BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14605
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4
(Mi2b)
Length = 61
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 4 IQDLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60
+ +T+HQDYCEVCQQGGEIILCDTCPRAYH+ CLDP++++ PEGKWSCP C +G
Sbjct: 3 LGSYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 59
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 11 HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
H+D+C VC++ G++++CDTC R YHL CLDP L P+G W CPRC
Sbjct: 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 49
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger
Protein 21a
Length = 56
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 36/49 (73%)
Query: 8 QTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
+ H+D+C VC++ G++++CDTC R YHL CLDP L P+G W CPRC
Sbjct: 5 SSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
H ++C VC+ GGE++ CDTCP +YH+ CL+P L E P G+W CPRC
Sbjct: 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 54
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With
C- Terminal Loop Replaced By Corresponding Loop From
Wstf
Length = 61
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
H ++C VC+ GGE++ CDTCP +YH+ CL P L E P+G+W CPRC
Sbjct: 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRCT 54
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 7 LQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETAS 66
+ +++D C VC+ GGE+I CD CPRA+HL CL P L E P G W C C+ E
Sbjct: 3 MAQKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEV-Q 61
Query: 67 PPAEE 71
P AEE
Sbjct: 62 PRAEE 66
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 9 TEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
++++D C VC+ GGE+I CD CPRA+HL CL P L E P G W C C+
Sbjct: 2 SKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCL 50
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 11 HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET 64
++D+C VCQ GG+++ C+ CP+ +HL C P L P G W C C G PE
Sbjct: 6 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEV 59
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 11 HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPET 64
++D+C VCQ GGE++ C+ CP+ +HL C P L P G+W C C PE
Sbjct: 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEV 56
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-7
pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 107
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 8/59 (13%)
Query: 2 SHIQDLQTE----HQDYCEVCQQGGEIILCDT--CPRAYHLCCLDPELDETPEGKWSCP 54
S+ + ++TE H+DYC C GGE+++CD CP+AYHL CL+ L + P GKW CP
Sbjct: 1 SNARKIKTEPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECP 57
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C+VC++ GE +ILCD C +A+HL CL P L E P+G+W CP C
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
C+VC +G E ++ CD C YH+ CL P L E P G W CP+C+
Sbjct: 19 CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCI 64
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 15 CEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C + +++ CD C R YH+ CL+P + E PEG WSC C
Sbjct: 64 CGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLC 105
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
Finger-Bromodomain
Length = 189
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 15 CEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C VCQ+ G++++C+ C +HL C P L + P +WSC C
Sbjct: 5 CRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 46
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 15 CEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C+ C+Q GE +++CDTC + YH CL P + P W C C
Sbjct: 57 CQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNC 101
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 15 CEVCQQGGEII---LCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C VC G+++ C TC + YH CLD + W CP C
Sbjct: 10 CAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC 54
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 15 CEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
C VCQ+ G++++C+ C +HL C P L + P +WSC C
Sbjct: 28 CRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 69
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 15 CEVC---QQGGEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG 60
C +C Q + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 177 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 226
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 15 CEVC---QQGGEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSD 59
C +C Q + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 193 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 241
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 11 HQDYCEVCQQGGEI---ILCDTCPRAYHLCCLDPELDETPEGK-WSCPRCVSD 59
H C VC E +LCD C AYH+ CL+P LD+ PE + W CP C +D
Sbjct: 25 HSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKTD 77
