988 58999999874
No 248
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=23.80 E-value=88 Score=26.51 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=22.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHHH--hhCCCCCcEEEEe
Q psy14604 126 TILADEMGLGKTIQTITFLYSLF--KEGHCKGPFLVSA 161 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~--~~~~~~~~~LIV~ 161 (209)
.|..---|.|||..++++...+. ..+ .++|+|-
T Consensus 21 ~v~sgKGGvGKTTvaanLA~~lA~~~~G---~rVLLvD 55 (354)
T 2woj_A 21 IFVGGKGGVGKTTSSCSIAIQMALSQPN---KQFLLIS 55 (354)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTT---SCEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhcCC---CeEEEEE
Confidence 44555678999999999887776 432 3456554
No 249
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=23.74 E-value=1.2e+02 Score=27.36 Aligned_cols=42 Identities=14% Similarity=0.285 Sum_probs=28.3
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHHHhhCCCCC-cEEEEeCcc
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYSLFKEGHCKG-PFLVSAPLS 164 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~-~~LIV~P~s 164 (209)
....+++-.+|.|||...-+++.++........ .+++|=|..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 445788999999999999888887765433222 244444443
No 250
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=23.25 E-value=1.4e+02 Score=24.30 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=17.9
Q ss_pred CceEEEcCCCCchHHHHHHHHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLY 145 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~ 145 (209)
...+|.-+.|.|||..+-++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3578889999999998877743
No 251
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.15 E-value=1e+02 Score=27.35 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=19.0
Q ss_pred CceEEEcCCCCchHHHHHHHHHHH
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
...+|.-+.|.|||..+-++...+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 457888899999999888776443
No 252
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=23.12 E-value=94 Score=26.30 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=24.2
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
+|..---|.|||..++.+...+...+ .++|+|-
T Consensus 147 av~s~KGGvGKTT~a~nLA~~La~~g---~rVlliD 179 (373)
T 3fkq_A 147 IFTSPCGGVGTSTVAAACAIAHANMG---KKVFYLN 179 (373)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHHT---CCEEEEE
T ss_pred EEECCCCCChHHHHHHHHHHHHHhCC---CCEEEEE
Confidence 34555678999999999987776653 3577775
No 253
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=22.95 E-value=55 Score=28.64 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=19.8
Q ss_pred HHHHhhcCCCceEEEc-CCCCchHHHHHH
Q psy14604 115 WLRYSWGQNIDTILAD-EMGLGKTIQTIT 142 (209)
Q Consensus 115 ~l~~~~~~~~g~iLaD-~mGLGKT~q~ia 142 (209)
.+...+.-..++|+|. .+|.|||.+...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 3344455556789988 689999999765
No 254
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=22.91 E-value=93 Score=26.70 Aligned_cols=38 Identities=16% Similarity=0.324 Sum_probs=26.0
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcc
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLS 164 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~s 164 (209)
...++.-.+|.|||..+-.++..+...+ .+++|+-|..
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g---~~viv~Dpkg 91 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRG---DRMVIVDPNG 91 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTT---CEEEEEEETT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC---CcEEEEeCCC
Confidence 3466777899999998655665555432 4578888854
No 255
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=22.51 E-value=1.6e+02 Score=24.16 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=18.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHHH
Q psy14604 125 DTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 125 g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
..+|.-..|.|||..+-+++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46778899999999887776554
No 256
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=22.49 E-value=1.1e+02 Score=26.88 Aligned_cols=31 Identities=26% Similarity=0.138 Sum_probs=22.3
Q ss_pred EcCCCCchHHHHHHHHHHHHhh-CCCCCcEEEEeC
Q psy14604 129 ADEMGLGKTIQTITFLYSLFKE-GHCKGPFLVSAP 162 (209)
Q Consensus 129 aD~mGLGKT~q~ia~l~~~~~~-~~~~~~~LIV~P 162 (209)
+--.|.|||.++..+.+.+... + ..+|+|.-
T Consensus 106 vG~~GvGKTT~a~~LA~~l~~~~G---~kVllvd~ 137 (433)
T 2xxa_A 106 AGLQGAGKTTSVGKLGKFLREKHK---KKVLVVSA 137 (433)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTSC---CCEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcC---CeEEEEec
Confidence 4468999999999998877654 3 34666554
No 257
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=22.48 E-value=70 Score=27.57 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=22.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhhCC
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKEGH 152 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~~~ 152 (209)
.+.+.+++.|||.++.++...+...+.
