RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14604
         (209 letters)



>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
           rerio) [TaxId: 7955]}
          Length = 298

 Score = 77.1 bits (188), Expect = 1e-17
 Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 19/148 (12%)

Query: 76  YTPPPEKPTTDLRKKYEKQP------PFLDDTGMQLHAYQLEGINWL-----RYSWGQNI 124
           Y PP       ++   EK P      P L      L  +Q EG+ +L           + 
Sbjct: 24  YEPPAISAHDLIKADKEKLPVHVVVDPVL---SKVLRPHQREGVKFLWDCVTGRRIENSY 80

Query: 125 DTILADEMGLGKTIQTITFLYSLFKEGHCKGP----FLVSAPLSTIINWEREFETWAPDF 180
             I+ADEMGLGKT+Q IT +++L K+     P     +V +P S + NW  E   W    
Sbjct: 81  GCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLG-G 139

Query: 181 YVVTYVGDKDCRIVLRDHDISWEDTANR 208
            V     D   +  +    +++      
Sbjct: 140 RVQPVAIDGGSKDEIDSKLVNFISQQGM 167


>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
           {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 230

 Score = 73.9 bits (180), Expect = 7e-17
 Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 94  QPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHC 153
           +P  +      L  YQ++G +W+R+         LAD+MGLGKT+QTI       KE   
Sbjct: 5   EPYNIKAN---LRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENEL 61

Query: 154 KGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDI 200
             P LV  PLS + NWE E   +AP      +  D   +I L D+DI
Sbjct: 62  T-PSLVICPLSVLKNWEEELSKFAPHLRFAVFHED-RSKIKLEDYDI 106


>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 206

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 17/111 (15%), Positives = 29/111 (26%), Gaps = 11/111 (9%)

Query: 75  RYTPPPEKPTTDLRKKYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGL 134
            Y         D        P F  D  + L  YQ + +      W  +    +    G 
Sbjct: 43  EYFESNGIEFVDNAADPIPTPYF--DAEISLRDYQEKALER----WLVDKRGCIVLPTGS 96

Query: 135 GKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTY 185
           GKT   +  +  L           V   L+    W+     +  ++     
Sbjct: 97  GKTHVAMAAINELSTPTLI-----VVPTLALAEQWKERLGIFGEEYVGEFS 142


>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
           PF2015 {Pyrococcus furiosus [TaxId: 2261]}
          Length = 200

 Score = 28.6 bits (62), Expect = 0.40
 Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 5/79 (6%)

Query: 103 MQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAP 162
           +Q   YQ       + +     + ++    GLGKT+  +        +   K   L    
Sbjct: 8   IQPRIYQEVIYAKCKET-----NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTK 62

Query: 163 LSTIINWEREFETWAPDFY 181
              + + E     +     
Sbjct: 63  PLVLQHAESFRRLFNLPPE 81


>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 395

 Score = 27.4 bits (59), Expect = 1.4
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 179 DFYVVTYVGDKDCRIVLRDHDISWEDTANRG 209
           + ++V+      C  VL D   S ++TA  G
Sbjct: 40  EAWLVS--SYALCTQVLEDRRFSMKETAAAG 68


>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
           type 2 [TaxId: 11060]}
          Length = 305

 Score = 26.0 bits (56), Expect = 4.0
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 8/51 (15%)

Query: 114 NWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPF-LVSAPL 163
           +  R    +   TI+    G GKT +   +L ++ +E   +G   L+ AP 
Sbjct: 4   DIFR----KKRLTIMDLHPGAGKTKR---YLPAIVREAIKRGLRTLILAPT 47


>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
           virus [TaxId: 11089]}
          Length = 140

 Score = 25.0 bits (53), Expect = 5.5
 Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 2/81 (2%)

Query: 122 QNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFY 181
           + + T+L    G GKT         L +    +   LV AP   +++  +E        +
Sbjct: 6   KGMTTVLDFHPGAGKT--RRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKF 63

Query: 182 VVTYVGDKDCRIVLRDHDISW 202
                        + D     
Sbjct: 64  HTQAFSAHGSGREVIDAMCHA 84


>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
           1902]}
          Length = 399

 Score = 25.2 bits (53), Expect = 8.3
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)

Query: 178 PDFYVVTYVGDKDCRIVLRDHDISWEDTANRG 209
              ++VT     D R+V  D     E   +R 
Sbjct: 42  GWAWLVT--RHDDVRLVTNDPRFGREAVMDRQ 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 835,069
Number of extensions: 39104
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 13
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)