Query psy14605
Match_columns 139
No_of_seqs 201 out of 1179
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 16:00:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0825|consensus 99.2 2E-11 4.3E-16 109.7 4.8 50 11-60 214-267 (1134)
2 KOG1244|consensus 99.0 7.3E-11 1.6E-15 95.5 2.1 50 10-59 279-331 (336)
3 KOG4299|consensus 99.0 6.6E-11 1.4E-15 104.0 1.6 51 12-62 253-308 (613)
4 PF00628 PHD: PHD-finger; Int 99.0 4.9E-11 1.1E-15 73.2 0.3 45 14-58 1-50 (51)
5 smart00249 PHD PHD zinc finger 98.8 2.2E-09 4.8E-14 63.3 2.9 43 14-56 1-47 (47)
6 KOG1973|consensus 98.8 1.9E-09 4.1E-14 87.6 2.1 49 10-60 217-269 (274)
7 COG5034 TNG2 Chromatin remodel 98.8 2E-09 4.4E-14 86.3 2.1 48 9-59 218-270 (271)
8 cd04718 BAH_plant_2 BAH, or Br 98.6 4.4E-08 9.5E-13 73.2 3.0 30 33-62 1-30 (148)
9 KOG1512|consensus 98.5 5.4E-08 1.2E-12 79.6 1.7 46 13-60 315-364 (381)
10 KOG0383|consensus 98.4 6.2E-08 1.3E-12 87.2 1.3 51 9-59 44-94 (696)
11 KOG0957|consensus 98.0 1.6E-06 3.5E-11 75.5 1.6 47 13-59 545-598 (707)
12 KOG1245|consensus 98.0 1.1E-06 2.3E-11 84.6 -1.0 54 7-60 1103-1159(1404)
13 KOG4443|consensus 97.9 3.6E-06 7.9E-11 75.0 1.7 48 11-58 67-117 (694)
14 KOG0955|consensus 97.8 9.1E-06 2E-10 76.2 2.7 49 9-59 216-269 (1051)
15 KOG4323|consensus 97.8 6.1E-06 1.3E-10 71.4 1.3 48 12-59 168-224 (464)
16 KOG0954|consensus 97.7 1E-05 2.2E-10 73.1 1.0 48 10-59 269-321 (893)
17 COG5141 PHD zinc finger-contai 97.6 3.2E-05 7E-10 67.5 1.6 49 10-60 191-244 (669)
18 PF13831 PHD_2: PHD-finger; PD 97.5 1.6E-05 3.5E-10 46.0 -0.4 34 22-57 2-36 (36)
19 KOG1473|consensus 97.5 7.1E-05 1.5E-09 70.3 2.8 54 9-62 341-394 (1414)
20 KOG0956|consensus 97.5 4.4E-05 9.6E-10 68.8 1.3 47 11-59 4-57 (900)
21 PF14446 Prok-RING_1: Prokaryo 94.5 0.019 4.1E-07 36.1 1.2 30 12-41 5-38 (54)
22 PF15446 zf-PHD-like: PHD/FYVE 94.4 0.017 3.6E-07 44.3 0.9 31 14-44 1-37 (175)
23 KOG4299|consensus 94.2 0.033 7.2E-07 50.0 2.4 48 12-59 47-95 (613)
24 KOG3612|consensus 93.3 0.088 1.9E-06 46.8 3.5 57 6-62 54-111 (588)
25 KOG1246|consensus 92.6 0.11 2.3E-06 48.8 3.2 50 10-59 153-204 (904)
26 KOG4443|consensus 92.4 0.032 7E-07 50.4 -0.4 46 13-58 19-70 (694)
27 KOG0957|consensus 92.3 0.084 1.8E-06 46.8 2.1 48 13-60 120-180 (707)
28 PF12861 zf-Apc11: Anaphase-pr 91.5 0.053 1.2E-06 37.1 -0.1 32 27-59 49-80 (85)
29 KOG0383|consensus 89.6 0.29 6.4E-06 44.8 2.9 39 29-67 1-39 (696)
30 PF13771 zf-HC5HC2H: PHD-like 88.8 0.21 4.5E-06 33.3 1.1 29 13-41 37-68 (90)
31 KOG1473|consensus 87.8 0.072 1.6E-06 50.9 -2.2 49 13-61 429-481 (1414)
32 PF13832 zf-HC5HC2H_2: PHD-zin 86.5 0.35 7.6E-06 33.5 1.1 31 11-41 54-87 (110)
33 KOG4628|consensus 86.2 0.72 1.6E-05 39.1 3.1 47 13-62 230-279 (348)
34 KOG1512|consensus 86.2 0.31 6.6E-06 40.6 0.8 46 13-58 259-316 (381)
35 PF13901 DUF4206: Domain of un 82.6 0.89 1.9E-05 35.4 2.0 36 14-58 154-197 (202)
36 KOG1081|consensus 81.4 1.1 2.5E-05 39.2 2.4 33 9-41 86-126 (463)
37 PF13639 zf-RING_2: Ring finge 79.9 0.11 2.4E-06 30.3 -3.1 40 14-57 2-44 (44)
38 PF07649 C1_3: C1-like domain; 77.9 0.78 1.7E-05 24.8 0.2 26 14-39 2-30 (30)
39 PF10367 Vps39_2: Vacuolar sor 74.2 2 4.3E-05 29.0 1.5 30 11-40 77-108 (109)
40 KOG1244|consensus 71.0 1.2 2.5E-05 37.0 -0.4 48 12-59 224-284 (336)
41 PF11793 FANCL_C: FANCL C-term 70.5 1.8 3.9E-05 28.1 0.5 47 13-59 3-64 (70)
42 cd00162 RING RING-finger (Real 69.9 1.1 2.4E-05 24.8 -0.6 41 15-58 2-43 (45)
43 PF10497 zf-4CXXC_R1: Zinc-fin 67.1 2 4.3E-05 30.2 0.2 50 9-58 4-69 (105)
44 smart00184 RING Ring finger. E 65.7 0.97 2.1E-05 24.1 -1.3 28 15-42 1-28 (39)
45 PF03107 C1_2: C1 domain; Int 64.9 5.8 0.00013 21.4 1.8 26 14-39 2-30 (30)
46 PF08746 zf-RING-like: RING-li 64.2 1.4 2.9E-05 26.1 -0.9 40 15-56 1-43 (43)
47 PF00130 C1_1: Phorbol esters/ 62.1 6.2 0.00014 23.5 1.8 30 11-40 10-44 (53)
48 TIGR01206 lysW lysine biosynth 61.6 5.6 0.00012 24.8 1.5 29 14-42 4-40 (54)
49 COG1773 Rubredoxin [Energy pro 60.4 6.1 0.00013 24.8 1.5 10 49-58 35-44 (55)
50 PRK14559 putative protein seri 59.9 8 0.00017 35.4 2.7 45 14-59 3-50 (645)
51 PF04216 FdhE: Protein involve 59.4 6.4 0.00014 32.0 1.9 27 10-36 170-209 (290)
52 KOG1493|consensus 54.9 0.74 1.6E-05 31.1 -3.5 30 29-59 50-79 (84)
53 KOG1632|consensus 54.3 6.3 0.00014 33.3 1.1 39 22-60 73-114 (345)
54 PF05191 ADK_lid: Adenylate ki 53.7 8.8 0.00019 21.8 1.3 27 26-58 3-29 (36)
55 PRK03564 formate dehydrogenase 53.3 10 0.00023 31.6 2.2 27 11-37 186-225 (309)
56 PLN03208 E3 ubiquitin-protein 49.3 5.3 0.00011 31.3 -0.1 50 10-59 16-77 (193)
57 PF10080 DUF2318: Predicted me 48.9 10 0.00022 26.6 1.3 29 12-40 35-68 (102)
58 TIGR01562 FdhE formate dehydro 48.4 14 0.00031 30.7 2.3 28 10-37 182-223 (305)
59 cd00730 rubredoxin Rubredoxin; 47.9 11 0.00024 23.0 1.2 10 50-59 34-43 (50)
60 KOG2114|consensus 47.2 7.9 0.00017 36.6 0.6 40 12-58 840-880 (933)
61 PF12678 zf-rbx1: RING-H2 zinc 46.8 2.7 5.9E-05 27.4 -1.8 41 13-57 20-73 (73)
62 PF05502 Dynactin_p62: Dynacti 46.3 11 0.00024 33.2 1.4 17 24-40 5-21 (483)
63 cd00029 C1 Protein kinase C co 46.1 12 0.00025 21.6 1.1 29 12-40 11-44 (50)
64 KOG1829|consensus 45.7 4.6 0.0001 36.5 -1.1 29 24-59 531-559 (580)
65 PRK11827 hypothetical protein; 44.8 14 0.0003 23.6 1.3 22 13-34 9-36 (60)
66 PF15446 zf-PHD-like: PHD/FYVE 44.4 21 0.00046 27.5 2.5 19 24-42 124-142 (175)
67 KOG0317|consensus 43.4 7.6 0.00016 32.2 -0.1 50 9-62 236-285 (293)
68 PHA02929 N1R/p28-like protein; 42.8 8.5 0.00019 31.0 0.1 46 10-59 172-225 (238)
69 PF05837 CENP-H: Centromere pr 42.7 77 0.0017 22.0 5.0 34 104-137 56-89 (106)
70 PF13922 PHD_3: PHD domain of 41.4 5.3 0.00012 26.1 -1.0 20 23-42 42-61 (69)
71 KOG1734|consensus 41.3 8.1 0.00018 32.1 -0.2 49 9-59 221-279 (328)
72 PF12773 DZR: Double zinc ribb 40.7 16 0.00035 21.4 1.1 11 49-59 28-38 (50)
73 PF00641 zf-RanBP: Zn-finger i 40.6 11 0.00025 20.0 0.4 14 48-61 2-15 (30)
74 smart00547 ZnF_RBZ Zinc finger 40.2 13 0.00029 18.9 0.6 12 49-60 1-12 (26)
75 smart00109 C1 Protein kinase C 39.4 8.2 0.00018 22.0 -0.4 29 12-40 11-43 (49)
76 PF09297 zf-NADH-PPase: NADH p 39.0 21 0.00046 19.3 1.3 21 12-32 3-29 (32)
77 COG5047 SEC23 Vesicle coat com 38.7 19 0.00041 33.0 1.6 34 23-60 52-86 (755)
78 cd00350 rubredoxin_like Rubred 38.5 21 0.00046 19.6 1.3 11 49-59 16-26 (33)
79 KOG4323|consensus 37.5 21 0.00047 31.5 1.8 48 10-59 81-133 (464)
80 TIGR03831 YgiT_finger YgiT-typ 37.5 7.7 0.00017 22.1 -0.7 10 50-59 32-41 (46)
81 COG1107 Archaea-specific RecJ- 37.3 19 0.00041 33.0 1.4 10 52-61 97-106 (715)
82 PLN02638 cellulose synthase A 36.0 29 0.00062 33.8 2.5 47 10-59 15-68 (1079)
83 PF08274 PhnA_Zn_Ribbon: PhnA 35.9 26 0.00056 19.2 1.3 19 13-31 3-26 (30)
84 PF02318 FYVE_2: FYVE-type zin 35.3 16 0.00035 25.8 0.6 46 11-59 53-103 (118)
85 PF13240 zinc_ribbon_2: zinc-r 35.2 18 0.0004 18.4 0.6 6 15-20 2-7 (23)
86 KOG3799|consensus 34.7 12 0.00027 27.9 -0.1 49 10-58 63-115 (169)
87 PLN02436 cellulose synthase A 34.4 31 0.00066 33.6 2.4 46 11-59 35-87 (1094)
88 PLN02400 cellulose synthase 34.2 42 0.0009 32.7 3.2 46 11-59 35-87 (1085)
89 PF12472 DUF3693: Phage relate 33.3 26 0.00057 22.0 1.3 20 111-130 7-27 (60)
90 KOG2879|consensus 32.5 27 0.00059 28.9 1.5 50 10-61 237-287 (298)
91 PF07227 DUF1423: Protein of u 32.2 32 0.0007 30.2 2.0 45 15-59 131-192 (446)
92 KOG4215|consensus 31.9 22 0.00047 30.8 0.9 25 10-34 17-46 (432)
93 PRK00420 hypothetical protein; 31.8 26 0.00056 25.1 1.1 19 43-61 33-51 (112)
94 PF15227 zf-C3HC4_4: zinc fing 31.5 10 0.00022 22.0 -0.8 28 29-56 15-42 (42)
95 KOG1986|consensus 31.3 27 0.00057 32.5 1.4 34 23-60 52-85 (745)
96 PF15616 TerY-C: TerY-C metal 29.6 39 0.00084 24.8 1.8 38 13-60 78-115 (131)
97 PF03380 DUF282: Caenorhabditi 29.5 43 0.00094 19.6 1.6 16 27-42 2-17 (39)
98 PRK04023 DNA polymerase II lar 28.4 34 0.00074 33.2 1.6 24 10-33 624-647 (1121)
99 COG2835 Uncharacterized conser 27.9 40 0.00088 21.5 1.4 22 13-34 9-36 (60)
100 PF07496 zf-CW: CW-type Zinc F 27.8 30 0.00066 20.8 0.8 32 25-57 4-36 (50)
101 COG5574 PEX10 RING-finger-cont 27.8 16 0.00035 30.0 -0.5 49 11-61 214-262 (271)
102 PLN02189 cellulose synthase 27.7 45 0.00098 32.4 2.3 46 11-59 33-85 (1040)
103 COG5141 PHD zinc finger-contai 26.8 26 0.00055 31.6 0.5 32 11-42 302-336 (669)
104 PF08792 A2L_zn_ribbon: A2L zi 26.4 40 0.00086 18.8 1.1 22 13-34 4-31 (33)
105 PLN02195 cellulose synthase A 25.5 50 0.0011 31.8 2.2 48 11-61 5-59 (977)
106 PF04810 zf-Sec23_Sec24: Sec23 24.8 24 0.00052 20.2 -0.0 32 24-59 2-33 (40)
107 KOG3896|consensus 24.7 71 0.0015 27.5 2.7 36 22-62 22-57 (449)
108 KOG4218|consensus 24.4 28 0.00061 30.0 0.3 27 8-34 11-42 (475)
109 KOG1952|consensus 24.1 20 0.00043 34.0 -0.7 47 13-59 192-245 (950)
110 KOG2932|consensus 24.0 40 0.00087 28.6 1.1 37 13-58 91-131 (389)
111 PF00301 Rubredoxin: Rubredoxi 23.8 47 0.001 20.0 1.1 11 49-59 33-43 (47)
112 smart00744 RINGv The RING-vari 23.7 13 0.00028 22.3 -1.4 41 14-56 1-48 (49)
113 KOG0956|consensus 23.6 36 0.00078 31.9 0.8 47 13-59 118-180 (900)
114 PF14569 zf-UDP: Zinc-binding 23.1 9 0.0002 25.8 -2.3 48 9-59 6-60 (80)
115 KOG3092|consensus 23.0 70 0.0015 25.4 2.2 34 29-62 108-146 (216)
116 PHA02862 5L protein; Provision 23.0 18 0.00038 27.3 -1.1 48 12-61 2-53 (156)