T Consensus 173 ~v~GTDt~vGKt~t~~~L~~~l~~~G~ 199 (350)
T 2g0t_A 173 GVFGTDCVVGKRTTAVQLWERALEKGI 199 (350)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHHTTC
T ss_pred EEecCCCCccCccHHHHHHHHHHhcCC
Confidence 467889999999999999877776643
No 258
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=22.46 E-value=59 Score=26.10 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=18.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHH
Q psy14604 123 NIDTILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 123 ~~g~iLaD~mGLGKT~q~ia~l~~ 146 (209)
..+.+|.-+.|.|||..+-++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446778889999999988776543
No 259
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=22.43 E-value=81 Score=27.00 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=18.5
Q ss_pred HHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 117 RYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 117 ~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
...+.-..++|+|. .+|.|||.+.+
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 78 QSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp GGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHhcCCceeEEEEECCCCCCCcEecc
Confidence 34445555789988 57999999875
No 260
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=22.19 E-value=1.6e+02 Score=23.46 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=18.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHH
Q psy14604 126 TILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
.+|.-+.|.|||..+-++...+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7888899999999888776654
No 261
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=21.76 E-value=1.7e+02 Score=24.10 Aligned_cols=38 Identities=5% Similarity=-0.089 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhcCCC--ceEEEcCCCCchHHHHHHHHHH
Q psy14604 109 QLEGINWLRYSWGQNI--DTILADEMGLGKTIQTITFLYS 146 (209)
Q Consensus 109 Q~~gv~~l~~~~~~~~--g~iLaD~mGLGKT~q~ia~l~~ 146 (209)
|.+.+..|......+. ..+|.-+.|.|||..+.++...
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4445555544444443 5688899999999988887654
No 262
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=21.66 E-value=98 Score=26.13 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=21.6
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEe
Q psy14604 127 ILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSA 161 (209)
Q Consensus 127 iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~ 161 (209)
++.---|.|||..++++...+...+ ..+|+|-
T Consensus 20 ~~sgkGGvGKTt~a~~lA~~la~~g---~~vllid 51 (334)
T 3iqw_A 20 FVGGKGGVGKTTTSCSLAIQLAKVR---RSVLLLS 51 (334)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTTSS---SCEEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHhCC---CcEEEEE
Confidence 4455678999999998877775432 2355554
No 263
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=21.60 E-value=83 Score=27.32 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=20.2
Q ss_pred HHHHhhcCCCceEEEc-CCCCchHHHHHH
Q psy14604 115 WLRYSWGQNIDTILAD-EMGLGKTIQTIT 142 (209)
Q Consensus 115 ~l~~~~~~~~g~iLaD-~mGLGKT~q~ia 142 (209)
.+...+.-..++|+|. .+|.|||.+...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM~G 135 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTMEG 135 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEeec
Confidence 3344455556789988 689999998853
No 264
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=21.58 E-value=1.8e+02 Score=24.53 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=30.7
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHH
Q psy14604 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWERE 172 (209)
Q Consensus 122 ~~~g~iLaD~mGLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E 172 (209)
.+...++.-.+|.|||..+-.++..+... ...++|+=|..-...+.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~ 81 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ---GSRVIIIDPEREYKEMCRK 81 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEESSCCSHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC---CCEEEEEeCCcCHHHHHHH