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG 60
Q + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 15 QDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 57
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG 60
Q + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 30 QDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 72
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSDG 60
Q + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 28 QDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 70
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSD 59
Q + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 36 QDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRCVSD 59
Q + ++CD C A+H+ CLDP L P E +W CP C +D
Sbjct: 28 QDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
+ ++ CD+C R +H+ C DP L P+G W C C
Sbjct: 72 KNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRC 56
+ ++ CD+C R +H+ C DP L P+G W C C
Sbjct: 70 KNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 107
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
pdb|3C6W|C Chain C, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
Length = 59
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 22 GEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVSD 59
GE+I CD CP +H C+D L P+GKW CPRCV +
Sbjct: 20 GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETP-EGKWSCPRC 56
Q + ++CD C A+H+ CLDP L P E +W CP C
Sbjct: 33 QDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 71
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Family, Member 1-Like
Length = 71
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 22 GEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
GE+I CD CP +H C+ L P+GKW CP+C D P +
Sbjct: 27 GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDSGPSSG 71
>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
Element-Binding Transcription Factor 2
Length = 66
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 15 CEVCQQG-----GEIILCDTCPRAYHLCCLDPELDET---PEGKWSCPRCV 57
C +CQ+ E+++CD C + YH C P +D + + KW C +CV
Sbjct: 9 CTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV 59
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 32.7 bits (73), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 22 GEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVS 58
GE++ CD CP +H C+ L E P+GKW CP+C +
Sbjct: 17 GEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTA 54
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With
H3k4me3 Peptide
Length = 62
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 22 GEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVSDG 60
GE+I CD CP +H C+ L P+GKW CP+C D
Sbjct: 22 GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDN 61
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With
A Histone H3k4me3 Peptide
Length = 62
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 22 GEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRC 56
GE+I CD CP +H C+ L+ P+GKW CP+C
Sbjct: 22 GEMIGCDNDECPIEWFHFSCVG--LNHKPKGKWYCPKC 57
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25079
Length = 71
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 22 GEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
GE+I CD +H C+ L P GKW CPRC + P +
Sbjct: 27 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGPSSG 71
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25009
Length = 91
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 22 GEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETA 65
GE+I CD +H C+ L P GKW CPRC + P +
Sbjct: 47 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGPSSG 91
>pdb|1XOY|A Chain A, Solution Structure Of At3g04780.1, An Arabidopsis Ortholog
Of The C-Terminal Domain Of Human Thioredoxin-Like
Protein
Length = 161
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 53 CPRCVSDGPP-ETASPPAEEVKEKEVLCAFLKFQSAKDIDLAIQ 95
C V+D PP +TA E +K K V+ ++KFQ+ + + + I+
Sbjct: 98 CFSNVNDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIE 141
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3
Histone Peptide
pdb|2PNX|C Chain C, The Phd Finger Of Ing4 In Complex With An H3k4me3
Histone Peptide
Length = 55
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 22 GEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRC 56
GE+I CD +H C+ L P GKW CPRC
Sbjct: 16 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRC 51
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4
Length = 63
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 22 GEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRC 56
GE+I CD +H C+ L P GKW CPRC
Sbjct: 21 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRC 56
>pdb|2LRI|C Chain C, Nmr Structure Of The Second Phd Finger Of Aire
(aire-phd2)
Length = 66
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 15 CEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPP 62