117 KOG4718|consensus 22.8 16 0.00035 29.2 -1.4 47 10-57 179-226 (235)
118 KOG1844|consensus 22.7 57 0.0012 28.3 1.9 41 21-62 98-138 (508)
119 PF14369 zf-RING_3: zinc-finge 22.7 65 0.0014 18.0 1.5 30 25-61 3-32 (35)
120 PHA02825 LAP/PHD finger-like p 22.1 22 0.00047 27.1 -0.7 49 10-60 6-58 (162)
121 PLN02915 cellulose synthase A 22.1 63 0.0014 31.4 2.1 46 11-59 14-66 (1044)
122 COG5540 RING-finger-containing 22.0 36 0.00078 28.8 0.5 45 13-60 324-371 (374)
123 TIGR00595 priA primosomal prot 21.7 60 0.0013 28.6 1.8 10 50-59 253-262 (505)
124 smart00290 ZnF_UBP Ubiquitin C 21.4 77 0.0017 18.3 1.8 6 51-56 12-17 (50)
125 PF14787 zf-CCHC_5: GAG-polypr 21.1 48 0.001 19.0 0.7 12 26-37 4-15 (36)
126 PF09416 UPF1_Zn_bind: RNA hel 20.1 51 0.0011 24.9 0.9 22 14-35 2-25 (152)
No 1
>KOG0825|consensus
Probab=99.18 E-value=2e-11 Score=109.68 Aligned_cols=50 Identities=36% Similarity=1.014 Sum_probs=44.2
Q ss_pred cccccccccccC---ceEEeccCCCC-CcccccCCCCCCCCCCCccccccccCC
Q psy14605 11 HQDYCEVCQQGG---EIILCDTCPRA-YHLCCLDPELDETPEGKWSCPRCVSDG 60 (139)
Q Consensus 11 ~~~~C~vC~~~g---~ll~Cd~C~~~-~H~~Cl~P~l~~~p~~~W~C~~C~~~~ 60 (139)
+...|.+|...+ -||+||.|+.+ ||+|||+|++..+|.+.|||++|+-..
T Consensus 214 E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~ 267 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLE 267 (1134)
T ss_pred ccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhh
Confidence 345699999875 49999999999 999999999999999999999998653
No 2
>KOG1244|consensus
Probab=99.04 E-value=7.3e-11 Score=95.53 Aligned_cols=50 Identities=40% Similarity=1.148 Sum_probs=44.0
Q ss_pred cccccccccccc---CceEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 10 EHQDYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 10 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
.+-.+|.+|+.+ ++||+||.|+++||+||+.||+...|.|.|.|..|...
T Consensus 279 ieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 279 IECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred eecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 344678899875 46999999999999999999999999999999999754
No 3
>KOG4299|consensus
Probab=99.03 E-value=6.6e-11 Score=104.02 Aligned_cols=51 Identities=39% Similarity=1.086 Sum_probs=44.9
Q ss_pred ccccccccccCce---EEeccCCCCCcccccCCC--CCCCCCCCccccccccCCCC
Q psy14605 12 QDYCEVCQQGGEI---ILCDTCPRAYHLCCLDPE--LDETPEGKWSCPRCVSDGPP 62 (139)
Q Consensus 12 ~~~C~vC~~~g~l---l~Cd~C~~~~H~~Cl~P~--l~~~p~~~W~C~~C~~~~~~ 62 (139)
++||..|.+.|.. ++||+|+++||+.|+.|| .+.+|.|.|||++|..+...
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~i 308 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSVI 308 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeeeec
Confidence 4699999999865 999999999999999999 45689999999999876544
No 4
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=99.02 E-value=4.9e-11 Score=73.19 Aligned_cols=45 Identities=49% Similarity=1.228 Sum_probs=38.1
Q ss_pred ccccccc---cCceEEeccCCCCCcccccCCCCC--CCCCCCcccccccc
Q psy14605 14 YCEVCQQ---GGEIILCDTCPRAYHLCCLDPELD--ETPEGKWSCPRCVS 58 (139)
Q Consensus 14 ~C~vC~~---~g~ll~Cd~C~~~~H~~Cl~P~l~--~~p~~~W~C~~C~~ 58 (139)
+|.+|+. .+.||.|+.|..+||..|++|+.. ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5888988 467999999999999999999877 34456999999974
No 5
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1973|consensus
Probab=98.80 E-value=1.9e-09 Score=87.60 Aligned_cols=49 Identities=39% Similarity=1.043 Sum_probs=39.5
Q ss_pred cccccccc-ccccCceEEecc--CC-CCCcccccCCCCCCCCCCCccccccccCC
Q psy14605 10 EHQDYCEV-CQQGGEIILCDT--CP-RAYHLCCLDPELDETPEGKWSCPRCVSDG 60 (139)
Q Consensus 10 ~~~~~C~v-C~~~g~ll~Cd~--C~-~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~ 60 (139)
++..+|.- |...|+||-||. |+ .|||+.|++ |...|.|.|||+.|....
T Consensus 217 ~e~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 217 DEPTYCICNQVSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred CCCEEEEecccccccccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhh
Confidence 34455521 444689999997 99 899999999 999999999999998653
No 7
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=98.80 E-value=2e-09 Score=86.27 Aligned_cols=48 Identities=46% Similarity=1.119 Sum_probs=41.8
Q ss_pred ccccccccccccc--CceEEec--cCCC-CCcccccCCCCCCCCCCCccccccccC
Q psy14605 9 TEHQDYCEVCQQG--GEIILCD--TCPR-AYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 9 ~~~~~~C~vC~~~--g~ll~Cd--~C~~-~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
.++..+|+ |.+. |.||-|| .|.+ |||+.|++ |...|.|.|||+.|...
T Consensus 218 e~e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 218 EGEELYCF-CQQVSYGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKKA 270 (271)
T ss_pred cCceeEEE-ecccccccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHhc
Confidence 35667884 9986 8999999 6987 99999999 99999999999999753
No 8
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.56 E-value=4.4e-08 Score=73.18 Aligned_cols=30 Identities=50% Similarity=1.255 Sum_probs=27.1
Q ss_pred CCcccccCCCCCCCCCCCccccccccCCCC
Q psy14605 33 AYHLCCLDPELDETPEGKWSCPRCVSDGPP 62 (139)
Q Consensus 33 ~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~~ 62 (139)
+||++||.|||+.+|.|+|+||.|......
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSG 30 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCC
Confidence 599999999999999999999999876544
No 9
>KOG1512|consensus
Probab=98.47 E-value=5.4e-08 Score=79.63 Aligned_cols=46 Identities=35% Similarity=0.982 Sum_probs=39.2
Q ss_pred ccccccccc---CceEEeccCCCCCcccccCCCCCCCCCCCcccc-ccccCC
Q psy14605 13 DYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCP-RCVSDG 60 (139)
Q Consensus 13 ~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~-~C~~~~ 60 (139)
..|.+|+++ ..+++||.|+++||++|++ |..+|.|.|.|. .|....
T Consensus 315 ~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~~~ 364 (381)
T KOG1512|consen 315 ELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCREAT 364 (381)
T ss_pred HhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHHhc
Confidence 468888886 4799999999999999999 999999999998 365443
No 10
>KOG0383|consensus
Probab=98.43 E-value=6.2e-08 Score=87.23 Aligned_cols=51 Identities=43% Similarity=1.174 Sum_probs=46.5
Q ss_pred cccccccccccccCceEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 9 TEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 9 ~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
..+..+|.+|+.+|.+|+||.|+.+||.+|++||+...|.+.|.|+.|...
T Consensus 44 ~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 44 DAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred hhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 455678999999999999999999999999999999999989999999543
No 11
>KOG0957|consensus
Probab=98.05 E-value=1.6e-06 Score=75.52 Aligned_cols=47 Identities=36% Similarity=0.981 Sum_probs=40.8
Q ss_pred cccccccccCc---eEEeccCCCCCcccccCCCCCCCCCC----CccccccccC
Q psy14605 13 DYCEVCQQGGE---IILCDTCPRAYHLCCLDPELDETPEG----KWSCPRCVSD 59 (139)
Q Consensus 13 ~~C~vC~~~g~---ll~Cd~C~~~~H~~Cl~P~l~~~p~~----~W~C~~C~~~ 59 (139)
-.|.+|++..+ ++.||+|...||+.||+|||+.+|.. .|.|..|-+.
T Consensus 545 ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk~ 598 (707)
T KOG0957|consen 545 YSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDKN 598 (707)
T ss_pred eeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccccc
Confidence 45999998753 88999999999999999999999875 4999999543
No 12
>KOG1245|consensus
Probab=97.97 E-value=1.1e-06 Score=84.56 Aligned_cols=54 Identities=35% Similarity=0.990 Sum_probs=47.5
Q ss_pred CccccccccccccccC---ceEEeccCCCCCcccccCCCCCCCCCCCccccccccCC
Q psy14605 7 LQTEHQDYCEVCQQGG---EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60 (139)
Q Consensus 7 ~~~~~~~~C~vC~~~g---~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~ 60 (139)
........|.+|...+ +|++|+.|..+||++|+.|.+..+|.++|+||.|....
T Consensus 1103 ~~s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1103 DRSAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3445667899999854 59999999999999999999999999999999998765
No 13
>KOG4443|consensus
Probab=97.94 E-value=3.6e-06 Score=74.99 Aligned_cols=48 Identities=35% Similarity=0.978 Sum_probs=41.0
Q ss_pred cccccccccccC---ceEEeccCCCCCcccccCCCCCCCCCCCcccccccc
Q psy14605 11 HQDYCEVCQQGG---EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58 (139)
Q Consensus 11 ~~~~C~vC~~~g---~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 58 (139)
.-..|..|+.+| ++++|+.|+.+||.||..|++..+|.|.|+|+.|..
T Consensus 67 ~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 67 SCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred CceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHh
Confidence 334566777554 599999999999999999999999999999999854
No 14
>KOG0955|consensus
Probab=97.84 E-value=9.1e-06 Score=76.16 Aligned_cols=49 Identities=37% Similarity=0.909 Sum_probs=42.5
Q ss_pred cccccccccccccC-----ceEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 9 TEHQDYCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 9 ~~~~~~C~vC~~~g-----~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
-+.+.+|.||.++. .+|+||.|+.++|++|++ ...+|+|.|.|..|...