Confidence 34456777789999998877666555433 3457777776544444333
No 265
>3u4g_A NAMN:DMB phosphoribosyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.90A {Pyrococcus horikoshii}
Probab=21.50 E-value=94 Score=26.74 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcCCCceEEEcCCCCchHHHHHHHHHHH
Q psy14604 111 EGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSL 147 (209)
Q Consensus 111 ~gv~~l~~~~~~~~g~iLaD~mGLGKT~q~ia~l~~~ 147 (209)
.|..+.... ..+...|+.-|||.|=|-++.++++.+
T Consensus 123 ~G~~~~~~l-~~~~dll~~GEmGIGNTTtAaAvl~aL 158 (337)
T 3u4g_A 123 RAKLLGKEL-EKIANEIVIGESTPGGTTTAQAILWAL 158 (337)
T ss_dssp HHHHHHHHH-TTTBSEEEEEEECTTHHHHHHHHHHHT
T ss_pred HHHHHHHHH-hcCCCEEEEeCcchHHHHHHHHHHHHh
Confidence 344454433 345577888999999999999998886
No 266
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=21.48 E-value=3e+02 Score=21.74 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=35.9
Q ss_pred CCceEEEcCC-CCchHHHHHHHHHHHHhhCCCCCcEEEEeCcccHHHHHHHHHHhCCCceEEE
Q psy14604 123 NIDTILADEM-GLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVT 184 (209)
Q Consensus 123 ~~g~iLaD~m-GLGKT~q~ia~l~~~~~~~~~~~~~LIV~P~sl~~qW~~E~~~~~~~l~v~~ 184 (209)
+...||.|+| ..|.|+ ++++..+...+.....+.++|.... ..=.+.+...+|++.+++
T Consensus 129 ~~~VilvD~~laTG~T~--~~ai~~L~~~G~pe~~I~~~~~vaa-~egl~~l~~~~P~v~i~t 188 (217)
T 3dmp_A 129 DRIFILCDPMVATGYSA--AHAIDVLKRRGVPGERLMFLALVAA-PEGVQVFQDAHPDVKLYV 188 (217)
T ss_dssp TCEEEEECSEESSSHHH--HHHHHHHHTTTCCGGGEEEECSEEC-HHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCcccccHHH--HHHHHHHHHcCCCcCeEEEEEEEeC-HHHHHHHHHHCCCCEEEE
Confidence 4468888885 689987 4455555555432144677776443 333456666678876554
No 267
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=21.11 E-value=37 Score=29.14 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=9.1
Q ss_pred EcCCCCchHHHHHHHHHHHH
Q psy14604 129 ADEMGLGKTIQTITFLYSLF 148 (209)
Q Consensus 129 aD~mGLGKT~q~ia~l~~~~ 148 (209)
.---|.|||..++.+...+.
T Consensus 118 s~KGGvGKTT~a~nLA~~LA 137 (403)
T 3ez9_A 118 NLKGGVSKTVSTVTLAHALR 137 (403)
T ss_dssp CC--------CHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHH
Confidence 34568999999999887775
No 268
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=20.91 E-value=65 Score=27.81 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=18.0
Q ss_pred HHHhhcCCC-ceEEEc-CCCCchHHHHHH
Q psy14604 116 LRYSWGQNI-DTILAD-EMGLGKTIQTIT 142 (209)
Q Consensus 116 l~~~~~~~~-g~iLaD-~mGLGKT~q~ia 142 (209)
+...+..+. ++|+|. .+|.|||.+...
T Consensus 76 v~~~~~~G~n~tifAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 76 IIDLYENGCVCSCFAYGQTGSGKTYTMLG 104 (360)
T ss_dssp HHHHHHHCCEEEEEEECCTTSSHHHHHHB
T ss_pred hhhhccCCceeEEEeeCCCCCCCCEEEec
Confidence 334444344 458887 689999998853
No 269
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=20.70 E-value=97 Score=26.49 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=18.9
Q ss_pred HHHhhcCCCceEEEc-CCCCchHHHHH
Q psy14604 116 LRYSWGQNIDTILAD-EMGLGKTIQTI 141 (209)
Q Consensus 116 l~~~~~~~~g~iLaD-~mGLGKT~q~i 141 (209)
+...+.-..+||+|. .+|.|||.+..
T Consensus 78 v~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 78 VQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 344444555789987 68999999884
No 270
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=20.38 E-value=49 Score=31.80 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHHHhh
Q psy14604 126 TILADEMGLGKTIQTITFLYSLFKE 150 (209)
Q Consensus 126 ~iLaD~mGLGKT~q~ia~l~~~~~~ 150 (209)
.|.+-+.|.|||+.+++++..+...
T Consensus 38 ~I~gt~s~vGKT~vt~gL~r~l~~~ 62 (831)
T 4a0g_A 38 LIWSANTSLGKTLVSTGIAASFLLQ 62 (831)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5778899999999999999888765
No 271
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=20.16 E-value=2.2e+02 Score=23.03 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=19.7
Q ss_pred CceEEEcCCCCchHHHHHHHHHHHHh
Q psy14604 124 IDTILADEMGLGKTIQTITFLYSLFK 149 (209)
Q Consensus 124 ~g~iLaD~mGLGKT~q~ia~l~~~~~ 149 (209)
...+|.-..|.|||..+-+++..+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34677888999999988877665543
Done!