C VC G +++ C C A+H C P P C C D P
Sbjct: 15 CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex
With A H3k4me3 Peptide
Length = 75
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 15 CEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58
C G +I CD C YH C+ E +W CP+C +
Sbjct: 24 CNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
pdb|2VNF|C Chain C, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
Length = 60
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 22 GEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRC 56
GE+I CD +H C+ L P GKW CPRC
Sbjct: 21 GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRC 56
>pdb|1X4A|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor Sf2
Length = 109
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 47 PEGKWSCPRCVSDGPPETASPPAEEVKEKEVLCAFLKFQSAKDIDLAIQRG 97
P G C V + PP+ ++ K++ F K+ + +DIDL +RG
Sbjct: 17 PAGNNDCRIYVGNLPPD--------IRTKDIEDVFYKYGAIRDIDLKNRRG 59
>pdb|2PV0|B Chain B, Dna Methyltransferase 3 Like Protein (Dnmt3l)
pdb|2PV0|A Chain A, Dna Methyltransferase 3 Like Protein (Dnmt3l)
pdb|2PV0|C Chain C, Dna Methyltransferase 3 Like Protein (Dnmt3l)
pdb|2PVC|B Chain B, Dnmt3l Recognizes Unmethylated Histone H3 Lysine 4
pdb|2PVC|A Chain A, Dnmt3l Recognizes Unmethylated Histone H3 Lysine 4
pdb|2PVC|C Chain C, Dnmt3l Recognizes Unmethylated Histone H3 Lysine 4
Length = 386
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 11 HQDYCEVCQQGGEIILCDT--CPRAYHLCCLDPELDETPEGK------WSCPRCVSDGPP 62
+Q YC +C G +++C C R Y C+D + GK W C C+ P
Sbjct: 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCL---PS 148
Query: 63 ETASPPAEEVKEKEVLCAFLKFQSAKDIDL 92
+ K + L AF +S +++
Sbjct: 149 SRSGLLQRRRKWRSQLKAFYDRESENPLEM 178
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant
Length = 63
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 22 GEIILCDT---CPRAYHLCCLDPELDETPEGKWSCPRC 56
GE+I CD +H C+ L P GKW CPRC
Sbjct: 21 GEMIGCDDPDCSIEWFHFACVG--LTTKPRGKWFCPRC 56
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 15 CEVC-----QQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
C +C Q I+ CD C A H C + PEG+W C C+
Sbjct: 28 CSICMDGESQNSNVILFCDMCNLAVHQECYG--VPYIPEGQWLCRHCL 73
>pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2
Length = 276
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEV 77
++G +I+L CP P+ ++PE P ++ PP+ P + V EK V
Sbjct: 215 RKGDKILLNACCPGWVRTDMAGPKATKSPEEGAETPVYLALLPPDAEGPHGQFVSEKRV 273
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 15 CEVC-----QQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57
C +C Q I+ CD C A H C + PEG+W C C+
Sbjct: 19 CSICMDGESQNSNVILFCDMCNLAVHQECYG--VPYIPEGQWLCRHCL 64
>pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp
pdb|3BHI|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With Nadp
pdb|3BHJ|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With Glutathione
pdb|3BHM|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With S-Hydroxymethylglutathione
Length = 276
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 19 QQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASPPAEEVKEKEV 77
++G +I+L CP P+ ++PE P ++ PP+ P + V EK V
Sbjct: 215 RKGDKILLNACCPGWVRTDMAGPKATKSPEEGAETPVYLALLPPDAEGPHGQFVSEKRV 273
>pdb|3LDY|A Chain A, An Extraordinary Mechanism Of Dna Perturbation Exhibited
By The Rare- Cutting Hnh Restriction Endonuclease Paci
pdb|3M7K|A Chain A, Crystal Structure Of Paci-Dna Enzyme Product Complex
Length = 142
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEG 49
H YC + + G L T PR YH+ CL + ++ EG
Sbjct: 61 RHCGYCGI-SEAGFTSLHRTNPRGYHIQCLGVDRSDSFEG 99
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2
Peptide And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2
Peptide And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 26.6 bits (57), Expect = 4.5, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 25 ILCDTCPRAYHLCCLDPE-LDETPEGKWSCPRCV 57
I CD+C YH C E + K+ CP+CV
Sbjct: 59 IGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCV 92
>pdb|3A1B|A Chain A, Crystal Structure Of The Dnmt3a Add Domain In Complex With
Histone H3
Length = 159
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 11 HQDYCEVCQQGGEIILC--DTCPRAYHLCCLDPELD------ETPEGKWSCPRCVSDG 60
+Q YC +C G E+++C + C R + + C+D + E W+C C G
Sbjct: 78 YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135
>pdb|3A1A|A Chain A, Crystal Structure Of The Dnmt3a Add Domain
Length = 144
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 11 HQDYCEVCQQGGEIILC--DTCPRAYHLCCLDPELD------ETPEGKWSCPRCVSDG 60
+Q YC +C G E+++C + C R + + C+D + E W+C C G
Sbjct: 63 YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,983,017
Number of Sequences: 62578
Number of extensions: 149183
Number of successful extensions: 334
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 65
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)