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s 269 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQS 269 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccC
Confidence 36678999999863 599999999999999999 66689999999999754
No 15
>KOG4323|consensus
Probab=97.83 E-value=6.1e-06 Score=71.40 Aligned_cols=48 Identities=33% Similarity=0.859 Sum_probs=39.4
Q ss_pred ccccccccccC-----ceEEeccCCCCCcccccCCCCCCC----CCCCccccccccC
Q psy14605 12 QDYCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDET----PEGKWSCPRCVSD 59 (139)
Q Consensus 12 ~~~C~vC~~~g-----~ll~Cd~C~~~~H~~Cl~P~l~~~----p~~~W~C~~C~~~ 59 (139)
+..|.||..++ .||.|+.|..+||..|+.|+.+.. +...|||..|...
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 34498988642 699999999999999999987653 5568999999765
No 16
>KOG0954|consensus
Probab=97.72 E-value=1e-05 Score=73.08 Aligned_cols=48 Identities=33% Similarity=0.925 Sum_probs=42.6
Q ss_pred cccccccccccc-----CceEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 10 EHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 10 ~~~~~C~vC~~~-----g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
+++..|.||..+ .+||+||.|....|+.|++ +..+|.|.|.|..|.-.
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALG 321 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence 467889999986 3699999999999999999 88999999999998653
No 17
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.55 E-value=3.2e-05 Score=67.47 Aligned_cols=49 Identities=33% Similarity=0.857 Sum_probs=41.5
Q ss_pred ccccccccccccC-----ceEEeccCCCCCcccccCCCCCCCCCCCccccccccCC
Q psy14605 10 EHQDYCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60 (139)
Q Consensus 10 ~~~~~C~vC~~~g-----~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~ 60 (139)
.-++.|.+|.... .+++||+|+.+.|..|++ +..+|+|.|+|..|....
T Consensus 191 ~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~~ 244 (669)
T COG5141 191 EFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYGE 244 (669)
T ss_pred hhhhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcccc
Confidence 4567888888753 499999999999999999 667899999999997653
No 18
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=97.52 E-value=1.6e-05 Score=45.96 Aligned_cols=34 Identities=38% Similarity=1.084 Sum_probs=19.4
Q ss_pred CceEEeccCCCCCcccccCCCCCCCCCC-Cccccccc
Q psy14605 22 GEIILCDTCPRAYHLCCLDPELDETPEG-KWSCPRCV 57 (139)
Q Consensus 22 g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~-~W~C~~C~ 57 (139)
..||.|+.|....|..|++ +..+|.+ .|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 3589999999999999999 5555655 79998874
No 19
>KOG1473|consensus
Probab=97.47 E-value=7.1e-05 Score=70.33 Aligned_cols=54 Identities=31% Similarity=0.730 Sum_probs=48.1
Q ss_pred cccccccccccccCceEEeccCCCCCcccccCCCCCCCCCCCccccccccCCCC
Q psy14605 9 TEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPP 62 (139)
Q Consensus 9 ~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~~ 62 (139)
..-++.|.+|.+.|+++||.+|++.||+.|+.||...+|+..|-|-.|....+.
T Consensus 341 ~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvn 394 (1414)
T KOG1473|consen 341 IEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVN 394 (1414)
T ss_pred eeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccC
Confidence 345578999999999999999999999999999999999999999999855444
No 20
>KOG0956|consensus
Probab=97.46 E-value=4.4e-05 Score=68.75 Aligned_cols=47 Identities=32% Similarity=0.849 Sum_probs=40.3
Q ss_pred ccccccccccc-----CceEEec--cCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 11 HQDYCEVCQQG-----GEIILCD--TCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 11 ~~~~C~vC~~~-----g~ll~Cd--~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
...-|.||.+. ..||.|| .|..+.|+.|++ +..+|.|.|||..|...
T Consensus 4 MVGGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesq 57 (900)
T KOG0956|consen 4 MVGGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQ 57 (900)
T ss_pred cccceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhh
Confidence 34568899984 2599999 699999999999 88999999999999653
No 21
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.53 E-value=0.019 Score=36.11 Aligned_cols=30 Identities=33% Similarity=0.888 Sum_probs=26.0
Q ss_pred ccccccccc----cCceEEeccCCCCCcccccCC
Q psy14605 12 QDYCEVCQQ----GGEIILCDTCPRAYHLCCLDP 41 (139)
Q Consensus 12 ~~~C~vC~~----~g~ll~Cd~C~~~~H~~Cl~P 41 (139)
...|.+|++ +++++.|..|...||-.|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 457999997 468999999999999999864
No 22
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=94.37 E-value=0.017 Score=44.27 Aligned_cols=31 Identities=32% Similarity=0.974 Sum_probs=25.3
Q ss_pred ccccccc------cCceEEeccCCCCCcccccCCCCC
Q psy14605 14 YCEVCQQ------GGEIILCDTCPRAYHLCCLDPELD 44 (139)
Q Consensus 14 ~C~vC~~------~g~ll~Cd~C~~~~H~~Cl~P~l~ 44 (139)
.|.+|+. .|.||.|-+|..+||..|++|-..
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ 37 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQ 37 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccc
Confidence 4778853 267999999999999999997643
No 23
>KOG4299|consensus
Probab=94.15 E-value=0.033 Score=49.96 Aligned_cols=48 Identities=33% Similarity=0.941 Sum_probs=40.5
Q ss_pred ccccccccccCceEEeccCCCCCcccccCCCCCCC-CCCCccccccccC
Q psy14605 12 QDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDET-PEGKWSCPRCVSD 59 (139)
Q Consensus 12 ~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~-p~~~W~C~~C~~~ 59 (139)
-..|.+|..+|++++|+.|+.+||..|.+++++.. +.+.|.|..|...
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~ 95 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPKG 95 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCCcc
Confidence 45699999999999999999999999999988742 3357888888763
No 24
>KOG3612|consensus
Probab=93.32 E-value=0.088 Score=46.78 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=44.7
Q ss_pred CCccccccccccccccCceEEeccCCCCCcccccCCCCCCC-CCCCccccccccCCCC
Q psy14605 6 DLQTEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDET-PEGKWSCPRCVSDGPP 62 (139)
Q Consensus 6 ~~~~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~-p~~~W~C~~C~~~~~~ 62 (139)
....+.+.+|+.|..+|..+.|+-|-+.||..|..|.-... -+..|-|+.|..-..+
T Consensus 54 ~~~~N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~k~~ 111 (588)
T KOG3612|consen 54 LPSSNIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSFKVN 111 (588)
T ss_pred ccccCCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCcccccCCC
Confidence 33457779999999999999999999999999999753322 2357999999765444
No 25
>KOG1246|consensus
Probab=92.55 E-value=0.11 Score=48.75 Aligned_cols=50 Identities=38% Similarity=1.143 Sum_probs=42.8
Q ss_pred ccccccccccccC--ceEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 10 EHQDYCEVCQQGG--EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 10 ~~~~~C~vC~~~g--~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
.....|..|.++. .++.|+.|...||.+|..|++..++++.|.|+.|...
T Consensus 153 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 153 IDYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred ccchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 3445688888765 3449999999999999999999999999999999876
No 26
>KOG4443|consensus
Probab=92.39 E-value=0.032 Score=50.41 Aligned_cols=46 Identities=28% Similarity=0.869 Sum_probs=34.2
Q ss_pred cccccccccC-----ceEEeccCCCCCcccccCCCCCCC-CCCCcccccccc
Q psy14605 13 DYCEVCQQGG-----EIILCDTCPRAYHLCCLDPELDET-PEGKWSCPRCVS 58 (139)
Q Consensus 13 ~~C~vC~~~g-----~ll~Cd~C~~~~H~~Cl~P~l~~~-p~~~W~C~~C~~ 58 (139)
..|.+|+..| .|+.|..|...||.+|+...+... -.+-|.|+.|+.
T Consensus 19 ~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 19 LMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 4577787654 599999999999999998544332 234499999854
No 27
>KOG0957|consensus
Probab=92.34 E-value=0.084 Score=46.80 Aligned_cols=48 Identities=31% Similarity=0.641 Sum_probs=36.1
Q ss_pred ccccccccc-----CceEEeccCCCCCcccccCCC-CCCCCC-------CCccccccccCC
Q psy14605 13 DYCEVCQQG-----GEIILCDTCPRAYHLCCLDPE-LDETPE-------GKWSCPRCVSDG 60 (139)
Q Consensus 13 ~~C~vC~~~-----g~ll~Cd~C~~~~H~~Cl~P~-l~~~p~-------~~W~C~~C~~~~ 60 (139)
..|.||-.. |++|.||.|+...|-.|++-. ...+|+ ..|||--|...-
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gv 180 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGV 180 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCC
Confidence 379999863 689999999999999999853 112333 369999887653
No 28
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=91.49 E-value=0.053 Score=37.08 Aligned_cols=32 Identities=25% Similarity=0.627 Sum_probs=23.7
Q ss_pred eccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 27 CDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 27 Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
-..|.-.||+.|+..-++.. ...=.||.|+..
T Consensus 49 ~g~C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 49 WGKCSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred eccCccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 34599999999998766553 234489999864
No 29
>KOG0383|consensus
Probab=89.59 E-value=0.29 Score=44.84 Aligned_cols=39 Identities=51% Similarity=0.951 Sum_probs=33.8
Q ss_pred cCCCCCcccccCCCCCCCCCCCccccccccCCCCCCCCC
Q psy14605 29 TCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPPETASP 67 (139)
Q Consensus 29 ~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~~~~~~~ 67 (139)
.|++.||..|+.|.+...|+++|+|+.|...+..+.+..
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~ 39 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKD 39 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhccccccccc
Confidence 489999999999998888899999999998877765543
No 30
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=88.81 E-value=0.21 Score=33.33 Aligned_cols=29 Identities=31% Similarity=0.862 Sum_probs=25.8
Q ss_pred ccccccccc-CceEEec--cCCCCCcccccCC
Q psy14605 13 DYCEVCQQG-GEIILCD--TCPRAYHLCCLDP 41 (139)
Q Consensus 13 ~~C~vC~~~-g~ll~Cd--~C~~~~H~~Cl~P 41 (139)
..|.+|+.. |-.+-|. +|.+.||+.|..-
T Consensus 37 ~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 579999998 9999997 6999999999873
No 31
>KOG1473|consensus
Probab=87.79 E-value=0.072 Score=50.94 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=40.8
Q ss_pred cccccccccCceEEecc-CCCCCcc-cccCC--CCCCCCCCCccccccccCCC
Q psy14605 13 DYCEVCQQGGEIILCDT-CPRAYHL-CCLDP--ELDETPEGKWSCPRCVSDGP 61 (139)
Q Consensus 13 ~~C~vC~~~g~ll~Cd~-C~~~~H~-~Cl~P--~l~~~p~~~W~C~~C~~~~~ 61 (139)
..|.+|+..+.+++|++ |+.+||+ .|++- --..++++.|+|+.|.....
T Consensus 429 rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM 481 (1414)
T KOG1473|consen 429 RRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQM 481 (1414)
T ss_pred eeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhc
Confidence 45999999999999986 9999998 99993 23457899999999976543
No 32
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=86.48 E-value=0.35 Score=33.51 Aligned_cols=31 Identities=29% Similarity=0.789 Sum_probs=26.5
Q ss_pred ccccccccccc-CceEEecc--CCCCCcccccCC
Q psy14605 11 HQDYCEVCQQG-GEIILCDT--CPRAYHLCCLDP 41 (139)
Q Consensus 11 ~~~~C~vC~~~-g~ll~Cd~--C~~~~H~~Cl~P 41 (139)
....|.+|+.. |-.+-|.. |...||..|...
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHH
Confidence 45789999995 78999987 999999999863
No 33
>KOG4628|consensus
Probab=86.24 E-value=0.72 Score=39.08 Aligned_cols=47 Identities=32% Similarity=0.767 Sum_probs=35.4
Q ss_pred ccccccccc---CceEEeccCCCCCcccccCCCCCCCCCCCccccccccCCCC
Q psy14605 13 DYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPP 62 (139)
Q Consensus 13 ~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~~ 62 (139)
..|.+|-.. |+.|-==-|.-.||..|++|.|..- .=+||.|...-..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcCCC
Confidence 689999974 5544446788899999999987653 3489999875444
No 34
>KOG1512|consensus
Probab=86.17 E-value=0.31 Score=40.57 Aligned_cols=46 Identities=17% Similarity=0.337 Sum_probs=34.3
Q ss_pred ccccccccc---------CceEEeccCCCCCcccccCCCCCC---CCCCCcccccccc
Q psy14605 13 DYCEVCQQG---------GEIILCDTCPRAYHLCCLDPELDE---TPEGKWSCPRCVS 58 (139)
Q Consensus 13 ~~C~vC~~~---------g~ll~Cd~C~~~~H~~Cl~P~l~~---~p~~~W~C~~C~~ 58 (139)
..|.+|-++ ..+++|..|...+|.+|+.-+..- +....|.|..|..
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l 316 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL 316 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh
Confidence 457777764 249999999999999999844222 2346899999864
No 35
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=82.60 E-value=0.89 Score=35.38 Aligned_cols=36 Identities=31% Similarity=1.010 Sum_probs=27.9
Q ss_pred ccccccccC--------ceEEeccCCCCCcccccCCCCCCCCCCCcccccccc
Q psy14605 14 YCEVCQQGG--------EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58 (139)
Q Consensus 14 ~C~vC~~~g--------~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 58 (139)
+|.+|.+++ ...-|..|...||..|... . .||.|..
T Consensus 154 iCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~----~-----~CpkC~R 197 (202)
T PF13901_consen 154 ICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK----K-----SCPKCAR 197 (202)
T ss_pred CCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC----C-----CCCCcHh
Confidence 577777642 4788999999999999872 1 2999964
No 36
>KOG1081|consensus
Probab=81.35 E-value=1.1 Score=39.17 Aligned_cols=33 Identities=27% Similarity=0.597 Sum_probs=25.2
Q ss_pred cccccccccccccCceEEec--------cCCCCCcccccCC
Q psy14605 9 TEHQDYCEVCQQGGEIILCD--------TCPRAYHLCCLDP 41 (139)
Q Consensus 9 ~~~~~~C~vC~~~g~ll~Cd--------~C~~~~H~~Cl~P 41 (139)
..+...|++|.++|.+++|+ .|+.+||..|...
T Consensus 86 ~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~~~~~c~~~ 126 (463)
T KOG1081|consen 86 KIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPAQLEKCSKR 126 (463)
T ss_pred CCCcchhccccCCCccceeccccccccccCcCccCcccccC
Confidence 45567899999999999999 5666666666554
No 37
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=79.93 E-value=0.11 Score=30.35 Aligned_cols=40 Identities=30% Similarity=0.739 Sum_probs=26.1
Q ss_pred cccccccc---CceEEeccCCCCCcccccCCCCCCCCCCCccccccc
Q psy14605 14 YCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57 (139)
Q Consensus 14 ~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~ 57 (139)
.|.+|... ++.+.--.|+-.||..|+...+... -.||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC----CcCCccC
Confidence 58888874 3333333499999999998654432 3788874
No 38
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=77.89 E-value=0.78 Score=24.81 Aligned_cols=26 Identities=23% Similarity=0.538 Sum_probs=11.7
Q ss_pred ccccccccC---ceEEeccCCCCCccccc
Q psy14605 14 YCEVCQQGG---EIILCDTCPRAYHLCCL 39 (139)
Q Consensus 14 ~C~vC~~~g---~ll~Cd~C~~~~H~~Cl 39 (139)
.|.+|+..+ ..-.|..|+-..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 588898853 47789999999998874
No 39
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=74.18 E-value=2 Score=28.99 Aligned_cols=30 Identities=20% Similarity=0.628 Sum_probs=21.3
Q ss_pred ccccccccccc--CceEEeccCCCCCcccccC
Q psy14605 11 HQDYCEVCQQG--GEIILCDTCPRAYHLCCLD 40 (139)
Q Consensus 11 ~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ 40 (139)
....|.+|++. .....-.-|+..||..|..
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 34679999985 3444444566899999974
No 40
>KOG1244|consensus
Probab=70.98 E-value=1.2 Score=36.95 Aligned_cols=48 Identities=27% Similarity=0.730 Sum_probs=35.5
Q ss_pred cccccccccc----------CceEEeccCCCCCcccccCCCCC---CCCCCCccccccccC
Q psy14605 12 QDYCEVCQQG----------GEIILCDTCPRAYHLCCLDPELD---ETPEGKWSCPRCVSD 59 (139)
Q Consensus 12 ~~~C~vC~~~----------g~ll~Cd~C~~~~H~~Cl~P~l~---~~p~~~W~C~~C~~~ 59 (139)
..+|..|-++ .+||.|..|+++=|.+|+.-... .+-...|.|.+|..-
T Consensus 224 n~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~c 284 (336)
T KOG1244|consen 224 NPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYC 284 (336)
T ss_pred CcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeeccee
Confidence 4578888753 26999999999999999972211 234468999999754
No 41
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=70.52 E-value=1.8 Score=28.11 Aligned_cols=47 Identities=28% Similarity=0.590 Sum_probs=18.8
Q ss_pred ccccccccc----C--ceEEec--cCCCCCcccccCCCCCCCC-------CCCccccccccC
Q psy14605 13 DYCEVCQQG----G--EIILCD--TCPRAYHLCCLDPELDETP-------EGKWSCPRCVSD 59 (139)
Q Consensus 13 ~~C~vC~~~----g--~ll~Cd--~C~~~~H~~Cl~P~l~~~p-------~~~W~C~~C~~~ 59 (139)
..|.+|... + ..+.|+ .|...||..||.-.+...+ .-.+-||.|...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 468888863 2 257898 9999999999964322111 123569999754
No 42
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=69.92 E-value=1.1 Score=24.83 Aligned_cols=41 Identities=29% Similarity=0.707 Sum_probs=27.5
Q ss_pred cccccccC-ceEEeccCCCCCcccccCCCCCCCCCCCcccccccc
Q psy14605 15 CEVCQQGG-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58 (139)
Q Consensus 15 C~vC~~~g-~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 58 (139)
|.+|...- +.+.-..|+-.||..|+...+.. +...||.|..
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 67777653 44445568888999998754332 3457888864
No 43
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=67.14 E-value=2 Score=30.23 Aligned_cols=50 Identities=22% Similarity=0.676 Sum_probs=32.7
Q ss_pred ccccccccccccc--CceEEe------ccC---CCCCcccccCCCC-----CCCCCCCcccccccc
Q psy14605 9 TEHQDYCEVCQQG--GEIILC------DTC---PRAYHLCCLDPEL-----DETPEGKWSCPRCVS 58 (139)
Q Consensus 9 ~~~~~~C~vC~~~--g~ll~C------d~C---~~~~H~~Cl~P~l-----~~~p~~~W~C~~C~~ 58 (139)
......|+.|.+- +....| ..| ...|--.||.-.. +.+...+|.||.|..
T Consensus 4 ~~~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 4 SVNGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 3455689999873 334566 566 7777777765322 223567899999976
No 44
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=65.75 E-value=0.97 Score=24.07 Aligned_cols=28 Identities=14% Similarity=0.419 Sum_probs=17.4
Q ss_pred cccccccCceEEeccCCCCCcccccCCC
Q psy14605 15 CEVCQQGGEIILCDTCPRAYHLCCLDPE 42 (139)
Q Consensus 15 C~vC~~~g~ll~Cd~C~~~~H~~Cl~P~ 42 (139)
|.+|........--.|.-.||..|+...
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~ 28 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKW 28 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHH
Confidence 5566665444444467777888887643
No 45
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=64.93 E-value=5.8 Score=21.40 Aligned_cols=26 Identities=31% Similarity=0.894 Sum_probs=20.5
Q ss_pred cccccccc--Cc-eEEeccCCCCCccccc
Q psy14605 14 YCEVCQQG--GE-IILCDTCPRAYHLCCL 39 (139)
Q Consensus 14 ~C~vC~~~--g~-ll~Cd~C~~~~H~~Cl 39 (139)
.|.+|++. |. .-.|+.|.-..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 58889874 45 7789999988898874
No 46
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=64.22 E-value=1.4 Score=26.11 Aligned_cols=40 Identities=25% Similarity=0.671 Sum_probs=19.5
Q ss_pred ccccccc-CceEEec--cCCCCCcccccCCCCCCCCCCCcccccc
Q psy14605 15 CEVCQQG-GEIILCD--TCPRAYHLCCLDPELDETPEGKWSCPRC 56 (139)
Q Consensus 15 C~vC~~~-g~ll~Cd--~C~~~~H~~Cl~P~l~~~p~~~W~C~~C 56 (139)
|.+|.+- -.-+.|. .|+..+|.+|+.--+..... + .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~-~-~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSN-P-KCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCC-C-CCcCC
Confidence 5566663 2346787 69999999999754444322 2 68876
No 47
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=62.11 E-value=6.2 Score=23.47 Aligned_cols=30 Identities=30% Similarity=0.652 Sum_probs=23.1
Q ss_pred ccccccccccc-----CceEEeccCCCCCcccccC
Q psy14605 11 HQDYCEVCQQG-----GEIILCDTCPRAYHLCCLD 40 (139)
Q Consensus 11 ~~~~C~vC~~~-----g~ll~Cd~C~~~~H~~Cl~ 40 (139)
...+|.+|++. ..-+.|..|....|..|+.
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 34589999973 4688999999999999987
No 48
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=61.60 E-value=5.6 Score=24.83 Aligned_cols=29 Identities=34% Similarity=0.862 Sum_probs=24.2
Q ss_pred cccccccc--------CceEEeccCCCCCcccccCCC
Q psy14605 14 YCEVCQQG--------GEIILCDTCPRAYHLCCLDPE 42 (139)
Q Consensus 14 ~C~vC~~~--------g~ll~Cd~C~~~~H~~Cl~P~ 42 (139)
.|.+|+.. |.++-|..|+..|-....+|.
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~p~ 40 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICDECGAELEVVSLDPL 40 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCCCC
Confidence 68889862 679999999999998888873
No 49
>COG1773 Rubredoxin [Energy production and conversion]
Probab=60.39 E-value=6.1 Score=24.84 Aligned_cols=10 Identities=40% Similarity=1.348 Sum_probs=8.4
Q ss_pred CCcccccccc
Q psy14605 49 GKWSCPRCVS 58 (139)
Q Consensus 49 ~~W~C~~C~~ 58 (139)
.+|.||.|-.
T Consensus 35 d~w~CP~Cg~ 44 (55)
T COG1773 35 DDWVCPECGV 44 (55)
T ss_pred CccCCCCCCC
Confidence 4799999975
No 50
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=59.90 E-value=8 Score=35.41 Aligned_cols=45 Identities=24% Similarity=0.592 Sum_probs=29.8
Q ss_pred cccccccc--CceEEeccCCCCCc-ccccCCCCCCCCCCCccccccccC
Q psy14605 14 YCEVCQQG--GEIILCDTCPRAYH-LCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 14 ~C~vC~~~--g~ll~Cd~C~~~~H-~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
.|+.|+.. ....+|..|+...- ..|..-. ..+|.+.=||+.|-..
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~CG-~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGTSLTHKPCPQCG-TEVPVDEAHCPNCGAE 50 (645)
T ss_pred cCCCCCCcCCCCCccccccCCCCCCCcCCCCC-CCCCcccccccccCCc
Confidence 57777763 45667888876543 4565532 4466777899999554
No 51
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=59.43 E-value=6.4 Score=31.98 Aligned_cols=27 Identities=26% Similarity=0.791 Sum_probs=15.1
Q ss_pred cccccccccccc------------C-ceEEeccCCCCCcc
Q psy14605 10 EHQDYCEVCQQG------------G-EIILCDTCPRAYHL 36 (139)
Q Consensus 10 ~~~~~C~vC~~~------------g-~ll~Cd~C~~~~H~ 36 (139)
....+|+|||.. | ..+.|.-|...||.
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~ 209 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF 209 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE-
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee
Confidence 344799999962 3 58999999998885
No 52
>KOG1493|consensus
Probab=54.93 E-value=0.74 Score=31.07 Aligned_cols=30 Identities=33% Similarity=0.730 Sum_probs=21.2
Q ss_pred cCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 29 TCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 29 ~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
.|.-.||..|+.--+. .|...=.||.|+..
T Consensus 50 ~C~h~fh~hCI~~wl~-~~tsq~~CPmcRq~ 79 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLN-TPTSQGQCPMCRQT 79 (84)
T ss_pred HHHHHHHHHHHHHHhc-CccccccCCcchhe
Confidence 6667899999875433 44555689999754
No 53
>KOG1632|consensus
Probab=54.34 E-value=6.3 Score=33.27 Aligned_cols=39 Identities=28% Similarity=0.560 Sum_probs=31.6
Q ss_pred CceEEeccCCCCCcccc--cCCCCCCCC-CCCccccccccCC
Q psy14605 22 GEIILCDTCPRAYHLCC--LDPELDETP-EGKWSCPRCVSDG 60 (139)
Q Consensus 22 g~ll~Cd~C~~~~H~~C--l~P~l~~~p-~~~W~C~~C~~~~ 60 (139)
+.++-|+.|..+||..| ++.+....| ...|+|..|....
T Consensus 73 ~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~ 114 (345)
T KOG1632|consen 73 DLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQ 114 (345)
T ss_pred hhhhccccccccccccccccCchhhcCCccccccccccchhh
Confidence 36789999999999999 997766554 4689999997643
No 54
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=53.72 E-value=8.8 Score=21.83 Aligned_cols=27 Identities=30% Similarity=0.716 Sum_probs=18.3
Q ss_pred EeccCCCCCcccccCCCCCCCCCCCcccccccc
Q psy14605 26 LCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58 (139)
Q Consensus 26 ~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 58 (139)
.|..|++.||..=.- |..+..|..|-.
T Consensus 3 ~C~~Cg~~Yh~~~~p------P~~~~~Cd~cg~ 29 (36)
T PF05191_consen 3 ICPKCGRIYHIEFNP------PKVEGVCDNCGG 29 (36)
T ss_dssp EETTTTEEEETTTB--------SSTTBCTTTTE
T ss_pred CcCCCCCccccccCC------CCCCCccCCCCC
Confidence 688999999954332 445567888865
No 55
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=53.35 E-value=10 Score=31.63 Aligned_cols=27 Identities=26% Similarity=0.896 Sum_probs=21.4
Q ss_pred ccccccccccc------------C-ceEEeccCCCCCccc
Q psy14605 11 HQDYCEVCQQG------------G-EIILCDTCPRAYHLC 37 (139)
Q Consensus 11 ~~~~C~vC~~~------------g-~ll~Cd~C~~~~H~~ 37 (139)
+..+|+|||.. | ..+.|..|...||+.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~ 225 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV 225 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc
Confidence 56899999962 2 488999999998863
No 56
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=49.27 E-value=5.3 Score=31.26 Aligned_cols=50 Identities=18% Similarity=0.334 Sum_probs=32.3
Q ss_pred ccccccccccccCceEEeccCCCCCcccccCCCCCC------------CCCCCccccccccC
Q psy14605 10 EHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDE------------TPEGKWSCPRCVSD 59 (139)
Q Consensus 10 ~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~P~l~~------------~p~~~W~C~~C~~~ 59 (139)
+++-.|.+|.+.-.-..--.|+-.|+..|+...+.. ...+...||.|...
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~ 77 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc
Confidence 455679999986433333578888888898632211 02245789999764
No 57
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=48.87 E-value=10 Score=26.60 Aligned_cols=29 Identities=28% Similarity=0.789 Sum_probs=23.1
Q ss_pred cccccccccc-----CceEEeccCCCCCcccccC
Q psy14605 12 QDYCEVCQQG-----GEIILCDTCPRAYHLCCLD 40 (139)
Q Consensus 12 ~~~C~vC~~~-----g~ll~Cd~C~~~~H~~Cl~ 40 (139)
-+.|.+|+.. |+.+.|-.|+..|++.=++
T Consensus 35 ~daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig 68 (102)
T PF10080_consen 35 FDACEICGPKGYYQEGDQLVCKNCGVRFNLPTIG 68 (102)
T ss_pred EEeccccCCCceEEECCEEEEecCCCEEehhhcc
Confidence 3689999864 5789999999999875544
No 58
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=48.40 E-value=14 Score=30.71 Aligned_cols=28 Identities=25% Similarity=0.768 Sum_probs=21.4
Q ss_pred cccccccccccc-------------C-ceEEeccCCCCCccc
Q psy14605 10 EHQDYCEVCQQG-------------G-EIILCDTCPRAYHLC 37 (139)
Q Consensus 10 ~~~~~C~vC~~~-------------g-~ll~Cd~C~~~~H~~ 37 (139)
.+..+|+||+.. | ..+.|.-|...||+.
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~ 223 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV 223 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc
Confidence 345699999962 1 388999999999863
No 59
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=47.94 E-value=11 Score=23.05 Aligned_cols=10 Identities=40% Similarity=1.338 Sum_probs=8.4
Q ss_pred CccccccccC
Q psy14605 50 KWSCPRCVSD 59 (139)
Q Consensus 50 ~W~C~~C~~~ 59 (139)
+|.||.|...
T Consensus 34 ~w~CP~C~a~ 43 (50)
T cd00730 34 DWVCPVCGAG 43 (50)
T ss_pred CCCCCCCCCc
Confidence 7999999754
No 60
>KOG2114|consensus
Probab=47.16 E-value=7.9 Score=36.57 Aligned_cols=40 Identities=25% Similarity=0.777 Sum_probs=31.9
Q ss_pred ccccccccccCceEEec-cCCCCCcccccCCCCCCCCCCCcccccccc
Q psy14605 12 QDYCEVCQQGGEIILCD-TCPRAYHLCCLDPELDETPEGKWSCPRCVS 58 (139)
Q Consensus 12 ~~~C~vC~~~g~ll~Cd-~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 58 (139)
...|..|...=++-.-. .|.-+||+.|+. +++--||.|..
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e-------~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE-------DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc-------cCcccCCccch
Confidence 35799999876665554 799999999998 44567999986
No 61
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=46.84 E-value=2.7 Score=27.36 Aligned_cols=41 Identities=27% Similarity=0.750 Sum_probs=26.4
Q ss_pred ccccccccc-----------C--ceEEeccCCCCCcccccCCCCCCCCCCCccccccc
Q psy14605 13 DYCEVCQQG-----------G--EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57 (139)
Q Consensus 13 ~~C~vC~~~-----------g--~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~ 57 (139)
+.|.+|... + -.+.=..|+-.||..|+..-+... ..||.|+
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 348888863 1 133335799999999997655433 3888884
No 62
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=46.35 E-value=11 Score=33.19 Aligned_cols=17 Identities=18% Similarity=0.716 Sum_probs=7.5
Q ss_pred eEEeccCCCCCcccccC
Q psy14605 24 IILCDTCPRAYHLCCLD 40 (139)
Q Consensus 24 ll~Cd~C~~~~H~~Cl~ 40 (139)
|.+|..|...-...|+.
T Consensus 5 L~fC~~C~~irc~~c~~ 21 (483)
T PF05502_consen 5 LYFCEHCHKIRCPRCVS 21 (483)
T ss_pred ceecccccccCChhhcc
Confidence 44444444444444443
No 63
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=46.10 E-value=12 Score=21.59 Aligned_cols=29 Identities=31% Similarity=0.855 Sum_probs=23.6
Q ss_pred cccccccccc--C---ceEEeccCCCCCcccccC
Q psy14605 12 QDYCEVCQQG--G---EIILCDTCPRAYHLCCLD 40 (139)
Q Consensus 12 ~~~C~vC~~~--g---~ll~Cd~C~~~~H~~Cl~ 40 (139)
..+|.+|++. + .-+-|..|....|..|..
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~ 44 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCAD 44 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhc
Confidence 4579999873 2 577899999999999986
No 64
>KOG1829|consensus
Probab=45.70 E-value=4.6 Score=36.50 Aligned_cols=29 Identities=34% Similarity=0.780 Sum_probs=21.8
Q ss_pred eEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 24 IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 24 ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
..-|+.|..+||..|+.-. . -.||.|...
T Consensus 531 ~~rC~~C~avfH~~C~~r~--s-----~~CPrC~R~ 559 (580)
T KOG1829|consen 531 TRRCSTCLAVFHKKCLRRK--S-----PCCPRCERR 559 (580)
T ss_pred ceeHHHHHHHHHHHHHhcc--C-----CCCCchHHH
Confidence 4678999999999998722 1 129999754
No 65
>PRK11827 hypothetical protein; Provisional
Probab=44.77 E-value=14 Score=23.61 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=16.2
Q ss_pred ccccccccc------CceEEeccCCCCC
Q psy14605 13 DYCEVCQQG------GEIILCDTCPRAY 34 (139)
Q Consensus 13 ~~C~vC~~~------g~ll~Cd~C~~~~ 34 (139)
-.|++|++. .+-+.|..|..+|
T Consensus 9 LaCP~ckg~L~~~~~~~~Lic~~~~laY 36 (60)
T PRK11827 9 IACPVCNGKLWYNQEKQELICKLDNLAF 36 (60)
T ss_pred eECCCCCCcCeEcCCCCeEECCccCeec
Confidence 468888863 3456788888888
No 66
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=44.37 E-value=21 Score=27.46 Aligned_cols=19 Identities=37% Similarity=0.882 Sum_probs=16.0
Q ss_pred eEEeccCCCCCcccccCCC
Q psy14605 24 IILCDTCPRAYHLCCLDPE 42 (139)
Q Consensus 24 ll~Cd~C~~~~H~~Cl~P~ 42 (139)
|.-|..|.++||+.-|-|+
T Consensus 124 LFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 124 LFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred EEecCCccceeehhhCCCC
Confidence 5569999999999888765
No 67
>KOG0317|consensus
Probab=43.44 E-value=7.6 Score=32.21 Aligned_cols=50 Identities=22% Similarity=0.485 Sum_probs=37.3
Q ss_pred cccccccccccccCceEEeccCCCCCcccccCCCCCCCCCCCccccccccCCCC
Q psy14605 9 TEHQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPP 62 (139)
Q Consensus 9 ~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~~ 62 (139)
+.++..|.+|-..-.-.-|--|+-.|-++|+.......++ ||.|+.+..+
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e----CPlCR~~~~p 285 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE----CPLCREKFQP 285 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC----CCcccccCCC
Confidence 4566789999987655667888888888998765555443 9999876544
No 68
>PHA02929 N1R/p28-like protein; Provisional
Probab=42.82 E-value=8.5 Score=30.96 Aligned_cols=46 Identities=22% Similarity=0.571 Sum_probs=31.8
Q ss_pred ccccccccccccC---c-----eEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 10 EHQDYCEVCQQGG---E-----IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 10 ~~~~~C~vC~~~g---~-----ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
..+..|.+|...- . +..=..|.-.||..|+.+.+... -.||.|+..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~----~tCPlCR~~ 225 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK----NTCPVCRTP 225 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC----CCCCCCCCE
Confidence 3457899998751 1 12334788899999998765443 369999864
No 69
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=42.73 E-value=77 Score=22.01 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14605 104 YDRDREKEKKEKEEARIYGQMARQILLALFLGTG 137 (139)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (139)
....-.+.+.+....|.--++.+.|+-|+.+|+|
T Consensus 56 ~~~~l~~~~~~lk~~r~~~~v~k~v~q~lI~gSg 89 (106)
T PF05837_consen 56 LSEKLEKLEKELKKSRQRWRVMKNVFQALIVGSG 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444455556666666666788899999999998
No 70
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=41.37 E-value=5.3 Score=26.10 Aligned_cols=20 Identities=30% Similarity=0.801 Sum_probs=18.3
Q ss_pred ceEEeccCCCCCcccccCCC
Q psy14605 23 EIILCDTCPRAYHLCCLDPE 42 (139)
Q Consensus 23 ~ll~Cd~C~~~~H~~Cl~P~ 42 (139)
-|+.|-+|+..-|-.|++|.
T Consensus 42 AMi~Cq~CGAFCHDDCIgps 61 (69)
T PF13922_consen 42 AMIMCQGCGAFCHDDCIGPS 61 (69)
T ss_pred HHHHHhhccchhccccccHH
Confidence 59999999999999999975
No 71
>KOG1734|consensus
Probab=41.32 E-value=8.1 Score=32.05 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=31.3
Q ss_pred cccccccccccccCc----------eEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 9 TEHQDYCEVCQQGGE----------IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 9 ~~~~~~C~vC~~~g~----------ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
..++..|.||++.=+ -+.==.|.-.||-.|...- -+-...=.||-|.++
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGW--civGKkqtCPYCKek 279 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGW--CIVGKKQTCPYCKEK 279 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhh--eeecCCCCCchHHHH
Confidence 356789999997411 1111258899999998732 121224579999875
No 72
>PF12773 DZR: Double zinc ribbon
Probab=40.66 E-value=16 Score=21.44 Aligned_cols=11 Identities=36% Similarity=0.900 Sum_probs=6.4
Q ss_pred CCccccccccC
Q psy14605 49 GKWSCPRCVSD 59 (139)
Q Consensus 49 ~~W~C~~C~~~ 59 (139)
..++|+.|-..
T Consensus 28 ~~~~C~~Cg~~ 38 (50)
T PF12773_consen 28 SKKICPNCGAE 38 (50)
T ss_pred CCCCCcCCcCC
Confidence 34666666554
No 73
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=40.64 E-value=11 Score=20.01 Aligned_cols=14 Identities=50% Similarity=1.369 Sum_probs=10.7
Q ss_pred CCCccccccccCCC
Q psy14605 48 EGKWSCPRCVSDGP 61 (139)
Q Consensus 48 ~~~W~C~~C~~~~~ 61 (139)
.|.|.|+.|.....
T Consensus 2 ~g~W~C~~C~~~N~ 15 (30)
T PF00641_consen 2 EGDWKCPSCTFMNP 15 (30)
T ss_dssp SSSEEETTTTEEEE
T ss_pred CcCccCCCCcCCch
Confidence 47899999976543
No 74
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=40.21 E-value=13 Score=18.85 Aligned_cols=12 Identities=42% Similarity=1.251 Sum_probs=9.2
Q ss_pred CCccccccccCC
Q psy14605 49 GKWSCPRCVSDG 60 (139)
Q Consensus 49 ~~W~C~~C~~~~ 60 (139)
++|.|+.|....
T Consensus 1 g~W~C~~C~~~N 12 (26)
T smart00547 1 GDWECPACTFLN 12 (26)
T ss_pred CcccCCCCCCcC
Confidence 579999996543
No 75
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=39.36 E-value=8.2 Score=22.02 Aligned_cols=29 Identities=28% Similarity=0.684 Sum_probs=23.3
Q ss_pred cccccccccc--C--ceEEeccCCCCCcccccC
Q psy14605 12 QDYCEVCQQG--G--EIILCDTCPRAYHLCCLD 40 (139)
Q Consensus 12 ~~~C~vC~~~--g--~ll~Cd~C~~~~H~~Cl~ 40 (139)
..+|.+|++. + ..+-|..|....|..|+.
T Consensus 11 ~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~ 43 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAE 43 (49)
T ss_pred CCCccccccccCcCCCCcCCCCCCchHHHHHHh
Confidence 4579999873 2 367899999999999986
No 76
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=39.00 E-value=21 Score=19.30 Aligned_cols=21 Identities=24% Similarity=0.684 Sum_probs=11.5
Q ss_pred cccccccccc------CceEEeccCCC
Q psy14605 12 QDYCEVCQQG------GEIILCDTCPR 32 (139)
Q Consensus 12 ~~~C~vC~~~------g~ll~Cd~C~~ 32 (139)
..+|..|+.+ |....|..|+.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 4689999874 56777887765
No 77
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=38.70 E-value=19 Score=33.00 Aligned_cols=34 Identities=26% Similarity=0.660 Sum_probs=25.4
Q ss_pred ceEEecc-CCCCCcccccCCCCCCCCCCCccccccccCC
Q psy14605 23 EIILCDT-CPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60 (139)
Q Consensus 23 ~ll~Cd~-C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~ 60 (139)
+-+.|.. |...+.++|+-.+- ...|.||.|....
T Consensus 52 epv~C~~pC~avlnpyC~id~r----~~~W~CpfCnqrn 86 (755)
T COG5047 52 EPVKCTAPCKAVLNPYCHIDER----NQSWICPFCNQRN 86 (755)
T ss_pred CCceecccchhhcCcceeeccC----CceEecceecCCC
Confidence 4567877 99999999986332 2359999997654
No 78
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=38.45 E-value=21 Score=19.55 Aligned_cols=11 Identities=36% Similarity=1.174 Sum_probs=8.6
Q ss_pred CCccccccccC
Q psy14605 49 GKWSCPRCVSD 59 (139)
Q Consensus 49 ~~W~C~~C~~~ 59 (139)
.+|.||.|-..
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 56999999653
No 79
>KOG4323|consensus
Probab=37.51 E-value=21 Score=31.47 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=35.9
Q ss_pred cccccccccccc-----CceEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 10 EHQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 10 ~~~~~C~vC~~~-----g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
.....|.+|... ..++.|+.|..+||..|..|.... .+.|.+..|+..
T Consensus 81 ~~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~--~~~~~~~~c~~~ 133 (464)
T KOG4323|consen 81 SSELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPS--LDIGESTECVFP 133 (464)
T ss_pred ccccCCcccccccccCchhhhhhhhhccCcccccCccCcCc--CCcccccccccc
Confidence 444567788753 358889999999999999876433 367888888764
No 80
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=37.50 E-value=7.7 Score=22.14 Aligned_cols=10 Identities=30% Similarity=0.986 Sum_probs=7.6
Q ss_pred CccccccccC
Q psy14605 50 KWSCPRCVSD 59 (139)
Q Consensus 50 ~W~C~~C~~~ 59 (139)
.|+|+.|-..
T Consensus 32 ~~~C~~CGE~ 41 (46)
T TIGR03831 32 ALVCPQCGEE 41 (46)
T ss_pred ccccccCCCE
Confidence 5889998654
No 81
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=37.34 E-value=19 Score=33.00 Aligned_cols=10 Identities=30% Similarity=0.833 Sum_probs=7.6
Q ss_pred cccccccCCC
Q psy14605 52 SCPRCVSDGP 61 (139)
Q Consensus 52 ~C~~C~~~~~ 61 (139)
.|+.|..+..
T Consensus 97 lc~~c~~~~~ 106 (715)
T COG1107 97 LCPECRRKPK 106 (715)
T ss_pred cChhHhhCCc
Confidence 7999987644
No 82
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=36.03 E-value=29 Score=33.76 Aligned_cols=47 Identities=28% Similarity=0.761 Sum_probs=35.9
Q ss_pred cccccccccccc------C-ceEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 10 EHQDYCEVCQQG------G-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 10 ~~~~~C~vC~~~------g-~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
.+..+|.+|++. | -.+.|..|.-..--.|+. -+..+|.=.||.|...
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE---YEr~eG~q~CPqCktr 68 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE---YERKDGNQSCPQCKTK 68 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchhh---hhhhcCCccCCccCCc
Confidence 345699999984 3 378899998888888885 3345678899999654
No 83
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=35.88 E-value=26 Score=19.21 Aligned_cols=19 Identities=32% Similarity=1.018 Sum_probs=8.5
Q ss_pred ccccccccc-----CceEEeccCC
Q psy14605 13 DYCEVCQQG-----GEIILCDTCP 31 (139)
Q Consensus 13 ~~C~vC~~~-----g~ll~Cd~C~ 31 (139)
..|..|+.. |.++.|..|.
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~C~ 26 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPECG 26 (30)
T ss_dssp ---TTT-----EE-SSSEEETTTT
T ss_pred CCCCCCCCcceeccCCEEeCCccc
Confidence 357777763 4566677664
No 84
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=35.29 E-value=16 Score=25.75 Aligned_cols=46 Identities=20% Similarity=0.423 Sum_probs=30.2
Q ss_pred ccccccccccc-----CceEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 11 HQDYCEVCQQG-----GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 11 ~~~~C~vC~~~-----g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
++..|..|+.+ +.-..|..|...+-..|-.- ......|.|..|.+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---SKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---TSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---CCCCCCEEChhhHHH
Confidence 55689999874 23467888877666666552 234568999999754
No 85
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=35.24 E-value=18 Score=18.42 Aligned_cols=6 Identities=33% Similarity=1.060 Sum_probs=2.4
Q ss_pred cccccc
Q psy14605 15 CEVCQQ 20 (139)
Q Consensus 15 C~vC~~ 20 (139)
|..|+.
T Consensus 2 Cp~CG~ 7 (23)
T PF13240_consen 2 CPNCGA 7 (23)
T ss_pred CcccCC
Confidence 344443
No 86
>KOG3799|consensus
Probab=34.65 E-value=12 Score=27.95 Aligned_cols=49 Identities=18% Similarity=0.457 Sum_probs=32.4
Q ss_pred cccccccccccc----CceEEeccCCCCCcccccCCCCCCCCCCCcccccccc
Q psy14605 10 EHQDYCEVCQQG----GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58 (139)
Q Consensus 10 ~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 58 (139)
..+..|.+|.+. |---.|..|..-|-..|-+-.......-.|.|..|..
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRK 115 (169)
T ss_pred CcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcH
Confidence 445689999984 3344577777777677766432222345799999975
No 87
>PLN02436 cellulose synthase A
Probab=34.43 E-value=31 Score=33.61 Aligned_cols=46 Identities=26% Similarity=0.749 Sum_probs=35.5
Q ss_pred ccccccccccc------C-ceEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 11 HQDYCEVCQQG------G-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 11 ~~~~C~vC~~~------g-~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
+..+|.+|++. | -.+.|..|.-..-..|+. -...+|.=.||.|...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye---yer~eg~~~Cpqckt~ 87 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE---YERREGNQACPQCKTR 87 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhh---hhhhcCCccCcccCCc
Confidence 44689999984 3 378899998888888885 3345678899999764
No 88
>PLN02400 cellulose synthase
Probab=34.18 E-value=42 Score=32.73 Aligned_cols=46 Identities=24% Similarity=0.748 Sum_probs=35.1
Q ss_pred ccccccccccc------C-ceEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 11 HQDYCEVCQQG------G-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 11 ~~~~C~vC~~~------g-~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
+..+|.+|++. | -.+.|..|.-..--.|+. -+..+|.=.||.|...
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE---YERkeGnq~CPQCkTr 87 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE---YERKDGTQCCPQCKTR 87 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhh---eecccCCccCcccCCc
Confidence 44689999984 3 388899998877778885 3345678899999654
No 89
>PF12472 DUF3693: Phage related protein; InterPro: IPR021096 This entry is represented by Vibrio phage VSK, Orf152. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=33.29 E-value=26 Score=22.01 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=12.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHH
Q psy14605 111 EKKEKEEAR-IYGQMARQILL 130 (139)
Q Consensus 111 ~~~~~~~~~-~~~~~~~~~~~ 130 (139)
|+.+-.+.| +|++|++++=-
T Consensus 7 era~~~~~k~~W~~i~kkl~~ 27 (60)
T PF12472_consen 7 ERAESPEEKAAWASIAKKLNG 27 (60)
T ss_pred hccCChHHHHHHHHHHHHHHH
Confidence 334444455 59999998643
No 90
>KOG2879|consensus
Probab=32.46 E-value=27 Score=28.94 Aligned_cols=50 Identities=20% Similarity=0.464 Sum_probs=32.7
Q ss_pred ccccccccccccCceEEecc-CCCCCcccccCCCCCCCCCCCccccccccCCC
Q psy14605 10 EHQDYCEVCQQGGEIILCDT-CPRAYHLCCLDPELDETPEGKWSCPRCVSDGP 61 (139)
Q Consensus 10 ~~~~~C~vC~~~g~ll~Cd~-C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~ 61 (139)
..+..|.+|+...-+-.-.+ |.-.|-.+|+.-.. .-+....||.|-....
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~--~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSR--LWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhh--cchhhcccCccCCCCc
Confidence 34567999998765555554 66677777876321 2233578999987654
No 91
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=32.22 E-value=32 Score=30.21 Aligned_cols=45 Identities=27% Similarity=0.537 Sum_probs=29.6
Q ss_pred cccccccC------ceEEeccCCCCCcccccCCCC--------CC---CCCCCccccccccC
Q psy14605 15 CEVCQQGG------EIILCDTCPRAYHLCCLDPEL--------DE---TPEGKWSCPRCVSD 59 (139)
Q Consensus 15 C~vC~~~g------~ll~Cd~C~~~~H~~Cl~P~l--------~~---~p~~~W~C~~C~~~ 59 (139)
|.+|.+-+ .-|-||.|+-+-|+.|.--.. .. ..++.++|..|-..
T Consensus 131 C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 131 CCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred ccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCCh
Confidence 55566521 367799999999999974311 11 12347999999654
No 92
>KOG4215|consensus
Probab=31.90 E-value=22 Score=30.80 Aligned_cols=25 Identities=28% Similarity=0.858 Sum_probs=19.1
Q ss_pred cccccccccccc--C---ceEEeccCCCCC
Q psy14605 10 EHQDYCEVCQQG--G---EIILCDTCPRAY 34 (139)
Q Consensus 10 ~~~~~C~vC~~~--g---~ll~Cd~C~~~~ 34 (139)
....+|.+|++. | ..+.||+|...|
T Consensus 17 ~~~~~CaICGDkaTGKHYGA~SCdGCKGFF 46 (432)
T KOG4215|consen 17 GVAEFCAICGDKATGKHYGAISCDGCKGFF 46 (432)
T ss_pred cccchhheeCCcccccccceeecCcchHHH
Confidence 345799999983 4 388999997654
No 93
>PRK00420 hypothetical protein; Validated
Probab=31.84 E-value=26 Score=25.08 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=13.6
Q ss_pred CCCCCCCCccccccccCCC
Q psy14605 43 LDETPEGKWSCPRCVSDGP 61 (139)
Q Consensus 43 l~~~p~~~W~C~~C~~~~~ 61 (139)
+.....|.-|||.|-....
T Consensus 33 Lf~lk~g~~~Cp~Cg~~~~ 51 (112)
T PRK00420 33 LFELKDGEVVCPVHGKVYI 51 (112)
T ss_pred ceecCCCceECCCCCCeee
Confidence 4444678899999977543
No 94
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=31.47 E-value=10 Score=22.00 Aligned_cols=28 Identities=29% Similarity=0.799 Sum_probs=10.8
Q ss_pred cCCCCCcccccCCCCCCCCCCCcccccc
Q psy14605 29 TCPRAYHLCCLDPELDETPEGKWSCPRC 56 (139)
Q Consensus 29 ~C~~~~H~~Cl~P~l~~~p~~~W~C~~C 56 (139)
.|+-.|=..|+...+.......+.||.|
T Consensus 15 ~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 15 PCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 3444444455543333332223667765
No 95
>KOG1986|consensus
Probab=31.26 E-value=27 Score=32.48 Aligned_cols=34 Identities=21% Similarity=0.574 Sum_probs=25.9
Q ss_pred ceEEeccCCCCCcccccCCCCCCCCCCCccccccccCC
Q psy14605 23 EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60 (139)
Q Consensus 23 ~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~ 60 (139)
+=+.|-.|...+..+|..-. -.+.|.|+.|....
T Consensus 52 ~P~~C~~C~AvlNPyc~vd~----~a~~W~CpfC~qrN 85 (745)
T KOG1986|consen 52 DPLRCSKCGAVLNPYCSVDF----RAKSWICPFCNQRN 85 (745)
T ss_pred CCchhccchhhcCcceeecc----cCceEeccccccCC
Confidence 45678899999999998632 13469999997654
No 96
>PF15616 TerY-C: TerY-C metal binding domain
Probab=29.55 E-value=39 Score=24.84 Aligned_cols=38 Identities=34% Similarity=0.897 Sum_probs=28.7
Q ss_pred cccccccccCceEEeccCCCCCcccccCCCCCCCCCCCccccccccCC
Q psy14605 13 DYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60 (139)
Q Consensus 13 ~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~ 60 (139)
+-|+-|+..-.+..| +|.+ +.|++-+ +.-.||.|-...
T Consensus 78 PgCP~CGn~~~fa~C-~CGk---l~Ci~g~------~~~~CPwCg~~g 115 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVC-GCGK---LFCIDGE------GEVTCPWCGNEG 115 (131)
T ss_pred CCCCCCcChhcEEEe-cCCC---EEEeCCC------CCEECCCCCCee
Confidence 669999988778888 7987 5687732 256899997653
No 97
>PF03380 DUF282: Caenorhabditis protein of unknown function, DUF282; InterPro: IPR005044 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=29.48 E-value=43 Score=19.57 Aligned_cols=16 Identities=25% Similarity=0.783 Sum_probs=13.6
Q ss_pred eccCCCCCcccccCCC
Q psy14605 27 CDTCPRAYHLCCLDPE 42 (139)
Q Consensus 27 Cd~C~~~~H~~Cl~P~ 42 (139)
|..|...|...|.+..
T Consensus 2 Cs~C~~iYdt~CqG~g 17 (39)
T PF03380_consen 2 CSVCSKIYDTTCQGFG 17 (39)
T ss_pred CcccccccCCCCccCC
Confidence 7889999999999843
No 98
>PRK04023 DNA polymerase II large subunit; Validated
Probab=28.37 E-value=34 Score=33.21 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=17.8
Q ss_pred ccccccccccccCceEEeccCCCC
Q psy14605 10 EHQDYCEVCQQGGEIILCDTCPRA 33 (139)
Q Consensus 10 ~~~~~C~vC~~~g~ll~Cd~C~~~ 33 (139)
....+|..|+..+....|..|+..
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~ 647 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTH 647 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCC
Confidence 344679999988777778888763
No 99
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=27.91 E-value=40 Score=21.53 Aligned_cols=22 Identities=32% Similarity=0.782 Sum_probs=15.9
Q ss_pred ccccccccc------CceEEeccCCCCC
Q psy14605 13 DYCEVCQQG------GEIILCDTCPRAY 34 (139)
Q Consensus 13 ~~C~vC~~~------g~ll~Cd~C~~~~ 34 (139)
-.|++|++. .+.+.|-.|..+|
T Consensus 9 LaCP~~kg~L~~~~~~~~L~c~~~~~aY 36 (60)
T COG2835 9 LACPVCKGPLVYDEEKQELICPRCKLAY 36 (60)
T ss_pred eeccCcCCcceEeccCCEEEecccCcee
Confidence 468888864 4577788888877
No 100
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=27.80 E-value=30 Score=20.77 Aligned_cols=32 Identities=31% Similarity=0.698 Sum_probs=14.4
Q ss_pred EEeccCCCCCccc-ccCCCCCCCCCCCccccccc
Q psy14605 25 ILCDTCPRAYHLC-CLDPELDETPEGKWSCPRCV 57 (139)
Q Consensus 25 l~Cd~C~~~~H~~-Cl~P~l~~~p~~~W~C~~C~ 57 (139)
|.||.|.++=.+. -+.+.....|+ .|+|..-.
T Consensus 4 VQCd~C~KWR~lp~~~~~~~~~~~d-~W~C~~n~ 36 (50)
T PF07496_consen 4 VQCDSCLKWRRLPEEVDPIREELPD-PWYCSMNP 36 (50)
T ss_dssp EE-TTT--EEEE-CCHHCTSCCSST-T--GGGSS
T ss_pred EECCCCCceeeCChhhCcccccCCC-eEEcCCCC
Confidence 6788888765543 22221234555 89998744
No 101
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.77 E-value=16 Score=29.98 Aligned_cols=49 Identities=22% Similarity=0.455 Sum_probs=36.6
Q ss_pred cccccccccccCceEEeccCCCCCcccccCCCCCCCCCCCccccccccCCC
Q psy14605 11 HQDYCEVCQQGGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGP 61 (139)
Q Consensus 11 ~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~ 61 (139)
.+-.|.+|-..-....|-.|+-.|-..|+...+.. ...=+||.|+.+-.
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~--~k~~~CplCRak~~ 262 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTK--KKYEFCPLCRAKVY 262 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHh--hccccCchhhhhcc
Confidence 35569999998888889999999999998753222 12347999987643
No 102
>PLN02189 cellulose synthase
Probab=27.74 E-value=45 Score=32.36 Aligned_cols=46 Identities=28% Similarity=0.736 Sum_probs=35.4
Q ss_pred ccccccccccc------C-ceEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 11 HQDYCEVCQQG------G-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 11 ~~~~C~vC~~~------g-~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
+...|.+|++. | -.+.|..|.-..--.|+. -+..+|.=.||.|...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye---yer~eg~q~CpqCkt~ 85 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE---YERREGTQNCPQCKTR 85 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhh---hhhhcCCccCcccCCc
Confidence 44689999984 3 488899998888888885 3345678899999754
No 103
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=26.81 E-value=26 Score=31.56 Aligned_cols=32 Identities=38% Similarity=0.926 Sum_probs=25.8
Q ss_pred cccccccccc-cCceEEec--cCCCCCcccccCCC
Q psy14605 11 HQDYCEVCQQ-GGEIILCD--TCPRAYHLCCLDPE 42 (139)
Q Consensus 11 ~~~~C~vC~~-~g~ll~Cd--~C~~~~H~~Cl~P~ 42 (139)
+...|.+|.. +|.-+.|. .|-++||..|....
T Consensus 302 wkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArra 336 (669)
T COG5141 302 WKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARRA 336 (669)
T ss_pred HhheeeEEcccCcceeeecccchhhhhhhhhhhhc
Confidence 3456999997 57788896 79999999998643
No 104
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=26.42 E-value=40 Score=18.75 Aligned_cols=22 Identities=23% Similarity=0.718 Sum_probs=11.8
Q ss_pred cccccccccC------ceEEeccCCCCC
Q psy14605 13 DYCEVCQQGG------EIILCDTCPRAY 34 (139)
Q Consensus 13 ~~C~vC~~~g------~ll~Cd~C~~~~ 34 (139)
..|..|+..+ +...|-.|...|
T Consensus 4 ~~C~~C~~~~i~~~~~~~~~C~~Cg~~~ 31 (33)
T PF08792_consen 4 KKCSKCGGNGIVNKEDDYEVCIFCGSSF 31 (33)
T ss_pred eEcCCCCCCeEEEecCCeEEcccCCcEe
Confidence 4566676653 234555555543
No 105
>PLN02195 cellulose synthase A
Probab=25.48 E-value=50 Score=31.84 Aligned_cols=48 Identities=27% Similarity=0.639 Sum_probs=36.8
Q ss_pred ccccccccccc------C-ceEEeccCCCCCcccccCCCCCCCCCCCccccccccCCC
Q psy14605 11 HQDYCEVCQQG------G-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGP 61 (139)
Q Consensus 11 ~~~~C~vC~~~------g-~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~ 61 (139)
+..+|.+|++. | -.+.|..|.-..--.|+. -+..+|.=.||.|.....
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye---yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLE---YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhh---hhhhcCCccCCccCCccc
Confidence 34589999982 3 388899998888888885 334568889999987655
No 106
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=24.79 E-value=24 Score=20.22 Aligned_cols=32 Identities=19% Similarity=0.513 Sum_probs=15.4
Q ss_pred eEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 24 IILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 24 ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
.+-|..|....-.+|..-. ....|.|+.|...
T Consensus 2 p~rC~~C~aylNp~~~~~~----~~~~w~C~~C~~~ 33 (40)
T PF04810_consen 2 PVRCRRCRAYLNPFCQFDD----GGKTWICNFCGTK 33 (40)
T ss_dssp S-B-TTT--BS-TTSEEET----TTTEEEETTT--E
T ss_pred ccccCCCCCEECCcceEcC----CCCEEECcCCCCc
Confidence 3457777766655554311 2347999999764
No 107
>KOG3896|consensus
Probab=24.68 E-value=71 Score=27.52 Aligned_cols=36 Identities=25% Similarity=0.697 Sum_probs=23.8
Q ss_pred CceEEeccCCCCCcccccCCCCCCCCCCCccccccccCCCC
Q psy14605 22 GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPP 62 (139)
Q Consensus 22 g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~~ 62 (139)
.+|++|-.|.+.--..|+.--+ ..-|||.|.++...
T Consensus 22 ~~L~FCRyC~klrc~~Cv~hEv-----dshfCp~CLEn~ps 57 (449)
T KOG3896|consen 22 PDLVFCRYCFKLRCDDCVLHEV-----DSHFCPRCLENSPS 57 (449)
T ss_pred cceeeeeccccccccccccccc-----ccccchhhccCCCc
Confidence 4789999998766666665222 34578888766544
No 108
>KOG4218|consensus
Probab=24.40 E-value=28 Score=30.00 Aligned_cols=27 Identities=22% Similarity=0.821 Sum_probs=20.4
Q ss_pred cccccccccccccc--C---ceEEeccCCCCC
Q psy14605 8 QTEHQDYCEVCQQG--G---EIILCDTCPRAY 34 (139)
Q Consensus 8 ~~~~~~~C~vC~~~--g---~ll~Cd~C~~~~ 34 (139)
+++.+..|+||++. | .|+-|..|...|
T Consensus 11 dedl~ElCPVCGDkVSGYHYGLLTCESCKGFF 42 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKVSGYHYGLLTCESCKGFF 42 (475)
T ss_pred ccccccccccccCccccceeeeeehhhhhhHH
Confidence 34556789999983 3 599999997665
No 109
>KOG1952|consensus
Probab=24.06 E-value=20 Score=34.04 Aligned_cols=47 Identities=26% Similarity=0.748 Sum_probs=33.9
Q ss_pred ccccccccc----CceEEeccCCCCCcccccCCCCCCC---CCCCccccccccC
Q psy14605 13 DYCEVCQQG----GEIILCDTCPRAYHLCCLDPELDET---PEGKWSCPRCVSD 59 (139)
Q Consensus 13 ~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~P~l~~~---p~~~W~C~~C~~~ 59 (139)
..|.||... ..+-.|..|-..||+.|+.-.-... -...|-||.|...
T Consensus 192 yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 192 YECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred eEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 459999873 4578899999999999986321111 1246999999843
No 110
>KOG2932|consensus
Probab=24.00 E-value=40 Score=28.60 Aligned_cols=37 Identities=30% Similarity=0.844 Sum_probs=19.6
Q ss_pred ccccccccc----CceEEeccCCCCCcccccCCCCCCCCCCCcccccccc
Q psy14605 13 DYCEVCQQG----GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVS 58 (139)
Q Consensus 13 ~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 58 (139)
-+|..|..+ |.||-|+ |.+|+.=.. .+.+=.|+.|..
T Consensus 91 HfCd~Cd~PI~IYGRmIPCk------HvFCl~CAr---~~~dK~Cp~C~d 131 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCK------HVFCLECAR---SDSDKICPLCDD 131 (389)
T ss_pred EeecccCCcceeeecccccc------hhhhhhhhh---cCccccCcCccc
Confidence 356666654 5555554 555654221 122457888854
No 111
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=23.82 E-value=47 Score=19.98 Aligned_cols=11 Identities=36% Similarity=1.196 Sum_probs=6.9
Q ss_pred CCccccccccC
Q psy14605 49 GKWSCPRCVSD 59 (139)
Q Consensus 49 ~~W~C~~C~~~ 59 (139)
.+|.||.|...
T Consensus 33 ~~w~CP~C~a~ 43 (47)
T PF00301_consen 33 DDWVCPVCGAP 43 (47)
T ss_dssp TT-B-TTTSSB
T ss_pred CCCcCcCCCCc
Confidence 46999999764
No 112
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=23.69 E-value=13 Score=22.34 Aligned_cols=41 Identities=27% Similarity=0.791 Sum_probs=23.2
Q ss_pred ccccccc---cCc-eE-Eec--cCCCCCcccccCCCCCCCCCCCcccccc
Q psy14605 14 YCEVCQQ---GGE-II-LCD--TCPRAYHLCCLDPELDETPEGKWSCPRC 56 (139)
Q Consensus 14 ~C~vC~~---~g~-ll-~Cd--~C~~~~H~~Cl~P~l~~~p~~~W~C~~C 56 (139)
+|.+|.. +++ ++ .|. +--+.+|..|+..-+... +.-.|+.|
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~--~~~~C~iC 48 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINES--GNKTCEIC 48 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHc--CCCcCCCC
Confidence 4777876 222 22 232 223679999998654332 23478776
No 113
>KOG0956|consensus
Probab=23.57 E-value=36 Score=31.85 Aligned_cols=47 Identities=23% Similarity=0.663 Sum_probs=30.3
Q ss_pred cccccccccC--------ceEEec--cCCCCCcccccCCC-CC-----CCCCCCccccccccC
Q psy14605 13 DYCEVCQQGG--------EIILCD--TCPRAYHLCCLDPE-LD-----ETPEGKWSCPRCVSD 59 (139)
Q Consensus 13 ~~C~vC~~~g--------~ll~Cd--~C~~~~H~~Cl~P~-l~-----~~p~~~W~C~~C~~~ 59 (139)
..|.||...| --+-|. +|..+||+.|..-. |- ...+.-=||-.|...
T Consensus 118 KtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~H 180 (900)
T KOG0956|consen 118 KTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYH 180 (900)
T ss_pred ceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHH
Confidence 5699998754 244563 78899999998642 21 112234688888653
No 114
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=23.10 E-value=9 Score=25.84 Aligned_cols=48 Identities=25% Similarity=0.690 Sum_probs=20.3
Q ss_pred ccccccccccccc------C-ceEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 9 TEHQDYCEVCQQG------G-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 9 ~~~~~~C~vC~~~------g-~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
..+..+|.+|++. | -.+.|..|....--.|+.- ....|.=.||.|...
T Consensus 6 ~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEY---Erkeg~q~CpqCkt~ 60 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEY---ERKEGNQVCPQCKTR 60 (80)
T ss_dssp --SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHH---HHHTS-SB-TTT--B
T ss_pred hcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHH---HhhcCcccccccCCC
Confidence 4456799999973 3 3788999977666667652 233566789999754
No 115
>KOG3092|consensus
Probab=23.04 E-value=70 Score=25.35 Aligned_cols=34 Identities=35% Similarity=0.649 Sum_probs=21.7
Q ss_pred cCCCCCc--ccccCCCCCCCCCC---CccccccccCCCC
Q psy14605 29 TCPRAYH--LCCLDPELDETPEG---KWSCPRCVSDGPP 62 (139)
Q Consensus 29 ~C~~~~H--~~Cl~P~l~~~p~~---~W~C~~C~~~~~~ 62 (139)
.||++|- +.++-..|..+|.. .-|||.|.....+
T Consensus 108 ~CPRV~C~~q~~LPvGLsDipg~~~VklYCP~C~dvY~P 146 (216)
T KOG3092|consen 108 RCPRVYCCGQPVLPVGLSDIPGKSTVKLYCPSCEDVYIP 146 (216)
T ss_pred cCCcccccCCccccccccCCCCcceEEEeCCCccccccc
Confidence 6888664 23333345566653 6899999877655
No 116
>PHA02862 5L protein; Provisional
Probab=22.96 E-value=18 Score=27.34 Aligned_cols=48 Identities=19% Similarity=0.428 Sum_probs=33.6
Q ss_pred ccccccccccCc--eEE--eccCCCCCcccccCCCCCCCCCCCccccccccCCC
Q psy14605 12 QDYCEVCQQGGE--IIL--CDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGP 61 (139)
Q Consensus 12 ~~~C~vC~~~g~--ll~--Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~ 61 (139)
.+.|.+|..+++ .-. |.+--+.-|..|+.--+. +++.=+|+.|..+..
T Consensus 2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn--~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWIN--YSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCCcccccccCcchhHHHHHHHHHHh--cCCCcCccCCCCeEE
Confidence 357899988653 222 456678899999986553 356679999976543
No 117
>KOG4718|consensus
Probab=22.78 E-value=16 Score=29.23 Aligned_cols=47 Identities=21% Similarity=0.436 Sum_probs=30.8
Q ss_pred ccccccccccccC-ceEEeccCCCCCcccccCCCCCCCCCCCccccccc
Q psy14605 10 EHQDYCEVCQQGG-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCV 57 (139)
Q Consensus 10 ~~~~~C~vC~~~g-~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~ 57 (139)
++-..|..|+.-- ..+-|.+|+--||..|..--+... +--|.|..|.
T Consensus 179 dnlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~-~~cphc~d~w 226 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRR-DICPHCGDLW 226 (235)
T ss_pred HHHHHHhHhHHHhheeeccCcccchhhhHHHHHHhccc-CcCCchhccc
Confidence 3456799998742 456799999999999987444332 2234444443
No 118
>KOG1844|consensus
Probab=22.73 E-value=57 Score=28.27 Aligned_cols=41 Identities=27% Similarity=0.514 Sum_probs=31.3
Q ss_pred cCceEEeccCCCCCcccccCCCCCCCCCCCccccccccCCCC
Q psy14605 21 GGEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGPP 62 (139)
Q Consensus 21 ~g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~~ 62 (139)
.|-++.|+.|+.+=|..|++..-... .....|..|......
T Consensus 98 ~g~~i~c~~c~~Wqh~~C~g~~~~~~-p~~y~c~~c~~~~~~ 138 (508)
T KOG1844|consen 98 EGLMIQCDWCGRWQHKICCGSFKSTK-PDKYVCEICTPRNKE 138 (508)
T ss_pred CceeeCCcccCcccCceeeeecCCCC-chhceeeeecccccc
Confidence 35599999999999999999654433 356889999765443
No 119
>PF14369 zf-RING_3: zinc-finger
Probab=22.71 E-value=65 Score=18.03 Aligned_cols=30 Identities=27% Similarity=0.680 Sum_probs=16.0
Q ss_pred EEeccCCCCCcccccCCCCCCCCCCCccccccccCCC
Q psy14605 25 ILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDGP 61 (139)
Q Consensus 25 l~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~ 61 (139)
.+|..|.+..+..= .+...-.||.|....+
T Consensus 3 ywCh~C~~~V~~~~-------~~~~~~~CP~C~~gFv 32 (35)
T PF14369_consen 3 YWCHQCNRFVRIAP-------SPDSDVACPRCHGGFV 32 (35)
T ss_pred EeCccCCCEeEeCc-------CCCCCcCCcCCCCcEe
Confidence 46777777654211 1112226999976543
No 120
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=22.13 E-value=22 Score=27.11 Aligned_cols=49 Identities=18% Similarity=0.410 Sum_probs=33.2
Q ss_pred ccccccccccccCce--EE--eccCCCCCcccccCCCCCCCCCCCccccccccCC
Q psy14605 10 EHQDYCEVCQQGGEI--IL--CDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60 (139)
Q Consensus 10 ~~~~~C~vC~~~g~l--l~--Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~ 60 (139)
..+..|.+|..+++. -. |.+--+.-|..|+...+. .++...|+.|..+.
T Consensus 6 ~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~--~s~~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWIN--TSKNKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHh--cCCCCcccccCCeE
Confidence 556789999987531 12 334445779999986554 34678999997654
No 121
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=22.10 E-value=63 Score=31.43 Aligned_cols=46 Identities=28% Similarity=0.722 Sum_probs=35.3
Q ss_pred ccccccccccc------C-ceEEeccCCCCCcccccCCCCCCCCCCCccccccccC
Q psy14605 11 HQDYCEVCQQG------G-EIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSD 59 (139)
Q Consensus 11 ~~~~C~vC~~~------g-~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 59 (139)
...+|.+|++. | -.+.|..|.-..--.|+. -+..+|.=.||.|...
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye---ye~~~g~~~cp~c~t~ 66 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE---YERSEGNQCCPQCNTR 66 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhh---hhhhcCCccCCccCCc
Confidence 44689999984 3 388899998888888885 3345678899999754
No 122
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.99 E-value=36 Score=28.81 Aligned_cols=45 Identities=22% Similarity=0.500 Sum_probs=31.4
Q ss_pred ccccccccc---CceEEeccCCCCCcccccCCCCCCCCCCCccccccccCC
Q psy14605 13 DYCEVCQQG---GEIILCDTCPRAYHLCCLDPELDETPEGKWSCPRCVSDG 60 (139)
Q Consensus 13 ~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~ 60 (139)
.-|.+|-.. ++-+.---|+-.||..|+.-.+. ...-.||.|...-
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~---~y~~~CPvCrt~i 371 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLL---GYSNKCPVCRTAI 371 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHh---hhcccCCccCCCC
Confidence 458888863 44455567888999999985432 2346799998653
No 123
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.73 E-value=60 Score=28.64 Aligned_cols=10 Identities=40% Similarity=1.036 Sum_probs=8.0
Q ss_pred CccccccccC
Q psy14605 50 KWSCPRCVSD 59 (139)
Q Consensus 50 ~W~C~~C~~~ 59 (139)
.|.||.|-..
T Consensus 253 ~~~Cp~C~s~ 262 (505)
T TIGR00595 253 PKTCPQCGSE 262 (505)
T ss_pred CCCCCCCCCC
Confidence 4899999664
No 124
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=21.39 E-value=77 Score=18.32 Aligned_cols=6 Identities=50% Similarity=1.807 Sum_probs=3.0
Q ss_pred cccccc
Q psy14605 51 WSCPRC 56 (139)
Q Consensus 51 W~C~~C 56 (139)
|.|..|
T Consensus 12 ~~CL~C 17 (50)
T smart00290 12 WLCLTC 17 (50)
T ss_pred EEecCC
Confidence 455554
No 125
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=21.10 E-value=48 Score=19.05 Aligned_cols=12 Identities=33% Similarity=1.071 Sum_probs=8.1
Q ss_pred EeccCCCCCccc
Q psy14605 26 LCDTCPRAYHLC 37 (139)
Q Consensus 26 ~Cd~C~~~~H~~ 37 (139)
+|-.|.+.||..
T Consensus 4 ~CprC~kg~Hwa 15 (36)
T PF14787_consen 4 LCPRCGKGFHWA 15 (36)
T ss_dssp C-TTTSSSCS-T
T ss_pred cCcccCCCcchh
Confidence 588888899974
No 126
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=20.08 E-value=51 Score=24.86 Aligned_cols=22 Identities=23% Similarity=0.745 Sum_probs=14.9
Q ss_pred cccccc--ccCceEEeccCCCCCc
Q psy14605 14 YCEVCQ--QGGEIILCDTCPRAYH 35 (139)
Q Consensus 14 ~C~vC~--~~g~ll~Cd~C~~~~H 35 (139)
.|..|+ .+.-++.|..|.++|-
T Consensus 2 aC~YCG~~~p~~vv~C~~c~kWFC 25 (152)
T PF09416_consen 2 ACAYCGIHDPSCVVKCNTCNKWFC 25 (152)
T ss_dssp S-TTT----CCCEEEETTTTEEEE
T ss_pred CccccCCCCcccEeEcCCCCcEee
Confidence 477777 5667999999988773
Done!